RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1625
(130 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 39.7 bits (93), Expect = 1e-04
Identities = 18/114 (15%), Positives = 45/114 (39%), Gaps = 3/114 (2%)
Query: 16 RHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKP 75
R + ++E + K E+ ++ ++ K + K ++ + +K+ N
Sbjct: 899 RMMAKRELKKLKIEARSVERY---KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955
Query: 76 KKVKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQE 129
TE ++ + E SE+E + EE+++ + E+ Q + +
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 33.2 bits (76), Expect = 0.019
Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 16 RHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQT---FEDKTAKKRAKRLKRKQKLK 72
++ + IQ+ L + + ++ + AK+ K+LK + +
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916
Query: 73 NKPKKVKTEGKEEEEESEDD-SKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQE 129
+ KK+ + + + + + E E S ++ D ++
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Score = 31.6 bits (72), Expect = 0.062
Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 17 HLRRKEYARQKHIQEKSEKE-LLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKP 75
L R R K+ E + ++ ++ + + A + R+ K +
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 76 KKVKTEGKEEEEESEDDSKSEDEN-------SDKDEDNKEGNEEVSERKTEIEQDENSVQ 128
KK+K E + E + E++ +++++ K E+++ + + ++
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 129 ED 130
D
Sbjct: 967 SD 968
Score = 30.1 bits (68), Expect = 0.18
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 18 LRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRK--------Q 69
LR + +E Q++I + R+ +K K ++ +
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK--KTIEEWADKYKHETE 1022
Query: 70 KLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQ 128
+L ++ K+ T K E+EE + + K+ EE + + ++ + Q
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQ-AKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 34.8 bits (80), Expect = 0.005
Identities = 19/118 (16%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 16 RHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKP 75
E R + +K E E + E + +I+E+ + + A+K+ + + +
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 76 KKVKTEGKEEEEESEDDSK---SEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQED 130
++ K + E+ D K ED+ ++ N + +E + + ++ E+
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Score = 31.0 bits (70), Expect = 0.10
Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 15 YRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTA---KKRAKRLKRKQKL 71
+ + ++ + ++E +K E + +QEK Q + A + R + +KQ+L
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 72 KNKPKKVKTEGKEEEEE----SEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSV 127
+ +++ +EEEE + K + + D +E +E + + E + +
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 128 QE 129
++
Sbjct: 986 KK 987
Score = 30.2 bits (68), Expect = 0.17
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 16 RHLRRKEYARQKHIQEKSEKELLDE--EFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKN 73
E + +E+ ++L E + QQ++ + + E++ R K K
Sbjct: 925 LEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE-AARQKLQLEKVTADG 983
Query: 74 KPKKVKTEGKEEEEESEDDSKS----EDENSDKDEDNKEGNEEVSERKTEIEQDENSVQE 129
K KK++ + E+++ +K E+ SD + E E+ + E+ + E
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Score = 30.2 bits (68), Expect = 0.17
Identities = 20/115 (17%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 16 RHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKP 75
L +E ARQK EK + ++ + I + K K ++ L+ +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME--------DQNNKLTKERKLLEERV 1013
Query: 76 KKVKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQED 130
+ T EEEE++++ +K ++++ + + ++ + + E+E+ + ++ +
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Score = 29.8 bits (67), Expect = 0.22
Identities = 21/122 (17%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 18 LRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRK------QKL 71
+ +E Q+ EK + + + +++++E+ + +K K K +
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 72 KNKPKKVKTEGKEEEEESEDDSKS----EDENSDKDEDNKEGNEEVSERKTEIEQDENSV 127
+++ K+ E K EE D + + E++ + + + +SE + ++++E S
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 128 QE 129
QE
Sbjct: 1056 QE 1057
Score = 28.3 bits (63), Expect = 0.83
Identities = 16/112 (14%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 18 LRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKK 77
+ E K +E+ E + + E+ + ++ T K K K ++ +
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT--------KLKNKHESMISE 1043
Query: 78 VKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQE 129
++ K+EE+ ++ E + ++ + +E+++E + +I + + + +
Sbjct: 1044 LEVRLKKEEKSRQE---LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092
Score = 26.3 bits (58), Expect = 4.1
Identities = 14/100 (14%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 30 QEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEES 89
+E+ ++ L++ ++ E E + A+ +A+ + K +L K ++++ E+E+
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHE-QIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 90 EDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQE 129
+ + + + + + E++ K + E ++
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Score = 25.6 bits (56), Expect = 6.8
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 17 HLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFED------KTAKKRAKRLKRKQK 70
L +KE Q + ++ +KI+E D R K K+K+
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Query: 71 LKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDEDNKE 108
L + + +K E E++ D + ++ E D + +
Sbjct: 1149 LSEELEALK----TELEDTLDTTATQQELRGSDYKDDD 1182
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 31.2 bits (70), Expect = 0.077
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 56 KTAKKRAKRLKRKQKLKNKPKKVK--TEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEV 113
+ +K R + + + K+ TEG +KS N+ K E +K
Sbjct: 211 RASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNT 270
Query: 114 SERKTE 119
+ T+
Sbjct: 271 NGVITK 276
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 29.9 bits (68), Expect = 0.16
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 79 KTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQ 122
KTE EE E E+ +K E E+SD + +E EE + ++E+
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 27.2 bits (61), Expect = 1.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 68 KQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSE 115
K + +P + + KEE+E+S+D++ E+E +K K+ + V +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 29.9 bits (68), Expect = 0.21
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 11 EFHVYRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFE------DKTAKKRAKR 64
EF V +R Y R +QEK +K+ L E + ++ + + ++ KR
Sbjct: 92 EFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLERLIKLGRRNGLHLPRETQENIKR 151
Query: 65 LKRK 68
+K+K
Sbjct: 152 IKKK 155
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 29.9 bits (68), Expect = 0.23
Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 11 EFHVYRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFE------DKTAKKRAKR 64
F + +R + R H+QE + E + E ++ +++ + + + + K
Sbjct: 108 RFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGKRNGLHLSEHIRNEIKS 167
Query: 65 LKRK 68
+K++
Sbjct: 168 MKKR 171
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 29.2 bits (66), Expect = 0.31
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 27 KHIQEKSEKELLDEEFQQKIQEKR--QTFEDKTAKKRAKRLKRKQKLKNKPKKV 78
+ +LL E +Q++ + + F K R + +L+ + + V
Sbjct: 269 SRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSV 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.34
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 12 FHVYRHLRRKEYARQKHIQEKSEKELLDEEF-QQKI 46
H+ HL+ E+ + LD F +QKI
Sbjct: 475 SHIGHHLKNIEHPERM---TLFRMVFLDFRFLEQKI 507
Score = 26.0 bits (56), Expect = 5.1
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 33/103 (32%)
Query: 15 YRHLRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNK 74
++H+ + I E S L E+ R+ F+ L
Sbjct: 347 WKHV---NCDKLTTIIESSLNVLEPAEY-------RKMFDR---------------LSVF 381
Query: 75 PKKVK-TE-------GKEEEEESEDDSKSEDENSDKDEDNKEG 109
P + + + S ++ KE
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Score = 26.0 bits (56), Expect = 5.2
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 12/91 (13%)
Query: 27 KHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEE 86
K +Q+ + L EE I K A RL L +K +++ + EE
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMS-------KDAVSGTLRL--FWTLLSKQEEMVQKFVEEV 86
Query: 87 EESEDD---SKSEDENSDKDEDNKEGNEEVS 114
S + E + E+
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Score = 25.6 bits (55), Expect = 7.2
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%)
Query: 20 RKEY-----ARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNK 74
R Y + ++ S + E + ++ Q F AK RL+ KL+
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQA 143
Query: 75 PKKVKTEG 82
+++
Sbjct: 144 LLELRPAK 151
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.41
Identities = 12/60 (20%), Positives = 27/60 (45%)
Query: 44 QKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKD 103
+ I++ R+ + + A +Q+ + K KK E + + E + +K + +DK
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 28.9 bits (64), Expect = 0.41
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 30 QEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEES 89
+ + QQ++ + R E++ + + + K K +K E E++ E+
Sbjct: 3 ENIYTTLKFESMMQQRVIQIRSIPEEEYHELVSVQFKTDGGKYEKGEKQDLELSEKKTEN 62
Query: 90 EDDSKS--EDENSDKDEDNKEGNEEVSERKTE 119
D++S +EN D DE + E +
Sbjct: 63 GKDTESWGWNENQDSDEHDGWDEELDIDVDNV 94
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.2 bits (63), Expect = 0.68
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 77 KVKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQED 130
+ E + + + + + + + E EG+ + E K E +D +
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSE 231
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple
rossmann fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A
{Azotobacter vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A*
1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A*
2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A*
1qh8_A*
Length = 492
Score = 28.2 bits (63), Expect = 0.79
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 40 EEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKT 80
EE + IQE + + +K K R K L + KK
Sbjct: 7 EEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCII 47
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A
{Azotobacter vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B*
1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B*
2afk_B* 2min_B* 3k1a_B* 3min_B*
Length = 523
Score = 27.8 bits (62), Expect = 0.98
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 39 DEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKK 77
D++++ + +KR FE+K + + + + K +
Sbjct: 17 DQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQEL 55
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 1.2
Identities = 17/80 (21%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 18 LRRKEYARQKHIQEKSEKEL-LDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPK 76
L + E R++H+ + + E+ +++ F+ K++EK Q +D A+ + + + K+ L+ + K
Sbjct: 317 LAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHK 376
Query: 77 KVKTEGKEEEEESEDDSKSE 96
+++ + ++ E+E + +
Sbjct: 377 ELEEKRRQFEDEKANWEAQQ 396
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 27.5 bits (60), Expect = 1.5
Identities = 15/107 (14%), Positives = 37/107 (34%)
Query: 18 LRRKEYARQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKK 77
L R++ Q ++ ++ L E ++ + ++ A R++ + + K
Sbjct: 688 LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
Query: 78 VKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDE 124
+ E E E E K + E +++ +E +
Sbjct: 748 AQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKK 794
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 26.5 bits (57), Expect = 3.1
Identities = 9/88 (10%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 44 QKIQEKRQTFEDKTAKKRAKRLKR-KQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDK 102
+ FE +K+ ++ Q+L+N + + + ++ + + + K
Sbjct: 336 SIWLKYLSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVK 395
Query: 103 DEDNKEGNEEVSERKTEIEQDENSVQED 130
K +V+ + + + +++
Sbjct: 396 PWLLKTVQRKVTSELQDADFEIFPLEDK 423
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 26.2 bits (57), Expect = 3.5
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 48 EKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDED 105
+K + + ++L R + + + K E++ KS+ E + +D
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDD 317
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 26.4 bits (59), Expect = 3.6
Identities = 11/86 (12%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 39 DEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESEDDSKSEDE 98
E +++ + R+ ++ ++ K KL + +K E ++ E ++
Sbjct: 260 SEPRAREVVDWRK------YEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHWKER 313
Query: 99 NSDKDEDNKEGNEEVSERKTEIEQDE 124
+ K + ++ + K E + +
Sbjct: 314 SYIKYREKRQQQPLKPKEKLERDSNV 339
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 26.1 bits (58), Expect = 3.9
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 58 AKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDEDNK 107
++ + + + + + K E E S + KD+D+K
Sbjct: 542 QVTKSTQNSFRAESSQTCHSEQGDKKMEAENLYFQSHHHHHHDYKDDDDK 591
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 26.3 bits (58), Expect = 3.9
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 32 KSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESE 90
KSE E+ D E + +Q +A ++ ++ K+K+ K E EE E +
Sbjct: 351 KSEMEVQDAELKALLQ--------SSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 25.8 bits (57), Expect = 4.3
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Query: 27 KHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAK----RLKRKQKLKNKPKKVKTEG 82
K + +++ Q E + FE+ + + K LK K + +K +
Sbjct: 143 KAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKN 202
Query: 83 KEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKTEIEQDENSVQE 129
+ KS +E R I + ++
Sbjct: 203 RRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKA 249
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 25.9 bits (57), Expect = 4.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 84 EEEEESEDDSKSEDENSDKDEDNKEGNEEVSERKT 118
++ ESEDD SE+ S+++ N + +
Sbjct: 5 DDLLESEDDYGSEEALSEENVHEASANPQPEDFHG 39
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 25.8 bits (57), Expect = 4.8
Identities = 11/76 (14%), Positives = 28/76 (36%)
Query: 54 EDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDEDNKEGNEEV 113
E + + + + + ++ EEE ++ E + + + EE+
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 114 SERKTEIEQDENSVQE 129
+ K +I + E + E
Sbjct: 62 AAAKAQIAELEAKLSE 77
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 25.7 bits (57), Expect = 5.0
Identities = 5/42 (11%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 25 RQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLK 66
+ ++ ++ + +E + +QE + + + + R K
Sbjct: 38 VIRVLRGLLDQGIPSKELEN-LQELKPLDQCLIGQTKENRRK 78
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 25.9 bits (56), Expect = 5.1
Identities = 15/97 (15%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 22 EYARQKHIQEKSEKEL-LDEEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKT 80
E R + + E +KE + + F Q+++EK ++ + K + K+ +++ KK++
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLED 384
Query: 81 EGKEEEEESEDDSKSEDENSDKDEDNKEGNEEVSERK 117
+ K ++E + + + + ++
Sbjct: 385 KKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKR 421
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 25.2 bits (54), Expect = 6.4
Identities = 9/57 (15%), Positives = 29/57 (50%)
Query: 49 KRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEEESEDDSKSEDENSDKDED 105
+R+ FE+ ++ K + ++ + + + + + +++ +++D+N D ED
Sbjct: 129 RRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPED 185
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing,
spliceosome, RNA-binding domain, SM fold, finger, RNA
recognition motif, 5' splice site; 5.49A {Homo sapiens}
PDB: 1uw2_A 2vrd_A
Length = 77
Score = 24.2 bits (52), Expect = 6.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 25 RQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAK 59
R+ H + KE + + + + ++E+ Q+ DKT
Sbjct: 21 RKTHCSGRKHKENVKDYYCKWMEEQAQSLIDKTTA 55
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 25.4 bits (55), Expect = 7.1
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 40 EEFQQKIQEKRQTFEDKTAKKRAKRLKRKQKLKNKPKKVKTEGKEEEE 87
+EF + QE+R +++T K K K + K + K+E++
Sbjct: 385 QEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 25.4 bits (55), Expect = 7.4
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 54 EDKTAKKRAKRLKRKQKLKNK----------PKKVKTEGKEEEEESEDDSKSEDENSDKD 103
++K A+ + ++K K N+ K + + KEE ++ SE ++K
Sbjct: 383 QNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKG 442
Query: 104 EDNKEGNEEVSE 115
D++ EE E
Sbjct: 443 TDSQAMEEEKPE 454
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 24.9 bits (55), Expect = 8.2
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 25 RQKHIQEKSEKELLDEEFQQKIQEKRQTFEDKTAKKRAKRLK 66
R + +++K E+ ++ E++Q I +K+ TA +
Sbjct: 34 RFRTLKKKLEEGMVFTEYEQ-IPKKKANGIFSTAALPENAER 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 25.2 bits (56), Expect = 8.4
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 24 ARQKHIQEKSEKELLDEEFQQKIQEK-----RQTFEDKTAKKRAKRLKRKQKLKNKPKKV 78
R + + L+++ + +EK Q FE K A R + ++++++ K
Sbjct: 385 VRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE-KAASLRDTEQRLREQVEDTKKSW 443
Query: 79 KTEGKEEEEE-SEDD 92
K + +E E + DD
Sbjct: 444 KEKQGQENSEVTVDD 458
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.296 0.119 0.298
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,747,063
Number of extensions: 94577
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 636
Number of HSP's successfully gapped: 326
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 52 (23.8 bits)