BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16250
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor
Trna(Thr)
Length = 320
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 102/249 (40%), Gaps = 38/249 (15%)
Query: 138 LLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLT 197
L DCGE T Q++ ++ ++I+H+H DH GL ++ + S E +LT
Sbjct: 35 LFDCGEATQHQMLH-----TTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELT 89
Query: 198 LLAPRQIITWLSVYAARFESVGHLYRLVPLSL---------------FNTKGLIEGTEQH 242
+ P+ I ++ A V + PL++ +I G E
Sbjct: 90 VYGPKGIKAFIETSLA----VTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAF 145
Query: 243 G-----QNRP-ALDPDTVQ--------ILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHK 288
G ++ P +L D ++ + + T N K G
Sbjct: 146 GYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRS 205
Query: 289 ITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFV 348
+ +SGDT D L + ++ D+++HEAT E K A HST QA +E RAK +
Sbjct: 206 VVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQL 265
Query: 349 LLTHFSQRY 357
+LTH S RY
Sbjct: 266 ILTHISARY 274
>pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX
Length = 320
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 38/249 (15%)
Query: 138 LLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLT 197
L DCGE T Q++ ++ ++I+H+ DH GL ++ + S E +LT
Sbjct: 35 LFDCGEATQHQMLH-----TTIKPRKIEKIFITHMAGDHVYGLPGLLGSRSFQGGEDELT 89
Query: 198 LLAPRQIITWLSVYAARFESVGHLYRLVPLSL---------------FNTKGLIEGTEQH 242
+ P+ I ++ A V + PL++ +I G E
Sbjct: 90 VYGPKGIKAFIETSLA----VTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAF 145
Query: 243 G-----QNRP-ALDPDTVQ--------ILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHK 288
G ++ P +L D ++ + + T N K G
Sbjct: 146 GYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRS 205
Query: 289 ITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFV 348
+ +SGDT D L + ++ D+++HEAT E K A HST QA +E RAK +
Sbjct: 206 VVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQL 265
Query: 349 LLTHFSQRY 357
+LTH S RY
Sbjct: 266 ILTHISARY 274
>pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z
pdb|1Y44|B Chain B, Crystal Structure Of Rnase Z
Length = 320
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 38/249 (15%)
Query: 138 LLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLT 197
L DCGE T Q + ++ ++I+H H DH GL ++ + S E +LT
Sbjct: 35 LFDCGEATQHQXLH-----TTIKPRKIEKIFITHXHGDHVYGLPGLLGSRSFQGGEDELT 89
Query: 198 LLAPRQIITWLSVYAARFESVGHLYRLVPLSL---------------FNTKGLIEGTEQH 242
+ P+ I ++ A V + PL++ +I G E
Sbjct: 90 VYGPKGIKAFIETSLA----VTKTHLTYPLAIQEIEEGIVFEDDQFIVTAVSVIHGVEAF 145
Query: 243 G-----QNRPA-LDPDTVQ--------ILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHK 288
G ++ P L D ++ + + T N K G
Sbjct: 146 GYRVQEKDVPGSLKADVLKEXNIPPGPVYQKIKKGETVTLEDGRIINGNDFLEPPKKGRS 205
Query: 289 ITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFV 348
+ +SGDT D L + ++ D+ +HEAT E K A HST QA +E RAK +
Sbjct: 206 VVFSGDTRVSDKLKELARDCDVXVHEATFAKEDRKLAYDYYHSTTEQAAVTAKEARAKQL 265
Query: 349 LLTHFSQRY 357
+LTH S RY
Sbjct: 266 ILTHISARY 274
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 286 GHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRA 345
G + GDT PCDA + + K D+++HEAT + +E +A + HS+ QA + RE
Sbjct: 205 GKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGV 264
Query: 346 KFVLLTHFSQRY 357
+++TH S RY
Sbjct: 265 GKLIITHVSSRY 276
>pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1).
pdb|3ZWF|B Chain B, Crystal Structure Of Human Trnase Z, Short Form (Elac1)
Length = 368
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 286 GHKITYSGDTMPCDALVSIGK-----NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIG 340
G KI GD C +V G +DLLIHEAT +D +A HST A
Sbjct: 243 GRKICILGD---CSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMAATFA 299
Query: 341 REMRAKFVLLTHFSQRY 357
+ RAK ++LTHFSQRY
Sbjct: 300 KLCRAKRLVLTHFSQRY 316
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 112 SDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISH 171
+ + +P +G + +R G C L DCGEGT +QL++ A +++ ++I+H
Sbjct: 8 TGAAYPSPTRGASAVVLRCEG--ECWLFDCGEGTQTQLMKSQLKA-----GRITKIFITH 60
Query: 172 LHADHHLGL 180
LH DH GL
Sbjct: 61 LHGDHFFGL 69
>pdb|1ZKP|A Chain A, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|B Chain B, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|C Chain C, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|D Chain D, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
Length = 268
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 37/217 (17%)
Query: 137 ILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKL 196
+L+DCG G +QL + S + AV +SH H DH A V +L
Sbjct: 55 LLVDCGSGVLAQLQKY------ITPSDIDAVVLSHYHHDH--------VADIGVLQYARL 100
Query: 197 TLLAPRQIITWLSVYAARFESVG-HLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQ 255
A + + L +Y F+ G H P +TKG+ E+ Q + P ++
Sbjct: 101 ITSATKGQLPELPIYGHTFDENGFHSLTHEP----HTKGIPYNPEETLQ----IGPFSIS 152
Query: 256 ILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEA 315
L ++ TC +T + YS D+ + K++DL I E
Sbjct: 153 FLKTV---HPVTCFAX---------RITAGNDIVVYSADSSYIPEFIPFTKDADLFICEC 200
Query: 316 THEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTH 352
+EAA H ++ I ++ K +LLTH
Sbjct: 201 --NXYAHQEAAKAGHXNSTEVASIAKDANVKELLLTH 235
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 96/245 (39%), Gaps = 37/245 (15%)
Query: 137 ILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWS-----RVK 191
IL D GEG + L GS V V+++H H DH GL+ V+ + R K
Sbjct: 22 ILFDAGEGVSTTL----GSKV----YAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREK 73
Query: 192 PECKLTLLAP---RQIITWLSVYAARFESVGHLYRLVPLS------LFNTKGLIEGTE-- 240
P L + P R + + + + + PL L N G +
Sbjct: 74 P---LDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPF 130
Query: 241 --QHGQNRPALDPDTVQILSSLG--LESMTTCLVRHCPNAFGVTMVTKSGHK--ITYSGD 294
+H + + ++ L + + + + G VT+ HK +T SGD
Sbjct: 131 RTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGD 190
Query: 295 TMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFS 354
++ D G ++LLIHE T D ++ K H+ + + + + K V+L H S
Sbjct: 191 SLALDPEEIRG--TELLIHECTFLDA--RDRRYKNHAAIDEVMESVKAAGVKKVILYHIS 246
Query: 355 QRYAK 359
RY +
Sbjct: 247 TRYIR 251
>pdb|3QFE|A Chain A, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
pdb|3QFE|B Chain B, Crystal Structures Of A Putative Dihydrodipicolinate
Synthase Family Protein From Coccidioides Immitis
Length = 318
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 225 VPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTK 284
+P+ ++N G+ G + LD D M T + R PN GV +
Sbjct: 140 LPVVIYNFPGVCNGID--------LDSD------------MITTIARKNPNVVGVKLTCA 179
Query: 285 SGHKITYSGDTMPCDALVSIGKNSDLLI 312
S KIT T+P A G SD LI
Sbjct: 180 SVGKITRLAATLPPAAFSVFGGQSDFLI 207
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 2 NSSSPKVTECSSVTVLD--CPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHI 59
N+ + + CS +TV+ PSED LDSL+G+++F D AA++ P
Sbjct: 768 NAGARVLVVCSEITVVTFRGPSEDALDSLVGQALFG---------DGSAAVIVGSDPDIS 818
Query: 60 MSHPRYKEFMSKFPSTTQHLVLNESNECQGS 90
+ P + + S Q + N + G+
Sbjct: 819 IERPLF-----QLVSAAQTFIPNSAGAIAGN 844
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 2 NSSSPKVTECSSVTVL--DCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHI 59
N S + CS +T + P+E++LDSL+ +++F D AAL+ PH
Sbjct: 186 NKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFG---------DGAAALIVGSGPHLA 236
Query: 60 MSHPRYK 66
+ P ++
Sbjct: 237 VERPIFE 243
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 2 NSSSPKVTECSSVTVLD--CPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHI 59
N+ + + CS VT + PSE ++D L+G ++F D AA++ P
Sbjct: 199 NAGARVLAICSEVTAVTFRAPSETHIDGLVGSALFG---------DGAAAVIVGSDPRPG 249
Query: 60 MSHPRYK 66
+ P Y+
Sbjct: 250 IERPIYE 256
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 103 LDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLS 162
L + +L + P+ +G + G GP IL+D GE + + A+ +
Sbjct: 12 LSNRVVRVLGCNPGPMTLQGTNTYLV-GTGPRR-ILIDTGEPAIPEYISCLKQALTEFNT 69
Query: 163 QLSAVYISHLHADHHLGLFSVIKAWSRVKPEC 194
+ + ++H H DH G+ + K+ + C
Sbjct: 70 AIQEIVVTHWHRDHSGGIGDICKSINNDTTYC 101
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 2 NSSSPKVTECS--SVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHI 59
N + + CS + T PSE +LDS++G+++F D AA++ P
Sbjct: 177 NKGARVLIVCSEMTTTCFRGPSETHLDSMIGQALFG---------DGAAAVIVGADPDLT 227
Query: 60 MSHPRYKEFMSKFPSTTQHLVLNESNECQG-----STAVHKIQCKLNILDKEIFPMLSDS 114
+ P + + ST Q +V +G + H + ++ I LSD+
Sbjct: 228 VERPIF-----ELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDA 282
Query: 115 GFPL 118
PL
Sbjct: 283 FTPL 286
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 133 PDTCILLDCG---EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
P++ +LLDCG G + Y + + L L AV I+H H DH
Sbjct: 201 PNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDH 247
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 2 NSSSPKVTECS--SVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHI 59
N + + CS + T PSE +LDS++G++I D AA++ P
Sbjct: 177 NKGARVLIVCSEMTTTCFRGPSETHLDSMIGQAILG---------DGAAAVIVGADPDLT 227
Query: 60 MSHPRYKEFMSKFPSTTQHLVLNESNECQG-----STAVHKIQCKLNILDKEIFPMLSDS 114
+ P + + ST Q +V +G + H + ++ I LSD+
Sbjct: 228 VERPIF-----ELVSTAQTIVPESHGAIEGHLLESGLSFHLYKTVPTLISNNIKTCLSDA 282
Query: 115 GFPL 118
PL
Sbjct: 283 FTPL 286
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 133 PDTCILLDCGEGTYSQ---LVRLYGSAVDTLLSQLSAVYISHLHADHH 177
P++ IL+DCG S LY V L +Q+ AV ++H H DH
Sbjct: 205 PESRILIDCGVNVGSDENMTPYLYVPEVFPL-NQIDAVIVTHAHLDHQ 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,618,210
Number of Sequences: 62578
Number of extensions: 521311
Number of successful extensions: 1138
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 23
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)