Query psy16250
Match_columns 485
No_of_seqs 357 out of 1990
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:38:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2121|consensus 100.0 6.1E-79 1.3E-83 646.1 19.4 395 6-459 261-746 (746)
2 COG1234 ElaC Metal-dependent h 100.0 6.1E-39 1.3E-43 322.5 19.8 254 123-382 15-291 (292)
3 TIGR02649 true_RNase_BN ribonu 100.0 4.4E-38 9.4E-43 318.4 21.2 230 123-382 12-303 (303)
4 TIGR02651 RNase_Z ribonuclease 100.0 6.8E-37 1.5E-41 308.4 21.0 231 124-382 14-299 (299)
5 PRK00055 ribonuclease Z; Revie 100.0 4.8E-33 1E-37 275.3 20.2 238 124-384 16-268 (270)
6 PRK02113 putative hydrolase; P 100.0 5.9E-31 1.3E-35 259.1 18.4 216 123-382 30-252 (252)
7 PRK11244 phnP carbon-phosphoru 100.0 6E-30 1.3E-34 252.0 18.4 214 122-382 31-250 (250)
8 PRK02126 ribonuclease Z; Provi 100.0 1.7E-29 3.6E-34 258.4 18.1 215 132-359 25-319 (334)
9 PRK05184 pyrroloquinoline quin 100.0 9.3E-29 2E-33 250.2 18.7 230 123-382 34-302 (302)
10 TIGR03307 PhnP phosphonate met 100.0 7.8E-28 1.7E-32 235.2 17.5 211 123-380 22-238 (238)
11 TIGR02650 RNase_Z_T_toga ribon 99.9 1.3E-27 2.8E-32 235.6 12.9 198 132-359 16-250 (277)
12 TIGR02108 PQQ_syn_pqqB coenzym 99.9 1.3E-26 2.9E-31 234.1 17.1 231 123-382 33-302 (302)
13 PF12706 Lactamase_B_2: Beta-l 99.9 1.9E-24 4.2E-29 202.8 15.6 185 135-353 1-194 (194)
14 PRK00685 metal-dependent hydro 99.8 1.9E-17 4.2E-22 160.2 16.7 191 132-382 15-228 (228)
15 PRK04286 hypothetical protein; 99.8 5.3E-18 1.1E-22 171.5 13.1 226 125-380 13-282 (298)
16 TIGR00649 MG423 conserved hypo 99.7 3.5E-17 7.6E-22 173.2 13.5 200 125-362 13-235 (422)
17 PRK11709 putative L-ascorbate 99.6 2.9E-14 6.2E-19 147.2 14.7 156 160-355 106-285 (355)
18 COG1235 PhnP Metal-dependent h 99.5 1.8E-13 3.8E-18 136.5 14.1 193 132-359 38-241 (269)
19 smart00849 Lactamase_B Metallo 99.4 2E-12 4.3E-17 119.1 10.0 176 126-352 4-183 (183)
20 TIGR03675 arCOG00543 arCOG0054 99.4 3.6E-12 7.8E-17 140.6 12.2 169 132-319 195-376 (630)
21 COG0595 mRNA degradation ribon 99.3 1.3E-11 2.9E-16 133.2 11.5 194 125-360 21-241 (555)
22 COG1236 YSH1 Predicted exonucl 99.2 1.1E-10 2.4E-15 123.8 10.5 164 132-320 21-193 (427)
23 PF00753 Lactamase_B: Metallo- 99.0 1.2E-09 2.6E-14 100.1 8.9 181 132-352 13-194 (194)
24 COG1782 Predicted metal-depend 98.9 8.1E-09 1.8E-13 107.7 12.0 225 132-382 201-451 (637)
25 PF02112 PDEase_II: cAMP phosp 98.9 5.3E-09 1.2E-13 106.9 10.0 188 162-358 78-303 (335)
26 PF13483 Lactamase_B_3: Beta-l 98.9 1.4E-08 3.1E-13 93.4 11.1 81 261-352 74-163 (163)
27 KOG1136|consensus 98.8 3.8E-09 8.3E-14 105.0 6.1 174 132-320 24-209 (501)
28 TIGR03413 GSH_gloB hydroxyacyl 98.7 3.2E-08 6.9E-13 97.7 8.5 109 134-299 20-131 (248)
29 PRK11921 metallo-beta-lactamas 98.7 5.9E-08 1.3E-12 102.1 10.5 122 132-295 39-163 (394)
30 COG2220 Predicted Zn-dependent 98.6 4.4E-07 9.5E-12 89.9 12.2 178 132-354 21-213 (258)
31 COG1237 Metal-dependent hydrol 98.5 2.6E-07 5.6E-12 90.1 7.1 70 128-206 23-96 (259)
32 PRK10241 hydroxyacylglutathion 98.5 1.3E-06 2.9E-11 86.4 12.2 58 132-203 20-79 (251)
33 KOG1361|consensus 98.4 3.4E-07 7.5E-12 96.6 6.1 120 162-320 111-235 (481)
34 PRK05452 anaerobic nitric oxid 98.4 1.4E-06 3.1E-11 93.8 10.1 123 132-295 41-167 (479)
35 COG0491 GloB Zn-dependent hydr 98.3 1.6E-06 3.6E-11 83.3 7.7 65 134-208 35-101 (252)
36 KOG1137|consensus 98.3 1.9E-07 4E-12 98.4 0.6 171 132-319 34-211 (668)
37 COG5212 PDE1 Low-affinity cAMP 98.2 3E-06 6.5E-11 82.7 7.4 176 161-358 110-318 (356)
38 PLN02469 hydroxyacylglutathion 98.2 4.4E-06 9.6E-11 83.0 8.8 57 134-202 23-79 (258)
39 PLN02398 hydroxyacylglutathion 98.2 4.1E-06 8.9E-11 85.9 8.5 113 134-299 98-211 (329)
40 COG2248 Predicted hydrolase (m 98.1 5.4E-05 1.2E-09 73.5 12.8 196 132-362 22-256 (304)
41 PLN02962 hydroxyacylglutathion 98.0 1.2E-05 2.7E-10 79.5 7.6 50 133-186 35-84 (251)
42 TIGR00361 ComEC_Rec2 DNA inter 98.0 6.8E-05 1.5E-09 84.2 13.9 58 132-203 457-524 (662)
43 KOG3798|consensus 97.9 5.1E-05 1.1E-09 73.6 8.3 159 159-355 128-301 (343)
44 PRK11539 ComEC family competen 97.7 0.00097 2.1E-08 76.1 15.9 49 132-187 518-575 (755)
45 COG2333 ComEC Predicted hydrol 97.4 0.001 2.2E-08 67.2 10.4 62 132-204 61-127 (293)
46 KOG0813|consensus 97.2 0.00071 1.5E-08 66.9 6.8 94 160-297 48-142 (265)
47 COG0426 FpaA Uncharacterized f 97.0 0.0026 5.7E-08 66.2 9.0 123 132-296 42-167 (388)
48 PF13691 Lactamase_B_4: tRNase 97.0 0.00071 1.5E-08 52.5 3.7 43 132-179 19-63 (63)
49 KOG1135|consensus 96.9 0.0051 1.1E-07 67.2 9.9 164 132-316 22-199 (764)
50 KOG0814|consensus 95.8 0.016 3.5E-07 53.7 5.5 45 132-183 30-77 (237)
51 COG2015 Alkyl sulfatase and re 94.8 0.046 9.9E-07 57.9 5.4 74 126-207 126-206 (655)
52 KOG3592|consensus 87.8 0.35 7.7E-06 53.5 2.6 54 125-186 46-104 (934)
53 KOG2121|consensus 84.2 0.53 1.2E-05 52.5 1.8 77 132-213 71-147 (746)
54 PF14597 Lactamase_B_5: Metall 71.6 27 0.00058 33.1 8.6 109 132-296 30-138 (199)
55 PF07521 RMMBL: RNA-metabolisi 70.6 6.3 0.00014 28.0 3.4 27 327-353 14-40 (43)
56 PF01073 3Beta_HSD: 3-beta hyd 43.1 29 0.00064 34.7 4.1 65 290-354 49-117 (280)
57 KOG4736|consensus 42.1 25 0.00054 35.6 3.3 47 126-180 96-142 (302)
58 cd00027 BRCT Breast Cancer Sup 28.8 78 0.0017 22.9 3.5 36 50-85 2-46 (72)
59 PF00533 BRCT: BRCA1 C Terminu 28.6 66 0.0014 24.5 3.2 35 50-84 9-51 (78)
60 PLN02214 cinnamoyl-CoA reducta 26.2 68 0.0015 32.8 3.6 63 290-352 64-126 (342)
61 smart00846 Gp_dh_N Glyceraldeh 24.3 1E+02 0.0022 27.9 4.0 58 285-356 66-123 (149)
62 COG3716 ManZ Phosphotransferas 24.1 56 0.0012 32.6 2.3 42 415-461 22-63 (269)
63 PHA02893 hypothetical protein; 23.9 20 0.00043 29.3 -0.7 44 392-435 11-54 (88)
64 PRK09875 putative hydrolase; P 23.9 1E+02 0.0022 31.3 4.3 100 335-448 167-277 (292)
65 cd02071 MM_CoA_mut_B12_BD meth 21.1 1.4E+02 0.0031 25.7 4.2 53 284-345 25-79 (122)
66 CHL00194 ycf39 Ycf39; Provisio 20.5 1.1E+02 0.0024 30.7 3.9 61 290-351 47-108 (317)
No 1
>KOG2121|consensus
Probab=100.00 E-value=6.1e-79 Score=646.06 Aligned_cols=395 Identities=42% Similarity=0.669 Sum_probs=329.3
Q ss_pred CCCCCCCeEEEEEcCChhhHHHhhcccchhhccccccCCCCceEEEEEecCCCccCChhHHHHHHhCCCCceEEecCCCC
Q psy16250 6 PKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSKFPSTTQHLVLNESN 85 (485)
Q Consensus 6 ~~~~~g~~~~i~d~p~~~yl~~l~~~~~~~~~~~~~~~~~~~~~~v~h~~~~~v~~~~~y~~~~~~f~~~~~Hi~~~~~~ 85 (485)
-|+.||+.|+|+|||++.||+.++++-....|.+.. . ..|.||+|++|.+|..+++|+.||.+|++.+||+++++++
T Consensus 261 gp~~~~~~f~il~cp~e~~l~~i~~~~~~~~y~~~~--~-~~V~civh~~p~~v~~~~~y~~~~~~f~s~~qH~~~~~~~ 337 (746)
T KOG2121|consen 261 GPSRPGASFLILDCPDESYLNAILENIKKHKYSGLP--D-EPVACIVHITPASVYSSDRYQSWMEKFYSEAQHIILSEEN 337 (746)
T ss_pred CCCCCccEEEEecCCcHHHHHHHHhccchhhhccCC--C-cceeEEEEEcccceeccHHHHhhHhhccchhhhhhhcccc
Confidence 378999999999999999999999987655555432 2 4599999999999999999999999999999999999886
Q ss_pred cc-ccchhHHHHHHHhhcccccccCCCCCCCCCC-----------------CCCC-------------------------
Q psy16250 86 EC-QGSTAVHKIQCKLNILDKEIFPMLSDSGFPL-----------------LDKG------------------------- 122 (485)
Q Consensus 86 ~~-~~~~~~~~~~~~l~~~~~~~fp~~~~~~~~~-----------------l~p~------------------------- 122 (485)
.. ..+.+++++|++||.++|.+||++.....+. |||.
T Consensus 338 ~~~~~~~~~~~~~~~ln~l~p~~Fpl~~~f~~~~s~~~~~~~~~~~~~k~~Lrp~~g~d~~~~~~~pe~~~~~~~~~~~~ 417 (746)
T KOG2121|consen 338 AAFPNLRASHRIQAQLNLLLPQVFPLLGSFDVKLSGLGIQIPSPSNLLKYVLRPEGGIDDEVLFDIPEEKSEELKQSPNK 417 (746)
T ss_pred ccccccccHHHHHHhhcccCchhccCcccceeeccCCcccccCCcccceeEeeccCCCCcceeecCchhhhhhhccCcch
Confidence 54 4678899999999999999999985422110 3332
Q ss_pred --------------------------------------cceeeeeee----cCCceEEEeCCCCHHHHHHHHhC-Ccccc
Q psy16250 123 --------------------------------------KQVLAIRGP----GPDTCILLDCGEGTYSQLVRLYG-SAVDT 159 (485)
Q Consensus 123 --------------------------------------~k~RNvS~~----~~~~~ILlDcGegt~~qL~r~~G-~~~~~ 159 (485)
+||||||++ ..+.+||+||||||++||.|+|| +.++.
T Consensus 418 ~~~~~~i~k~~~~~~~~P~~~e~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~ 497 (746)
T KOG2121|consen 418 QKRSTKIQKYHLSGDHFPNFAEKKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDT 497 (746)
T ss_pred hcchhhhhhhhccCCCCCCccccCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHH
Confidence 399999999 46678999999999999999999 78888
Q ss_pred cccCcCEEEeecCchhhhcChHHHHHHHhcc---CCCceeEEEcCccHHHHHHHHHHHHHhhcccccccc--ccccccCC
Q psy16250 160 LLSQLSAVYISHLHADHHLGLFSVIKAWSRV---KPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVP--LSLFNTKG 234 (485)
Q Consensus 160 ~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~---~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~--~~l~~~~~ 234 (485)
.++++++|||||+|||||+|+++++.+|... ....|+.|++|+++..||++|..+-.-....+..+. ..++....
T Consensus 498 ~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s 577 (746)
T KOG2121|consen 498 ALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKS 577 (746)
T ss_pred HHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccC
Confidence 9999999999999999999999999999875 256799999999999999998742111111111111 12221111
Q ss_pred CccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCCcEEEEECCCCCchhHHHhhcCCChhhhc
Q psy16250 235 LIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHE 314 (485)
Q Consensus 235 ~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G~kIvYSGDT~p~~~l~~~~~~aDLLIhE 314 (485)
.+ + ........++..+|+.+|.+++|.||+++||..|++..||||+||||||||+.++++++||||||||
T Consensus 578 ~~------s----~~~~~~~~~l~~~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~g~datlLIHE 647 (746)
T KOG2121|consen 578 PD------S----VPERLLSYLLRELGLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKAGKDATLLIHE 647 (746)
T ss_pred cc------c----cchhhhhHHHHhcCceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHhhhccCCceEEee
Confidence 00 0 0112345678889999999999999999999999988899999999999999999999999999999
Q ss_pred cCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCChHHHhhhcCcceeeeccCcEeeccchhhhhHHHHH
Q psy16250 315 ATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKR 394 (485)
Q Consensus 315 ATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~~~~l~~~~~~~v~iA~Dgm~i~l~~~~~~~~~~~~ 394 (485)
|||+|++.|+|..++|||++||+.+++.|||+++|||||||||++.| +..+ +..
T Consensus 648 AT~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~p-l~~d----------~~~--------------- 701 (746)
T KOG2121|consen 648 ATLEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVP-LPSD----------GEM--------------- 701 (746)
T ss_pred hhhchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCC-CCCc----------ccc---------------
Confidence 99999999999999999999999999999999999999999999987 4321 111
Q ss_pred HHHHHHhhhhccccccccCCCceeeeccccccccCChhhhhhhHHHHHHhHHhhHHHHHHHHHHH
Q psy16250 395 KKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRR 459 (485)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 459 (485)
..+|+|||.|.|.++|++.++++.|+++.+|+++.+|+|++++||
T Consensus 702 --------------------~~~~~afd~m~v~~~D~~~~~~~~p~l~~~f~e~~~e~E~~~~~~ 746 (746)
T KOG2121|consen 702 --------------------DPVCVAFDKMAVSVADLQEVPKFEPYLKALFAEEKEEEEERDEKR 746 (746)
T ss_pred --------------------chHHHhhhcceeeccccchhhhhhhHHHHHhhhhhhhhhhhhccC
Confidence 236788888889999999999999999999999999999998875
No 2
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=6.1e-39 Score=322.51 Aligned_cols=254 Identities=30% Similarity=0.370 Sum_probs=182.7
Q ss_pred cceeeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEE
Q psy16250 123 KQVLAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLL 199 (485)
Q Consensus 123 ~k~RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~ 199 (485)
++.||+|++ .++..+|||||+|++.||.+ .+ ..+.+|++|||||+|.||++||++++..++..+...|+.||
T Consensus 15 t~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~-~~----~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iy 89 (292)
T COG1234 15 TKDRNVSSILLRLEGEKFLFDCGEGTQHQLLR-AG----LPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIY 89 (292)
T ss_pred cCccccceeEEEeCCeeEEEECCHhHHHHHHH-hc----CChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEE
Confidence 478999998 57899999999999999998 45 44569999999999999999999999998887666799999
Q ss_pred cCccHHHHHHHHHHHHHhhccccc--cccc----cccccCCCccCcccCCCC--CC-CCCchhHHHHHhh-CCccEEEEE
Q psy16250 200 APRQIITWLSVYAARFESVGHLYR--LVPL----SLFNTKGLIEGTEQHGQN--RP-ALDPDTVQILSSL-GLESMTTCL 269 (485)
Q Consensus 200 ~P~~~~~~L~~~~~~~~~l~~~~~--~v~~----~l~~~~~~~~~~~~~g~~--~p-~~~~~~~~~~~~l-Gl~~I~~~~ 269 (485)
+|++..+++...... ......+. .... ..+.....++.....|.. .+ ....+..+..+.+ ....++.++
T Consensus 90 gP~g~~~~~~~~~~~-~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~ 168 (292)
T COG1234 90 GPPGIKEFVETSLRL-SYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALK 168 (292)
T ss_pred CCcchhhhhhhhhhh-cccccceEEEEEEeccCceEEEEEecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHh
Confidence 999988877654321 11100110 0000 000001111212222211 11 0011111222100 022667788
Q ss_pred eccC----CCccEEEEEE-eCCcEEEEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcC
Q psy16250 270 VRHC----PNAFGVTMVT-KSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMR 344 (485)
Q Consensus 270 v~H~----~~a~G~~i~~-~~G~kIvYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ 344 (485)
+.|+ ..++++++.. ..|++|+|||||+||++++++++|||||||||||.++..+.|...+|||..||+++|+++|
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~~~a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~ 248 (292)
T COG1234 169 AGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELIDLAKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAG 248 (292)
T ss_pred CCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHHHHhcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcC
Confidence 8888 5666666654 3568999999999999999999999999999999999887777777999999999999999
Q ss_pred CCEEEEecCCCCCC-ChHHH----hhhcCcceeeeccCcEeec
Q psy16250 345 AKFVLLTHFSQRYA-KLPRL----NKDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 345 ak~liLTHfS~ry~-~~~~l----~~~~~~~v~iA~Dgm~i~l 382 (485)
||+++|||||+||+ ....+ ...+++++.+|.|+|++++
T Consensus 249 vk~LiLtH~s~ry~~~~~~~~~ea~~~f~~~~~~a~D~~~~~v 291 (292)
T COG1234 249 VKKLILTHFSPRYPKDDEELLKEARAIFPGETIVARDGLVFEV 291 (292)
T ss_pred CCeEEEEeecccccchHHHHHHHHHHhCCCceEEeccceEEec
Confidence 99999999999997 32222 2345556999999999876
No 3
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=4.4e-38 Score=318.39 Aligned_cols=230 Identities=29% Similarity=0.412 Sum_probs=179.6
Q ss_pred cceeeeeee---c-C---CceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCce
Q psy16250 123 KQVLAIRGP---G-P---DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECK 195 (485)
Q Consensus 123 ~k~RNvS~~---~-~---~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~p 195 (485)
++.||+||+ . + +..+|||||+|++.+|.+ .+ ..+.+|++|||||.|+||+.|++.++..++..+...+
T Consensus 12 ~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~-~~----i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~ 86 (303)
T TIGR02649 12 TRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLH-TA----FNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQP 86 (303)
T ss_pred CCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHH-hC----CCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCC
Confidence 479999999 2 1 378999999999999887 45 3468999999999999999999999887665445678
Q ss_pred eEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCC
Q psy16250 196 LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPN 275 (485)
Q Consensus 196 L~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~ 275 (485)
+.||||.++.+.+..+...... ...+ +..+..-. .+ +.+ ..|...|+++++.|..+
T Consensus 87 l~Iygp~~~~~~l~~~~~~~~~-~~~~---~~~~~~i~--------~~-----------~~~-~~~~~~v~~~~~~H~~~ 142 (303)
T TIGR02649 87 LTIYGPQGIREFVETALRISGS-WTDY---PLEIVEIG--------AG-----------EIL-DDGLRKVTAYPLEHPLE 142 (303)
T ss_pred eEEEechhHHHHHHHHHHhccc-ccCC---ceEEEEcC--------CC-----------ceE-ecCCeEEEEEEccCccc
Confidence 9999999998877654321110 0000 00000000 00 011 23545999999999999
Q ss_pred ccEEEEEEe-------------------------------------------------CCcEEEEECCCCCchhHHHhhc
Q psy16250 276 AFGVTMVTK-------------------------------------------------SGHKITYSGDTMPCDALVSIGK 306 (485)
Q Consensus 276 a~G~~i~~~-------------------------------------------------~G~kIvYSGDT~p~~~l~~~~~ 306 (485)
|+||+|+.. .|++|+|+|||+|++.++++++
T Consensus 143 ~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~ 222 (303)
T TIGR02649 143 CYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAK 222 (303)
T ss_pred eEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHHHHHHhc
Confidence 999999842 4789999999999999999999
Q ss_pred CCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCCh--HHH----hhhcCcceeeeccCcEe
Q psy16250 307 NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKL--PRL----NKDLSENVGIAFDNMRF 380 (485)
Q Consensus 307 ~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~~--~~l----~~~~~~~v~iA~Dgm~i 380 (485)
+||+|||||||.+++.+.|..++|+|++||+++|+++++++++|||||+||++. ..+ .+.+ .++.+|.|||++
T Consensus 223 ~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~-~~~~~a~d~~~~ 301 (303)
T TIGR02649 223 GVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIF-PATELANDFTVF 301 (303)
T ss_pred CCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHC-CCCEecccccEE
Confidence 999999999999888877888999999999999999999999999999999863 222 2234 468999999998
Q ss_pred ec
Q psy16250 381 PE 382 (485)
Q Consensus 381 ~l 382 (485)
.+
T Consensus 302 ~~ 303 (303)
T TIGR02649 302 NV 303 (303)
T ss_pred eC
Confidence 64
No 4
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=6.8e-37 Score=308.36 Aligned_cols=231 Identities=32% Similarity=0.424 Sum_probs=179.9
Q ss_pred ceeeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEc
Q psy16250 124 QVLAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLA 200 (485)
Q Consensus 124 k~RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~ 200 (485)
+.||++|+ .++..||||||+|+..|+.+ .| ..+.+|++|||||.|+||+.|++.++..++..++..++.||+
T Consensus 14 ~~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~-~~----~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~ 88 (299)
T TIGR02651 14 KERNLPSIALKLNGELWLFDCGEGTQRQMLR-SG----ISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYG 88 (299)
T ss_pred CCCCCceEEEEECCeEEEEECCHHHHHHHHH-cC----CCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEEC
Confidence 57999998 56789999999999999987 45 345789999999999999999999988765444556899999
Q ss_pred CccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEE
Q psy16250 201 PRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVT 280 (485)
Q Consensus 201 P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~ 280 (485)
|.++.+++......+.. ...+.+ .+....+ + . ..+ ..+..+|+++++.|..+++||+
T Consensus 89 p~~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~--------~------~----~~~-~~~~~~v~~~~~~H~~~~~gy~ 145 (299)
T TIGR02651 89 PPGIKEFIETSLRVSYT-YLNYPI---KIHEIEE--------G------G----LVF-EDDGFKVEAFPLDHSIPSLGYR 145 (299)
T ss_pred CccHHHHHHHHHHHccc-CCCceE---EEEEccC--------C------C----ceE-ecCCEEEEEEEcCCCCceEEEE
Confidence 99998887654321110 000000 0000000 0 0 001 2344599999999999999999
Q ss_pred EEEe-------------------------------------------------CCcEEEEECCCCCchhHHHhhcCCChh
Q psy16250 281 MVTK-------------------------------------------------SGHKITYSGDTMPCDALVSIGKNSDLL 311 (485)
Q Consensus 281 i~~~-------------------------------------------------~G~kIvYSGDT~p~~~l~~~~~~aDLL 311 (485)
|+.. .|++|+|+|||++++.++++++++|+|
T Consensus 146 i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~~~~~~~~dlL 225 (299)
T TIGR02651 146 FEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEVIEFAKNADLL 225 (299)
T ss_pred EEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHHHHHHcCCCEE
Confidence 9853 267999999999999999999999999
Q ss_pred hhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCChHHH---hhhcCcceeeeccCcEeec
Q psy16250 312 IHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRL---NKDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 312 IhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~~~~l---~~~~~~~v~iA~Dgm~i~l 382 (485)
||||||.++..+.+..++|+|++||+++++++++++++|||||++|.....+ .+....++.+|+|||+|++
T Consensus 226 i~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 226 IHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFPNTYIAEDFMEIEI 299 (299)
T ss_pred EEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCCCcEEccCccEeeC
Confidence 9999999887777778999999999999999999999999999999874333 1233468999999999864
No 5
>PRK00055 ribonuclease Z; Reviewed
Probab=100.00 E-value=4.8e-33 Score=275.29 Aligned_cols=238 Identities=32% Similarity=0.438 Sum_probs=170.8
Q ss_pred ceeeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEc
Q psy16250 124 QVLAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLA 200 (485)
Q Consensus 124 k~RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~ 200 (485)
..|+.+|+ .++..||||||+|+..++.+ .+ ..+.+|++|||||.|+||+.||+.++..++..++..++.||+
T Consensus 16 ~~r~~~~~li~~~~~~iLiD~G~g~~~~l~~-~~----~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~ 90 (270)
T PRK00055 16 PTRNVSSILLRLGGELFLFDCGEGTQRQLLK-TG----IKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYG 90 (270)
T ss_pred CCCCCCEEEEEECCcEEEEECCHHHHHHHHH-cC----CCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEEC
Confidence 46778877 56789999999999999887 34 346789999999999999999999987766544567999999
Q ss_pred CccHHHHHHHHHHHHHhhcccccccccc---ccccCCCccCcccCCCCCCCCCchhHHHHHhh--CCccEEEEEeccC--
Q psy16250 201 PRQIITWLSVYAARFESVGHLYRLVPLS---LFNTKGLIEGTEQHGQNRPALDPDTVQILSSL--GLESMTTCLVRHC-- 273 (485)
Q Consensus 201 P~~~~~~L~~~~~~~~~l~~~~~~v~~~---l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~l--Gl~~I~~~~v~H~-- 273 (485)
|+++...+.........+ .+.+.... .+.... ....+. ... ..+..+ |. .+ ....|.
T Consensus 91 p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~-----~~~--~~~~~~~~g~-~~--~~~~~~~i 154 (270)
T PRK00055 91 PKGIKEFVETLLRASGSL--GYRIAEKDKPGKLDAEK----LKALGV-----PPG--PLFGKLKRGE-DV--TLEDGRII 154 (270)
T ss_pred CccHHHHHHHHHHHhhce--eEEEEEcCCCCCCCHHH----HHHCCC-----CCC--chHHHhhCCC-eE--EeCCCcEE
Confidence 999988776543221111 01110000 000000 000000 000 011111 22 22 222343
Q ss_pred CCccEEEEEEeCCcEEEEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecC
Q psy16250 274 PNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHF 353 (485)
Q Consensus 274 ~~a~G~~i~~~~G~kIvYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHf 353 (485)
.+++||+++ .+|++|+|+|||++++.+.++++++|+|||||||.+...+.+..++|+|++||+++++++++++++||||
T Consensus 155 ~~~~~~~~~-~~g~~~~y~~Dt~~~~~~~~~~~~~d~li~E~~~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~~vl~H~ 233 (270)
T PRK00055 155 NPADVLGPP-RKGRKVAYCGDTRPCEALVELAKGADLLVHEATFGDEDEELAKEYGHSTARQAAEIAKEAGVKRLILTHF 233 (270)
T ss_pred eHHHeeccC-CCCcEEEEeCCCCCcHHHHHHhCCCCEEEEeccCCcchhhHHhhcCCCCHHHHHHHHHHcCCCEEEEEee
Confidence 268999998 5789999999999999999999999999999999988776777889999999999999999999999999
Q ss_pred CCCCCC-hHH----HhhhcCcceeeeccCcEeeccc
Q psy16250 354 SQRYAK-LPR----LNKDLSENVGIAFDNMRFPEKK 384 (485)
Q Consensus 354 S~ry~~-~~~----l~~~~~~~v~iA~Dgm~i~l~~ 384 (485)
|++|.. ... +.+.+ ++|.+|+|||+|+|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~~ 268 (270)
T PRK00055 234 SPRYTGDPEELLKEAREIF-PNTELAEDLMRVEVPF 268 (270)
T ss_pred ccccCCCHHHHHHHHHHHc-CCcEEccCCcEEEecC
Confidence 999973 322 22334 6899999999999854
No 6
>PRK02113 putative hydrolase; Provisional
Probab=99.97 E-value=5.9e-31 Score=259.10 Aligned_cols=216 Identities=21% Similarity=0.253 Sum_probs=162.2
Q ss_pred cceeeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEE
Q psy16250 123 KQVLAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLL 199 (485)
Q Consensus 123 ~k~RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~ 199 (485)
+..|+.|++ .++..||||||+|+..|+.+ .+ +.+|++|||||.|+||+.|++.++... +..++.||
T Consensus 30 ~~~R~~~s~li~~~~~~iLiD~G~g~~~~l~~-~~------~~~id~I~lTH~H~DH~~gl~~l~~~~----~~~~~~i~ 98 (252)
T PRK02113 30 RDNRLRTSALVETEGARILIDCGPDFREQMLR-LP------FGKIDAVLITHEHYDHVGGLDDLRPFC----RFGEVPIY 98 (252)
T ss_pred CCcceeeEEEEEECCeEEEEECCchHHHHHHh-cC------ccccCEEEECCCChhhhCCHHHHHHhc----cCCCceEE
Confidence 478999988 57889999999999998877 33 678999999999999999999886432 34689999
Q ss_pred cCccHHHHHHHHHH-HHHhhccccccccc-cccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccC-CCc
Q psy16250 200 APRQIITWLSVYAA-RFESVGHLYRLVPL-SLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHC-PNA 276 (485)
Q Consensus 200 ~P~~~~~~L~~~~~-~~~~l~~~~~~v~~-~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~-~~a 276 (485)
+|+.+.+++..... .+... .+..++. .+.. . ..| +.+ .+|..+|+++++.|. ..+
T Consensus 99 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~---~-----~~g-----------~~~-~~~~~~i~~~~~~H~~~~~ 156 (252)
T PRK02113 99 AEQYVAERLRSRMPYCFVEH--SYPGVPNIPLRE---I-----EPD-----------RPF-LVNHTEVTPLRVMHGKLPI 156 (252)
T ss_pred ECHHHHHHHHhhCCeeeccC--CCCCCcceeeEE---c-----CCC-----------CCE-EECCeEEEEEEecCCCccE
Confidence 99998887754211 00000 0000000 0000 0 000 012 234459999999997 479
Q ss_pred cEEEEEEeCCcEEEEECCCCC-chhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCC
Q psy16250 277 FGVTMVTKSGHKITYSGDTMP-CDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQ 355 (485)
Q Consensus 277 ~G~~i~~~~G~kIvYSGDT~p-~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ 355 (485)
+||++. +++|+|||.+ ++.+.++++++|+|||||++. +...+|+|++||+++++++++++++|||||+
T Consensus 157 ~gy~i~-----~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~------~~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~ 225 (252)
T PRK02113 157 LGYRIG-----KMAYITDMLTMPEEEYEQLQGIDVLVMNALRI------APHPTHQSLEEALENIKRIGAKETYLIHMSH 225 (252)
T ss_pred EEEEeC-----CEEEccCCCCCCHHHHHHhcCCCEEEEhhhcC------CCCCCcCCHHHHHHHHHHhCCCEEEEEcccc
Confidence 999992 7999999986 466778899999999999863 2457899999999999999999999999999
Q ss_pred CCCChHHHhhhcCcceeeeccCcEeec
Q psy16250 356 RYAKLPRLNKDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 356 ry~~~~~l~~~~~~~v~iA~Dgm~i~l 382 (485)
+|+...++.+.+..++.+|+|||+|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 226 HIGLHADVEKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred cchhHHHHHHhCCCCceeccCceEEeC
Confidence 997666665666668999999999863
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.97 E-value=6e-30 Score=251.99 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=156.0
Q ss_pred Ccceeeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEE
Q psy16250 122 GKQVLAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTL 198 (485)
Q Consensus 122 ~~k~RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V 198 (485)
+++.|+.|++ .++..||||||.+... +.+ ...+|++|||||.|.||+.|+..+... ...++.|
T Consensus 31 p~~~r~~~s~li~~~~~~iLiD~G~~~~~---~~~------~~~~i~~i~iTH~H~DHi~gl~~l~~~-----~~~~i~i 96 (250)
T PRK11244 31 PAYRRRPCSALIEFNGARTLIDAGLPDLA---ERF------PPGSLQQILLTHYHMDHVQGLFPLRWG-----VGDPIPV 96 (250)
T ss_pred CCCCcceeEEEEEECCCEEEEECCChHHh---hcC------CcccCCEEEEccCchhhhccHHHHHhh-----cCCceeE
Confidence 4578899888 5678999999976532 222 257899999999999999999777432 3468999
Q ss_pred EcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccE
Q psy16250 199 LAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFG 278 (485)
Q Consensus 199 ~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G 278 (485)
|+|..+..+...+. .. ....+. ..+.. | +.+ .+|..+|+++++.|+.+++|
T Consensus 97 ~~~~~~~~~~~~~~----~~-~~~~~~--~~l~~----------~-----------~~~-~~~~~~I~~~~~~H~~~s~g 147 (250)
T PRK11244 97 YGPPDPEGCDDLFK----HP-GILDFS--HPLEP----------F-----------EPF-DLGGLQVTPLPLNHSKLTFG 147 (250)
T ss_pred EeCCchhhHHHHhc----Cc-cccccc--cccCC----------C-----------CCe-eECCEEEEEEeeCCCcceeE
Confidence 99987653322110 00 000000 00100 0 012 34556999999999999999
Q ss_pred EEEEEeCCcEEEEECCCCCc-hhHHHhh--cCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCC
Q psy16250 279 VTMVTKSGHKITYSGDTMPC-DALVSIG--KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQ 355 (485)
Q Consensus 279 ~~i~~~~G~kIvYSGDT~p~-~~l~~~~--~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ 355 (485)
|+|+ .+|++|+|+|||.+. +.+.++. .++|+||||||+.+.. +..++|+++++|+++++++++++++||||++
T Consensus 148 ~~i~-~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~---~~~~~H~~~~~a~~~a~~~~~k~lvltH~~~ 223 (250)
T PRK11244 148 YLLE-TAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQE---DAPRNHNDLTTALAIIEVLRPPRVILTHISH 223 (250)
T ss_pred EEEe-cCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCC---CCCCCCCCHHHHHHHHHhcCCceEEEEcccC
Confidence 9999 578899999999875 4565553 5899999999998643 2457899999999999999999999999999
Q ss_pred CCCChHHHhhhcCcceeeeccCcEeec
Q psy16250 356 RYAKLPRLNKDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 356 ry~~~~~l~~~~~~~v~iA~Dgm~i~l 382 (485)
++.+.......+..++.+|+|||++.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 224 QLDAWLMENAALPSGVEVAYDGMEIGL 250 (250)
T ss_pred CcchhhhhhhhcCCceEEecCccEeeC
Confidence 887532222345578999999999864
No 8
>PRK02126 ribonuclease Z; Provisional
Probab=99.96 E-value=1.7e-29 Score=258.42 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=151.0
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.++..+|||||+ ..++.+ ..+.+|++|||||.|+||+.|++.|+...+ ++..++.||||.++.++++..
T Consensus 25 ~~~~~iLiD~G~--~~~l~~-------~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~--~r~~~l~iygp~~~~~~l~~~ 93 (334)
T PRK02126 25 FERRALLFDLGD--LHHLPP-------RELLRISHIFVSHTHMDHFIGFDRLLRHCL--GRPRRLRLFGPPGFADQVEHK 93 (334)
T ss_pred CCCeEEEEcCCC--HHHHhh-------cCCCccCEEEEcCCChhHhCcHHHHHHHhc--cCCCCeEEEECHHHHHHHHHH
Confidence 357889999999 566655 236789999999999999999999986543 356789999999999988764
Q ss_pred HHHHH-----hhccccccccccccccCCCcc--CcccCCCCCC--CCCch-hHHHHHhhCCccEEEEEeccCCCccEEEE
Q psy16250 212 AARFE-----SVGHLYRLVPLSLFNTKGLIE--GTEQHGQNRP--ALDPD-TVQILSSLGLESMTTCLVRHCPNAFGVTM 281 (485)
Q Consensus 212 ~~~~~-----~l~~~~~~v~~~l~~~~~~~~--~~~~~g~~~p--~~~~~-~~~~~~~lGl~~I~~~~v~H~~~a~G~~i 281 (485)
...+. .+...+.+....+ ....... .....+.... ..... ....+ ..+..+|+++++.|..+|+||+|
T Consensus 94 ~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~V~a~~~~H~vp~~gy~~ 171 (334)
T PRK02126 94 LAGYTWNLVENYPTTFRVHEVEL-HDGRIRRALFSCRRAFAREAEEELSLPDGVLL-DEPWFRVRAAFLDHGIPCLAFAL 171 (334)
T ss_pred hccccccCcccCCCceEEEEEEc-cCccceeeeecccccccccccccccCCCCeEE-eCCCEEEEEEEccCCCceeEEEE
Confidence 32110 0111111110010 0000000 0000000000 00000 00112 23445999999999999999999
Q ss_pred EEe------------------------------------------------------------------CCcEEEEECCC
Q psy16250 282 VTK------------------------------------------------------------------SGHKITYSGDT 295 (485)
Q Consensus 282 ~~~------------------------------------------------------------------~G~kIvYSGDT 295 (485)
+.. .|.+|+|+|||
T Consensus 172 ~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT 251 (334)
T PRK02126 172 EEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDI 251 (334)
T ss_pred EecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCC
Confidence 831 36799999999
Q ss_pred CCch----hHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCC
Q psy16250 296 MPCD----ALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAK 359 (485)
Q Consensus 296 ~p~~----~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~ 359 (485)
.+++ .+++++++||+|||||||.++..+.+..++|+|+++|+++|+++++++++|||||++|..
T Consensus 252 ~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~ 319 (334)
T PRK02126 252 GYTEENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQG 319 (334)
T ss_pred CCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCC
Confidence 9986 478889999999999999988877778899999999999999999999999999999965
No 9
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.96 E-value=9.3e-29 Score=250.17 Aligned_cols=230 Identities=16% Similarity=0.122 Sum_probs=156.3
Q ss_pred cceeeeeee---cCC-ceEEEeCCCCHHHHHHHHhC-C--cccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCce
Q psy16250 123 KQVLAIRGP---GPD-TCILLDCGEGTYSQLVRLYG-S--AVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECK 195 (485)
Q Consensus 123 ~k~RNvS~~---~~~-~~ILlDcGegt~~qL~r~~G-~--~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~p 195 (485)
+..|..||+ .++ ..||||||+|++.||.+ ++ . .....+.+|++|||||.|+||+.||+.+. ...+
T Consensus 34 ~~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~-~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~-------~~~~ 105 (302)
T PRK05184 34 AKPRTQSSIAVSADGEDWVLLNASPDIRQQIQA-TPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLR-------EGQP 105 (302)
T ss_pred CCcccccEEEEEcCCCEEEEEECChhHHHHHHh-chhcCccccCCcccccEEEEeCCchhhhhChHhhc-------cCCC
Confidence 467888887 333 46999999999999988 32 1 11134668999999999999999998772 2468
Q ss_pred eEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHh--hCCccEEEEEeccC
Q psy16250 196 LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSS--LGLESMTTCLVRHC 273 (485)
Q Consensus 196 L~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~--lGl~~I~~~~v~H~ 273 (485)
|.||+|.++.+.+......|... ..+..+....+.. + +.++. .+..+|+++++.|.
T Consensus 106 l~Vyg~~~~~~~l~~~~~~f~~~-~~~~~~~~~~i~~----------~-----------~~~~i~~~~~~~Vt~~~v~H~ 163 (302)
T PRK05184 106 FPVYATPAVLEDLSTGFPIFNVL-DHYGGVQRRPIAL----------D-----------GPFAVPGLPGLRFTAFPVPSK 163 (302)
T ss_pred eEEEeCHHHHHHHHhcCCccccc-ccccceeeEEecC----------C-----------CceEecCCCCcEEEEEEcCCC
Confidence 99999999888775421111110 0000000000000 0 00111 12339999999763
Q ss_pred -------------CCccEEEEE-EeCCcEEEEECCC-CCchhHHHhhcCCChhhhccCCCchHHHH--------HhcCCC
Q psy16250 274 -------------PNAFGVTMV-TKSGHKITYSGDT-MPCDALVSIGKNSDLLIHEATHEDELEKE--------AALKMH 330 (485)
Q Consensus 274 -------------~~a~G~~i~-~~~G~kIvYSGDT-~p~~~l~~~~~~aDLLIhEATf~d~~~e~--------A~~k~H 330 (485)
..|+||+|+ ..+|++++|++|+ .++++++++++++|+||+|||+..+.... ....+|
T Consensus 164 ~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~~~~~~~g~~~~~~~~~~H 243 (302)
T PRK05184 164 APPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTDDEMIRAGVGTKTGRRMGH 243 (302)
T ss_pred CCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcCHHHHhcccCccccccCCC
Confidence 469999995 2578899999776 78999999999999999999954332211 124578
Q ss_pred CcH---HHHHHHHHHcCCCEEEEecCCCCCCCh----HHHhhhcCcceeeeccCcEeec
Q psy16250 331 STV---SQAIRIGREMRAKFVLLTHFSQRYAKL----PRLNKDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 331 sT~---~eAi~va~~~~ak~liLTHfS~ry~~~----~~l~~~~~~~v~iA~Dgm~i~l 382 (485)
++. .++++.+.+.++++++|||+|+.+|.. +........++.+|+|||+|.+
T Consensus 244 ~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~~~~~~~~~~~~~A~DGm~i~l 302 (302)
T PRK05184 244 LPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSPERAELEAAGIEVAHDGMEIEL 302 (302)
T ss_pred CCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCHHHHHHHhCCCEEccCCcEEeC
Confidence 884 567899999999999999999876532 1111112257899999999864
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.95 E-value=7.8e-28 Score=235.16 Aligned_cols=211 Identities=21% Similarity=0.283 Sum_probs=150.3
Q ss_pred cceeeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEE
Q psy16250 123 KQVLAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLL 199 (485)
Q Consensus 123 ~k~RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~ 199 (485)
++.|+.|++ .++..||||||.+... +.+ ...+|++|||||.|.||+.|+..++.. ...++.||
T Consensus 22 ~~~r~~~s~~i~~~~~~iliD~G~~~~~---~~~------~~~~id~i~iTH~H~DHi~gl~~l~~~-----~~~~~~v~ 87 (238)
T TIGR03307 22 DYRRQPCSAVIEFNGARTLIDAGLTDLA---ERF------PPGSLQAILLTHYHMDHVQGLFPLRWG-----VGEPIPVY 87 (238)
T ss_pred cccCcceEEEEEECCcEEEEECCChhHh---hcc------CccCCCEEEEecCchhhhcchHHHHHh-----cCCceeEE
Confidence 357888877 5678999999976532 222 256899999999999999999776431 24579999
Q ss_pred cCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEE
Q psy16250 200 APRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGV 279 (485)
Q Consensus 200 ~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~ 279 (485)
+|..+.... .. +... ....+. ..+. .+ +.+ .+|..+|+++++.|...++||
T Consensus 88 ~~~~~~~~~-~~---~~~~-~~~~~~--~~~~----------~~-----------~~~-~~~~~~i~~~~~~H~~~~~g~ 138 (238)
T TIGR03307 88 GPPDEEGCD-DL---FKHP-GILDFS--KPLE----------AF-----------EPF-DLGGLRVTPLPLVHSKLTFGY 138 (238)
T ss_pred eCchHhhHH-HH---hcCc-cccccc--cccc----------CC-----------ceE-EECCEEEEEEecCCCCcceEE
Confidence 999865321 11 1100 000000 0000 00 012 235559999999999899999
Q ss_pred EEEEeCCcEEEEECCCCC-chhHHHhhc--CCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCC
Q psy16250 280 TMVTKSGHKITYSGDTMP-CDALVSIGK--NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQR 356 (485)
Q Consensus 280 ~i~~~~G~kIvYSGDT~p-~~~l~~~~~--~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~r 356 (485)
+|+ .+|++++|+|||.+ .+.+.++.+ ++|+||+||++..... ..++|+++.+|+++++++++++++||||+++
T Consensus 139 ~i~-~~~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~---~~~~H~~~~~~~~~~~~~~~~~lil~H~~~~ 214 (238)
T TIGR03307 139 LLE-TDGQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSD---APRNHNDLTRALAINEQLRPKQVILTHISHQ 214 (238)
T ss_pred EEe-cCCcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCcccc---CCCCcCCHHHHHHHHHHcCCCEEEEEecccc
Confidence 998 58889999999986 455666654 7999999999975432 3478999999999999999999999999998
Q ss_pred CCChHHHhhhcCcceeeeccCcEe
Q psy16250 357 YAKLPRLNKDLSENVGIAFDNMRF 380 (485)
Q Consensus 357 y~~~~~l~~~~~~~v~iA~Dgm~i 380 (485)
......-......++.+|+|||+|
T Consensus 215 ~~~~~~~~~~~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 215 LDAWLMENPDLPSGVAVGYDGQTL 238 (238)
T ss_pred cchHHHhhhhcCCceEEecccccC
Confidence 764321111245679999999984
No 11
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.95 E-value=1.3e-27 Score=235.57 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=144.6
Q ss_pred cCCceEEEe-CCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhc-cCCCceeEEEcCccHHHHHH
Q psy16250 132 GPDTCILLD-CGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSR-VKPECKLTLLAPRQIITWLS 209 (485)
Q Consensus 132 ~~~~~ILlD-cGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~-~~~~~pL~V~~P~~~~~~L~ 209 (485)
.....|||| +|+|....|.. .+..++.|||||.|.||++||+.++..+.. .++.+|+.||+|+++...++
T Consensus 16 ~~~~~ilfD~ag~g~~~~l~~--------k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve 87 (277)
T TIGR02650 16 YSPEEIIFDAAEEGSSTLGGK--------KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEE 87 (277)
T ss_pred ECchhheehhhcccchhHHhh--------hHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHH
Confidence 566789999 99998766544 367899999999999999999888774432 24667899999999877777
Q ss_pred HHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhC-CccEEEEEeccCC---CccEEEEEE--
Q psy16250 210 VYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLG-LESMTTCLVRHCP---NAFGVTMVT-- 283 (485)
Q Consensus 210 ~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lG-l~~I~~~~v~H~~---~a~G~~i~~-- 283 (485)
++...+..+.....+ +..+ ... .|. .. ......| ...|+++++.|.. +|+||+|..
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~---~~~------~~~-----e~---~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r 149 (277)
T TIGR02650 88 ETSEFIKAANEDLFF-FFNH---HLE------EED-----ER---FFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERR 149 (277)
T ss_pred HHHHHHHHhhhhhcc-Cccc---CCC------CCC-----cE---EEeecCCccEEEecCccccccCccCccCeEEEEEe
Confidence 554433332211000 0000 000 000 00 0011111 2378899999996 799999874
Q ss_pred -----------------------------eCCcEEEEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHH
Q psy16250 284 -----------------------------KSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVS 334 (485)
Q Consensus 284 -----------------------------~~G~kIvYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~ 334 (485)
..+++|+|||||+||+. +++.+||+|||||||.++... ..++|+|..
T Consensus 150 ~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~--~~a~~adlLIhEaTf~d~~~~--~~~gH~t~~ 225 (277)
T TIGR02650 150 KKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD--EEEEGGEELIHECCFFDDADD--RRKKHAAAD 225 (277)
T ss_pred ecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh--HHhcCCCEEEEeccccccccc--ccCCCCCHH
Confidence 11379999999999975 788999999999999988653 357899999
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCC
Q psy16250 335 QAIRIGREMRAKFVLLTHFSQRYAK 359 (485)
Q Consensus 335 eAi~va~~~~ak~liLTHfS~ry~~ 359 (485)
||+++|+++++++++|||||+||..
T Consensus 226 eaa~~A~~a~vk~LiLtH~Ssry~~ 250 (277)
T TIGR02650 226 DEMEESKKAAGKKKIILHHISRRII 250 (277)
T ss_pred HHHHHHHHcCCCEEEEEeecccccH
Confidence 9999999999999999999999965
No 12
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.94 E-value=1.3e-26 Score=234.09 Aligned_cols=231 Identities=16% Similarity=0.198 Sum_probs=159.3
Q ss_pred cceeeeeee----cCCceEEEeCCCCHHHHHHHHhCC---cccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCce
Q psy16250 123 KQVLAIRGP----GPDTCILLDCGEGTYSQLVRLYGS---AVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECK 195 (485)
Q Consensus 123 ~k~RNvS~~----~~~~~ILlDcGegt~~qL~r~~G~---~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~p 195 (485)
.+.|..||+ .++..||||||+++..|+.+ ++. .....+.+|++|||||.|+||+.||+.|. ...+
T Consensus 33 ~~~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~-~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~-------~~~~ 104 (302)
T TIGR02108 33 AKARTQSSIAVSADGERWVLLNASPDIRQQIQA-TPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLR-------EGQP 104 (302)
T ss_pred CccccccEEEEEeCCCEEEEEECCHHHHHHHHh-CcccccccCCCcccCCEEEEeCCCcchhhCHHHHc-------CCCC
Confidence 457888877 35568999999999999988 420 00144679999999999999999998883 2358
Q ss_pred eEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEec----
Q psy16250 196 LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVR---- 271 (485)
Q Consensus 196 L~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~---- 271 (485)
|.||++.++.+.|..+. .|..+. .+. +....+.... .+........| .+|+++++.
T Consensus 105 lpVya~~~t~~~L~~~~-~~~~~~-~~~-~~~~~i~~~~----------------~~~~~~~~~~g-~~I~~f~v~h~~~ 164 (302)
T TIGR02108 105 FTLYATEMVLQDLSDNP-IFNVLD-HWN-VRRQPIALNE----------------KFEFRIVARPG-LEFTPFAVPGKAP 164 (302)
T ss_pred ceEEECHHHHHHHHhCC-Cccccc-hhh-ccceEecCCC----------------cEEecccccCC-EEEEEEEcCCCCC
Confidence 99999999998886421 121111 000 0000000000 00000000113 499999999
Q ss_pred ----c--C----CCccEEEEEEeC--CcEEEEECCCC-CchhHHHhhcCCChhhhccCC-CchHHHH-------HhcCCC
Q psy16250 272 ----H--C----PNAFGVTMVTKS--GHKITYSGDTM-PCDALVSIGKNSDLLIHEATH-EDELEKE-------AALKMH 330 (485)
Q Consensus 272 ----H--~----~~a~G~~i~~~~--G~kIvYSGDT~-p~~~l~~~~~~aDLLIhEATf-~d~~~e~-------A~~k~H 330 (485)
| . ..++||+|+ .+ |++++|++||. ++++++++++++|+||+||+| .++.... ....+|
T Consensus 165 ~~~~H~~~d~~~~~~~Gy~i~-~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~~~d~e~l~~g~ypri~~~~gH 243 (302)
T TIGR02108 165 LYSEHRAGDPHPGDTLGLKIE-DGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTLWRDDEMIRAGVGTKTGRRMGH 243 (302)
T ss_pred ccccccccCCCCCCcEEEEEE-eCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCCCCcHHHHhcCCCCCcCCCCCC
Confidence 5 1 368999998 46 89999999997 788999999999999999995 4433211 135678
Q ss_pred CcHH---HHHHHHHHcCCCEEEEecCCCCCCChH---HHhhhc-CcceeeeccCcEeec
Q psy16250 331 STVS---QAIRIGREMRAKFVLLTHFSQRYAKLP---RLNKDL-SENVGIAFDNMRFPE 382 (485)
Q Consensus 331 sT~~---eAi~va~~~~ak~liLTHfS~ry~~~~---~l~~~~-~~~v~iA~Dgm~i~l 382 (485)
++.. +|++.+.+.++++++|||+|+..|-.. ...+.+ ..+|.+|+|||+|.+
T Consensus 244 ls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~~~~~~~~~~~~~ayDG~~~~l 302 (302)
T TIGR02108 244 VSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSPERAEVEAAGWEVAYDGMEIVL 302 (302)
T ss_pred CCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCHHHHHHHHcCCEEecCCcEEeC
Confidence 8776 777777888999999999999876321 222222 378999999999864
No 13
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.92 E-value=1.9e-24 Score=202.81 Aligned_cols=185 Identities=32% Similarity=0.463 Sum_probs=133.5
Q ss_pred ceEEEeCCCCHHHHHHHHhC---CcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 135 TCILLDCGEGTYSQLVRLYG---SAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 135 ~~ILlDcGegt~~qL~r~~G---~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.+||||||.|.. ++. ++ ......+.+|++|||||.|+||+.|++.++..+..... .||||+.+.+.+..+
T Consensus 1 ~~iLiD~g~~~~-~~~--~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~----~i~~~~~~~~~l~~~ 73 (194)
T PF12706_consen 1 HRILIDCGPGTR-SLR--LRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK----PIYGPPETKEFLREY 73 (194)
T ss_dssp SEEEESE-TTHH-HHT--HCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT----EEEECHHHHHHHHHH
T ss_pred CEEEEeCCCCcc-ccc--ccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc----eEEecHHHHHHHHhh
Confidence 369999999987 551 12 00111234899999999999999999999988765322 899999999998843
Q ss_pred HHHHHhhccccccccc-cccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccE----EEEEEeCC
Q psy16250 212 AARFESVGHLYRLVPL-SLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFG----VTMVTKSG 286 (485)
Q Consensus 212 ~~~~~~l~~~~~~v~~-~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G----~~i~~~~G 286 (485)
........ ..... .+..... | ..+ ..|..+|+++++.|+.++++ |+|+ .+|
T Consensus 74 ~~~~~~~~---~~~~~~~~~~~~~--------~-----------~~~-~~~~~~i~~~~~~H~~~~~~~~~g~~i~-~~~ 129 (194)
T PF12706_consen 74 KFGILDLY---PEEDNFDIIEISP--------G-----------DEF-EIGDFRITPFPANHGPPSYGGNKGFVIE-PDG 129 (194)
T ss_dssp HHTHHTTC---CTTSGEEEEEECT--------T-----------EEE-EETTEEEEEEEEESSSCCEEECCEEEEE-ETT
T ss_pred hccccccc---ccccceeEEEecc--------C-----------ceE-EeceEEEEEEeccccccccccCceEEEe-cCC
Confidence 11111110 00000 0110000 0 001 24556899999999998877 9999 689
Q ss_pred cEEEEECCCCCchhHHHhhcCCChhhhccCCCchHHH-HHhcCCCCcHHHHHHHHHHcCCCEEEEecC
Q psy16250 287 HKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEK-EAALKMHSTVSQAIRIGREMRAKFVLLTHF 353 (485)
Q Consensus 287 ~kIvYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e-~A~~k~HsT~~eAi~va~~~~ak~liLTHf 353 (485)
++|+|+|||.+ .+.++ +++|+||+||++..+..+ .+....|+++++++++++++++++++|+||
T Consensus 130 ~~i~~~gD~~~--~~~~~-~~~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 130 KKIFYSGDTNY--DFEEL-KNIDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp EEEEEETSSSS--CHHHH-TTBSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred cceEEeeccch--hhhhh-ccCCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 99999999999 35444 999999999999987765 667899999999999999999999999997
No 14
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.76 E-value=1.9e-17 Score=160.20 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=132.3
Q ss_pred cCCceEEEeCCC---CHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHH
Q psy16250 132 GPDTCILLDCGE---GTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWL 208 (485)
Q Consensus 132 ~~~~~ILlDcGe---gt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L 208 (485)
.++..||+||+- +.. . +. . . ..++++|+|||.|.||+.|+..++. ...+.||+|.++..++
T Consensus 15 ~~~~~iLiDP~~~~~~~~-~----~~--~-~-~~~id~vliTH~H~DH~~~~~~~~~-------~~~~~v~~~~~~~~~~ 78 (228)
T PRK00685 15 TGGKKILIDPFITGNPLA-D----LK--P-E-DVKVDYILLTHGHGDHLGDTVEIAK-------RTGATVIANAELANYL 78 (228)
T ss_pred ECCEEEEECCCCCCCCCC-C----CC--h-h-cCcccEEEeCCCCccccccHHHHHH-------hCCCEEEEeHHHHHHH
Confidence 678899999853 211 1 11 1 1 1289999999999999999876543 1246799998877766
Q ss_pred HHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCC------------c
Q psy16250 209 SVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPN------------A 276 (485)
Q Consensus 209 ~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~------------a 276 (485)
.... +. .+ . .++. | +.+ .+|..+|+++|+.|+.. +
T Consensus 79 ~~~~--~~----~~--~---~~~~----------~-----------~~~-~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~ 125 (228)
T PRK00685 79 SEKG--VE----KT--H---PMNI----------G-----------GTV-EFDGGKVKLTPALHSSSFIDEDGITYLGNP 125 (228)
T ss_pred HhcC--CC----ce--e---eccC----------C-----------CcE-EECCEEEEEEEEEcCCCCcCCCCcccCCCc
Confidence 5321 00 00 0 0100 0 012 23445999999999764 5
Q ss_pred cEEEEEEeCCcEEEEECCCCCchhHHHhh--cCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCC
Q psy16250 277 FGVTMVTKSGHKITYSGDTMPCDALVSIG--KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFS 354 (485)
Q Consensus 277 ~G~~i~~~~G~kIvYSGDT~p~~~l~~~~--~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS 354 (485)
+||+|+. +|.+|+|+|||.+++++..+. .++|+++..+. ...|++++||++++++++++++|+||++
T Consensus 126 ~g~~i~~-~~~~i~~~GDt~~~~~~~~~~~~~~~D~~~~~~~----------~~~h~~~~ea~~~~~~~~~k~~v~~H~~ 194 (228)
T PRK00685 126 TGFVITF-EGKTIYHAGDTGLFSDMKLIGELHKPDVALLPIG----------DNFTMGPEDAALAVELIKPKIVIPMHYN 194 (228)
T ss_pred eEEEEEE-CCeEEEEecCccchhHHHHHHHhhCCCEEEEecC----------CccccCHHHHHHHHHhhCCCEEEEeccC
Confidence 9999994 778999999999988776654 47899997653 2469999999999999999999999997
Q ss_pred CCCC---ChHHHh---hhcCcceeeeccCcEeec
Q psy16250 355 QRYA---KLPRLN---KDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 355 ~ry~---~~~~l~---~~~~~~v~iA~Dgm~i~l 382 (485)
.... ....+. +.+..++.++.||+++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 195 TFPLIEQDPEKFKALVEGLGTKVVILKPGESIEL 228 (228)
T ss_pred CCcCCcCCHHHHHHHHHhcCCcEEECCCCCEeeC
Confidence 4211 122222 125678999999998754
No 15
>PRK04286 hypothetical protein; Provisional
Probab=99.76 E-value=5.3e-18 Score=171.51 Aligned_cols=226 Identities=14% Similarity=0.156 Sum_probs=132.7
Q ss_pred eeeeeee--cCCceEEEeCCCCHH-------------HHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhc
Q psy16250 125 VLAIRGP--GPDTCILLDCGEGTY-------------SQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSR 189 (485)
Q Consensus 125 ~RNvS~~--~~~~~ILlDcGegt~-------------~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~ 189 (485)
.||.+.. .++..||||+|.+.. ..+.. ....+...+.++++|||||.|+||+.|+..++...
T Consensus 13 ~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~-- 89 (298)
T PRK04286 13 VRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEE-VREKILEYAKKADVITISHYHYDHHTPFYEDPYEL-- 89 (298)
T ss_pred ceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHH-HHHHhhcccccCCEEEecCCccccCCCcccccccc--
Confidence 4555554 788999999995531 11211 11123356789999999999999999886553111
Q ss_pred cCCCceeEEEcCccHHH-----HHHHHHHHH--Hhhccccccccc-cccccCCCccCcccCCCCCCCCCchhHHHHHhhC
Q psy16250 190 VKPECKLTLLAPRQIIT-----WLSVYAARF--ESVGHLYRLVPL-SLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLG 261 (485)
Q Consensus 190 ~~~~~pL~V~~P~~~~~-----~L~~~~~~~--~~l~~~~~~v~~-~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lG 261 (485)
..+..++.||+...+.. ++.. ...+ ......+..... ..+.. | +.+ .+|
T Consensus 90 ~~~~~~i~iy~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~----------g-----------~~~-~ig 146 (298)
T PRK04286 90 SDEEIPKEIYKGKIVLIKDPTENINW-SQRRRAPRFLKAVKDIAKKIEYAD----------G-----------KTF-RFG 146 (298)
T ss_pred ccccchHHHhcCceecccCHHHHcCH-HHHhhHHhHHHHHHhcCCceEECC----------C-----------CEE-EEC
Confidence 01122455666544331 1100 0000 000000000000 00000 0 001 345
Q ss_pred CccEEEE-EeccCCC--ccEEEE----EEeCCcEEEEECCCC--CchhHHHhhc--CCChhhhccC--CCchHHHHHhcC
Q psy16250 262 LESMTTC-LVRHCPN--AFGVTM----VTKSGHKITYSGDTM--PCDALVSIGK--NSDLLIHEAT--HEDELEKEAALK 328 (485)
Q Consensus 262 l~~I~~~-~v~H~~~--a~G~~i----~~~~G~kIvYSGDT~--p~~~l~~~~~--~aDLLIhEAT--f~d~~~e~A~~k 328 (485)
..+|+++ ++.|... +.||++ + .+|++++|+|||. +++.+.+... ++|+||++|. +..+. ......
T Consensus 147 ~~~V~~~~~v~H~~~~~~~Gy~i~~ri~-~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~-ri~~~~ 224 (298)
T PRK04286 147 GTTIEFSPPVPHGADGSKLGYVIMVRIS-DGDESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGR-RLSEED 224 (298)
T ss_pred CEEEEEeccCCCCCCCCccceEEEEEEE-eCCEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhh-hhcccc
Confidence 5578855 8899753 666644 5 5789999999998 6788888776 9999999984 33211 111235
Q ss_pred CCCcHHHHHHHHHHcCCCEEEEe-cCCCCCCChHHH-------hhhcCcceeeeccCcEe
Q psy16250 329 MHSTVSQAIRIGREMRAKFVLLT-HFSQRYAKLPRL-------NKDLSENVGIAFDNMRF 380 (485)
Q Consensus 329 ~HsT~~eAi~va~~~~ak~liLT-HfS~ry~~~~~l-------~~~~~~~v~iA~Dgm~i 380 (485)
.|++.+.+.++++. ++++++|| |+|+.. +.+.+ ++.....+..|.|.|-+
T Consensus 225 ~h~s~~~~~~l~~~-~~k~liLtHHls~~~-n~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 282 (298)
T PRK04286 225 LEKGIENLEEIVKN-TPETLILDHHLLRDK-NYREKLKELYERAEDRGVRVLTAAEFLGL 282 (298)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEeccccccC-CcHHHHHHHHHHHhhcCceEEeHHHHcCC
Confidence 67888888888777 99999999 888764 33333 23344567889998874
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.72 E-value=3.5e-17 Score=173.20 Aligned_cols=200 Identities=16% Similarity=0.190 Sum_probs=128.3
Q ss_pred eeeeeee-cCCceEEEeCCCCHHHHHHHHhCCc--------ccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCce
Q psy16250 125 VLAIRGP-GPDTCILLDCGEGTYSQLVRLYGSA--------VDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECK 195 (485)
Q Consensus 125 ~RNvS~~-~~~~~ILlDcGegt~~qL~r~~G~~--------~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~p 195 (485)
-+|+..+ .++..+|||||.++..+ ..+|.+ ......++++|||||.|.||++|++.++..+ ..
T Consensus 13 G~n~~ll~~~~~~iliD~G~~~~~~--~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~------~~ 84 (422)
T TIGR00649 13 GKNMYVVEIDDDVFIFDAGILFPED--AMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTV------GF 84 (422)
T ss_pred CCeEEEEEECCeEEEEeCCCCCCcc--cccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhC------CC
Confidence 3555555 67889999999876322 111200 1112468999999999999999999987543 23
Q ss_pred eEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhC-CccEEEEEeccC-
Q psy16250 196 LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLG-LESMTTCLVRHC- 273 (485)
Q Consensus 196 L~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lG-l~~I~~~~v~H~- 273 (485)
+.||++..+...+..... .. .+... ..+.... .| +.+ .+| ..+|+++++.|.
T Consensus 85 ~~Vy~~~~t~~~l~~~~~---~~--~~~~~-~~~~~~~--------~~-----------~~~-~ig~~~~v~~~~~~H~~ 138 (422)
T TIGR00649 85 PPIYGTPLTIALIKSKIK---EN--KLNVR-TDLLEIH--------EG-----------EPI-ETGENHTIEFIRITHSI 138 (422)
T ss_pred CeEEeCHHHHHHHHHHHH---hc--CCCCC-CceEEeC--------CC-----------CEE-EeCCceEEEEEECCCCC
Confidence 579999998887764221 10 00000 0000000 01 012 343 248999999996
Q ss_pred CCccEEEEEEeCCcEEEEECCCCC--------ch---hHHHhh-cCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHH
Q psy16250 274 PNAFGVTMVTKSGHKITYSGDTMP--------CD---ALVSIG-KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGR 341 (485)
Q Consensus 274 ~~a~G~~i~~~~G~kIvYSGDT~p--------~~---~l~~~~-~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~ 341 (485)
++|+||+++. ++.+++||||++. +. .+.+.+ +++|+||+|+|+.+... .....|.+.+++.++++
T Consensus 139 p~s~g~~i~~-~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~--~~~~e~~~~~~i~~~~~ 215 (422)
T TIGR00649 139 PDSVGFALHT-PLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPG--FTPSEAKVLEQLNDIFK 215 (422)
T ss_pred cceEEEEEEe-CCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHH
Confidence 5799999985 5669999999964 12 233433 57999999999875211 11345777788888887
Q ss_pred HcCCCEEEEecCCCCCCChHH
Q psy16250 342 EMRAKFVLLTHFSQRYAKLPR 362 (485)
Q Consensus 342 ~~~ak~liLTHfS~ry~~~~~ 362 (485)
+++ .++++|||++...+.++
T Consensus 216 ~~~-~~viv~~fa~~~~R~~~ 235 (422)
T TIGR00649 216 NAK-GRVIVATFASNIHRVQQ 235 (422)
T ss_pred hCC-CEEEEEEccccHHHHHH
Confidence 776 56999999966544443
No 17
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.57 E-value=2.9e-14 Score=147.18 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=105.6
Q ss_pred cccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCc
Q psy16250 160 LLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGT 239 (485)
Q Consensus 160 ~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 239 (485)
.+.+|++|+|||.|.||+ +...+..... .....+.+++|.++..++..+.. .. .++..+..
T Consensus 106 ~i~~IDaVLiTH~H~DHl-D~~tl~~l~~--~~~~~~~~v~p~~~~~~~~~~Gv--p~--~rv~~v~~------------ 166 (355)
T PRK11709 106 AIREIDAVLATHDHSDHI-DVNVAAAVLQ--NCADHVKFIGPQACVDLWIGWGV--PK--ERCIVVKP------------ 166 (355)
T ss_pred HCCCCCEEEECCCccccc-ChHHHHHHHh--hcCCCcEEEEcHHHHHHHHhcCC--Cc--ceEEEecC------------
Confidence 467899999999999996 5544432211 11235778999998776655321 00 01111100
Q ss_pred ccCCCCCCCCCchhHHHHHhhCCccEEEEEeccC----------------------CCccEEEEEEeCCcEEEEECCCCC
Q psy16250 240 EQHGQNRPALDPDTVQILSSLGLESMTTCLVRHC----------------------PNAFGVTMVTKSGHKITYSGDTMP 297 (485)
Q Consensus 240 ~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~----------------------~~a~G~~i~~~~G~kIvYSGDT~p 297 (485)
| +.+ .+|..+|+++++.|. ..++||+|+. +|.+|+|+|||.+
T Consensus 167 ---G-----------e~i-~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~-~~~tvy~sGDT~~ 230 (355)
T PRK11709 167 ---G-----------DVV-KVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKT-PGGNIYHSGDSHY 230 (355)
T ss_pred ---C-----------CcE-EECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEe-CCeEEEEeCCCCc
Confidence 0 001 234457777777442 1368999995 7789999999999
Q ss_pred chhHHHhhc--CCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCC
Q psy16250 298 CDALVSIGK--NSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQ 355 (485)
Q Consensus 298 ~~~l~~~~~--~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ 355 (485)
++.+.++++ ++|+++....-.. .....|++++||+++++.++++++|++|+.-
T Consensus 231 ~~~~~~i~~~~~iDvall~iG~~p-----~~~~~hm~p~ea~~~a~~l~ak~vIpiH~dt 285 (355)
T PRK11709 231 SNYFAKHGNDHQIDVALGSYGENP-----RGITDKMTSIDILRMAESLNAKVVIPVHHDI 285 (355)
T ss_pred cHHHHHHHhcCCCCEEEecCCCCC-----CCCcCCCCHHHHHHHHHHcCCCEEEEEChhh
Confidence 998887765 6899888654211 1235699999999999999999999999964
No 18
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=136.55 Aligned_cols=193 Identities=19% Similarity=0.219 Sum_probs=113.4
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcC-c--cHH-HH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAP-R--QII-TW 207 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P-~--~~~-~~ 207 (485)
.....+|||+|.+...|..+ ++ ...+++||+||.|+||+.|++.|...... +++++.. . ... .+
T Consensus 38 ~~~~~~lid~g~~~~~~~~~-~~------~~~idai~~TH~H~DHi~Gl~~l~~~~~~-----~~~~~~~~~~~~~~~~~ 105 (269)
T COG1235 38 VGVKTLLIDAGPDLRDQGLR-LG------VSDLDAILLTHEHSDHIQGLDDLRRAYTL-----PIYVNPGTLRASTSDRL 105 (269)
T ss_pred ecceeEEEecChhHHhhhhc-cc------ccccCeEEEecccHHhhcChHHHHHHhcC-----Ccccccceecccchhhh
Confidence 44449999999999888766 33 36899999999999999999998764421 2222211 1 111 01
Q ss_pred HHHHHHHHHhhccccccccc---cccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEe
Q psy16250 208 LSVYAARFESVGHLYRLVPL---SLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTK 284 (485)
Q Consensus 208 L~~~~~~~~~l~~~~~~v~~---~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~ 284 (485)
...+...+............ ..+. ... .+ ..+.-.+..-...-...|...+.||.+++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~h-----------d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 167 (269)
T COG1235 106 LGGFPYLFRHPFPPFSLPAIGGLEVTP-FPV------PH-----------DAIEPVGFVIIRTGRKLHGGTDIGYGLEWR 167 (269)
T ss_pred hccchhhhcCCCCccccccccceeeec-CCC------CC-----------ccccCCCcccccCcccccccccceeeeeee
Confidence 11111111111000000000 0000 000 00 001011110111112334456778887753
Q ss_pred CCcEEEEECCCCCchh----HHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCCCCC
Q psy16250 285 SGHKITYSGDTMPCDA----LVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAK 359 (485)
Q Consensus 285 ~G~kIvYSGDT~p~~~----l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ry~~ 359 (485)
+..++|++||..-+. ........++++-++++.+. ....+|.++++|+++++..++++++|||+|+.++.
T Consensus 168 -~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~----gh~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~~ 241 (269)
T COG1235 168 -IGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDP----GHLSNHLSAEEALELIEKLKPKRLVLTHLSHKNDD 241 (269)
T ss_pred -eccEEEccccccCcchhHHHHhcCCccceeeeecccccc----CCCCCchhHHHHHHHHHhCCcceEEEEecCCCCCH
Confidence 458999999974322 23334567888999998764 24678999999999999999999999999999874
No 19
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.38 E-value=2e-12 Score=119.13 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=101.9
Q ss_pred eeeeee---cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCc
Q psy16250 126 LAIRGP---GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPR 202 (485)
Q Consensus 126 RNvS~~---~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~ 202 (485)
|+.+++ .++..+|||||.+...++.+.+. .....++++|||||.|.||++|++.+... ..+.||++.
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~---~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-------~~~~i~~~~ 73 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELK---KLGPKDIDAIILTHGHPDHIGGLPELLEA-------PGAPVYAPE 73 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHH---HcCchhhcEEEecccCcchhccHHHHHhC-------CCCcEEEch
Confidence 445555 67889999999776544322111 01167999999999999999999888753 245688999
Q ss_pred cHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEe-ccCCCccEEEE
Q psy16250 203 QIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLV-RHCPNAFGVTM 281 (485)
Q Consensus 203 ~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v-~H~~~a~G~~i 281 (485)
....+++.+... . ..+......... ......| +.+ .++...++.+++ .|+..++++.+
T Consensus 74 ~~~~~~~~~~~~--~------~~~~~~~~~~~~-~~~~~~~-----------~~~-~~~~~~~~~~~~~~h~~~~~~~~~ 132 (183)
T smart00849 74 GTAELLKDLLKL--G------GALGAEAPPPPP-DRTLKDG-----------EEL-DLGGLELEVIHTPGHTPGSIVLYL 132 (183)
T ss_pred hhhHHHhccchh--c------cccCcCCCCCcc-ceecCCC-----------CEE-EeCCceEEEEECCCCCCCcEEEEE
Confidence 888877653221 0 000000000000 0000000 001 223236666655 67778888777
Q ss_pred EEeCCcEEEEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEec
Q psy16250 282 VTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTH 352 (485)
Q Consensus 282 ~~~~G~kIvYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTH 352 (485)
. +.+++|+||+...... ..+..++ ....+....+++..+.+...+.++.+|
T Consensus 133 ~---~~~vl~~gD~~~~~~~-------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 133 P---EGKILFTGDLLFSGGI-------GRTDDDG----------GDASASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred C---CCCEEEECCeeeccCC-------CCcccCC----------CCccHHHHHHHHHHhhcCCccEeecCC
Confidence 5 4799999999876654 1111111 123344556777777777777777666
No 20
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.36 E-value=3.6e-12 Score=140.57 Aligned_cols=169 Identities=21% Similarity=0.181 Sum_probs=96.0
Q ss_pred cCCceEEEeCCCCHHHHHHHHhC-C-cccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYG-S-AVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLS 209 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G-~-~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~ 209 (485)
.++..||||||-....+....+. . .....+.+|++|||||.|.||++|++.+.... . ...||++..+.+.+.
T Consensus 195 ~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g----~--~gpIY~T~pT~~l~~ 268 (630)
T TIGR03675 195 TPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYG----Y--DGPVYCTPPTRDLMT 268 (630)
T ss_pred ECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhC----C--CCceeecHHHHHHHH
Confidence 67889999999765321111122 0 11123678999999999999999999887431 1 235888887766543
Q ss_pred HHHHHHHhhccccccccccccccCCC----cc-CcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEe
Q psy16250 210 VYAARFESVGHLYRLVPLSLFNTKGL----IE-GTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTK 284 (485)
Q Consensus 210 ~~~~~~~~l~~~~~~v~~~l~~~~~~----~~-~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~ 284 (485)
.....+..+.......+ .+..... .. ....+|. .+...+..+++++++.|+.++..+.+...
T Consensus 269 ~ll~D~~~i~~~~g~~~--~y~~~dv~~~~~~~~~l~yg~-----------~~~i~~~i~vt~~~AGHilGsa~~~~~i~ 335 (630)
T TIGR03675 269 LLQLDYIDVAQREGKKP--PYSSKDVREALKHTITLDYGE-----------VTDIAPDIKLTFYNAGHILGSAIAHLHIG 335 (630)
T ss_pred HHHHHHHHHHHhcCCCC--CCCHHHHHHHHhccEEeCCCC-----------eEEecCCEEEEEecCccccCceEEEEEEC
Confidence 21110001100000000 0000000 00 0000110 01111234899999999999888887754
Q ss_pred CC-cEEEEECCCCCchh-HH----HhhcCCChhhhccCCCc
Q psy16250 285 SG-HKITYSGDTMPCDA-LV----SIGKNSDLLIHEATHED 319 (485)
Q Consensus 285 ~G-~kIvYSGDT~p~~~-l~----~~~~~aDLLIhEATf~d 319 (485)
+| .+|+||||+.+... +. ....++|+||+|+||.+
T Consensus 336 dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~ 376 (630)
T TIGR03675 336 DGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGG 376 (630)
T ss_pred CCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCC
Confidence 44 69999999977532 11 12357999999999986
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.29 E-value=1.3e-11 Score=133.18 Aligned_cols=194 Identities=20% Similarity=0.221 Sum_probs=122.4
Q ss_pred eeeeeee-cCCceEEEeCCCCHHHHHHHHhCCc--------ccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCce
Q psy16250 125 VLAIRGP-GPDTCILLDCGEGTYSQLVRLYGSA--------VDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECK 195 (485)
Q Consensus 125 ~RNvS~~-~~~~~ILlDcGegt~~qL~r~~G~~--------~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~p 195 (485)
-+|+... .++..++||||--+... ...|.+ ......++++|||||.|.||++|++.++... ..
T Consensus 21 GkN~~vve~~~~i~i~D~G~~fp~~--~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~------~~ 92 (555)
T COG0595 21 GKNMYVVEYGDDIIILDAGLKFPED--DLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQV------LF 92 (555)
T ss_pred ccceEEEEECCcEEEEECccccCcc--ccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcC------Cc
Confidence 4777777 78899999999765432 224421 1233468999999999999999999998643 22
Q ss_pred eEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCC-
Q psy16250 196 LTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCP- 274 (485)
Q Consensus 196 L~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~- 274 (485)
++||+++-+...++.-... ....... . .+..-.. + ..+ .+|-..|++++|.|+.
T Consensus 93 ~piy~s~lt~~Li~~k~~~-~~~~~~~--~--~~~ev~~--------~-----------~~i-~~~~~~v~f~~vtHSIP 147 (555)
T COG0595 93 APIYASPLTAALIKEKLKE-HGLFKNE--N--ELHEVKP--------G-----------SEI-KFGSFEVEFFPVTHSIP 147 (555)
T ss_pred CceecCHhhHHHHHHHHHH-hcccccc--C--ceEEeCC--------C-----------CeE-EeCcEEEEEEeecccCc
Confidence 7899999888887653220 1110000 0 1111000 0 001 2366699999999986
Q ss_pred CccEEEEEEeCCcEEEEECCCCCc-----------hhHHHhhc-CCChhhhccCCCchHHHHHhcCCCCcHHH-----HH
Q psy16250 275 NAFGVTMVTKSGHKITYSGDTMPC-----------DALVSIGK-NSDLLIHEATHEDELEKEAALKMHSTVSQ-----AI 337 (485)
Q Consensus 275 ~a~G~~i~~~~G~kIvYSGDT~p~-----------~~l~~~~~-~aDLLIhEATf~d~~~e~A~~k~HsT~~e-----Ai 337 (485)
.|+|+++.++.| .|+|+||-+.. ..+.++++ |+++||+|+|-.. ..+.++.+. +-
T Consensus 148 ds~g~~i~Tp~G-~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~-------~pg~t~SE~~v~~~l~ 219 (555)
T COG0595 148 DSLGIVIKTPEG-NIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAE-------NPGFTPSESEVGENLE 219 (555)
T ss_pred cceEEEEECCCc-cEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccC-------CCCCCCCHHHHHHHHH
Confidence 699999998777 89999996421 14556665 6999999999653 222322211 22
Q ss_pred HHHHHcCCCEEEEecCCCCCCCh
Q psy16250 338 RIGREMRAKFVLLTHFSQRYAKL 360 (485)
Q Consensus 338 ~va~~~~ak~liLTHfS~ry~~~ 360 (485)
++.+.+ -.++++|=|+.....+
T Consensus 220 ~i~~~a-~grVIv~tfaSni~Ri 241 (555)
T COG0595 220 DIIRNA-KGRVIVTTFASNIERI 241 (555)
T ss_pred HHHHhC-CCcEEEEEchhhHHHH
Confidence 333333 2467777777654443
No 22
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.1e-10 Score=123.76 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=98.1
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.++..||+|||.-...+. ..+... .....+|+++|||+|.||++|++.+....+ .-.||+.+.+....+..
T Consensus 21 ~~~~~il~D~G~~~~~~~-~~~p~~--~~~~~vDavllTHaHlDH~g~lp~l~~~~~------~~~v~aT~~T~~l~~~~ 91 (427)
T COG1236 21 TGGTRILLDCGLFPGDPS-PERPLL--PPFPKVDAVLLTHAHLDHIGALPYLVRNGF------EGPVYATPPTAALLKVL 91 (427)
T ss_pred ECCceEEEECCCCcCcCC-ccCCCC--CCCCCcCEEEeccCchhhhcccHHHHHhcc------CCceeeccCHHHHHHHH
Confidence 667899999997653332 112211 012268999999999999999999887542 14688998887766542
Q ss_pred HHHHHhhccccccccccccccCCCc----c-CcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCC
Q psy16250 212 AARFESVGHLYRLVPLSLFNTKGLI----E-GTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSG 286 (485)
Q Consensus 212 ~~~~~~l~~~~~~v~~~l~~~~~~~----~-~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G 286 (485)
..-.-.+... .. .+ .+...++. . .+..+|. .+...| .+|+++++.|..++.+|.++. ++
T Consensus 92 l~d~~~~~~~-~~-~~-~~~~~d~~~~~~~~~~~~yg~-----------~~~v~~-~~v~~~~AGHilGsa~~~le~-~~ 155 (427)
T COG1236 92 LGDSLKLAEG-PD-KP-PYSEEDVERVPDLIRPLPYGE-----------PVEVGG-VKVTFYNAGHILGSAAILLEV-DG 155 (427)
T ss_pred HHHHHhhhcC-CC-CC-CCchhHHHhhHhhEEEecCCC-----------ceEeee-EEEEEecCCCccceeEEEEEe-CC
Confidence 2111111100 00 00 00000000 0 0011221 122224 599999999999999999995 56
Q ss_pred cEEEEECCCCCch-hHH---HhhcCCChhhhccCCCch
Q psy16250 287 HKITYSGDTMPCD-ALV---SIGKNSDLLIHEATHEDE 320 (485)
Q Consensus 287 ~kIvYSGDT~p~~-~l~---~~~~~aDLLIhEATf~d~ 320 (485)
.+|+||||....+ .+. +....+|+||.|+||.+.
T Consensus 156 ~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~~ 193 (427)
T COG1236 156 GRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGDR 193 (427)
T ss_pred ceEEEEeccCCCcCCCCCccccCCCCcEEEEecccCCc
Confidence 6899999986422 121 122236999999999863
No 23
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.00 E-value=1.2e-09 Score=100.10 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=96.8
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.+++.+|||||.+......... ........+|++|++||.|+||++|+..+..... ...++++..........
T Consensus 13 ~~~~~iliD~G~~~~~~~~~~~-~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~------~~~~~~~~~~~~~~~~~ 85 (194)
T PF00753_consen 13 GGDGAILIDTGLDPDFAKELEL-ALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP------VVIIYSSADAAKAIRPP 85 (194)
T ss_dssp ETTEEEEESEBSSHHHHHHHHH-HHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT------EEEEEEHHHHHHHHHHH
T ss_pred ECCEEEEEeCCCCchhhHHhhh-hHhhccCCCeEEEEECcccccccccccccccccc------eeeeecccccccccccc
Confidence 7899999999999866544210 0012457899999999999999999999887542 33444444433322221
Q ss_pred HHHH-HhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCCcEEE
Q psy16250 212 AARF-ESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKIT 290 (485)
Q Consensus 212 ~~~~-~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G~kIv 290 (485)
.... ....... ........... .. ..+......+...|+..+.++.+.. .+.+++
T Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~~~---------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl 141 (194)
T PF00753_consen 86 DRDSASRRGPAV-PPPPIIDEDED---------------------DL-EIGGDRILFIIPGPGHGSDSLIIYL-PGGKVL 141 (194)
T ss_dssp HHHHHHHHHHHH-ESEEEEEETTT---------------------EE-EEETTEEEEEEESSSSSTTEEEEEE-TTTTEE
T ss_pred cccccccccccc-ccccceeeecc---------------------cc-cccccccccceeccccCCcceEEEe-CCCcEE
Confidence 1100 0000000 00000000000 00 1122244556667777777777774 677999
Q ss_pred EECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEec
Q psy16250 291 YSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTH 352 (485)
Q Consensus 291 YSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTH 352 (485)
|+||+........... + ..... ........+....++++......++.++..|
T Consensus 142 ftGD~~~~~~~~~~~~--~----~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 142 FTGDLLFSNEHPNPDP--D----LPLRG---ADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp EEETTSCTTTSSSSST--S----HTTTT---HTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred EeeeEeccCCcccccc--c----ccccc---ccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 9999977543221111 1 00000 0000111233455666777788899999887
No 24
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=98.92 E-value=8.1e-09 Score=107.65 Aligned_cols=225 Identities=20% Similarity=0.159 Sum_probs=116.9
Q ss_pred cCCceEEEeCCCCHHHHHHHHhC-Ccc-cccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHH-
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYG-SAV-DTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWL- 208 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G-~~~-~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L- 208 (485)
+.+..+|||||-+..+.=...|. ..+ ......|+||+|||.|.||++=+|.|....+ . -+|||++.+.+.+
T Consensus 201 T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy----~--GPVY~T~PTRDlm~ 274 (637)
T COG1782 201 TPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGY----D--GPVYCTPPTRDLMV 274 (637)
T ss_pred cCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCC----C--CCeeeCCCcHHHHH
Confidence 78899999999876432011122 111 1223479999999999999877777665432 2 2677887776543
Q ss_pred ---HHHHHHHHhhccccccccccccccCCCcc-CcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEE-
Q psy16250 209 ---SVYAARFESVGHLYRLVPLSLFNTKGLIE-GTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVT- 283 (485)
Q Consensus 209 ---~~~~~~~~~l~~~~~~v~~~l~~~~~~~~-~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~- 283 (485)
..|....+.-+....+-+.++-. .+.| -+..+|. +....-..++++.-+.|..+|--.-+..
T Consensus 275 LLq~Dyi~va~keg~~ppY~~k~v~~--~lkhtItldYge-----------vTDIaPDirLTf~NAGHILGSA~~HlHIG 341 (637)
T COG1782 275 LLQLDYIEVAEKEGGEPPYESKDVRK--VLKHTITLDYGE-----------VTDIAPDIRLTFYNAGHILGSAMAHLHIG 341 (637)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHH--HHheeeeeccCc-----------ccccCCccEEEEecccchhcceeeEEEec
Confidence 22332222211111111100000 0000 0111221 0111122378889999988765554443
Q ss_pred eCCcEEEEECCCCCchh-HH----HhhcCCChhhhccCCCchHHHHHhcCCCCcHHHH----HHHHHHc---CCCEEEEe
Q psy16250 284 KSGHKITYSGDTMPCDA-LV----SIGKNSDLLIHEATHEDELEKEAALKMHSTVSQA----IRIGREM---RAKFVLLT 351 (485)
Q Consensus 284 ~~G~kIvYSGDT~p~~~-l~----~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eA----i~va~~~---~ak~liLT 351 (485)
.+...|+|+||..+... +. .-...++-||.|+||... ...+.+-.|| +++..+. |- ++++-
T Consensus 342 dGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~------~d~q~~R~eaE~~L~~vi~~t~~rGG-KvLIP 414 (637)
T COG1782 342 DGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGR------DDVQPPREEAEKELIKVINDTLKRGG-KVLIP 414 (637)
T ss_pred CCceeEEEecccccceeeecChhhccCcchhheeeeeccCCc------cccCccHHHHHHHHHHHHHHHHhcCC-eEEEE
Confidence 44579999999876431 21 122468999999999832 1223333333 3333322 43 44444
Q ss_pred cCCC-CCCChH-HH----hhhcCcceeeeccCcEeec
Q psy16250 352 HFSQ-RYAKLP-RL----NKDLSENVGIAFDNMRFPE 382 (485)
Q Consensus 352 HfS~-ry~~~~-~l----~~~~~~~v~iA~Dgm~i~l 382 (485)
-|+- |-..+- .| ....-..+-+--|||..+.
T Consensus 415 ~fAVGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~Ea 451 (637)
T COG1782 415 VFAVGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWEA 451 (637)
T ss_pred eeeccccceehhHHHHHHhcCCCCCCceeeeeeeeeh
Confidence 4543 433221 12 2223345777889999764
No 25
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.90 E-value=5.3e-09 Score=106.86 Aligned_cols=188 Identities=18% Similarity=0.169 Sum_probs=107.9
Q ss_pred cCcCEEEeecCchhhhcChHHHHHHHhccCC-CceeEEEcCccHHHHHHHHHHHHHh-hcccc---ccccc-cccccCCC
Q psy16250 162 SQLSAVYISHLHADHHLGLFSVIKAWSRVKP-ECKLTLLAPRQIITWLSVYAARFES-VGHLY---RLVPL-SLFNTKGL 235 (485)
Q Consensus 162 ~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~-~~pL~V~~P~~~~~~L~~~~~~~~~-l~~~~---~~v~~-~l~~~~~~ 235 (485)
..|.++||||.|.||+.||. +..-..... ..+-.|||-+.+.+.|+... |.. ++..+ ...+. ........
T Consensus 78 ~~I~~ylItH~HLDHi~gLv--insp~~~~~~~~~K~i~gl~~ti~alk~hi--FN~~iWPNl~~~~~~~~~~~~~~~~l 153 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLV--INSPEDYLPNSSPKTIYGLPSTIEALKNHI--FNDIIWPNLSDEGEGDYLYKYRYFDL 153 (335)
T ss_pred HhhheEEecCCchhhHHHHH--hcCcccccccCCCCcEEECHHHHHHHHHcc--cCCccCCCCCCcCcccceeeeeeeec
Confidence 57999999999999999983 332211111 25678999999999887531 221 11100 00000 00000000
Q ss_pred ccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCC------ccEEEEEEe-CCcEEEEECCCCCc--------hh
Q psy16250 236 IEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPN------AFGVTMVTK-SGHKITYSGDTMPC--------DA 300 (485)
Q Consensus 236 ~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~------a~G~~i~~~-~G~kIvYSGDT~p~--------~~ 300 (485)
.+... .......+...... + ..+ ..++++++.|... +.+|.|+.. .|..|+|.|||.|. ..
T Consensus 154 ~~~~~-~~~~~~~~s~~~~~-~-~~~-~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~ 229 (335)
T PF02112_consen 154 SPGEL-IPLNNTTLSVIPNE-F-PNS-SSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQK 229 (335)
T ss_pred cccce-eecccccccccccc-c-ccc-ccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHH
Confidence 00000 00000000000000 0 012 3688899999864 689999863 36899999999873 33
Q ss_pred HHHhh------cCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHc----C-------CCEEEEecCCCCCC
Q psy16250 301 LVSIG------KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREM----R-------AKFVLLTHFSQRYA 358 (485)
Q Consensus 301 l~~~~------~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~----~-------ak~liLTHfS~ry~ 358 (485)
+++.+ +...-++.||+|.++..+ +...||+|+.-.++..+.+ + -=+||+||.-+...
T Consensus 230 iW~~~ap~I~~~~LkaI~IEcS~~~~~~d-~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~ 303 (335)
T PF02112_consen 230 IWRYAAPKIASGKLKAIFIECSYPNSQPD-SQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLN 303 (335)
T ss_pred HHHHHHhhccccccCEEEEEeCCCCCCCc-hHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCccc
Confidence 44433 256788999999987644 5688999997766554433 1 11699999987654
No 26
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.88 E-value=1.4e-08 Score=93.43 Aligned_cols=81 Identities=20% Similarity=0.187 Sum_probs=55.7
Q ss_pred CCccEEEEEeccC-------CCccEEEEEEeCCcEEEEECCCCCc--hhHHHhhcCCChhhhccCCCchHHHHHhcCCCC
Q psy16250 261 GLESMTTCLVRHC-------PNAFGVTMVTKSGHKITYSGDTMPC--DALVSIGKNSDLLIHEATHEDELEKEAALKMHS 331 (485)
Q Consensus 261 Gl~~I~~~~v~H~-------~~a~G~~i~~~~G~kIvYSGDT~p~--~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~Hs 331 (485)
|...|+.++..|. ....||.++. +|.+|++.|||... .........+|+++.-+.- ...+
T Consensus 74 ~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~-~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g----------~~~~ 142 (163)
T PF13483_consen 74 GGFKITAVPAYHDGPGGHPRGENVGYLIEV-GGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG----------PFTM 142 (163)
T ss_dssp TTEEEEEEEEEE-STGTS-TTCCEEEEEEE-TTEEEEE-TT--S---HHHHHHH-S-SEEEEE--T----------TTS-
T ss_pred eeeEEEEEeeeccccCCCCcCCeEEEEEEe-CCCEEEEECCCccCCCHHHHhcccCCCEEEecCCC----------Cccc
Confidence 3448888888874 3578999995 89999999999863 2333444689999988763 4578
Q ss_pred cHHHHHHHHHHcCCCEEEEec
Q psy16250 332 TVSQAIRIGREMRAKFVLLTH 352 (485)
Q Consensus 332 T~~eAi~va~~~~ak~liLTH 352 (485)
+..+|+++++++++|.+|.+|
T Consensus 143 ~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 143 GPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp -HHHHHHHHHHCT-SEEEEES
T ss_pred CHHHHHHHHHHcCCCEEEeCC
Confidence 999999999999999999998
No 27
>KOG1136|consensus
Probab=98.84 E-value=3.8e-09 Score=105.02 Aligned_cols=174 Identities=17% Similarity=0.066 Sum_probs=98.7
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCC-----cccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccH-H
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGS-----AVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQI-I 205 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~-----~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~-~ 205 (485)
.++.+|++|||--..-+-.|+|.. .....-.-|++|+|||+|.||++.||.+-... +.+.|++.--|... .
T Consensus 24 i~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~---GY~GPIYMt~PTkaic 100 (501)
T KOG1136|consen 24 IGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVV---GYDGPIYMTYPTKAIC 100 (501)
T ss_pred ECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhh---CCCCceEEecchhhhc
Confidence 789999999996543333333441 11122346999999999999999999887654 45567776666433 2
Q ss_pred H-HHHHHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEe
Q psy16250 206 T-WLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTK 284 (485)
Q Consensus 206 ~-~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~ 284 (485)
. .|+.|....-+..++-++...+-+......... -.+ .+.+.......|++..+.|..++.-|.+. -
T Consensus 101 PvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~----------i~l-~qt~~vD~dl~IrayYAGHVLGAaMf~ik-v 168 (501)
T KOG1136|consen 101 PVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVA----------IDL-HQTIQVDEDLQIRAYYAGHVLGAAMFYIK-V 168 (501)
T ss_pred hHHHHHHHHHhccccCcccceeHHHHHHHHhheeE----------eee-hheEEecccceeeeeecccccceeEEEEE-e
Confidence 2 234554432221111111111000000000000 000 01111122348999999999998888887 4
Q ss_pred CCcEEEEECCCCCch--hHH-Hhh--cCCChhhhccCCCch
Q psy16250 285 SGHKITYSGDTMPCD--ALV-SIG--KNSDLLIHEATHEDE 320 (485)
Q Consensus 285 ~G~kIvYSGDT~p~~--~l~-~~~--~~aDLLIhEATf~d~ 320 (485)
+..+++|+||-...+ .+- ... -..||||.|+||...
T Consensus 169 Gd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYatt 209 (501)
T KOG1136|consen 169 GDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATT 209 (501)
T ss_pred cceeEEEecCccCCcccccchhhhccccCceEEeeccceee
Confidence 678999999964332 221 111 257999999999653
No 28
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=98.73 E-value=3.2e-08 Score=97.72 Aligned_cols=109 Identities=20% Similarity=0.330 Sum_probs=69.5
Q ss_pred CceEEEeCCCCH--HHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 134 DTCILLDCGEGT--YSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 134 ~~~ILlDcGegt--~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
+..+|||+|.+. ...|.+ .| .++++|++||.|+||++|+..+.... ++.||++...
T Consensus 20 ~~~ilID~g~~~~i~~~l~~-~g-------~~l~~Il~TH~H~DHigG~~~l~~~~-------~~~V~~~~~~------- 77 (248)
T TIGR03413 20 GQAAVVDPGEAEPVLDALEA-RG-------LTLTAILLTHHHHDHVGGVAELLEAF-------PAPVYGPAEE------- 77 (248)
T ss_pred CCEEEEcCCChHHHHHHHHH-cC-------CeeeEEEeCCCCccccCCHHHHHHHC-------CCeEEecccc-------
Confidence 579999999763 223322 23 25899999999999999998886542 2678888653
Q ss_pred HHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEec-cCCCccEEEEEEeCCcEEE
Q psy16250 212 AARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVR-HCPNAFGVTMVTKSGHKIT 290 (485)
Q Consensus 212 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~-H~~~a~G~~i~~~~G~kIv 290 (485)
.+.. .. ..+.. | +.+ .+|...++.+.+. |+.++++|.+. +.+++
T Consensus 78 -----~~~~----~~-~~v~~----------g-----------~~~-~~g~~~i~v~~tpGHT~g~i~~~~~---~~~~l 122 (248)
T TIGR03413 78 -----RIPG----IT-HPVKD----------G-----------DTV-TLGGLEFEVLAVPGHTLGHIAYYLP---DSPAL 122 (248)
T ss_pred -----cCCC----Cc-EEeCC----------C-----------CEE-EECCEEEEEEECCCCCcccEEEEEC---CCCEE
Confidence 0000 00 00100 0 001 2343477777765 88899999886 34799
Q ss_pred EECCCCCch
Q psy16250 291 YSGDTMPCD 299 (485)
Q Consensus 291 YSGDT~p~~ 299 (485)
|+|||....
T Consensus 123 ftGDtl~~~ 131 (248)
T TIGR03413 123 FCGDTLFSA 131 (248)
T ss_pred EEcCccccC
Confidence 999997543
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.71 E-value=5.9e-08 Score=102.13 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=74.6
Q ss_pred cCCceEEEeCCCCH-HHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHH
Q psy16250 132 GPDTCILLDCGEGT-YSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSV 210 (485)
Q Consensus 132 ~~~~~ILlDcGegt-~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~ 210 (485)
.++..+|||||.+. ..++...... ...+.+|++|++||.|.||++|++.++... +...||+++.....+..
T Consensus 39 ~~~~~vLIDtg~~~~~~~~~~~l~~--~~~~~~Id~IilTH~H~DHiggl~~l~~~~------p~a~V~~~~~~~~~l~~ 110 (394)
T PRK11921 39 KDEKTVLIDTVWQPFAKEFVENLKK--EIDLDKIDYIVANHGEIDHSGALPELMKEI------PDTPIYCTKNGAKSLKG 110 (394)
T ss_pred eCCCEEEEeCCCCCcHHHHHHHHHh--hcCcccCCEEEeCCCCCchhhHHHHHHHHC------CCCEEEECHHHHHHHHH
Confidence 45678999999643 2233322110 123568999999999999999999887542 24678898877666543
Q ss_pred HHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEe--ccCCCccEEEEEEeCCcE
Q psy16250 211 YAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLV--RHCPNAFGVTMVTKSGHK 288 (485)
Q Consensus 211 ~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v--~H~~~a~G~~i~~~~G~k 288 (485)
.. ...+.. ..+.. | +.+ .+|..+++++.+ .|++.++.+.+. +.+
T Consensus 111 ~~------~~~~~~---~~v~~----------g-----------~~l-~lG~~~l~~i~tP~~H~p~~~~~y~~---~~~ 156 (394)
T PRK11921 111 HY------HQDWNF---VVVKT----------G-----------DRL-EIGSNELIFIEAPMLHWPDSMFTYLT---GDN 156 (394)
T ss_pred Hh------CCCCce---EEeCC----------C-----------CEE-eeCCeEEEEEeCCCCCCCCceEEEEc---CCC
Confidence 11 001110 00110 0 012 345557777754 488887776664 457
Q ss_pred EEEECCC
Q psy16250 289 ITYSGDT 295 (485)
Q Consensus 289 IvYSGDT 295 (485)
++||||+
T Consensus 157 vLFsgD~ 163 (394)
T PRK11921 157 ILFSNDA 163 (394)
T ss_pred EEEecCc
Confidence 9999997
No 30
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.59 E-value=4.4e-07 Score=89.92 Aligned_cols=178 Identities=19% Similarity=0.143 Sum_probs=106.4
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.++.+||+|..-+....-.-..|......+..+++|+|||.|.||. +...++..+. ++...++.|......+..+
T Consensus 21 ~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl-~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~ 95 (258)
T COG2220 21 TGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHL-DDETLIALRT----NKAPVVVVPLGAGDLLIRD 95 (258)
T ss_pred ECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCcccc-CHHHHHHHhc----CCCcEEEeHHHHHHHHHhc
Confidence 6778999998754211100000001123466899999999999995 5555554331 2234566777764333232
Q ss_pred HHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCC-------------CccE
Q psy16250 212 AARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCP-------------NAFG 278 (485)
Q Consensus 212 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~-------------~a~G 278 (485)
....+.+ ....+- . .. .++..++.++++.|.. ...|
T Consensus 96 g~~~~~~------~~~~~~--~----------------------~~-~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~ 144 (258)
T COG2220 96 GVEAERV------HELGWG--D----------------------VI-ELGDLEITAVPAYHVSARHLPGRGIRPTGLWVG 144 (258)
T ss_pred CCCcceE------EeecCC--c----------------------eE-EecCcEEEEEEeecccccccCCCCccccCCceE
Confidence 1100000 000000 0 01 1222355555555542 3678
Q ss_pred EEEEEeCCcEEEEECCCCCchhHHHhhcC--CChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCC
Q psy16250 279 VTMVTKSGHKITYSGDTMPCDALVSIGKN--SDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFS 354 (485)
Q Consensus 279 ~~i~~~~G~kIvYSGDT~p~~~l~~~~~~--aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS 354 (485)
|+|+ ..|.+++++|||.. .......+. +|+++.+..-.+ ...|++..+|..+++.++++.++.+|+.
T Consensus 145 ~vi~-~~g~~iyh~GDt~~-~~~~~~~~~~~~DvallPig~~~-------~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 145 YVIE-TPGGRVYHAGDTGY-LFLIIEELDGPVDVALLPIGGYP-------NATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred EEEE-eCCceEEeccCccH-HHHhhhhhcCCccEEEeccCCCC-------CCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 9999 47889999999988 333333332 699888876322 4678999999999999999999999998
No 31
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.49 E-value=2.6e-07 Score=90.12 Aligned_cols=70 Identities=27% Similarity=0.338 Sum_probs=53.1
Q ss_pred eeee--cCCceEEEeCCCCH--HHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCcc
Q psy16250 128 IRGP--GPDTCILLDCGEGT--YSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQ 203 (485)
Q Consensus 128 vS~~--~~~~~ILlDcGegt--~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~ 203 (485)
.|+. .++..||||+|... +-.=++.+| ..+++|++|+|||.|+||++||+.++.. ....+.||++++
T Consensus 23 fS~LVE~~~~riLFDtG~~~~~ll~Na~~lg----vd~~did~vvlSHgH~DH~GGL~~~~~~-----~~~~i~v~ahp~ 93 (259)
T COG1237 23 FSALVEDEGTRILFDTGTDSDVLLHNARLLG----VDLRDIDAVVLSHGHYDHTGGLPYLLEE-----NNPGIPVYAHPD 93 (259)
T ss_pred eEEEEEcCCeEEEEeCCCCcHHHHHHHHHcC----CCcccCcEEEEeCCCccccCchHhHHhc-----cCCCceEEeChH
Confidence 5555 66788999999543 222233366 6688999999999999999999988764 346788999988
Q ss_pred HHH
Q psy16250 204 IIT 206 (485)
Q Consensus 204 ~~~ 206 (485)
...
T Consensus 94 af~ 96 (259)
T COG1237 94 AFK 96 (259)
T ss_pred HHh
Confidence 765
No 32
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=98.48 E-value=1.3e-06 Score=86.40 Aligned_cols=58 Identities=21% Similarity=0.508 Sum_probs=41.3
Q ss_pred cCCceEEEeCCCCH--HHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCcc
Q psy16250 132 GPDTCILLDCGEGT--YSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQ 203 (485)
Q Consensus 132 ~~~~~ILlDcGegt--~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~ 203 (485)
.++..+|||+|.+- ...|.+ .| .++++|++||.|+||++|+..+.... ....||++..
T Consensus 20 ~~~~~ilIDpg~~~~vl~~l~~-~g-------~~l~~IllTH~H~DHigG~~~l~~~~------~~~~V~~~~~ 79 (251)
T PRK10241 20 EAGRCLIVDPGEAEPVLNAIAE-NN-------WQPEAIFLTHHHHDHVGGVKELVEKF------PQIVVYGPQE 79 (251)
T ss_pred CCCcEEEECCCChHHHHHHHHH-cC-------CccCEEEeCCCCchhhccHHHHHHHC------CCCEEEeccc
Confidence 34678999999863 223332 23 25789999999999999999887643 2357888754
No 33
>KOG1361|consensus
Probab=98.40 E-value=3.4e-07 Score=96.58 Aligned_cols=120 Identities=22% Similarity=0.235 Sum_probs=82.9
Q ss_pred cCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCccc
Q psy16250 162 SQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQ 241 (485)
Q Consensus 162 ~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 241 (485)
.+..+-|+||+|+||..||..-+. . | .+||..-+...+......-.. ....++ +.
T Consensus 111 ~~~s~yFLsHFHSDHy~GL~~sW~-------~-p-~lYCS~ita~Lv~~~~~v~~~---~i~~l~--l~----------- 165 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGLTKSWS-------H-P-PLYCSPITARLVPLKVSVTKQ---SIQALD--LN----------- 165 (481)
T ss_pred cccceeeeeccccccccccccccc-------C-C-cccccccchhhhhhhcccChh---hceeec--CC-----------
Confidence 467899999999999999843321 1 1 288888777766542111000 011111 00
Q ss_pred CCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCCcEEEEECCCCCchhHHH--h--h-cCCChhhhccC
Q psy16250 242 HGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVS--I--G-KNSDLLIHEAT 316 (485)
Q Consensus 242 ~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G~kIvYSGDT~p~~~l~~--~--~-~~aDLLIhEAT 316 (485)
+.+...| ..++.++++||++++-+.++...|..++++||-|.++.+.. + . ...|.+..|+|
T Consensus 166 -------------~~~~i~~-~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtT 231 (481)
T KOG1361|consen 166 -------------QPLEIPG-IQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTT 231 (481)
T ss_pred -------------Cceeecc-eEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeec
Confidence 0122334 48999999999999999999888889999999999887655 2 2 57999999999
Q ss_pred CCch
Q psy16250 317 HEDE 320 (485)
Q Consensus 317 f~d~ 320 (485)
+.+.
T Consensus 232 ycnp 235 (481)
T KOG1361|consen 232 YCNP 235 (481)
T ss_pred ccCC
Confidence 8764
No 34
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.37 E-value=1.4e-06 Score=93.84 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=73.6
Q ss_pred cCCceEEEeCCCC-HHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHH
Q psy16250 132 GPDTCILLDCGEG-TYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSV 210 (485)
Q Consensus 132 ~~~~~ILlDcGeg-t~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~ 210 (485)
.++..+|||+|.. ...++...... ...+.+|++|++||.|.||++|++.|+... +...||++......+..
T Consensus 41 ~~~~~vLIDtg~~~~~~~~l~~l~~--~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~------p~a~V~~s~~~~~~l~~ 112 (479)
T PRK05452 41 REEKNVLIDTVDHKFSREFVQNLRN--EIDLADIDYIVINHAEEDHAGALTELMAQI------PDTPIYCTANAIDSING 112 (479)
T ss_pred ECCCEEEEeCCCcccHHHHHHHHHh--cCCHhhCCEEEeCCCCcchhchHHHHHHHC------CCCEEEECHHHHHHHHH
Confidence 4567899999964 23333332210 122568999999999999999999887532 24678888877766543
Q ss_pred HHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhC-CccEEEEEe--ccCCCccEEEEEEeCCc
Q psy16250 211 YAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLG-LESMTTCLV--RHCPNAFGVTMVTKSGH 287 (485)
Q Consensus 211 ~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lG-l~~I~~~~v--~H~~~a~G~~i~~~~G~ 287 (485)
... . ..+.+ ..+.. | +.+ .+| ...++.+.+ .|++.+..+.+. +.
T Consensus 113 ~~~----~-~~~~~---~~v~~----------G-----------~~l-~lG~~~~l~~i~tP~~H~pgs~~~y~~---~~ 159 (479)
T PRK05452 113 HHH----H-PEWNF---NVVKT----------G-----------DTL-DIGNGKQLIFVETPMLHWPDSMMTYLT---GD 159 (479)
T ss_pred hhc----C-CcCeE---EEeCC----------C-----------CEE-ecCCCcEEEEEECCCCCCCCceEEEEc---CC
Confidence 110 0 00000 01110 1 001 234 235666655 488888777764 45
Q ss_pred EEEEECCC
Q psy16250 288 KITYSGDT 295 (485)
Q Consensus 288 kIvYSGDT 295 (485)
+++||||.
T Consensus 160 ~vLFsgD~ 167 (479)
T PRK05452 160 AVLFSNDA 167 (479)
T ss_pred CEEEeccc
Confidence 89999995
No 35
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.30 E-value=1.6e-06 Score=83.33 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=42.9
Q ss_pred CceEEEeCCCCHH--HHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHH
Q psy16250 134 DTCILLDCGEGTY--SQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWL 208 (485)
Q Consensus 134 ~~~ILlDcGegt~--~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L 208 (485)
+..+|||||.+.. ..+.+... ..-.+|++|++||.|.||++|+..+..... ...++.+.....+.
T Consensus 35 ~~~~liD~G~~~~~~~~~~~~l~----~~~~~i~~vilTH~H~DH~gg~~~~~~~~~------~~~~~~~~~~~~~~ 101 (252)
T COG0491 35 GGAVLIDTGLGDADAEALLEALA----ALGLDVDAILLTHGHFDHIGGAAVLKEAFG------AAPVIAPAEVPLLL 101 (252)
T ss_pred CceEEEeCCCCchHHHHHHHHHH----HcCCChheeeecCCchhhhccHHHHHhhcC------CceEEccchhhhhh
Confidence 4899999998873 44433222 111289999999999999999977765321 13345666554444
No 36
>KOG1137|consensus
Probab=98.28 E-value=1.9e-07 Score=98.39 Aligned_cols=171 Identities=20% Similarity=0.232 Sum_probs=97.0
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEE-cCccHHHHHH-
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLL-APRQIITWLS- 209 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~-~P~~~~~~L~- 209 (485)
..|+.|++|||.--..+=...+..-....+..++.++|||+|+||...+|.+++...+. ..++.- .+.....||.
T Consensus 34 ~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~---grvfmth~TkAi~kwlls 110 (668)
T KOG1137|consen 34 YKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFI---GRVFMTHPTKAIYKWLLS 110 (668)
T ss_pred ecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeecccc---ceeEEecchHHHHHhhhh
Confidence 88999999999532111001011111345789999999999999999999998754322 222222 2245566653
Q ss_pred HHHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCCcEE
Q psy16250 210 VYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKI 289 (485)
Q Consensus 210 ~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G~kI 289 (485)
.|-.. ...+.+ ..++...+.. .+.. +-....+. +..+..|+ +|.++-+.|..++.-|.++ -+|.+|
T Consensus 111 dyvrv-s~~s~~-----~~Ly~e~dl~---~s~d--Kie~idfh-e~~ev~gI-kf~p~~aGhVlgacMf~ve-iagv~l 176 (668)
T KOG1137|consen 111 DYVRV-SNRSGD-----DRLYTEGDLM---ESMD--KIETIDFH-ETVEVNGI-KFWPYHAGHVLGACMFMVE-IAGVRL 176 (668)
T ss_pred cceEe-eeccCc-----cccccchhHH---Hhhh--hheeeeec-cccccCCe-EEEeeccchhhhheeeeee-eceEEE
Confidence 22210 111110 0122111110 0000 00000111 11233466 8888889999999999999 589999
Q ss_pred EEECCCCCchh--HHHh---hcCCChhhhccCCCc
Q psy16250 290 TYSGDTMPCDA--LVSI---GKNSDLLIHEATHED 319 (485)
Q Consensus 290 vYSGDT~p~~~--l~~~---~~~aDLLIhEATf~d 319 (485)
+|+||-.+.++ +..+ ..+.|+||.|.||.-
T Consensus 177 LyTGd~sreeDrhl~aae~P~~~~dvli~estygv 211 (668)
T KOG1137|consen 177 LYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGV 211 (668)
T ss_pred EeccccchhhcccccchhCCCCCccEEEEEeeeeE
Confidence 99999765432 2221 136899999999863
No 37
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.22 E-value=3e-06 Score=82.73 Aligned_cols=176 Identities=20% Similarity=0.194 Sum_probs=104.3
Q ss_pred ccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCcc
Q psy16250 161 LSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTE 240 (485)
Q Consensus 161 l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 240 (485)
..+|+..||||.|.||+.|+ ++..... ...++-+|||-..+.+.|+.+. |..+. .|. +-...
T Consensus 110 ~Q~I~~y~ITH~HLDHIsGl--VinSp~~-~~qkkkTI~gl~~tIDvL~khv--FN~lv-----WP~-lt~~g------- 171 (356)
T COG5212 110 RQSINSYFITHAHLDHISGL--VINSPDD-SKQKKKTIYGLADTIDVLRKHV--FNWLV-----WPN-LTDSG------- 171 (356)
T ss_pred hhhhhheEeccccccchhce--eecCccc-cccCCceEEechhHHHHHHHHh--hcccc-----cCC-ccccc-------
Confidence 46899999999999999998 2322111 2446779999999999998753 32221 111 00000
Q ss_pred cCCCCCCCCCchhHHHHHhhCCc--cEEEEEeccCC----Cc--cEEEEEEe-CCcEEEEECCCCCch--------hHHH
Q psy16250 241 QHGQNRPALDPDTVQILSSLGLE--SMTTCLVRHCP----NA--FGVTMVTK-SGHKITYSGDTMPCD--------ALVS 303 (485)
Q Consensus 241 ~~g~~~p~~~~~~~~~~~~lGl~--~I~~~~v~H~~----~a--~G~~i~~~-~G~kIvYSGDT~p~~--------~l~~ 303 (485)
.|.- ++.-....+...++++ ++.++||.|+. +. -.|.|... ...-++|.||+.|.. .+++
T Consensus 172 -s~~~--~~qvv~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr 248 (356)
T COG5212 172 -SGTY--RMQVVRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWR 248 (356)
T ss_pred -CceE--EEEEeChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHH
Confidence 0000 0000001122233432 67799999986 33 45555521 256899999998842 2232
Q ss_pred hh------cCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHc----------CCCEEEEecCCCCCC
Q psy16250 304 IG------KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREM----------RAKFVLLTHFSQRYA 358 (485)
Q Consensus 304 ~~------~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~----------~ak~liLTHfS~ry~ 358 (485)
.. +...-++.||+++++...+ .-.+|+|+.-.+.-.+.+ .-=.+++||.-....
T Consensus 249 ~~ae~I~q~~LkgiliEcS~P~~~~~~-~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~ 318 (356)
T COG5212 249 KLAEKITQQQLKGILIECSYPNDVADN-KLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQ 318 (356)
T ss_pred HHHHhhhHHhhCceEEEecCCCCCChh-HhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCccc
Confidence 21 2345678899998875332 467999997776555433 233799999976543
No 38
>PLN02469 hydroxyacylglutathione hydrolase
Probab=98.21 E-value=4.4e-06 Score=83.03 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=39.3
Q ss_pred CceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCc
Q psy16250 134 DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPR 202 (485)
Q Consensus 134 ~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~ 202 (485)
+..+|||+|.. ..+..... ..-..|++|++||.|+||++|+..|.... ..+.||++.
T Consensus 23 ~~~vlIDp~~~--~~il~~l~----~~g~~l~~Il~TH~H~DH~gG~~~l~~~~------~~~~V~~~~ 79 (258)
T PLN02469 23 KDAAVVDPVDP--EKVLQAAH----EHGAKIKLVLTTHHHWDHAGGNEKIKKLV------PGIKVYGGS 79 (258)
T ss_pred CeEEEECCCCh--HHHHHHHH----HcCCcccEEEecCCCCccccCHHHHHHHC------CCCEEEEec
Confidence 47899999953 33333221 11247999999999999999998887542 125677764
No 39
>PLN02398 hydroxyacylglutathione hydrolase
Probab=98.20 E-value=4.1e-06 Score=85.86 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=68.5
Q ss_pred CceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHHHH
Q psy16250 134 DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAA 213 (485)
Q Consensus 134 ~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~~~ 213 (485)
+..++||+|... .+.+... ..-.+|++|++||.|+||++|...|.... +..||++......+.
T Consensus 98 ~~~~vVDP~~a~--~vl~~l~----~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-------ga~V~g~~~~~~~i~---- 160 (329)
T PLN02398 98 GTVGVVDPSEAV--PVIDALS----RKNRNLTYILNTHHHYDHTGGNLELKARY-------GAKVIGSAVDKDRIP---- 160 (329)
T ss_pred CEEEEEcCCCHH--HHHHHHH----hcCCCceEEEECCCCchhhCCHHHHHHhc-------CCEEEEehHHhhhcc----
Confidence 467899998643 2222111 11257999999999999999999886542 357888865332110
Q ss_pred HHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEe-ccCCCccEEEEEEeCCcEEEEE
Q psy16250 214 RFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLV-RHCPNAFGVTMVTKSGHKITYS 292 (485)
Q Consensus 214 ~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v-~H~~~a~G~~i~~~~G~kIvYS 292 (485)
. ++ ..+.... .+ .+|..+++.+.+ .|..+.++|.+. + ..++|+
T Consensus 161 ---~-------~d-~~v~dGd---------------------~i-~lgg~~l~vi~tPGHT~GhI~~~~~--~-~~vLFt 204 (329)
T PLN02398 161 ---G-------ID-IVLKDGD---------------------KW-MFAGHEVLVMETPGHTRGHISFYFP--G-SGAIFT 204 (329)
T ss_pred ---C-------Cc-EEeCCCC---------------------EE-EECCeEEEEEeCCCcCCCCEEEEEC--C-CCEEEE
Confidence 0 00 0111000 01 233336666655 588899999774 2 358999
Q ss_pred CCCCCch
Q psy16250 293 GDTMPCD 299 (485)
Q Consensus 293 GDT~p~~ 299 (485)
|||-+..
T Consensus 205 GDtLf~~ 211 (329)
T PLN02398 205 GDTLFSL 211 (329)
T ss_pred CCCcCCC
Confidence 9997643
No 40
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.08 E-value=5.4e-05 Score=73.50 Aligned_cols=196 Identities=23% Similarity=0.261 Sum_probs=108.3
Q ss_pred cCCceEEEeCCCCHHHHHHHHhC---------------CcccccccCcCEEEeecCchhhhcChHHHHHHHhc-----cC
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYG---------------SAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSR-----VK 191 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G---------------~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~-----~~ 191 (485)
+.+-.||||+|-...- .| || +.......+-+.|.|||.|.|||.-+..=+..... .-
T Consensus 22 t~dv~ILiDpGVsLaP--kR-y~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~eiY 98 (304)
T COG2248 22 TKDVGILIDPGVSLAP--KR-YGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKEIY 98 (304)
T ss_pred cCCeeEEECCccccCc--cc-cCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHHHh
Confidence 6788899999965421 01 22 11223456788999999999999874222221100 02
Q ss_pred CCceeEEEcCccHHHHHHHHH-HHH-Hhh---ccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEE
Q psy16250 192 PECKLTLLAPRQIITWLSVYA-ARF-ESV---GHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMT 266 (485)
Q Consensus 192 ~~~pL~V~~P~~~~~~L~~~~-~~~-~~l---~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~ 266 (485)
.++-|.+-.|....++-+... ..| +.+ ..++.+-+ | . .+ .+|-+.|+
T Consensus 99 ~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~AD----------------g------k-----~f-~fG~t~Ie 150 (304)
T COG2248 99 KGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYAD----------------G------K-----TF-EFGGTVIE 150 (304)
T ss_pred cCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecC----------------C------c-----eE-EeCCEEEE
Confidence 344566666655554433211 011 111 11111111 1 0 12 34655665
Q ss_pred E-EEeccCCC--ccEEEEEE---eCCcEEEEECCCC-C-chhHHHhh--cCCChhhhccCCCchHHHHHhcCCCC----c
Q psy16250 267 T-CLVRHCPN--AFGVTMVT---KSGHKITYSGDTM-P-CDALVSIG--KNSDLLIHEATHEDELEKEAALKMHS----T 332 (485)
Q Consensus 267 ~-~~v~H~~~--a~G~~i~~---~~G~kIvYSGDT~-p-~~~l~~~~--~~aDLLIhEATf~d~~~e~A~~k~Hs----T 332 (485)
+ -|+.|+.. -.||++.. .++.+|+|+.|+. | .+..+++. +.+|++|...-...-+ ....+-. +
T Consensus 151 fS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~l---g~r~~~~~~E~~ 227 (304)
T COG2248 151 FSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLL---GYRVGPKSLEKG 227 (304)
T ss_pred ecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHh---hhhcChHHHHHH
Confidence 3 67899984 57887764 4667999999995 4 34444443 4899999997543111 0111112 3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCChHH
Q psy16250 333 VSQAIRIGREMRAKFVLLTHFSQRYAKLPR 362 (485)
Q Consensus 333 ~~eAi~va~~~~ak~liLTHfS~ry~~~~~ 362 (485)
+...-+++.+.+ +++|+-|+--|-.+.++
T Consensus 228 irNl~~ii~~~~-~~lViDHHllRD~~y~e 256 (304)
T COG2248 228 IRNLERIIEETN-ATLVIDHHLLRDKNYRE 256 (304)
T ss_pred HHHHHHHHHhCc-ceEEEeehhhcCCCHHH
Confidence 333344555555 78999999888776543
No 41
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.03 E-value=1.2e-05 Score=79.50 Aligned_cols=50 Identities=24% Similarity=0.210 Sum_probs=34.5
Q ss_pred CCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHH
Q psy16250 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKA 186 (485)
Q Consensus 133 ~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~ 186 (485)
.+..+|||+|......+.+... ..-..|++|++||.|+||+.|...|...
T Consensus 35 ~~~avlIDP~~~~~~~~l~~l~----~~g~~i~~Il~TH~H~DHigg~~~l~~~ 84 (251)
T PLN02962 35 DKPALLIDPVDKTVDRDLSLVK----ELGLKLIYAMNTHVHADHVTGTGLLKTK 84 (251)
T ss_pred CCEEEEECCCCCcHHHHHHHHH----HCCCeeEEEEcCCCCchhHHHHHHHHHH
Confidence 4578999999643333333221 1113588999999999999999888653
No 42
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.00 E-value=6.8e-05 Score=84.22 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=41.5
Q ss_pred cCCceEEEeCCCCH----------HHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcC
Q psy16250 132 GPDTCILLDCGEGT----------YSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAP 201 (485)
Q Consensus 132 ~~~~~ILlDcGegt----------~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P 201 (485)
.+++.+|+|||++. ..-|++ .| ++ |++|+|||.|.||++|+..++.... ...++.|
T Consensus 457 ~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~-~G------i~-ID~lilTH~d~DHiGGl~~ll~~~~------v~~i~~~ 522 (662)
T TIGR00361 457 ANGKGILYDTGEPWREGSLGEKVIIPFLTA-KG------IK-LEALILSHADQDHIGGAEIILKHHP------VKRLVIP 522 (662)
T ss_pred ECCeEEEEeCCCCCCCCCccHHHHHHHHHH-cC------CC-cCEEEECCCchhhhCcHHHHHHhCC------ccEEEec
Confidence 45688999999752 122322 34 55 9999999999999999999987541 2245666
Q ss_pred cc
Q psy16250 202 RQ 203 (485)
Q Consensus 202 ~~ 203 (485)
..
T Consensus 523 ~~ 524 (662)
T TIGR00361 523 KG 524 (662)
T ss_pred cc
Confidence 54
No 43
>KOG3798|consensus
Probab=97.87 E-value=5.1e-05 Score=73.57 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=100.7
Q ss_pred ccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccC
Q psy16250 159 TLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEG 238 (485)
Q Consensus 159 ~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~ 238 (485)
..+.+++-+.+||.|.||+ .+..+.... +...++ -++|.++..|...-. ..- .+ .+......
T Consensus 128 ~~~p~~d~~~vsh~h~dhl-d~~~~~~~~---~~~~~~-wfvp~g~k~~m~~~g-------c~~-v~--el~wwe~~--- 189 (343)
T KOG3798|consen 128 EDLPDLDFAVVSHDHYDHL-DADAVKKIT---DRNPQI-WFVPLGMKKWMEGDG-------SST-VT--ELNWGESS--- 189 (343)
T ss_pred ccCCCCceecccccccccc-chHHHHhhh---ccCccc-eeehhhhhheecCCC-------CCc-ee--Eeeccchh---
Confidence 4567899999999999995 455554322 234455 778888777654310 000 00 01100000
Q ss_pred cccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCC----------ccEEEEEEeCCcEEEEECCCCCch-hHHHhhc-
Q psy16250 239 TEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPN----------AFGVTMVTKSGHKITYSGDTMPCD-ALVSIGK- 306 (485)
Q Consensus 239 ~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~----------a~G~~i~~~~G~kIvYSGDT~p~~-~l~~~~~- 306 (485)
+...--....|.+.|+.|... =.+|.+.. .+.++.|.|||++|+ .+.++++
T Consensus 190 ----------------~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g-~~nrfffaGDTGyc~~~F~~Iger 252 (343)
T KOG3798|consen 190 ----------------EFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIG-ENNRFFFAGDTGYCDGEFKKIGER 252 (343)
T ss_pred ----------------ceecCCcEEEEEEcchhhhcccccccCCcceeeeeEEec-CCceEEecCCCCcccHHHHHHHHh
Confidence 001111123566778888642 13666664 566999999999998 6777764
Q ss_pred --CCChhhhcc-CCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCC
Q psy16250 307 --NSDLLIHEA-THEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQ 355 (485)
Q Consensus 307 --~aDLLIhEA-Tf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~ 355 (485)
.+||..+-+ .|+.+.. ....|-.++||+++-+..+|++.+-.|...
T Consensus 253 fGpfdLAaiPiGaYePrWf---mK~~HInPeEav~Ihkdv~arns~gIHWGT 301 (343)
T KOG3798|consen 253 FGPFDLAAIPIGAYEPRWF---MKSQHINPEEAVEIHKDVRAKNSIGIHWGT 301 (343)
T ss_pred cCCcceeeccccccCchhh---cccccCCHHHHHHHHHHHhhhcceeEeeee
Confidence 378877665 3444322 356799999999999999999999999764
No 44
>PRK11539 ComEC family competence protein; Provisional
Probab=97.65 E-value=0.00097 Score=76.06 Aligned_cols=49 Identities=35% Similarity=0.552 Sum_probs=36.4
Q ss_pred cCCceEEEeCCCCHH------HHH---HHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTY------SQL---VRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187 (485)
Q Consensus 132 ~~~~~ILlDcGegt~------~qL---~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~ 187 (485)
.+++.+|+|+|.+.. ..+ .+..| + ++++|+|||.|.||++|+..++...
T Consensus 518 ~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~G------i-~lD~lilSH~d~DH~GGl~~Ll~~~ 575 (755)
T PRK11539 518 RNGKAILYDTGNAWPTGDSAQQVIIPWLRWHG------L-TPEGIILSHEHLDHRGGLASLLHAW 575 (755)
T ss_pred ECCEEEEEeCCCCCCCCcchHHHHHHHHHHcC------C-CcCEEEeCCCCcccCCCHHHHHHhC
Confidence 578899999997421 111 12233 4 5999999999999999999998653
No 45
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.40 E-value=0.001 Score=67.20 Aligned_cols=62 Identities=29% Similarity=0.373 Sum_probs=45.7
Q ss_pred cCCceEEEeCCC--CH---HHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccH
Q psy16250 132 GPDTCILLDCGE--GT---YSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQI 204 (485)
Q Consensus 132 ~~~~~ILlDcGe--gt---~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~ 204 (485)
.++..+|+|.|. +. ..-|+. .| +++|+.+++||.|+||++|+..++... .-+.+.++.+...
T Consensus 61 ~~~~~~l~dtg~~~~~~~iip~Lk~-~G------V~~iD~lIlTH~d~DHiGg~~~vl~~~----~v~~~~i~~~~~~ 127 (293)
T COG2333 61 SEGKTILYDTGNSMGQDVIIPYLKS-LG------VRKLDQLILTHPDADHIGGLDEVLKTI----KVPELWIYAGSDS 127 (293)
T ss_pred eCCceEEeecCcccCceeehhhHhH-cC------CccccEEEeccCCccccCCHHHHHhhC----CCCcEEEeCCCCc
Confidence 456689999887 32 222333 34 789999999999999999999999753 3457888887653
No 46
>KOG0813|consensus
Probab=97.22 E-value=0.00071 Score=66.92 Aligned_cols=94 Identities=15% Similarity=0.279 Sum_probs=59.8
Q ss_pred cccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHHHHHHHhhccccccccccccccCCCccCc
Q psy16250 160 LLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGT 239 (485)
Q Consensus 160 ~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 239 (485)
.-.+|.+||.||.|+||.+|+..|...+. ..+.+|+... ... +.+ ... .
T Consensus 48 ~~~~l~~Il~THhH~DHsGGn~~i~~~~~-----~~~~v~g~~~--~r~-------~~i-------~~~-~--------- 96 (265)
T KOG0813|consen 48 ENRRLTAILTTHHHYDHSGGNEDIKREIP-----YDIKVIGGAD--DRI-------PGI-------TRG-L--------- 96 (265)
T ss_pred ccCceeEEEeccccccccCcHHHHHhhcc-----CCcEEecCCh--hcC-------ccc-------ccc-C---------
Confidence 34689999999999999999999876531 3577887751 000 000 000 0
Q ss_pred ccCCCCCCCCCchhHHHHHhhCCccEEEEEe-ccCCCccEEEEEEeCCcEEEEECCCCC
Q psy16250 240 EQHGQNRPALDPDTVQILSSLGLESMTTCLV-RHCPNAFGVTMVTKSGHKITYSGDTMP 297 (485)
Q Consensus 240 ~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v-~H~~~a~G~~i~~~~G~kIvYSGDT~p 297 (485)
.+| +.+ .+|...|+.+.. .|..+.+.|.+....|-..+|+|||..
T Consensus 97 -~~~-----------e~~-~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf 142 (265)
T KOG0813|consen 97 -KDG-----------ETV-TVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLF 142 (265)
T ss_pred -CCC-----------cEE-EECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCcee
Confidence 001 012 223337777665 588889999987334678999999854
No 47
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=97.02 E-value=0.0026 Score=66.20 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=79.1
Q ss_pred cCCceEEEeCCCC-HHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHH
Q psy16250 132 GPDTCILLDCGEG-TYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSV 210 (485)
Q Consensus 132 ~~~~~ILlDcGeg-t~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~ 210 (485)
.++..+|||.+.. +..++..... -...+++|++|+++|.-.||.++++.++... +...|+|+.....+|+.
T Consensus 42 ~~~k~aLID~~~~~~~~~~l~~l~--~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~------p~a~ii~s~~~~~~L~~ 113 (388)
T COG0426 42 VGDKTALIDTVGEKFFDEYLENLS--KYIDPKEIDYIIVNHTEPDHSGSLPELLELA------PNAKIICSKLAARFLKG 113 (388)
T ss_pred eCCcEEEECCCCcchHHHHHHHHH--hhcChhcCeEEEECCCCcchhhhHHHHHHhC------CCCEEEeeHHHHHHHHH
Confidence 6889999998754 4444443222 1234678999999999999999999998643 36789999988888887
Q ss_pred HHHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEe--ccCCCccEEEEEEeCCcE
Q psy16250 211 YAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLV--RHCPNAFGVTMVTKSGHK 288 (485)
Q Consensus 211 ~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v--~H~~~a~G~~i~~~~G~k 288 (485)
+... .. .+..+. .| +.+ .+|..+++++++ -|.+.++-.-. ..-+
T Consensus 114 ~~~~--~~--~~~ivk---------------~G-----------d~l-dlGg~tL~Fi~ap~LHWPd~m~TYd---~~~k 159 (388)
T COG0426 114 FYHD--PE--WFKIVK---------------TG-----------DTL-DLGGHTLKFIPAPFLHWPDTMFTYD---PEDK 159 (388)
T ss_pred hcCC--cc--ceeecC---------------CC-----------CEe-ccCCcEEEEEeCCCCCCCCceeEee---cCCc
Confidence 5421 00 011111 11 012 456556666665 57776543222 3458
Q ss_pred EEEECCCC
Q psy16250 289 ITYSGDTM 296 (485)
Q Consensus 289 IvYSGDT~ 296 (485)
|+||+|-.
T Consensus 160 ILFS~D~f 167 (388)
T COG0426 160 ILFSCDAF 167 (388)
T ss_pred EEEccccc
Confidence 99999963
No 48
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.02 E-value=0.00071 Score=52.50 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=36.6
Q ss_pred cCCceEEE-eCCCCHHHHHHHHhCCcccccccCcCEEEeecCc-hhhhcC
Q psy16250 132 GPDTCILL-DCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLH-ADHHLG 179 (485)
Q Consensus 132 ~~~~~ILl-DcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~H-aDH~~G 179 (485)
.+...+|| +||||+++-+.. .+ ..+.+++.||||+.+ +|+++|
T Consensus 19 ~d~~rYlFGn~gEGtQR~~~e-~~----ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 19 FDSRRYLFGNCGEGTQRACNE-HK----IKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred eCCceEEeccCCcHHHHHHHH-cC----CCccccceEEECCCCcccccCC
Confidence 56789999 999999877665 33 567899999999999 999887
No 49
>KOG1135|consensus
Probab=96.88 E-value=0.0051 Score=67.21 Aligned_cols=164 Identities=19% Similarity=0.167 Sum_probs=91.6
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHH--
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLS-- 209 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~-- 209 (485)
.++-.||||||.+-.-.+.- + ......+..|++|+|||...=|++||+..+..... ..+||++-.+...=+
T Consensus 22 iD~~~iLiDcGwd~~f~~~~-i-~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl-----~~~VYAT~PV~~mG~m~ 94 (764)
T KOG1135|consen 22 IDGVRILIDCGWDESFDMSM-I-KELKPVIPTIDAILLSHPDILHLGALPYAVGKLGL-----NAPVYATLPVIKMGQMF 94 (764)
T ss_pred EcCeEEEEeCCCcchhccch-h-hhhhcccccccEEEecCCChHHhccchhhHhhCCc-----cceEEEecchhhhhhhh
Confidence 67889999999874211100 0 12334567899999999999999999988765421 267888766544211
Q ss_pred HHHHHHHhhc-cccccccccccccCCCc----c-CcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEE
Q psy16250 210 VYAARFESVG-HLYRLVPLSLFNTKGLI----E-GTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVT 283 (485)
Q Consensus 210 ~~~~~~~~l~-~~~~~v~~~l~~~~~~~----~-~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~ 283 (485)
.|........ +.+.. +...+++ . .+..+.+ + .. ... .--|+ +|++.++.|+.+-.-|+|.
T Consensus 95 myD~~~S~~~~~df~l-----~sldDvd~aFd~I~~LKYsQ--~--v~-L~g--k~~Gl-~itaynAGhmiGGsIWkI~- 160 (764)
T KOG1135|consen 95 MYDLYRSHGNVGDFDL-----FSLDDVDAAFDKIIQLKYSQ--P--VA-LKG--KGSGL-TITAYNAGHMIGGSIWKIS- 160 (764)
T ss_pred HHHHHhcccccccccc-----cchhhhHHHHhheeeeeccc--e--EE-ecc--ccCce-EEeeecCCCccCceEEEEE-
Confidence 1111001000 01111 1100000 0 0000000 0 00 000 01366 8999999999988889998
Q ss_pred eCCcEEEEECCCCCch------hHHHhhcCCChhhhccC
Q psy16250 284 KSGHKITYSGDTMPCD------ALVSIGKNSDLLIHEAT 316 (485)
Q Consensus 284 ~~G~kIvYSGDT~p~~------~l~~~~~~aDLLIhEAT 316 (485)
..|-+|+|.-|-.-.. -..+....+.+||.+|.
T Consensus 161 k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~ 199 (764)
T KOG1135|consen 161 KVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDAN 199 (764)
T ss_pred ecCceEEEEEecccchhcccCCccccccCCcceEEeccc
Confidence 6789999999963221 11233356778888774
No 50
>KOG0814|consensus
Probab=95.85 E-value=0.016 Score=53.66 Aligned_cols=45 Identities=27% Similarity=0.309 Sum_probs=32.7
Q ss_pred cCCceEEEeCCCCHH---HHHHHHhCCcccccccCcCEEEeecCchhhhcChHHH
Q psy16250 132 GPDTCILLDCGEGTY---SQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSV 183 (485)
Q Consensus 132 ~~~~~ILlDcGegt~---~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~L 183 (485)
..+..+|||+=-.+. .||.+.+| -++.+-+=||.|+||+.|...|
T Consensus 30 ~~~~AviIDPV~et~~RD~qlikdLg-------l~LiYa~NTH~HADHiTGtg~L 77 (237)
T KOG0814|consen 30 KTGKAVIIDPVLETVSRDAQLIKDLG-------LDLIYALNTHVHADHITGTGLL 77 (237)
T ss_pred CCCceEEecchhhcccchHHHHHhcC-------ceeeeeecceeecccccccchH
Confidence 567889999865543 25656555 3566778899999999998544
No 51
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.76 E-value=0.046 Score=57.94 Aligned_cols=74 Identities=22% Similarity=0.224 Sum_probs=51.2
Q ss_pred eeeeee-cCCceEEEeCCCCH--HH-HH---HHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEE
Q psy16250 126 LAIRGP-GPDTCILLDCGEGT--YS-QL---VRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTL 198 (485)
Q Consensus 126 RNvS~~-~~~~~ILlDcGegt--~~-qL---~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V 198 (485)
-|.|=+ .+.+.|+||.=..+ .. .| .++.| -+-|.+|+-||.|+||++|.-+++..-.. ....+.|
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g------~rPV~aVIYtHsH~DHfGGVkGiv~eadV--~sGkV~i 197 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRG------QRPVVAVIYTHSHSDHFGGVKGIVSEADV--KSGKVQI 197 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcC------CCCeEEEEeecccccccCCeeeccCHHHc--ccCceeE
Confidence 344444 56788999974332 11 11 23333 46799999999999999999998876542 3457999
Q ss_pred EcCccHHHH
Q psy16250 199 LAPRQIITW 207 (485)
Q Consensus 199 ~~P~~~~~~ 207 (485)
++|.+..+-
T Consensus 198 iAP~GFme~ 206 (655)
T COG2015 198 IAPAGFMEE 206 (655)
T ss_pred ecchhHHHH
Confidence 999987654
No 52
>KOG3592|consensus
Probab=87.85 E-value=0.35 Score=53.55 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=45.1
Q ss_pred eeeeeee--cCCceEEEeCCCC---HHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHH
Q psy16250 125 VLAIRGP--GPDTCILLDCGEG---TYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKA 186 (485)
Q Consensus 125 ~RNvS~~--~~~~~ILlDcGeg---t~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~ 186 (485)
-||.++. .+|-+||++.|.. .+..|.|+ +.+|++|+|||.-+|...||.+|++.
T Consensus 46 g~gdaALFavnGf~iLv~GgserKS~fwklVrH--------ldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 46 GRGDAALFAVNGFNILVNGGSERKSCFWKLVRH--------LDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred CCCcceeEeecceEEeecCCcccccchHHHHHH--------HhhhhhhhhcccccCccccchHHHHH
Confidence 6888888 7888899998875 44456665 67999999999999999999999864
No 53
>KOG2121|consensus
Probab=84.22 E-value=0.53 Score=52.48 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=61.2
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.+...+++-||||++.-+.++ ...+.+++.||+|=.+++-++|+++++......+...++.++||..+..++...
T Consensus 71 ~~~~~~~~n~Geg~qr~~~eh-----k~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g~~~l~gP~~l~~~l~~m 145 (746)
T KOG2121|consen 71 DDRKRFIFNCGEGTQRLLTEH-----KIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPGPVVLHGPSDLNYILSAM 145 (746)
T ss_pred cchhhhhhhhhHHHHHHHHHh-----hhhhhhhhheEeecccHHHhCCCccceeehhhcCCCCcccccCchhHHHHHHHH
Confidence 567789999999998744332 355789999999999999999999998766554444489999999998888765
Q ss_pred HH
Q psy16250 212 AA 213 (485)
Q Consensus 212 ~~ 213 (485)
..
T Consensus 146 r~ 147 (746)
T KOG2121|consen 146 RY 147 (746)
T ss_pred HH
Confidence 43
No 54
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=71.60 E-value=27 Score=33.09 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=54.9
Q ss_pred cCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcChHHHHHHHhccCCCceeEEEcCccHHHHHHHH
Q psy16250 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVY 211 (485)
Q Consensus 132 ~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL~~Ll~~~~~~~~~~pL~V~~P~~~~~~L~~~ 211 (485)
.++++||||.-+-.-..... + ..+..++.|+||| .||...-..+.... ...||+|..-.+.
T Consensus 30 ~p~GnilIDP~~ls~~~~~~-l-----~a~ggv~~IvLTn--~dHvR~A~~ya~~~-------~a~i~~p~~d~~~---- 90 (199)
T PF14597_consen 30 RPEGNILIDPPPLSAHDWKH-L-----DALGGVAWIVLTN--RDHVRAAEDYAEQT-------GAKIYGPAADAAQ---- 90 (199)
T ss_dssp -TT--EEES-----HHHHHH-H-----HHTT--SEEE-SS--GGG-TTHHHHHHHS---------EEEEEGGGCCC----
T ss_pred cCCCCEEecCccccHHHHHH-H-----HhcCCceEEEEeC--ChhHhHHHHHHHHh-------CCeeeccHHHHhh----
Confidence 78999999998766444333 1 2355899999996 69988876665433 3567788653311
Q ss_pred HHHHHhhccccccccccccccCCCccCcccCCCCCCCCCchhHHHHHhhCCccEEEEEeccCCCccEEEEEEeCCcEEEE
Q psy16250 212 AARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITY 291 (485)
Q Consensus 212 ~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~g~~~p~~~~~~~~~~~~lGl~~I~~~~v~H~~~a~G~~i~~~~G~kIvY 291 (485)
+.+-+..++.+.+ ...+...+..++-.|+++..++.++ + ++.+
T Consensus 91 ----------~p~~~D~~l~dge-----------------------~i~~g~~vi~l~G~ktpGE~ALlle--d--~vLi 133 (199)
T PF14597_consen 91 ----------FPLACDRWLADGE-----------------------EIVPGLWVIHLPGSKTPGELALLLE--D--RVLI 133 (199)
T ss_dssp -----------SS--SEEE-TT------------------------BSSTTEEEEEE-SSSSTTEEEEEET--T--TEEE
T ss_pred ----------CCCCCccccccCC-----------------------CccCceEEEEcCCCCCCceeEEEec--c--ceEE
Confidence 1111111221110 0122236667777788999999986 3 4999
Q ss_pred ECCCC
Q psy16250 292 SGDTM 296 (485)
Q Consensus 292 SGDT~ 296 (485)
+||-.
T Consensus 134 ~GDl~ 138 (199)
T PF14597_consen 134 TGDLL 138 (199)
T ss_dssp ESSSE
T ss_pred eccee
Confidence 99953
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=70.63 E-value=6.3 Score=27.95 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=23.9
Q ss_pred cCCCCcHHHHHHHHHHcCCCEEEEecC
Q psy16250 327 LKMHSTVSQAIRIGREMRAKFVLLTHF 353 (485)
Q Consensus 327 ~k~HsT~~eAi~va~~~~ak~liLTHf 353 (485)
-.+|++.++..++.+.+++++++|.|=
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHG 40 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHG 40 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESS
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecC
Confidence 358999999999999999999999994
No 56
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=43.09 E-value=29 Score=34.71 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=45.4
Q ss_pred EEECCCCCchhHHHhhcCCChhhhccCCCchH----HHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCC
Q psy16250 290 TYSGDTMPCDALVSIGKNSDLLIHEATHEDEL----EKEAALKMHSTVSQAIRIGREMRAKFVLLTHFS 354 (485)
Q Consensus 290 vYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~----~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS 354 (485)
++.||-...+.+.++.+|+|++||=|...+.. .+....-.=-.....++.+++.+++++|.|==.
T Consensus 49 ~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~ 117 (280)
T PF01073_consen 49 YIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSI 117 (280)
T ss_pred EEEeccccHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 88999988899999999999999998753221 111111111234456778888899999988644
No 57
>KOG4736|consensus
Probab=42.14 E-value=25 Score=35.58 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=35.6
Q ss_pred eeeeeecCCceEEEeCCCCHHHHHHHHhCCcccccccCcCEEEeecCchhhhcCh
Q psy16250 126 LAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGL 180 (485)
Q Consensus 126 RNvS~~~~~~~ILlDcGegt~~qL~r~~G~~~~~~l~~I~~IfISH~HaDH~~GL 180 (485)
+++-+..++..+++|.|-+. |.. .| ..+..|+.+.+||.|.+|.+++
T Consensus 96 ~~tl~~d~~~v~v~~~gls~---lak-~~----vt~d~i~~vv~t~~~~~hlgn~ 142 (302)
T KOG4736|consen 96 QITLVVDGGDVVVVDTGLSV---LAK-EG----VTLDQIDSVVITHKSPGHLGNN 142 (302)
T ss_pred ccceeecCCceEEEecCCch---hhh-cC----cChhhcceeEEeccCccccccc
Confidence 33334478889999999983 222 44 4467999999999999998776
No 58
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=28.80 E-value=78 Score=22.92 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=24.1
Q ss_pred EEEEecCCC-ccCChhHHHHHHhCCC--------CceEEecCCCC
Q psy16250 50 LVAHFSPHH-IMSHPRYKEFMSKFPS--------TTQHLVLNESN 85 (485)
Q Consensus 50 ~v~h~~~~~-v~~~~~y~~~~~~f~~--------~~~Hi~~~~~~ 85 (485)
+.|++++.. -......++++..+|. .+.|+|++...
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~ 46 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDA 46 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCC
Confidence 345666654 4555666777777764 78999998653
No 59
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=28.64 E-value=66 Score=24.54 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=27.1
Q ss_pred EEEEecCCCccCChhHHHHHHhCC--------CCceEEecCCC
Q psy16250 50 LVAHFSPHHIMSHPRYKEFMSKFP--------STTQHLVLNES 84 (485)
Q Consensus 50 ~v~h~~~~~v~~~~~y~~~~~~f~--------~~~~Hi~~~~~ 84 (485)
+.+++.+.+-.....+.+++.++| +.+.|+|+...
T Consensus 9 ~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~ 51 (78)
T PF00533_consen 9 CTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNP 51 (78)
T ss_dssp EEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSS
T ss_pred EEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCC
Confidence 566777777788888899999886 45788887755
No 60
>PLN02214 cinnamoyl-CoA reductase
Probab=26.21 E-value=68 Score=32.81 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=38.0
Q ss_pred EEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEec
Q psy16250 290 TYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTH 352 (485)
Q Consensus 290 vYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTH 352 (485)
++.||..-...+.++.+++|.+||=|.......+......-......++.+++.+++++|++=
T Consensus 64 ~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~S 126 (342)
T PLN02214 64 LCKADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITS 126 (342)
T ss_pred EEecCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 456887766677777889999999986432211111111111234456677777888877653
No 61
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=24.29 E-value=1e+02 Score=27.91 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCcEEEEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCCCEEEEecCCCC
Q psy16250 285 SGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQR 356 (485)
Q Consensus 285 ~G~kIvYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~ak~liLTHfS~r 356 (485)
+|+.+-++....|.+--+ -..|+| +|.|||-. .+..+..+.--+.|||++++++-+..
T Consensus 66 ~g~~i~~~~~~~p~~~~w-~~~gvD-iVie~tG~------------f~~~~~~~~hl~~GakkViisap~~~ 123 (149)
T smart00846 66 NGKKIKVLAERDPANLPW-KELGVD-IVVECTGK------------FTTREKASAHLKAGAKKVIISAPAKD 123 (149)
T ss_pred CCEEEEEEecCChHHCcc-cccCCe-EEEecccc------------ccchHHHHHHHHcCCCEEEeCCCCCC
Confidence 577777776655543222 225788 67899721 12223334444569999999998664
No 62
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=24.08 E-value=56 Score=32.64 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=29.8
Q ss_pred CceeeeccccccccCChhhhhhhHHHHHHhHHhhHHHHHHHHHHHHh
Q psy16250 415 PEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNL 461 (485)
Q Consensus 415 ~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 461 (485)
.+.|+-| =|...+..+-.++|+||++|.+. +|+.+++-||.+
T Consensus 22 ~q~swNy----ERmq~~G~~ysmlPalKKlY~~~-k~~~~~AlkrHl 63 (269)
T COG3716 22 LQASFNY----ERMQALGYLYAMLPALKKLYPDD-KEDLKEALKRHL 63 (269)
T ss_pred HhccccH----HHHhhhhHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Confidence 4455545 45577888889999999999876 455566666655
No 63
>PHA02893 hypothetical protein; Provisional
Probab=23.89 E-value=20 Score=29.29 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhhhccccccccCCCceeeeccccccccCChhhhh
Q psy16250 392 KKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLK 435 (485)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~~~~~~~~~ 435 (485)
+|||.+.+...++..+.++...+=..|-.-++.-|.++|+.++.
T Consensus 11 rkRK~~~~t~~~~e~~T~~~~d~C~TCSsC~SKLV~~Sdvtk~s 54 (88)
T PHA02893 11 RKKKSRSATSTRKEEETAIPEDACTTCQICQSKLVMFSGVNKYK 54 (88)
T ss_pred hccCCccccccccccceecCCCCCcchhhhhcceeeeeccchhh
Confidence 34444444444444555544445566766777778888887765
No 64
>PRK09875 putative hydrolase; Provisional
Probab=23.86 E-value=1e+02 Score=31.25 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=54.7
Q ss_pred HHHHHHHHcCC--CEEEEecCCCCCCChHHHhhhcCcceeeeccCcEeeccchhhhhHHHHHHHHHHHhhhhc-cccccc
Q psy16250 335 QAIRIGREMRA--KFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKV-NNSIQI 411 (485)
Q Consensus 335 eAi~va~~~~a--k~liLTHfS~ry~~~~~l~~~~~~~v~iA~Dgm~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 411 (485)
+.++++++.|+ .+++++|.... ++...+.+-....+.+.||..-...- .. --+|-+.-+...+.. .+++-+
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d~~-~d~~~~~~l~~~G~~l~fD~~g~~~~-~p----d~~r~~~i~~L~~~Gy~drilL 240 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCDLK-DNLDNILKMIDLGAYVQFDTIGKNSY-YP----DEKRIAMLHALRDRGLLNRVML 240 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCCCC-CCHHHHHHHHHcCCEEEeccCCCccc-CC----HHHHHHHHHHHHhcCCCCeEEE
Confidence 44788999998 99999999843 44443334345678899995331100 00 012333334444443 444444
Q ss_pred cCCCceeeecccccc-ccCC------hhhhhhhHHHHHHh-HHhh
Q psy16250 412 SSRPEICREFDSKKI-SLAN------LPKLKLFYPALKAM-FAEY 448 (485)
Q Consensus 412 ~~~~~~~~~~d~~~v-~~~~------~~~~~~~~~~~~~~-f~~~ 448 (485)
+.+ .-.. .+.. -..+..|+|.|++. |.++
T Consensus 241 S~D--------~~~~~~~~~~gg~G~~~i~~~~ip~L~~~Gvse~ 277 (292)
T PRK09875 241 SMD--------ITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQA 277 (292)
T ss_pred eCC--------CCCcccccccCCCChhHHHHHHHHHHHHcCCCHH
Confidence 333 2111 1111 34688899998886 5433
No 65
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.15 E-value=1.4e+02 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=37.5
Q ss_pred eCCcEEEEECCCCCchhHHHhh--cCCChhhhccCCCchHHHHHhcCCCCcHHHHHHHHHHcCC
Q psy16250 284 KSGHKITYSGDTMPCDALVSIG--KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRA 345 (485)
Q Consensus 284 ~~G~kIvYSGDT~p~~~l~~~~--~~aDLLIhEATf~d~~~e~A~~k~HsT~~eAi~va~~~~a 345 (485)
..||.++|.|-..|.+++++.+ .++|++..-++...... .+.+.++..++.+.
T Consensus 25 ~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~---------~~~~~~~~L~~~~~ 79 (122)
T cd02071 25 DAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMT---------LFPEVIELLRELGA 79 (122)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHH---------HHHHHHHHHHhcCC
Confidence 5799999999888888887775 47899988777543221 23556666666655
No 66
>CHL00194 ycf39 Ycf39; Provisional
Probab=20.48 E-value=1.1e+02 Score=30.68 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=35.8
Q ss_pred EEECCCCCchhHHHhhcCCChhhhccCCCchHHHHHhcCCC-CcHHHHHHHHHHcCCCEEEEe
Q psy16250 290 TYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMH-STVSQAIRIGREMRAKFVLLT 351 (485)
Q Consensus 290 vYSGDT~p~~~l~~~~~~aDLLIhEATf~d~~~e~A~~k~H-sT~~eAi~va~~~~ak~liLT 351 (485)
++.||..-.+.+.++.+++|.+||=+........ .....| ......++.+++.+++++|..
T Consensus 47 ~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~-~~~~~~~~~~~~l~~aa~~~gvkr~I~~ 108 (317)
T CHL00194 47 LVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLY-NAKQIDWDGKLALIEAAKAAKIKRFIFF 108 (317)
T ss_pred EEECCCCCHHHHHHHHCCCCEEEECCCCCCCCcc-chhhhhHHHHHHHHHHHHHcCCCEEEEe
Confidence 4568877666777888999999995432111000 000011 112346677888899887754
Done!