RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16250
(485 letters)
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 190 bits (486), Expect = 1e-57
Identities = 43/258 (16%), Positives = 77/258 (29%), Gaps = 52/258 (20%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW----- 187
+L+DCG G +QL + S + AV +SH H DH + + A
Sbjct: 51 DGFRLLVDCGSGVLAQLQKYIT------PSDIDAVVLSHYHHDHVADIGVLQYARLITSA 104
Query: 188 --SRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQN 245
++ L + ++ E P
Sbjct: 105 TKGQLPE---LPIYGHTF--DENGFHSLTHEPHTKGIPYNPEETLQIGPF---------- 149
Query: 246 RPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIG 305
S++ H F + +T + YS D+ +
Sbjct: 150 ------------------SISFLKTVHPVTCFAMR-ITAGNDIVVYSADSSYIPEFIPFT 190
Query: 306 KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLN- 364
K++DL I E +EAA H ++ I ++ K +LLTH +
Sbjct: 191 KDADLFICECNMYA--HQEAAKAGHMNSTEVASIAKDANVKELLLTHLPHTGNPADLVTE 248
Query: 365 --KDLSENVGIAFDNMRF 380
+ S ++ +A +
Sbjct: 249 AKQIFSGHITLAHSGYVW 266
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 186 bits (473), Expect = 2e-55
Identities = 64/289 (22%), Positives = 108/289 (37%), Gaps = 37/289 (12%)
Query: 124 QVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSV 183
+L ++ P L DCGEGT QL+ + +L ++ISHLH DH GL +
Sbjct: 23 ILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFN-----PGKLDKIFISHLHGDHLFGLPGL 77
Query: 184 IKAWSRVKPECKLTLLAPRQIITW----LSVYAARFESVGHLYRLVPLSLFNTKGLIEGT 239
+ + S LT+ P+ I + L + + + + + + +
Sbjct: 78 LCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTA 137
Query: 240 EQHGQNRPALDPD----------TVQILSSLGL------------ESMTTCLVRHCPNAF 277
Q L + G+ +++T R A
Sbjct: 138 YPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGAD 197
Query: 278 GVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAI 337
G + GDT PCDA + + K D+++HEAT + +E +A + HS+ QA
Sbjct: 198 -YLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAA 256
Query: 338 RIGREMRAKFVLLTHFSQRYAK--LPRLNKDLSE---NVGIAFDNMRFP 381
+ RE +++TH S RY L ++ +A D F
Sbjct: 257 TLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDFTVFN 305
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 184 bits (469), Expect = 1e-54
Identities = 64/313 (20%), Positives = 115/313 (36%), Gaps = 36/313 (11%)
Query: 114 SGFPLLDKGKQVLAIRGPGPD-TCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHL 172
+G P + +A++ + L DCGE T Q++ ++ ++I+H+
Sbjct: 10 AGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIK-----PRKIEKIFITHM 64
Query: 173 HADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSV----------YAARFESVGHLY 222
H DH GL ++ + S E +LT+ P+ I ++ Y + +
Sbjct: 65 HGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGI 124
Query: 223 RL----VPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLES--MTTCLVRHCPNA 276
++ + +E Q + +L + + + + +
Sbjct: 125 VFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVT 184
Query: 277 FG---------VTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAAL 327
K G + +SGDT D L + ++ D+++HEAT E K A
Sbjct: 185 LEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYD 244
Query: 328 KMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLN-----KDLSENVGIAFDNMRFPE 382
HST QA +E RAK ++LTH S RY L D+ N A+D +
Sbjct: 245 YYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFPNSVAAYDFLEVNV 304
Query: 383 KKKKKKKKKKKRK 395
+ K +
Sbjct: 305 PRGKLAAALEHHH 317
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 143 bits (363), Expect = 1e-39
Identities = 47/270 (17%), Positives = 82/270 (30%), Gaps = 79/270 (29%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWS---- 188
IL D GEG + L + V+++H H DH GL+ V+ +
Sbjct: 18 SPERILFDAGEGVSTTLGSK--------VYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMG 69
Query: 189 -RVKPECKLTLLAPRQIITWLSVYAARFESVGHL---YRLVPLSLFNTKGLIEGTEQHGQ 244
R KP L + P + L + + PL
Sbjct: 70 DREKP---LDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLK---------------- 110
Query: 245 NRPALDPDTVQILSSLGLESMTTCL-VRHCPNAFG------------------------- 278
+ + V + ++ G + +H +
Sbjct: 111 -----EGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEIS 165
Query: 279 ---------VTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKM 329
+T SGD++ D + ++LLIHE T D ++ K
Sbjct: 166 RLVKEKGRDFVTEEYHKKVLTISGDSLALDP--EEIRGTELLIHECTFLDARDRRY--KN 221
Query: 330 HSTVSQAIRIGREMRAKFVLLTHFSQRYAK 359
H+ + + + + K V+L H S RY +
Sbjct: 222 HAAIDEVMESVKAAGVKKVILYHISTRYIR 251
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 105 bits (264), Expect = 3e-25
Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 279 VTMVTKSGHKITYSGDTMP--CDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQA 336
V G KI GD D V + +DLLIHEAT +D +A HST A
Sbjct: 236 VLKKPIVGRKICILGDCSGVVGDGGVKLCFEADLLIHEATLDDAQMDKAKEHGHSTPQMA 295
Query: 337 IRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSE----------------NVGIAFDNMRF 380
+ RAK ++LTHFSQRY + + ++ V +A D M
Sbjct: 296 ATFAKLCRAKRLVLTHFSQRYKPVALAREGETDGIAELKKQAESVLDLQEVTLAEDFMVI 355
Query: 381 PEKKKKKK 388
KK +
Sbjct: 356 SIPIKKAE 363
Score = 64.1 bits (156), Expect = 3e-11
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 17/102 (16%)
Query: 114 SGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLH 173
+ +P +G + +R G C L DCGEGT +QL++ +++ ++I+HLH
Sbjct: 10 AAYPSPTRGASAVVLRCEG--ECWLFDCGEGTQTQLMKSQLK-----AGRITKIFITHLH 62
Query: 174 ADHHLGLFSVIKAWS-------RVKPECKLTLLAPRQIITWL 208
DH GL ++ S +P + + P + ++
Sbjct: 63 GDHFFGLPGLLCTISLQSGSMVSKQP---IEIYGPVGLRDFI 101
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 59.3 bits (144), Expect = 5e-10
Identities = 39/254 (15%), Positives = 78/254 (30%), Gaps = 57/254 (22%)
Query: 134 DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPE 193
D L+D G + R ++H H DH GLF + R
Sbjct: 48 DAITLIDAG--LHDLADRW-------SPGSFQQFLLTHYHMDHVQGLFPL-----RWGVG 93
Query: 194 CKLTLLAPRQIITWLSVYAARFESVGHL-YRLVPLSLFNTKGLIEGTEQHGQNRPALDPD 252
+ + P + + + + P +F+ +GL
Sbjct: 94 DPIPVYGPPDEQGCD--DLFKHPGLLDFSHTVEPFVVFDLQGL----------------- 134
Query: 253 TVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDT--MPCDALVSI-GKNSD 309
+T + H FG + T ++ + DT +P L +
Sbjct: 135 -----------QVTPLPLNHSKLTFGYLLETAHS-RVAWLSDTAGLPEKTLKFLRNNQPQ 182
Query: 310 LLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQR--YAKLPRLNKDL 367
+++ + +H + H ++ + + + +R+ V+LTH S + + L
Sbjct: 183 VMVMDCSHPPRADAPRN---HCDLNTVLALNQVIRSPRVILTHISHQFDAWL---MENAL 236
Query: 368 SENVGIAFDNMRFP 381
+ FD M
Sbjct: 237 PSGFEVGFDGMEIG 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 1e-09
Identities = 90/495 (18%), Positives = 144/495 (29%), Gaps = 151/495 (30%)
Query: 1 MNSSS--PKVTECSSVTV-LDCPSEDYLD-SLLGESIFSQHQSCAMNE---DDKAA---- 49
M++ S P S+ L P+ + S L E F++ DD+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAE 59
Query: 50 LVAHF--------SPHHIMSHPR-----YKEFMSKFPSTTQ-HLV---LNESNECQGSTA 92
LV F P + + EF + + H + L + N+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 93 VHKIQC--KLNILDKEIFPMLSDSGFPLL---DKGK-QVLAIRGPG---PDTCI--LLDC 141
I+ I+ K F S+S L +G Q++AI G G D L D
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNS--ALFRAVGEGNAQLVAIFG-GQGNTDDYFEELRDL 176
Query: 142 GEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPE-------- 193
+ TY LV LS+L + L A+ I W P
Sbjct: 177 YQ-TYHVLVGDLIKFSAETLSELIR---TTLDAEKVFTQGLNILEWLE-NPSNTPDKDYL 231
Query: 194 ---------------------CKLTLLAPRQIITWLS--------VYAARFESVG----H 220
KL P ++ ++L + A +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 221 LYRLVPLS---LFNTKGLIEGTEQHGQNRP--ALDPDTVQILSSLGLESMTTCL-VRHCP 274
+ V + LF I G + + P +L P ++ + L + +
Sbjct: 292 FFVSVRKAITVLF----FI-GVRCY-EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 275 NAFGVTMVTKSGHKITYSGDTMPCDALVSIG-KNSDL----------LIHEATHEDELEK 323
V + + +P V I N L L K
Sbjct: 346 QEQ----VQD---YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT---LRK 395
Query: 324 EAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLP---------------RLNKDLS 368
A S + Q+ RI R K FS R+ LP +NKDL
Sbjct: 396 AKA---PSGLDQS-RIPFSER-KLK----FSNRF--LPVASPFHSHLLVPASDLINKDLV 444
Query: 369 ENVGIAFDN--MRFP 381
+N ++F+ ++ P
Sbjct: 445 KN-NVSFNAKDIQIP 458
Score = 37.3 bits (86), Expect = 0.012
Identities = 61/353 (17%), Positives = 99/353 (28%), Gaps = 129/353 (36%)
Query: 18 DCPSEDYLDS------LLGESIFSQHQSCAMNEDDKAALVAHFSPHHIMSHPRYKEFMSK 71
+ P +DYL S L+G Q +AH+ + E S
Sbjct: 224 NTPDKDYLLSIPISCPLIG---VIQ--------------LAHYVVTAKLLGFTPGELRSY 266
Query: 72 FPSTTQH---LVLNESNECQGSTAVHKIQCKLNILDKEIFPMLSDSGFPLLDKGKQVLAI 128
T H LV TAV +DS ++ + +
Sbjct: 267 LKGATGHSQGLV----------TAV--------------AIAETDSWESFFVSVRKAITV 302
Query: 129 ------RGPG--PDTC----ILLDC---GEGTYSQLVRLYGSAVDTLLSQLSAVYISHLH 173
R P+T IL D EG S ++ + + + ++ SHL
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHLP 361
Query: 174 ADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGH---LYRLVPLSLF 230
A + + S++ + ++ +S G LY L L+L
Sbjct: 362 AGKQVEI-SLVN--------------GAKNLV--VS---------GPPQSLYGLN-LTLR 394
Query: 231 NTKGLIEGTEQH----------GQNR----------PALDPDTVQILSSLGLESMTTCLV 270
K G +Q NR L P + I L + V
Sbjct: 395 KAKAP-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN-----V 448
Query: 271 RHCPNAFGVTMV--TKSGHKI-TYSGDTMP--CDALVSIGKNSDLLIH-EATH 317
+ V T G + SG D ++ + + +ATH
Sbjct: 449 SFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 30.4 bits (68), Expect = 1.6
Identities = 14/107 (13%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 257 LSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEAT 316
+ G S+ +V + P + + G +I + M + +V ++ + E
Sbjct: 1654 KDTYGF-SILD-IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 317 H----------EDELEKEA----ALKMHSTVSQAIRIGREMRAKFVL 349
+ L AL + + +A ++++K ++
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPAL---TLMEKAAF--EDLKSKGLI 1753
Score = 30.0 bits (67), Expect = 2.5
Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 31/151 (20%)
Query: 334 SQAIRIGREMRAKFVLLTHFSQRYAK--LPRLNKDLSENVG-----IAFDNMRFPEKKKK 386
SQ +G ++ + A+ R + + G I +N P
Sbjct: 1626 SQEQGMGMDLYKTS--------KAAQDVWNRADNHFKDTYGFSILDIVINN---PVNLTI 1674
Query: 387 KKKKKKKRKKKKKKKKKKVNNSIQISSRPE-ICREFDSKKISLA-NLPKLKLFY-----P 439
+K ++ ++ + + E I +E + S K L P
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 440 ALKAM-FAEYQDEIENRAIRRNLKQESTYLA 469
AL M A ++D +++ + L A
Sbjct: 1735 ALTLMEKAAFED-LKS----KGLIPADATFA 1760
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
structural genomics center for infectious disease; HET:
5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB:
3qh8_A* 3py6_A* 3py5_A*
Length = 293
Score = 57.4 bits (139), Expect = 2e-09
Identities = 49/264 (18%), Positives = 85/264 (32%), Gaps = 60/264 (22%)
Query: 130 GPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSR 189
G +T +++D G Q++ + + L A +H HADH G+ ++ +
Sbjct: 73 AEGNNTVVVIDTGPDFRMQMID-------SGVHMLDAAVYTHPHADHIHGIDD-LRTYVV 124
Query: 190 VKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPAL 249
+ VYA R L++T G T P L
Sbjct: 125 DNGR-------------LMDVYANRL---------TRNRLYDTFGYCFETPVGSSYPPIL 162
Query: 250 DPDTV------QILSSLGLESMTTCLVRHCPNAFGVTMVTKSG---HKITYSGD--TMPC 298
+ I + G H G G + Y D P
Sbjct: 163 SMHDIAPETPFSIEGAGGAIRFEPFSQVH-----GDIESL--GFRIGSVVYCTDVSAFPE 215
Query: 299 DALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQR-- 356
+L I K++D+LI A H ++ +A+ ++ K +LTH
Sbjct: 216 QSLQYI-KDADVLIIGALQYRPHPS------HFSLGEALEWIEKLSPKRAILTHMHVPLD 268
Query: 357 YAKLPRLNKDLSENVGIAFDNMRF 380
Y + ++ +V +D +RF
Sbjct: 269 YET---VMRETPHHVEPGYDGLRF 289
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 56.7 bits (136), Expect = 5e-09
Identities = 41/273 (15%), Positives = 84/273 (30%), Gaps = 31/273 (11%)
Query: 126 LAIRGPGPDTCILLDCGEGTYSQLVRL--YGSAVDTLLSQLSAVYISHLHADHHLGLFSV 183
+A+ G IL + +QL A + ++A+ + DH GL S
Sbjct: 44 IALSDDG-VHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLS- 101
Query: 184 IKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHG 243
++ C + + L+ F + H + + +G
Sbjct: 102 ------LREGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWNRIELEGSFVIDACPN 155
Query: 244 QNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMP-CDALV 302
L + S+ S N + T++G K+ Y+ + L+
Sbjct: 156 -----LKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLL 210
Query: 303 SIGKNSDLLIHEATHEDELEKEAALKM-----------HSTVSQAIRIGREMRAKFVLLT 351
++ +D L+ + T ++ E + + + + + +L
Sbjct: 211 AMMHGADCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLI 270
Query: 352 HFSQRYAKL----PRLNKDLSENVGIAFDNMRF 380
H + L P + L V +AFD M
Sbjct: 271 HINNTNPILDENSPERAEVLRRGVEVAFDGMSI 303
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 1e-04
Identities = 93/588 (15%), Positives = 171/588 (29%), Gaps = 192/588 (32%)
Query: 17 LDCPS-EDYLDSLLG----ESIFSQHQSCAMN-------EDDKAALVAHFSPHHIMSHPR 64
DC +D S+L + I + + + +V F +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RIN 90
Query: 65 YKEFMSKF------PSTTQHLVLNESNECQGST------------AVHKIQCKLNILDKE 106
YK MS PS + + + + K++ L L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 107 ----IFPMLSDSGFPLLDKGKQVLAIRGPGPDTC-------------------------I 137
I +L G GK +A+ D C
Sbjct: 151 KNVLIDGVL---GS-----GKTWVAL-----DVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 138 LLDCGEGTYSQLVRLYGSAVD----------TLLSQLSAVYISHLHADHHLGLFSV--IK 185
+L+ + Q+ + S D ++ ++L + S + + L L +V K
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 186 AWSRVKPECKLTLLAPR--QIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHG 243
AW+ CK LL R Q+ +LS S+ H ++ L
Sbjct: 258 AWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDH----------HSMTLTP------ 300
Query: 244 QNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVS 303
+ +L L+ L P + + P L
Sbjct: 301 -------DEVKSLLLKY-LDCRPQDL----PRE------VLTTN---------PR-RLSI 332
Query: 304 IGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRI--GREMRAKFVLLTHFSQRYAKLP 361
I + + D + K+ + + ++ + E R F L+ F A +P
Sbjct: 333 IAE---SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIP 388
Query: 362 -----RLNKDLSENVGIAFDNMRFPEKKKKK---KKKKKKRK----------KKKKKKKK 403
+ D+ ++ D M K K +K+ K+ K K + +
Sbjct: 389 TILLSLIWFDVIKS-----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 404 KVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPA--LK--------AMFAE-YQDE- 451
++ SI + I + FDS + L + + LK +F + D
Sbjct: 444 ALHRSI-VDHY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 452 -IENRAIRRN-------------LKQESTYLARYPSENDKEKPGSLDD 485
+E + IR + L+Q Y Y +ND + ++
Sbjct: 502 FLEQK-IRHDSTAWNASGSILNTLQQLKFYK-PYICDNDPKYERLVNA 547
Score = 41.0 bits (95), Expect = 9e-04
Identities = 45/291 (15%), Positives = 93/291 (31%), Gaps = 80/291 (27%)
Query: 14 VTVLDCPSEDYLDSLLGESIFSQHQSCAMNEDDKAALVAHF-------SPHHIMS-HPR- 64
+T D+L + I H S + D+ +L+ + P +++ +PR
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 65 ---YKEFMSKFPSTTQHLVLNESNECQGSTAVHKIQCKLNILDKE----------IFPML 111
E + +T + ++ I+ LN+L+ +FP
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLT-----TIIESSLNVLEPAEYRKMFDRLSVFP-- 382
Query: 112 SDSGFPLLDKGKQVLAI--RGPGPDTCI----------LLDCG--EGTYSQLVRLYGSAV 157
+ P +L++ + L++ E T S + +
Sbjct: 383 PSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----IPSIYL 433
Query: 158 DTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFES 217
+ + + LH S++ ++ K L+ P +L Y +
Sbjct: 434 ELKVKLENEYA---LHR-------SIVDHYNIPKTFDSDDLIPP-----YLDQYF--YSH 476
Query: 218 VG-HLYRLVP---LSLFNTKGL----IEGTEQH---GQNRPALDPDTVQIL 257
+G HL + ++LF L +E +H N +T+Q L
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 2e-04
Identities = 10/98 (10%), Positives = 33/98 (33%), Gaps = 29/98 (29%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPA 440
PE +K +++++KR ++ K + + ++ + L+ +
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD-----------------LEEWN-- 124
Query: 441 LKAMFAEYQDEIENRAIRRNLKQESTYLARYPSENDKE 478
+++E + N + + + D +
Sbjct: 125 -----QRQSEQVE-KNKINNRIADKAFYQ----QPDAD 152
Score = 30.1 bits (67), Expect = 1.3
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 16/86 (18%)
Query: 316 THEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAF 375
D L +E ++IR RE + K + A + ++ E
Sbjct: 75 AQADRLTQE---------PESIRKWREEQRK-----RLQELDAASKVMEQEWREKAKKDL 120
Query: 376 DNMRFPEKKKKKKKKKKKRKKKKKKK 401
+ + +++ ++ +K K + K
Sbjct: 121 EE--WNQRQSEQVEKNKINNRIADKA 144
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 41.2 bits (96), Expect = 4e-04
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 134 DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPE 193
+ I++D G+ + + +D + ++ V ++H H DH GL +++ VK
Sbjct: 42 NKEIVVDTGQS-ENFIKNCGLMGID--VGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIY 98
Query: 194 CKLTLLAPR 202
+L +
Sbjct: 99 THKEILNKK 107
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 40.3 bits (94), Expect = 0.001
Identities = 27/198 (13%), Positives = 59/198 (29%), Gaps = 25/198 (12%)
Query: 161 LSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGH 220
+ Q+ AV +H H DH + + + + P+ + + E
Sbjct: 107 IRQIDAVLATHDHNDH-IDVNVAAAVMQNCADDVPF--IGPKTCVDLWIGWGVPKE---- 159
Query: 221 LYRLVPLSLFNTKGLIEGT--EQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFG 278
R + + + + + +R AL ++ L +
Sbjct: 160 --RCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDR----AVNY- 212
Query: 279 VTMVTKSGHKITYSGDTMPCDALVSIGK--NSDLLIHEATHEDELEKEAALKMHSTVSQA 336
+ G + +SGD+ + G D+ + + T +
Sbjct: 213 --LFKTPGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITD-----KMTSADM 265
Query: 337 IRIGREMRAKFVLLTHFS 354
+R+G + AK V+ H
Sbjct: 266 LRMGEALNAKVVIPFHHD 283
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 36.7 bits (84), Expect = 0.011
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSK 424
P++ K KK K + KKKK+ K K +++ + E R FD K
Sbjct: 76 PKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVK 119
Score = 32.5 bits (73), Expect = 0.28
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPE 416
+ ++KK+ ++ K KK K + ++ +
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 30.9 bits (69), Expect = 0.74
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKI 426
+KK+ K+ K +K K ++KKKK + R + + ++ ++
Sbjct: 70 RQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 29.4 bits (65), Expect = 2.3
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 368 SENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQ 410
+ + P+ + + ++K++ K+ K K +
Sbjct: 47 TAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQE 89
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 36.6 bits (85), Expect = 0.012
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 22/104 (21%)
Query: 100 LNILDKEIFPMLSDSGFP-LLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVD 158
LN + L+ S L+ + +L+D G L+G +
Sbjct: 73 LNQPAPKTQSALAKSFQKAPLETSVTGYLVNTGS--KLVLVDTGAAG------LFGPTLG 124
Query: 159 TLLSQLSA----------VYISHLHADHHLGLFSVIKAWSRVKP 192
L + L A +YI+H+H DH GL + P
Sbjct: 125 RLAANLKAAGYQPEQVDEIYITHMHPDHVGGL---MVGEQLAFP 165
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural PSI-2, protein structure
initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Length = 379
Score = 36.5 bits (84), Expect = 0.015
Identities = 30/196 (15%), Positives = 57/196 (29%), Gaps = 20/196 (10%)
Query: 161 LSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGH 220
+ ++ AV SH HADH + + K + P+ + + E
Sbjct: 131 IKEIDAVLASHDHADH-IDVNVAAAVLQNCGEHVKF--IGPQACVDLWLGWGVPQE---- 183
Query: 221 LYRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVT 280
R + + + I + + D + L L A
Sbjct: 184 --RCIVAKVGDVL-EIGDVKIRV--LDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYL 238
Query: 281 MVTKSGHKITYSGDTMPCDALVSIGK--NSDLLIHEATHEDELEKEAALKMHSTVSQAIR 338
+ T G + +SGD+ + G D+ + E + T S +R
Sbjct: 239 IETS-GGSVYHSGDSHYSNYYAKHGNDYQIDVALLSY-----GENPRGVTDKMTSSDVLR 292
Query: 339 IGREMRAKFVLLTHFS 354
+ + V+ H
Sbjct: 293 AAESLDCQVVVPFHHD 308
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 36.2 bits (84), Expect = 0.015
Identities = 12/68 (17%), Positives = 17/68 (25%), Gaps = 17/68 (25%)
Query: 124 QVLAIRGPGPDTCILLDCGEGT-----YSQLVRLYGSAVDTLLSQLSA----------VY 168
+ I + L+D G + T+ L V
Sbjct: 36 YSILIEHA--EGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVV 93
Query: 169 ISHLHADH 176
SH H DH
Sbjct: 94 NSHFHFDH 101
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 35.6 bits (81), Expect = 0.030
Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 9/137 (6%)
Query: 354 SQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSI---- 409
++R + P L + F + + P + K K KK K+K+K+ +
Sbjct: 35 AERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKIYKFKKVKRKRKQIILQQHEINI 94
Query: 410 ---QISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIENRAIRRNLKQEST 466
+ + + + + + + L F L+ + E ++E EN + + +
Sbjct: 95 FLRDYQEKQQTFNKINRPEETQEDDKDLPNFERKLQQLEKELKNEDENFELD--INSKKD 152
Query: 467 YLARYPSENDKEKPGSL 483
A + S +D + ++
Sbjct: 153 KYALFSSSSDPSRRTNI 169
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling
protein; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 102
Score = 33.1 bits (75), Expect = 0.040
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLP 432
KK KK+++++K +KK K + I++ ++ SKK +L
Sbjct: 10 HSSGKKLKKQEKEEKDFRKKFKYDGEIRVLYSTKVTTSITSKKWGTRDLQ 59
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 34.3 bits (79), Expect = 0.061
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 116 FPLLDKGKQVLAIRGP---GPDTCILLDCGEGTYSQLVR----LYGSAVDTLLSQLSA-- 166
+ ++ + L +++D G G + +++ L+
Sbjct: 36 YNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYN 95
Query: 167 --------VYISHLHADHHLGL 180
V ++H+H DH GL
Sbjct: 96 LTPKDIDYVLMTHMHFDHAAGL 117
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 34.5 bits (79), Expect = 0.071
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 376 DNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEI 417
D R + + KKKKKKKKK +Q + P +
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQ-TDPPSV 118
Score = 31.8 bits (72), Expect = 0.47
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 361 PRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKK 403
+L + E+ D+ KKKK+KKKK+ K
Sbjct: 69 RQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
>3rpc_A Possible metal-dependent hydrolase; structural genomics,
PSI-biology, protein structure initiati midwest center
for structural genomics; 1.49A {Veillonella parvula}
Length = 264
Score = 33.9 bits (78), Expect = 0.084
Identities = 35/262 (13%), Positives = 70/262 (26%), Gaps = 64/262 (24%)
Query: 100 LNIL-DKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVD 158
L D P L+ +G R P D + ++D
Sbjct: 22 TTFLID----PFLAPKDTYPGFEGTFNYQQRMPMVDLPL------------------SMD 59
Query: 159 TLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESV 218
LLS ++AV ++H H D H ++ + + ++ + F V
Sbjct: 60 DLLSNVTAVVVTHTHLD-HWDDTAINSIPKSLP-----IFVQNTADKELIT--SQGFIDV 111
Query: 219 GHL---YRLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPN 275
+ ++L T G HG +P + +
Sbjct: 112 RIIFESLEFNGITLRKTGG------SHGTVEMYANPVLAPLAG----------------D 149
Query: 276 AFGVTMVTKSGHKITYSGDTMPCDALVSIGK--NSDL-LIHE-ATHEDELEKEAALKMHS 331
A GV + GDT+ + + ++ +++ E +
Sbjct: 150 AMGVIFEAADEPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDS----IIM 205
Query: 332 TVSQAIRIGREMRAKFVLLTHF 353
R+ ++ H
Sbjct: 206 GTKDIGRMVVRKPEAKIIAVHM 227
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.086
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 26/56 (46%)
Query: 398 KKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPALKAMFAEYQDEIE 453
+K+ KK+ S+++ + DS P L A+KA +E
Sbjct: 18 EKQALKKLQASLKLYA-D------DSA-------PAL-----AIKA-------TME 47
Score = 27.6 bits (60), Expect = 5.4
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 318 EDELEK-EAALKMH---STVSQAIR 338
+ L+K +A+LK++ S + AI+
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIK 43
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 34.4 bits (78), Expect = 0.087
Identities = 4/45 (8%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 133 PDTCILLDCG-EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
+ +L+D G + + + ++ ++ + +S +
Sbjct: 23 DNVTLLIDPGWNPSKVSYEQCI-KYWEKVIPEIDVIILSQPTIEC 66
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 34.0 bits (77), Expect = 0.098
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 1/111 (0%)
Query: 299 DALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIG-REMRAKFVLLTHFSQRY 357
+ V S + E++ H +S I + +KF+ L
Sbjct: 203 NVNVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASL 262
Query: 358 AKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNS 408
P LS+ A ++ K K KK + +K KV+ S
Sbjct: 263 PNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 33.7 bits (77), Expect = 0.098
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVK 191
PD +LLD G + + A L + +SH HAD H G + +K + K
Sbjct: 45 TPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHAD-HAGPVAELKRRTGAK 103
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 33.9 bits (77), Expect = 0.099
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVK 191
IL+D + A+ + A+ SH H DH G + ++ +
Sbjct: 66 DAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHA-GSLAELQKATGAP 123
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 33.2 bits (75), Expect = 0.14
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 137 ILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKPECKL 196
+L D G+ +A + V ISH H DH GL + ++ E
Sbjct: 40 VLFDTGKSD-----VFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEALD 94
Query: 197 TLLAPRQII 205
+ +
Sbjct: 95 QKYSGERYA 103
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 33.8 bits (78), Expect = 0.15
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 133 PDTCILLDCG--EGTYSQLVRL-YGSAVDTLLSQLSAVYISHLHADH 176
P++ +LLDCG Y + + L L AV I+H H DH
Sbjct: 201 PNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDH 247
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 33.2 bits (76), Expect = 0.15
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
IL+D GE + + A+ + + + ++H H DH
Sbjct: 40 GPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDH 83
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 31.5 bits (71), Expect = 0.16
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNNSI 409
K K+KK+K K K+K+KVNNS+
Sbjct: 15 PAKSGGGKQKKKKWSKGKQKEKVNNSV 41
Score = 30.0 bits (67), Expect = 0.55
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKV 405
P K K ++KKKK K K
Sbjct: 9 PPPSSKPAKSGGGKQKKKKWSKGKQ 33
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 32.0 bits (72), Expect = 0.16
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
KK K +K + KKKK+K+K + +I I
Sbjct: 9 AAKKAGKAQKNITKTDKKKKRKRKESYAIYI 39
Score = 30.4 bits (68), Expect = 0.44
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P+ K KK K +K K KK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKK 26
Score = 30.1 bits (67), Expect = 0.67
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
KK K +K K KKKK+K+
Sbjct: 8 KAAKKAGKAQKNITKTDKKKKRKR 31
Score = 30.1 bits (67), Expect = 0.69
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P K K KK + +K K K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDK 25
Score = 29.7 bits (66), Expect = 0.81
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
K KK K +K K KKKK+
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKR 29
Score = 29.3 bits (65), Expect = 1.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNS 408
+ KK K +K K KKKK+K S
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKRKRKES 34
Score = 28.9 bits (64), Expect = 1.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
K KK K +K K KKK
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKK 27
Score = 28.9 bits (64), Expect = 1.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
K KK K ++ K KKKK
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKK 28
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 31.5 bits (71), Expect = 0.17
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 357 YAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
Y + + VG + + E+K+K+ KK K K+ KKKK+
Sbjct: 59 YVAIKPKVSNPEIYVG---EVLYVDERKRKESPKKNKEKRMKKKKRLN 103
Score = 31.1 bits (70), Expect = 0.22
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
K+K+ KK K+++ KKKK+ +
Sbjct: 81 ERKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.1 bits (62), Expect = 2.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 384 KKKKKKKKKKRKKKKKKKKKKVNN 407
++K+K+ K+ K+K+ KKKK N
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLN 103
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 33.0 bits (75), Expect = 0.19
Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGL 180
+++D T Q ++ + ++ ++H H D G+
Sbjct: 82 DGGRVLVVDTA-WTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 129
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 32.8 bits (75), Expect = 0.19
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 132 GPDTCILLDCG---EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187
G L+D L + + + + ++H H DH+ GL +
Sbjct: 29 GAGEVALVDTALGTRAARGALELHL-AELGLCFQDVKTILLTHHHPDHY-GLSGFFEGL 85
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 32.9 bits (75), Expect = 0.20
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVK 191
P IL++ +++ + S + ISH H D H +IK ++ K
Sbjct: 32 TPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFD-HAAGSELIKQQTKAK 90
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 31.7 bits (71), Expect = 0.21
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P KK KK K +KK KK+KK
Sbjct: 9 PAPKKGSKKAVTKTQKKGDKKRKK 32
Score = 30.5 bits (68), Expect = 0.45
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
+ KK K +K+ KK+KK +K + SI +
Sbjct: 13 KGSKKAVTKTQKKGDKKRKKSRKESYSIYV 42
Score = 30.5 bits (68), Expect = 0.53
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNS 408
KK KK K +KK KK+KK S
Sbjct: 11 PKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 29.4 bits (65), Expect = 1.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNN 407
P+K KK K ++K KK+KK + +
Sbjct: 11 PKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 28.6 bits (63), Expect = 2.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
PE K KK KK K +KK
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKK 25
Score = 27.4 bits (60), Expect = 4.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
KK KK K +KK KK
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKK 29
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 32.5 bits (73), Expect = 0.21
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKI-SLANLPKLKLF 437
R +KK+K K K + K + + + ++ + ++ A +
Sbjct: 20 REEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYV 79
Query: 438 YPALKAMFA 446
P K +F
Sbjct: 80 SPEAKPLFV 88
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 32.8 bits (75), Expect = 0.22
Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 42/116 (36%)
Query: 99 KLNILDKEIFPMLSDSGFPLLDKGK---------------QVLAIRGPGPDTCILLDCGE 143
++++ K+++ + +G +LD + + IL+D G
Sbjct: 2 RISMTVKKLYFI--PAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETE--EGPILVDTGM 57
Query: 144 GT-------------YSQLVRLYGSAVDTLLSQLSA----------VYISHLHADH 176
+ + D +++ L + SHLH DH
Sbjct: 58 PESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDH 113
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 32.6 bits (74), Expect = 0.24
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVK 191
IL+D + +++ + + ++ + + +H H D H G F+ IK + +
Sbjct: 62 TSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLD-HTGGFAEIKKETGAQ 120
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, I metallo-beta-lactamase,
hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa}
SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A
1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 32.5 bits (74), Expect = 0.25
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGL 180
L+D T +L + ++ SH H+D G+
Sbjct: 40 VNAEAYLIDTP-FTAKDTEKLV-TWFVERGYKIKGSISSHFHSDSTGGI 86
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 32.1 bits (73), Expect = 0.30
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQ-LSAVYISHLHADHHLG 179
D +L+D V L + ++ + ++ +H H D G
Sbjct: 75 DADELLLIDTA-WGAKNTVALL-AEIEKQIGLPVTRSISTHFHDDRVGG 121
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 30.7 bits (69), Expect = 0.30
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNNSI 409
KK K+K KK K + +++
Sbjct: 14 AAALAGGKKSKKKWSKKSMKDRAQHAV 40
Score = 30.4 bits (68), Expect = 0.45
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P+++ K K KK KKK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKK 26
Score = 29.6 bits (66), Expect = 0.74
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P K++ K K KK KK
Sbjct: 2 PPKQQLSKAAKAAAALAGGKKSKK 25
Score = 28.4 bits (63), Expect = 1.7
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKV 405
+ K +K KKK KK +
Sbjct: 8 SKAAKAAAALAGGKKSKKKWSKKSM 32
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 32.1 bits (73), Expect = 0.31
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 22/67 (32%)
Query: 132 GPDTCILLDCGEGT------------YSQLVRLYGSAVDTLLSQLSA----------VYI 169
D +L D G G++ L +L V +
Sbjct: 50 CTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVL 109
Query: 170 SHLHADH 176
SHLH DH
Sbjct: 110 SHLHNDH 116
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 32.0 bits (73), Expect = 0.31
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 22/62 (35%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSA----------VYISHLHADH--HLG 179
D I++D G S++D L + S V +H+H DH +
Sbjct: 42 HKDRRIIIDPG----------NLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSV 91
Query: 180 LF 181
LF
Sbjct: 92 LF 93
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 32.7 bits (75), Expect = 0.31
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 133 PDTCILLDCG--EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
P++ IL+DCG G+ + L+Q+ AV ++H H DH
Sbjct: 205 PESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDH 250
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 31.1 bits (71), Expect = 0.33
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 378 MRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISS 413
M P K ++ + +K +K I + +
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSASARKIPKGVIHVQA 36
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 31.3 bits (71), Expect = 0.35
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSI 409
KK +K+ + +
Sbjct: 2 APKKTAPVQKEVISYGPPNVGANENVFGV 30
Score = 30.2 bits (68), Expect = 0.89
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISS 413
P+K +K+ + V I +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFGVCHIMA 35
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 32.1 bits (73), Expect = 0.37
Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 8/140 (5%)
Query: 105 KEIFPMLSDSGFPLLDKGKQVLA--IRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLS 162
+ P D LL QV +R G + L++ G ++LV S
Sbjct: 5 RLSAPGQLDDDLCLLG-DVQVPVFLLRL-GEASWALVEGGISRDAELVWADLCRWVADPS 62
Query: 163 QLSAVYISHLHADHHLGLFSVIKAWSRVK----PECKLTLLAPRQIITWLSVYAARFESV 218
Q+ I+H H DH L + V+ + + + +
Sbjct: 63 QVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAE 122
Query: 219 GHLYRLVPLSLFNTKGLIEG 238
L + + +G
Sbjct: 123 QRLPEACAWDALPVRAVADG 142
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 31.0 bits (70), Expect = 0.38
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNS 408
P+ KK K ++ K K K +
Sbjct: 3 PKAAVKKADGKTQQALKVAKAVKSGSIK 30
Score = 30.2 bits (68), Expect = 0.73
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 378 MRFPEKKKKKKKKKKKRKKKKKKKKKKVNN 407
M KK K ++ K K K
Sbjct: 1 MAPKAAVKKADGKTQQALKVAKAVKSGSIK 30
Score = 29.8 bits (67), Expect = 1.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
+ ++ K K + K+K KK+ S+
Sbjct: 12 GKTQQALKVAKAVKSGSIKRKSKKIRTSVTF 42
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 30.4 bits (69), Expect = 0.38
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 375 FDNMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+ K+ +KR+ KK K +
Sbjct: 82 VVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 27.3 bits (61), Expect = 4.3
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 378 MRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+ + K+ +K++ KK
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKS 106
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 32.2 bits (74), Expect = 0.40
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 133 PDTCILLDCG--EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
I+LDCG G Y +D +++ + ISH H DH
Sbjct: 33 KGRKIMLDCGIHPGLEGMDALPYIDLID--PAEIDLLLISHFHLDH 76
Score = 28.0 bits (63), Expect = 8.8
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 286 GHKITYSGDT-MPCDALV----SIGKNSDLLIHEAT-----HEDELEKEAALK--MHSTV 333
G K+ Y+GD D + D+LI E+T HE E+EA +H V
Sbjct: 171 GVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIV 230
Query: 334 SQ 335
++
Sbjct: 231 NR 232
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 32.1 bits (74), Expect = 0.47
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 133 PDTCILLDCG--EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
+LLDCG +G + D ++ AV ++H H DH
Sbjct: 22 GGRRVLLDCGMFQG-KEEARNHAPFGFD--PKEVDAVLLTHAHLDH 64
Score = 29.8 bits (68), Expect = 2.0
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 286 GHKITYSGDT-MPCDALV---SIGKNSDLLIHEAT-----HEDELEKEAALK--MHSTVS 334
G + YSGD ++ S+ +DL++ E T H E + T+S
Sbjct: 154 GRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLS 213
Query: 335 Q 335
Q
Sbjct: 214 Q 214
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 31.6 bits (71), Expect = 0.48
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 352 HFSQRYAKLPRLNKDLSENVGIAFDNMR-FPEKKKKKKKKKKKRKKKKKK-----KKKKV 405
FSQ Y K + E A +R P +KK KK+ KK++ + K KK +V
Sbjct: 222 QFSQ-YIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRV 280
Query: 406 NNSI 409
Sbjct: 281 AQKK 284
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.6 bits (71), Expect = 0.49
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 352 HFSQRYAKLPRLNKDLSENVGIAFDNMR-FPEKKKKKKKKKKKRKKKKKKK 401
HFS+ Y K + +R P K KK+ K+ KK
Sbjct: 222 HFSE-YLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKK 271
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 31.7 bits (71), Expect = 0.55
Identities = 10/74 (13%), Positives = 22/74 (29%)
Query: 357 YAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPE 416
AK+ + + A +K K KK + K +I + + +
Sbjct: 336 AAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQED 395
Query: 417 ICREFDSKKISLAN 430
++I +
Sbjct: 396 ADFIAQGQEIKEGD 409
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 31.3 bits (70), Expect = 0.58
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
R + +K K +++K + K++K +
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAE 40
Score = 30.5 bits (68), Expect = 1.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKKV 405
EK +K K +++K + K++K
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAE 40
Score = 30.5 bits (68), Expect = 1.1
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
K +++K + K++K + K
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISK 44
Score = 29.4 bits (65), Expect = 2.4
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
++K + K+++ + K +K
Sbjct: 26 QRKASSAQMKQRKAEWISKAQKYAAEYEAA 55
Score = 29.0 bits (64), Expect = 3.1
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 381 PEKKKKKKK-----KKKKRKKKKKKKKKKVNNSIQISSRPE 416
PE +KK +K K +++K + + S+ +
Sbjct: 6 PENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQ 46
Score = 28.2 bits (62), Expect = 5.9
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 374 AFDNMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+ +R + +++K + +++K + K
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKA 45
Score = 27.4 bits (60), Expect = 9.6
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
E++K + K+RK + K +K
Sbjct: 25 EQRKASSAQMKQRKAEWISKAQK 47
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 31.4 bits (71), Expect = 0.60
Identities = 10/111 (9%), Positives = 33/111 (29%), Gaps = 21/111 (18%)
Query: 364 NKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKV-------NNSIQIS---- 412
+ ++++ + ++ K K+K+ +K I +
Sbjct: 30 AEKFADDLYEKGVLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQFGINLHMYSS 89
Query: 413 -SRPEICR---EFDSKKISLANLPKLKLFYPALKAM------FAEYQDEIE 453
S ++ + D + ++ + ++ +A Y + E
Sbjct: 90 LSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWE 140
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 30.5 bits (68), Expect = 0.62
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNNSI 409
K + KK K+K K K K KVN+++
Sbjct: 17 AKAAQAKKGGKKKWTKGKAKDKVNHAV 43
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 30.9 bits (70), Expect = 0.71
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGL 180
+L D Q L + + AV+ +H H D L
Sbjct: 38 TKKGVVLFDVP-WEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDL 85
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 30.9 bits (69), Expect = 0.71
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
+ ++ ++ RK K+K+
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAI 43
Score = 30.2 bits (67), Expect = 1.1
Identities = 4/27 (14%), Positives = 14/27 (51%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKKV 405
+ +K ++ ++ +K K+K+ +
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAI 43
Score = 30.2 bits (67), Expect = 1.2
Identities = 3/23 (13%), Positives = 11/23 (47%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
+ ++ +K K+K+ ++
Sbjct: 25 QVAAERAARKAANKEKRAIILER 47
Score = 29.0 bits (64), Expect = 3.0
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
E+ ++ +K K+K+ +
Sbjct: 24 EQVAAERAARKAANKEKRAIILE 46
Score = 28.6 bits (63), Expect = 3.8
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQ 410
E+ +K K+KR ++
Sbjct: 29 ERAARKAANKEKRAIILERNAAYQKEYET 57
Score = 28.2 bits (62), Expect = 5.8
Identities = 2/22 (9%), Positives = 10/22 (45%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKK 404
++ ++ ++ K+K+
Sbjct: 23 AEQVAAERAARKAANKEKRAII 44
Score = 27.9 bits (61), Expect = 6.5
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 5/41 (12%)
Query: 381 PEKKKKKKK-----KKKKRKKKKKKKKKKVNNSIQISSRPE 416
PE + KK K ++ ++ +K I R
Sbjct: 9 PESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNA 49
Score = 27.9 bits (61), Expect = 8.0
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 374 AFDNMRFPEKKKKKKKKKKKRKKKKKKKKK 403
A ++ +K ++K+ ++
Sbjct: 18 AQQKTAEQVAAERAARKAANKEKRAIILER 47
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 31.2 bits (70), Expect = 0.73
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 352 HFSQRYAKLPRLN-KDLSENVGIAFDNMRF-PEKKKKKKKKKKKRKKKKKKKKKK 404
FS+ L + + +R PE+ K KK K ++ KK K
Sbjct: 227 QFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTK 281
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 31.4 bits (71), Expect = 0.74
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPAL 441
+ K+ +++ + KK+ K P+ R S + A+ PK + P
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTK-------GRGPDEVRGEGSSSPAKAHAPKAQPLTPEQ 681
Query: 442 KAMFAEYQDEIENRAIRRNLKQESTYLARYPSENDKEKPGSL 483
A F + R + ++ LA + +
Sbjct: 682 DAEFTRLLGLGASEGDARTIARDPALLAFVGGAAPGDTFAQV 723
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 30.9 bits (70), Expect = 0.76
Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGL 180
+++DC + ++ +H H D GL
Sbjct: 34 TDKGVVVIDCP-WGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGL 81
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.9 bits (70), Expect = 0.83
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 376 DNMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+N + E ++K ++ K ++K +K++ +K
Sbjct: 311 ENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 28.9 bits (65), Expect = 3.4
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKK 403
E+K ++ K K++ +K++ +K+
Sbjct: 319 EEKMRRAKLAKEKAEKERLEKQ 340
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 30.7 bits (69), Expect = 0.87
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 350 LTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSI 409
+ F Y+ L R N D + KK+ KK K K+ K + ++K+ +
Sbjct: 95 VNKFQMAYSNLLRAN----------MDGL-----KKRDKKNKSKKSKPAQGGEQKLISEE 139
Query: 410 QISS 413
S+
Sbjct: 140 DDSA 143
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRP 415
FP + K K +++ R + + +KKV + RP
Sbjct: 33 SFPIIEAKAKTRREDRTARHVRIRKKVEGT---PERP 66
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.4 bits (68), Expect = 1.1
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 352 HFSQRYAKLPRLNKDLSENVGIAFDNMR---FPEKKKKKKKKKKKRKKKKKKKKKK 404
F Y L + A + +R + +KK K++ + KK ++ K
Sbjct: 222 LFKG-YLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTK 276
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 29.7 bits (65), Expect = 1.2
Identities = 4/39 (10%), Positives = 9/39 (23%)
Query: 362 RLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKK 400
R+ EN+ + K + +
Sbjct: 98 RIRAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 30.1 bits (68), Expect = 1.2
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQ-LSAVYISHLHADHHLGL 180
LLD +Q L + V L ++ +H H D GL
Sbjct: 44 NNHQAALLDTP-INDAQTEMLV-NWVTDSLHAKVTTFIPNHWHGDCIGGL 91
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 30.6 bits (69), Expect = 1.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKK 403
+ PE K KKK K K K+ K
Sbjct: 355 KEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 30.3 bits (68), Expect = 1.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
R + K KKK K K K+ K
Sbjct: 354 RKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.5 bits (64), Expect = 1.3
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
K K KK+ ++R +K K K +
Sbjct: 3 TKNAKPKKEAQRRPSRKAKVKATLGEFDLR 32
Score = 27.7 bits (62), Expect = 2.1
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 378 MRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSI 409
M K KK+ +++ +K K K +
Sbjct: 1 MSTKNAKPKKEAQRRPSRKAKVKATLGEFDLR 32
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 30.2 bits (67), Expect = 1.4
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPE 416
++ +KK K RK ++K +K + + +
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMY 87
Score = 30.2 bits (67), Expect = 1.5
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFYPAL 441
K+ +KK K +K ++K + R E + +A
Sbjct: 52 VKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMAR--MARKAGNFYVPAEP 109
Query: 442 KAMFA 446
K F
Sbjct: 110 KLAFV 114
Score = 29.8 bits (66), Expect = 1.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
F E K K+ +KK K +K ++K
Sbjct: 46 NFAELKVKRLRKKFALKTLRKARRKL 71
Score = 29.5 bits (65), Expect = 2.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKKV 405
R + K K+ +KK K +K ++K+
Sbjct: 45 RNFAELKVKRLRKKFALKTLRKARRKL 71
Score = 28.3 bits (62), Expect = 4.7
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 381 PEKKKKKKK-----KKKKRKKKKKKKKKKVNNSIQISSRPE 416
PE KKK++ K K+ +KK K + I + +
Sbjct: 37 PETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAK 77
Score = 28.3 bits (62), Expect = 5.1
Identities = 12/60 (20%), Positives = 20/60 (33%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPKLKLFY 438
R +K K +K +RK +K K Q+ K + + KL +
Sbjct: 54 RLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAF 113
Score = 27.5 bits (60), Expect = 8.9
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 374 AFDNMRFPEKKKKKKKKKKKRKKKKKKKKK 403
F ++ +KK K ++ ++K +K
Sbjct: 46 NFAELKVKRLRKKFALKTLRKARRKLIYEK 75
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 28.8 bits (64), Expect = 1.5
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 389 KKKKKRKKKKKKKKKKVNNSIQISSRPEICREF 421
K K K K +++ K + E +E+
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQEY 35
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 29.7 bits (67), Expect = 1.8
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQ-LSAVYISHLHADHHLG 179
+L+D L V+ + ++ V I+H HAD G
Sbjct: 48 TSKGLVLVDSS-WDDKLTKELI-EMVEKKFQKRVTDVIITHAHADRIGG 94
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 28.2 bits (62), Expect = 2.2
Identities = 3/24 (12%), Positives = 13/24 (54%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
+K+++ +K +++ + K +
Sbjct: 79 DTNLQKQRELQKANQEQYAEGKMR 102
Score = 26.7 bits (58), Expect = 7.3
Identities = 3/27 (11%), Positives = 16/27 (59%)
Query: 378 MRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+++ + +K+++ +K +++ + K
Sbjct: 75 LKYVDTNLQKQRELQKANQEQYAEGKM 101
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 29.6 bits (67), Expect = 2.4
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 35/162 (21%)
Query: 163 QLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLY 222
Q +AV++SH H DH + + + P +Y + + L
Sbjct: 84 QHTAVFLSHAHLDH-------SRMINYLDPAVP--------------LYTLKE-TKMILN 121
Query: 223 RLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRH-CPNAFGVTM 281
L F E + D +++ + +E + H A + +
Sbjct: 122 SLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKV-GEISVEIVPVD---HDAYGASALLI 177
Query: 282 VTKSGHKITYSGD----TMPCD---ALVSIGKNSDLLIHEAT 316
T ITY+GD + A K+++LL+ E
Sbjct: 178 RTPDH-FITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGV 218
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 29.5 bits (65), Expect = 2.5
Identities = 14/73 (19%), Positives = 23/73 (31%)
Query: 355 QRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSR 414
+R L + A E+K KK +++K KK KK +
Sbjct: 336 RRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Query: 415 PEICREFDSKKIS 427
+ KK +
Sbjct: 396 AATKKPAADKKPA 408
Score = 28.7 bits (63), Expect = 4.5
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 7/99 (7%)
Query: 306 KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNK 365
KN +++ + + + L+ R +A L ++ + +
Sbjct: 320 KNLRIMLKLNPYAKTMRRNTILR-----QAKNHKLRMDKAAAALEAKSEEKGVPGKKPRR 374
Query: 366 DLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+ KK KK KK +KK
Sbjct: 375 KKGKKT--VGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase,
homodimer, domain swapped, composite active site,
hydrolase; 1.90A {Enterobacteria phage T7} SCOP:
c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A
Length = 138
Score = 28.4 bits (63), Expect = 2.5
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 337 IRIGREMRAKFVLLTHFSQRYAKLPRLNK----DLSENVGIAFDNMRFPEKKKKKKKKKK 392
+ RE + + FS KL + + + E GI F + P + K+ KK+
Sbjct: 67 HLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIPAEWIKEPKKEV 126
Query: 393 KRKKKKKKKKKK 404
+ K+K KK
Sbjct: 127 PFDRLKRKGGKK 138
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 28.7 bits (64), Expect = 2.6
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRP 415
+ K K K KK K K ++ RP
Sbjct: 7 TQAVNKAKNTAKVAKKGSSITKHKTYTGVRF-FRP 40
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 29.5 bits (66), Expect = 2.7
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKV 405
+ K K+ +K V
Sbjct: 12 NRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 3.2
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 377 NMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
+ P+ + + K K+ +K
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKV 33
Score = 27.6 bits (61), Expect = 9.2
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
+ + + + K+ +KV+N I I
Sbjct: 9 EPQNRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 27.6 bits (61), Expect = 9.3
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 377 NMRFPEKKKKKKKKKKKRKKKKKKKK 402
R + K K+ +K
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNV 36
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 28.1 bits (62), Expect = 2.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 376 DNMRFPEKKKKKKKKKKKRKKKKKK 400
+ +R EK++ K KR ++ +
Sbjct: 88 NYIRQEEKERINAKNILKRNNRRCQ 112
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.5 bits (66), Expect = 2.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDS 423
EK ++ K K+K +K++ +K++K I +++ + DS
Sbjct: 391 EKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDS 432
Score = 28.7 bits (64), Expect = 4.6
Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 375 FDNMRFPEKKKKKKKKKKKRKKKKKKKKKKV---------NNSIQIS----SRPEICR-- 419
F K KK ++ +++K +KKK K++ N SI + EI
Sbjct: 50 FSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVI 109
Query: 420 -EFDSKKISLANLPKLKLFYPALK--AMFAEYQDEIEN 454
E + ++ + + L P + M +E ++E ++
Sbjct: 110 LEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDD 147
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 29.6 bits (67), Expect = 3.0
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 11 CSSVTVLDC--PSEDYLDSLLGESIF 34
CS +TV+ PSED LDSL+G+++F
Sbjct: 777 CSEITVVTFRGPSEDALDSLVGQALF 802
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.5 bits (66), Expect = 3.0
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDS 423
KKK++++++ + + + K+++++ + E EFD
Sbjct: 399 RKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 29.0 bits (65), Expect = 3.7
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
G +++D G A + L +L + ++HLH DH
Sbjct: 27 GEKLTVMIDAGVSN--------SIADFSFLDKLDYIVLTHLHIDH 63
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 28.7 bits (63), Expect = 3.7
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
RF E + +K+K + K+ ++++
Sbjct: 131 RFFENTQDVRKRKTREAAKRNRRRRP 156
Score = 28.3 bits (62), Expect = 4.4
Identities = 4/22 (18%), Positives = 15/22 (68%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKK 403
+ +K+K ++ KR ++++ + +
Sbjct: 138 DVRKRKTREAAKRNRRRRPQAR 159
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 27.4 bits (60), Expect = 3.8
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 385 KKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLA 429
+KK++K+K++K+++ KKK K+ IQ+ + C + K L+
Sbjct: 1 EKKEQKEKEKKEQEIKKKFKLTGPIQVIHLAKACCDVKGGKNELS 45
>4ala_C Envelope protein, E glycoprotein; immune system, antibody,
neutralisation; HET: GOL; 1.84A {Dengue virus 3}
Length = 101
Score = 27.6 bits (61), Expect = 3.9
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 273 CPNAFGVT-MVTKSGH-----KITYSGDTMPCDALVSIGKNSDL 310
C N F + V+++ H K+ Y G+ PC S
Sbjct: 8 CLNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGK 51
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 28.1 bits (62), Expect = 4.0
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 374 AFDNMRFPEKKKKKKKKKKKRKKKKKKKKK 403
+ +R + + + K++ K
Sbjct: 11 SARKLRVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 28.1 bits (62), Expect = 4.0
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVN 406
++ + + KK+ K +
Sbjct: 18 HRRNNRWAENNYKKRLLGTAFKSS 41
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 28.6 bits (64), Expect = 4.1
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYI-SHLHADHHLG 179
D +++ + + V + V I +H H D G
Sbjct: 37 MLDGTVVIVSS-PFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGG 84
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 28.5 bits (64), Expect = 4.2
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQ-LSAVYISHLHADHHLG 179
G ++ T L+ + + + + V ++ H D G
Sbjct: 30 GAKGVTVVGAT-WTPDTARELH-KLIKRVSRKPVLEVINTNYHTDRAGG 76
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 29.0 bits (66), Expect = 4.2
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 21/77 (27%)
Query: 6 PKVTECSSVTVLDCPSEDYLDSLLGESIFSQHQSCAM-----NEDDKAALVAHFSPHHIM 60
P+V + V + D GE +SCA E L H I
Sbjct: 462 PEVMHAALVAI---V-----DEQFGE------KSCAFIVSRNPELKAVVLRRHLMELGIA 507
Query: 61 SH--PRYKEFMSKFPST 75
+ P + + P T
Sbjct: 508 QYKLPDQIKLIESLPLT 524
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 29.0 bits (64), Expect = 4.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
+ K K K KK KKKK KK
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKK 23
Score = 28.2 bits (62), Expect = 6.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVN 406
K K K K KK + KKKK K
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKE 24
Score = 28.2 bits (62), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKK 403
P+ K K KK + KKKK KK+
Sbjct: 2 PKNKDKDKKVPEPDNKKKKPKKE 24
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.0 bits (64), Expect = 4.3
Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 318 EDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTH-FSQRYAKLPRLNKDLSENVGIAFD 376
E E+E+ +K+ V + E++ + + ++ +L + +
Sbjct: 335 EMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEK----- 389
Query: 377 NMRFPEKKKKKKKKKKKRKKKKKKKKKKV 405
+ +++ +++ R +K KKK K+
Sbjct: 390 -ANWEAQQRILEQQNSSRTLEKNKKKGKI 417
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 28.8 bits (65), Expect = 4.6
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 133 PDTCILLDCG------EGTYSQLVRLYGSAVDTL--LSQLSAVYISHLHADH 176
++ +L+D G Y + L A+ I+H H DH
Sbjct: 210 DESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDH 261
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 28.0 bits (62), Expect = 4.7
Identities = 9/59 (15%), Positives = 20/59 (33%)
Query: 347 FVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKV 405
T F +Y ++ + + F + + +K K R+ K + K+
Sbjct: 47 HKTFTDFVAQYKRVYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKI 105
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 28.3 bits (62), Expect = 5.1
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 377 NMRFPEKKKKKKKKKKKRKKKKKKK 401
N KK KK+ +K+
Sbjct: 6 NPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 27.5 bits (60), Expect = 8.6
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 387 KKKKKKKRKKKKKKKKKKVN 406
K K KK KK+ ++
Sbjct: 5 KNPGLKAGGGKKGAKKRTID 24
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 27.7 bits (61), Expect = 5.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
E ++ K++ K+ K +KK KK
Sbjct: 106 AAREAALREIKERIKKTKDEKKAKKA 131
Score = 26.9 bits (59), Expect = 9.2
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVN 406
+ ++ K++ +K K +KK KK
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAE 132
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 28.1 bits (62), Expect = 5.4
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 348 VLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNN 407
V L +Q Y DL+ F++ F +K +K K + + +++KKK
Sbjct: 85 VPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAELTEEQKKK--- 141
Query: 408 SIQISSRPEICREFDSKKIS---LANLPKLKLFYPALKAMFA 446
+ + R+ D + + LA + K++ L + F
Sbjct: 142 ----ETERKNARKQDQQAVDTPLLAAVKKVEFLKNYLASKFT 179
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.1 bits (63), Expect = 5.5
Identities = 7/34 (20%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 369 ENVGIAFDN-MRFPEKKKKKKKKKKKRKKKKKKK 401
+NV FD ++ + ++K+ ++RK ++
Sbjct: 165 QNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSG 198
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell
division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
PDB: 3gu0_A
Length = 433
Score = 28.4 bits (64), Expect = 5.5
Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 359 KLPRLNKDLSENVGIAFDNM-RFPEKKKKKKKKKKKRKKKKKKKKKKV-----NNSIQIS 412
LP + +L+++V F+ + + E KK+ K+ + K+ +++ + I+I
Sbjct: 229 TLPEIGDELAKSVNNEFETLEQLKESLKKEGKEIYDVEMKESMREQLLEKLPEIVEIEI- 287
Query: 413 SRPE--ICREFDSKKISLAN---LPKLKLFYPALKAMFAEYQDEIENRAIRRNL 461
+ + + L ++ Y + + E ++ I + I+R+
Sbjct: 288 --SDRTLEILVNEAINRLKREGRYEQIVSSYESEEKFREELKERILDD-IKRDR 338
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 28.0 bits (62), Expect = 5.6
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 366 DLSENVGIAFDNM--RFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREF 421
DLS +VG + + EK++ + K +K K+ +KK + + + + +F
Sbjct: 139 DLSASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQF 196
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 27.8 bits (61), Expect = 5.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
E+K K K+KKK +K +K +K
Sbjct: 103 ANREEKLKANKEKKKAEKAARKAEKA 128
Score = 27.0 bits (59), Expect = 9.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPE 416
K K+KKK +K +K +K K S + S +
Sbjct: 110 KANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQA 143
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 28.7 bits (63), Expect = 5.8
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 359 KLPRLNKDLSENVGIAFDNMR--FPEKKKKKKKKKKKRKKKKKKKKKK 404
+ +++ I ++ FP + KKK + ++ + +
Sbjct: 514 NMLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDG 561
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L
1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M*
1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Length = 114
Score = 27.2 bits (61), Expect = 6.0
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 387 KKKKKKKRKKKKKKKKKKVNNSIQISSRP 415
+RK + ++K + + S R
Sbjct: 2 ATATTIRRKLRTRRKVRTTTAA---SGRL 27
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 27.6 bits (61), Expect = 6.2
Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 296 MPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQA-----IRIGREMRAKFVLL 350
+P + +G L H T K + + ++++ +I R + K +
Sbjct: 62 LPSSTIQVLGAEKALFRHLRTGAKPP-KHGVIYQYPAINRSPWWQRGKIARALAGKLAIA 120
Query: 351 THFSQRYAKLPRLNKDLSENVGIAF-----DNMRFPEKKKKKKKKKKKRKKKKKKKKKK 404
R++ E + ++ ++K + K++K ++K +K K+
Sbjct: 121 A----------RVDYFSGEYIAEELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 28.3 bits (62), Expect = 6.3
Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 94 HKIQCK-LNILDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRL 152
+ CK +I L P+ IR G C D G +RL
Sbjct: 395 SSLNCKSFKWFMTKIAWDLPKFYPPVEPPAAAWGEIRNVGTGLC--ADTKHGALGSPLRL 452
Query: 153 YG 154
G
Sbjct: 453 EG 454
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 26.7 bits (58), Expect = 6.3
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 381 PEKKKKKKKKKKKRKKKKKKK 401
+ K+ ++ K K++K++K
Sbjct: 70 SKDCKEIANQRSKSKRQKRRK 90
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 27.9 bits (62), Expect = 6.4
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 15/80 (18%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKP 192
P+ IL+D L L S V+I ++DH +++ +
Sbjct: 32 PEGNILIDPV--------ALSNHDWKHLESLGGVVWIVLTNSDH-------VRSAKEIAD 76
Query: 193 ECKLTLLAPRQIITWLSVYA 212
+ + P +Y
Sbjct: 77 QTYTKIAGPVAEKENFPIYC 96
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 28.3 bits (62), Expect = 6.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKV 405
K +K+K KR K ++ KV
Sbjct: 351 RIKARKEKLDSKRTKLSPEEAAKV 374
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 27.6 bits (61), Expect = 6.7
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKV 405
EK++ K +++ +KKK +KK+
Sbjct: 152 EKEQIVPKPEEEVAQKKKISQKKL 175
Score = 27.2 bits (60), Expect = 9.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P+ +++ +KKK +KK KK+K
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKLM 181
Score = 27.2 bits (60), Expect = 9.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
PE++ +KKK ++K KK+K +
Sbjct: 160 PEEEVAQKKKISQKKLKKQKLMAR 183
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA
recognition, chromatin, DNA binding protein; NMR
{Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A
1lwm_A
Length = 93
Score = 26.5 bits (59), Expect = 6.9
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKK 404
++ KK+ RKKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 7.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNN 407
K+KK +K+ K+ +KK+K K + ++
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for
structural genomics, JCSG; 2.30A {Parabacteroides
distasonis atcc 8503}
Length = 235
Score = 27.6 bits (62), Expect = 7.5
Identities = 29/199 (14%), Positives = 52/199 (26%), Gaps = 67/199 (33%)
Query: 166 AVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLV 225
+ I+H H DH L ++ ++A L ++ +
Sbjct: 68 IILITHEHGDH-LDPKAIQAVEKSDTE-----IIANENSQKKLG-KGKVLKNGDTDTSIS 120
Query: 226 PLSLFNTKGLIEGTE-QHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTK 284
+ IE + RH N + ++T
Sbjct: 121 YMK-------IEAVPAYNTTPGRDKYHP------------------RHRDNGY---ILTF 152
Query: 285 SGHKITYSGDT-----M----PCD-ALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVS 334
G ++ +GDT M D A + + + TVS
Sbjct: 153 DGLRVYIAGDTEDIPEMKDLKDIDIAFLPVNQPY---------------------TMTVS 191
Query: 335 QAIRIGREMRAKFVLLTHF 353
QA + R K + H+
Sbjct: 192 QAAKAARMFSPKILYPYHY 210
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 27.6 bits (62), Expect = 7.9
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
Query: 368 SENVGIAFDNM------RFPEKKKKKKKKKKKRKKKKKKKKK 403
NV F ++ R E K+K KKK++ K+ +++
Sbjct: 161 RANVDKVFFDLMREIRARKMEDSKEKNGKKKRKSLAKRIRER 202
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 27.5 bits (62), Expect = 8.5
Identities = 4/26 (15%), Positives = 11/26 (42%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
F E + + + +K + K+ +
Sbjct: 166 AFLEANRAELVRFQKEARALLKELSQ 191
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.2 bits (60), Expect = 8.6
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKV 405
+ +KK + R++ + +K++
Sbjct: 158 AKAAEKKVVRLTSRQRGRIAAQKRI 182
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 27.2 bits (61), Expect = 8.8
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISL 428
+K +K+ +KR +K ++ I + + K I+L
Sbjct: 27 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIAL 73
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.1 bits (59), Expect = 9.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKKKKKK 404
EK ++ K+KK +KK+ +K
Sbjct: 105 AEAEKAVRELKQKKANDIEKKRADRK 130
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 26.9 bits (59), Expect = 9.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 382 EKKKKKKKKKKKRKKKKKK----KKKKVNNS 408
K +K +K+ K+RK + KK KK K ++
Sbjct: 104 TKVEKSRKQMKERKNRAKKIRGVKKTKAGDA 134
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 27.3 bits (60), Expect = 9.8
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQI 411
+KKK+ + RK+ +K +KK++ ++
Sbjct: 166 IHYRKKKQLMRLRKQAEKNVEKKIDKYTEV 195
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 27.8 bits (62), Expect = 9.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQ 410
E KK+KK+ + KKK + + N +Q
Sbjct: 479 EPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 27.2 bits (60), Expect = 9.9
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 375 FDNMR--FPEKKKKKKKKKKKRKKKKKKKKKK 404
F M F +K++KK+ + KK+ + +++K
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQIRLEREK 125
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 27.2 bits (60), Expect = 10.0
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 385 KKKKKKKKKRKKKKKKKKKKVNNSIQI 411
++K+ K R K +K ++K+ ++I
Sbjct: 174 DRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,116,992
Number of extensions: 422590
Number of successful extensions: 4122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3303
Number of HSP's successfully gapped: 325
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.9 bits)