RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16250
(485 letters)
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 112 bits (281), Expect = 1e-28
Identities = 67/299 (22%), Positives = 109/299 (36%), Gaps = 36/299 (12%)
Query: 114 SGFPLLDKGKQVLAIR-GPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHL 172
+G P + +A++ + L DCGE T Q++ ++ ++I+H+
Sbjct: 10 AGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIK-----PRKIEKIFITHM 64
Query: 173 HADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITW----LSVYAARFESVGHLYRLVPLS 228
H DH GL ++ + S E +LT+ P+ I + L+V + +
Sbjct: 65 HGDHVYGLPGLLGSRSFQGGEDELTVYGPKGIKAFIETSLAVTKTHLTYPLAIQEIEEGI 124
Query: 229 LFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLES---------------------MTT 267
+F I A + L++ T
Sbjct: 125 VFEDDQFIVTAVSVIHGVEAFGYRVQEKDVPGSLKADVLKEMNIPPGPVYQKIKKGETVT 184
Query: 268 CLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAAL 327
N K G + +SGDT D L + ++ D+++HEAT E K A
Sbjct: 185 LEDGRIINGNDFLEPPKKGRSVVFSGDTRVSDKLKELARDCDVMVHEATFAKEDRKLAYD 244
Query: 328 KMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLN-----KDLSENVGIAFDNMRFP 381
HST QA +E RAK ++LTH S RY L D+ N A+D +
Sbjct: 245 YYHSTTEQAAVTAKEARAKQLILTHISARYQGDASLELQKEAVDVFPNSVAAYDFLEVN 303
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
coli [TaxId: 562]}
Length = 305
Score = 104 bits (258), Expect = 2e-25
Identities = 62/300 (20%), Positives = 104/300 (34%), Gaps = 37/300 (12%)
Query: 114 SGFPLLDKGKQVLAIRGPGP--DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISH 171
+G P + + + P L DCGEGT QL+ + +L ++ISH
Sbjct: 10 AGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFN-----PGKLDKIFISH 64
Query: 172 LHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWL----SVYAARFESVGHLYRLVPL 227
LH DH GL ++ + S LT+ P+ I ++ + + + + +
Sbjct: 65 LHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAG 124
Query: 228 SLFNTKGLIEGTEQHGQNRP---------------------ALDPDTVQILSSLGLESMT 266
+ + A + L
Sbjct: 125 EILDDGLRKVTAYPLEHPLECYGYRIEEHDAPGALNAQALKAAGVPPGPLFQELKAGKTI 184
Query: 267 TCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALVSIGKNSDLLIHEATHEDELEKEAA 326
T N G + GDT PCDA + + K D+++HEAT + +E +A
Sbjct: 185 TLEDGRQINGADYLAAPVPGKALAIFGDTGPCDAALDLAKGVDVMVHEATLDITMEAKAN 244
Query: 327 LKMHSTVSQAIRIGREMRAKFVLLTHFSQRY--AKLPRLNKDLSE---NVGIAFDNMRFP 381
+ HS+ QA + RE +++TH S RY L ++ +A D F
Sbjct: 245 SRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFPATELANDFTVFN 304
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 95.2 bits (235), Expect = 1e-22
Identities = 55/271 (20%), Positives = 93/271 (34%), Gaps = 37/271 (13%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWS---- 188
IL D GEG + L + V+++H H DH GL+ V+ +
Sbjct: 18 SPERILFDAGEGVSTTLGSK--------VYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMG 69
Query: 189 -RVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTE------- 240
R KP R + + + + + PL L
Sbjct: 70 DREKPLDVFYPEGNRAVEEYTEFIKRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQP 129
Query: 241 ---QHGQNRPAL-----DPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYS 292
+H + + + GL+S + VT +T S
Sbjct: 130 FRTKHVSSEVSFGYHIFEVRRKLKKEFQGLDSKEISRLVKEKGRDFVTE-EYHKKVLTIS 188
Query: 293 GDTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTH 352
GD++ D + ++LLIHE T D ++ K H+ + + + + K V+L H
Sbjct: 189 GDSLALDP--EEIRGTELLIHECTFLDARDRRY--KNHAAIDEVMESVKAAGVKKVILYH 244
Query: 353 FSQRYAK-LPRLNKDLSE---NVGIAFDNMR 379
S RY + L + K E +V I + + R
Sbjct: 245 ISTRYIRQLKSVIKKYREEMPDVEILYMDPR 275
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 88.7 bits (218), Expect = 3e-20
Identities = 36/268 (13%), Positives = 70/268 (26%), Gaps = 19/268 (7%)
Query: 126 LAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLL--SQLSAVYISHLHADHHLGLFSV 183
+A+ G IL + +QL L + ++A+ + DH GL S+
Sbjct: 42 IALSDDG-VHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSL 100
Query: 184 IKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTE--- 240
+ + + G + + L +
Sbjct: 101 REGCPHQVWCTDMVHQDLTTGFPL--FNMLSHWNGGLQWNRIELEGSFVIDACPNLKFTP 158
Query: 241 ---QHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMP 297
+ + +LGL T A G+ V + + + D +
Sbjct: 159 FPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLL 218
Query: 298 CDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRY 357
D D + +E + + + + +L H +
Sbjct: 219 VDGT----LWEDDEMQRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTN 274
Query: 358 AKL----PRLNKDLSENVGIAFDNMRFP 381
L P + L V +AFD M
Sbjct: 275 PILDENSPERAEVLRRGVEVAFDGMSIE 302
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 71.3 bits (173), Expect = 1e-14
Identities = 47/270 (17%), Positives = 80/270 (29%), Gaps = 40/270 (14%)
Query: 114 SGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLH 173
GFP + G +L+DCG G +QL + S + AV +SH H
Sbjct: 10 GGFPEAGEATSGYLFEHDG--FRLLVDCGSGVLAQLQKYIT------PSDIDAVVLSHYH 61
Query: 174 ADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTK 233
DH + + A R + +L L ++
Sbjct: 62 HDHVADIGVLQYA---------------------------RLITSATKGQLPELPIYGHT 94
Query: 234 GLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSG 293
G + + L P +T + YS
Sbjct: 95 FDENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGNDIVVYSA 154
Query: 294 DTMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLTHF 353
D+ + K++DL I E +EAA H ++ I ++ K +LLTH
Sbjct: 155 DSSYIPEFIPFTKDADLFICECNMYAH--QEAAKAGHMNSTEVASIAKDANVKELLLTHL 212
Query: 354 SQRYAKLPRLN---KDLSENVGIAFDNMRF 380
+ + S ++ +A +
Sbjct: 213 PHTGNPADLVTEAKQIFSGHITLAHSGYVW 242
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 44.2 bits (103), Expect = 2e-05
Identities = 53/314 (16%), Positives = 102/314 (32%), Gaps = 29/314 (9%)
Query: 133 PDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVKP 192
+LLDCG + R + + ++ AV ++H H DH L + + R
Sbjct: 22 GGRRVLLDCGMFQGKEEARNH-APFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGP- 79
Query: 193 ECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRPALDPD 252
VYA R V + ++ +L G E + L P
Sbjct: 80 -----------------VYATRAT-VLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPL 121
Query: 253 TVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDALV----SIGKNS 308
LG S+ H P + V + G + YSGD + V S+ +
Sbjct: 122 EYGEWLRLGALSLAFGQAGHLPGSAFV-VAQGEGRTLVYSGDLGNREKDVLPDPSLPPLA 180
Query: 309 DLLIHEATHEDE---LEKEAALKMHSTVSQAIRIGREMRAKFVLLTHFSQRYAKLPRLNK 365
DL++ E T+ D +E + + + + G ++ + +Q + +
Sbjct: 181 DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVER-AQEILYVLYTHG 239
Query: 366 DLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKK 425
I D+ + + ++ + + N + + + SK
Sbjct: 240 HRLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVEHTEASKA 299
Query: 426 ISLANLPKLKLFYP 439
++ A P + L
Sbjct: 300 LNRAPGPMVVLAGS 313
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 40.9 bits (94), Expect = 3e-04
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 133 PDTCILLDCG--EGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWS 188
I+LDCG G Y +D +++ + ISH H DH L ++ S
Sbjct: 25 KGRKIMLDCGIHPGLEGMDALPYIDLID--PAEIDLLLISHFHLDHCGALPWFLQKTS 80
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 38.5 bits (88), Expect = 6e-04
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 33/180 (18%)
Query: 163 QLSAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLY 222
Q +AV++SH H DH + + A + +L + + E
Sbjct: 29 QHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEK-NFTR 87
Query: 223 RLVPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMV 282
++ L+ + +G S+ V H ++
Sbjct: 88 EMIGLNKNDVI-------------------------KVGEISVEIVPVDHDAYGASALLI 122
Query: 283 TKSGHKITYSGD-------TMPCDALVSIGKNSDLLIHEATHEDELEKEAALKMHSTVSQ 335
H ITY+GD A K+++LL+ E E+E + VS+
Sbjct: 123 RTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSE 182
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 37.5 bits (86), Expect = 0.003
Identities = 4/43 (9%), Positives = 15/43 (34%)
Query: 134 DTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADH 176
+ +L+D G + ++ ++ + +S +
Sbjct: 24 NVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIEC 66
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 35.4 bits (80), Expect = 0.010
Identities = 9/56 (16%), Positives = 22/56 (39%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187
IL+D + +++ + + ++ + + +H H DH G + K
Sbjct: 34 TSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKET 89
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 34.3 bits (77), Expect = 0.020
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187
D I++D G + + S + ++ V +H+H DH A
Sbjct: 30 HKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENAT 85
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 34.2 bits (77), Expect = 0.025
Identities = 20/170 (11%), Positives = 42/170 (24%), Gaps = 22/170 (12%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVK 191
G + L++ G ++LV SQ+ I+H H DH L + V+
Sbjct: 30 GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQ 89
Query: 192 ----PECKLTLLAPRQIITWLSVYAARFESVGHLYRLVPLSLFNTKGLIEGTEQHGQNRP 247
+ + + + L + + +G R
Sbjct: 90 VLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRH 149
Query: 248 ALDPDTVQILSSLGLESMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMP 297
L ++ + + + GD +
Sbjct: 150 RLQVI------------------EAHGHSDDHVVFYDVRRRRLFCGDALG 181
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 33.0 bits (74), Expect = 0.057
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187
PD +LLD G + + A L + +SH HADH + + +
Sbjct: 44 TPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRT 99
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 32.6 bits (73), Expect = 0.079
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 16/66 (24%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSA----------VYISHLHADHHLGLF 181
+L+D G +G + L + L A +YI+H+H DH GL
Sbjct: 69 TGSKLVLVDTGAAGL------FGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLM 122
Query: 182 SVIKAW 187
+
Sbjct: 123 VGEQLA 128
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 31.8 bits (71), Expect = 0.16
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 132 GPDTCILLDCGEGTYS-QLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187
+L+D +G Y+ + + VD +++ + ++H DH L + +K
Sbjct: 47 LNGANVLIDGWKGNYAKEFIDALSKIVD--PKEITHIIVNHTEPDHSGSLPATLKTI 101
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 31.5 bits (70), Expect = 0.19
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAW 187
P IL++ +++ + S + ISH H DH G + +
Sbjct: 31 TPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQT 86
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 29.1 bits (65), Expect = 0.31
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 341 REMRAKFV---LLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKK-----KKKK 392
+EMRA V L + L R LS + + E++ + +
Sbjct: 15 KEMRANVVAESTLKESAAINQILGRRWHALSREEQAKYYELARKERQLHMQLYPGWSARD 74
Query: 393 KRKKKKKKKKKK 404
KKKK+K++K
Sbjct: 75 NYGKKKKRKREK 86
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 30.4 bits (67), Expect = 0.46
Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 28/194 (14%)
Query: 126 LAIRGPGPDTCILLDCGEG-------------TYSQLVRLYGSAVDTLL--------SQL 164
AI ++D GE D + +L
Sbjct: 15 DAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKL 74
Query: 165 SAVYISHLHADHHLGLFSVIKAWSRVKPECKLTLLAPRQIITWLSVYAARFESVGHLYRL 224
+ ++H H+DH + ++ + V + + + ++ ++++ ++
Sbjct: 75 DFILVTHTHSDHIGNVDELLSTY-PVD-----RVYLKKYSDSRITNSERLWDNLYGYDKV 128
Query: 225 VPLSLFNTKGLIEGTEQHGQNRPALDPDTVQILSSLGLESMTTCLVRHCPNAFG-VTMVT 283
+ + +I+ Q + D D +S N+ +++V
Sbjct: 129 LQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVK 188
Query: 284 KSGHKITYSGDTMP 297
+G KI GD
Sbjct: 189 VNGKKIYLGGDLDN 202
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 29.7 bits (66), Expect = 0.97
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 132 GPDTCILLDCGEGTYSQLVRLYGSAVDTLLSQLSAVYISHLHADHHLGLFSVIKAWSRVK 191
G I++D + + + + V SH HADH G+ +++
Sbjct: 111 GDSGWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVAS 170
Query: 192 PECKL 196
++
Sbjct: 171 GAVQI 175
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 29.2 bits (65), Expect = 1.2
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 3/119 (2%)
Query: 306 KNSDLLIHEATHEDELEKEAALKMHSTVSQAIRIGREMRAKFVLLT--HFSQRYA-KLPR 362
+N ++ T D E + R G ++ +F F+ K
Sbjct: 125 ENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYF 184
Query: 363 LNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREF 421
K+L + +D+ E K + +K++ K ++ + F
Sbjct: 185 YQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESF 243
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 27.8 bits (62), Expect = 1.4
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 387 KKKKKKKRKKKKKKKKKKVNNSIQISSRP--EICREFDSKKISLA----NLPKLKLFYPA 440
+ KK++K++ K +K V +++S R + K + A P
Sbjct: 2 RNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPV 61
Query: 441 LKAMF-AEYQDEIENRAIRRNLK 462
K + A+ + + L
Sbjct: 62 AKVLNSAKANALHNDEMLEDRLF 84
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 27.2 bits (60), Expect = 1.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 378 MRFPEKKKKKKKKKKKRKKKKKK 400
M P + KK+ +KKK K+
Sbjct: 1 MVTPREPKKRTTRKKKDPNAPKR 23
Score = 26.4 bits (58), Expect = 3.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKK 404
++ KK+ RKKK K+
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKR 23
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 26.1 bits (57), Expect = 1.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKK 404
P +K + + RK K KK++
Sbjct: 43 PLTMRKDGIQTRNRKVSSKGKKRR 66
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 27.1 bits (60), Expect = 2.0
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 380 FPEKKKKKKKKKKKRKKKKKKKKK 403
E + + K+ +K++
Sbjct: 78 LKEVVPEGYEMKRVGDYYVFEKRE 101
Score = 26.7 bits (59), Expect = 2.7
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKK 404
K+ + + KR +K+
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKR 100
Score = 26.3 bits (58), Expect = 3.5
Identities = 2/23 (8%), Positives = 10/23 (43%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
++ + + K+ +K++
Sbjct: 79 KEVVPEGYEMKRVGDYYVFEKRE 101
Score = 25.2 bits (55), Expect = 7.7
Identities = 2/22 (9%), Positives = 8/22 (36%)
Query: 379 RFPEKKKKKKKKKKKRKKKKKK 400
+ + K+ +K++
Sbjct: 80 EVVPEGYEMKRVGDYYVFEKRE 101
>d1ohpa1 d.17.4.3 (A:1-125) Delta-5-3-ketosteroid isomerase,
steroid delta-isomerase, KSI {Comamonas testosteroni,
also known as Pseudomonas testosteroni [TaxId: 285]}
Length = 125
Score = 27.5 bits (60), Expect = 2.0
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 41 AMNEDDKAALVAHFSPHHIMSHPRY 65
A+N D +VA F+ + +P
Sbjct: 17 ALNAGDLDGIVALFADDATVENPVG 41
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.1 bits (59), Expect = 2.0
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 362 RLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKKK 401
R K VG+A D + K+ K+K ++ ++K++++
Sbjct: 62 RFKK--CIYVGMATDLVLDDSKRLAKRKLIEENREKRRRE 99
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 2.2
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKK 403
+ + + +K+ K +K K K++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEEN 131
Score = 27.8 bits (62), Expect = 2.5
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 380 FPEKKKKKKKKKKKRKKKKKKKKKK 404
F + + +K+ K+ K K K++ +K
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEK 133
Score = 27.8 bits (62), Expect = 3.0
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
E +K+ K++K + K++ +K K
Sbjct: 114 EARKQMSKEEKLKIKEENEKLLK 136
Score = 27.0 bits (60), Expect = 4.5
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSI 409
+K+ K++K K K++ +K K+ I
Sbjct: 115 ARKQMSKEEKLKIKEENEKLLKEYGFCI 142
Score = 26.2 bits (58), Expect = 8.6
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 385 KKKKKKKKKRKKKKKKKKKKVNNSIQ 410
K + + +K+ K++K K K+ N +
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL 135
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 2.2
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 380 FPEKKKKKKKKKKKRKKKKKKKKKK 404
F +K++KK+ + KK+ + +++K
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREK 125
Score = 27.4 bits (61), Expect = 3.0
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
E+KK+ ++KK+ + +++K ++
Sbjct: 106 EQKKQLTSQEKKQIRLEREKFEE 128
Score = 26.6 bits (59), Expect = 5.6
Identities = 5/23 (21%), Positives = 16/23 (69%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
+KK+ ++KK+ + +++K ++
Sbjct: 107 QKKQLTSQEKKQIRLEREKFEED 129
Score = 26.6 bits (59), Expect = 6.8
Identities = 5/26 (19%), Positives = 15/26 (57%)
Query: 385 KKKKKKKKKRKKKKKKKKKKVNNSIQ 410
+ +K++KK+ ++KK+ + +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 27.5 bits (61), Expect = 2.2
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 381 PEKKKKKKKKKKKRKKKKKKKKKKV 405
P+ K K K +++ K + + +K+++
Sbjct: 1 PKNKGKGGKNRRRGKNENESEKREL 25
Score = 26.0 bits (57), Expect = 5.9
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 389 KKKKKRKKKKKKKKKKVNN 407
K K K K +++ K + +
Sbjct: 2 KNKGKGGKNRRRGKNENES 20
Score = 25.6 bits (56), Expect = 8.4
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 384 KKKKKKKKKKRKKKKKKKKKKVN 406
K K K K +R+ K + + +K
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRE 24
>d1zroa1 a.264.1.1 (A:8-282) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 275
Score = 28.1 bits (62), Expect = 2.3
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFD 422
+ K + K + +K K+ N + S + +
Sbjct: 220 IRSKFEWHTLSKEYETQKVPKENAENYLIKISENKNDAKVS 260
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 26.5 bits (58), Expect = 3.2
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 375 FDNMRFPEKKKKKKKKKKKRKKKKKKKKKKVNNSIQISS 413
++ + EK++ + K KKK ++++
Sbjct: 79 WEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTT 117
>d1ztxe1 b.1.18.4 (E:300-400) Envelope glycoprotein {West Nile virus
[TaxId: 11082]}
Length = 101
Score = 26.3 bits (58), Expect = 3.2
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 273 CPNAFGVT-MVTKSGH-----KITYSGDTMPCDALVSI 304
C AF +GH ++ Y+G PC +S
Sbjct: 6 CSKAFKFLGTPADTGHGTVVLELQYTGTDGPCKVPISS 43
>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b {Human
(Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 27.6 bits (60), Expect = 3.2
Identities = 6/63 (9%), Positives = 15/63 (23%), Gaps = 4/63 (6%)
Query: 375 FDNMRFPEKKKKKKKKKKKRKKKKKK--KKKKVNNSIQISSRPEICREFDSK-KISLANL 431
F M+ ++ +K + + FD + + +
Sbjct: 229 FSAMKANTMSNYTLLPPSLLDHRRGAFLRKGVCGDWKNHFT-VAQSEAFDRAYRKQMRGM 287
Query: 432 PKL 434
P
Sbjct: 288 PTF 290
>d1h32a2 a.3.1.8 (A:151-261) Di-heme cytochrome c SoxA {Rhodovulum
sulfidophilum [TaxId: 35806]}
Length = 111
Score = 26.4 bits (58), Expect = 3.3
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 15/83 (18%)
Query: 17 LDCPSEDYLDSLLGESIFSQHQ--------SCAMNEDDKAALVAHFSPHHIMSHPRYKEF 68
+D P++ + G I+ SC D H S I P Y+
Sbjct: 1 IDGPAQSTWE--KGREIYYTRYGQLDLSCASCHEQYFDHYIRADHLSQGQINGFPSYRLK 58
Query: 69 MSKFPSTTQHLVLNESNECQGST 91
++ + C T
Sbjct: 59 NARLNAVHDRF-----RGCIRDT 76
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 27.6 bits (61), Expect = 3.5
Identities = 6/23 (26%), Positives = 17/23 (73%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
+K+++ ++K ++ K K+K +K+
Sbjct: 308 QKRRETEEKMRRAKLAKEKAEKE 330
Score = 27.2 bits (60), Expect = 4.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
+K+++ ++K +R K K+K +K
Sbjct: 307 NQKRRETEEKMRRAKLAKEKAEK 329
Score = 26.9 bits (59), Expect = 5.9
Identities = 4/24 (16%), Positives = 18/24 (75%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKKV 405
++++ ++K ++ + K+K +K+++
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKERL 332
Score = 26.1 bits (57), Expect = 9.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKKK 404
E +K+++ ++K R+ K K+K +
Sbjct: 306 ENQKRRETEEKMRRAKLAKEKAE 328
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 25.8 bits (57), Expect = 4.0
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 18/65 (27%)
Query: 341 REMRAKFVLLTHFSQRYAKLPRLNKDLSENVGIAFDNMRFPEKKKKKKKKKKKRKKKKKK 400
R + + T + + D E+ KKK ++ + K+K
Sbjct: 47 RRVNILHLEPTDKK---IDIQKGASD---------------EEVKKKLEESNLTEYMKEK 88
Query: 401 KKKKV 405
K ++
Sbjct: 89 IKIRM 93
>d1ok8a1 b.1.18.4 (A:298-394) Envelope glycoprotein {Dengue virus
type 2 [TaxId: 11060]}
Length = 97
Score = 25.9 bits (57), Expect = 4.1
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 6/38 (15%)
Query: 273 CPNAFGVT-MVTKSGH-----KITYSGDTMPCDALVSI 304
C F V + ++ H ++ Y GD PC I
Sbjct: 5 CTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEI 42
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 25.9 bits (57), Expect = 4.4
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 379 RFPEKKKKKKKKKKKRKKKKK 399
+ E +++K+++KK +KKKKK
Sbjct: 84 KIAEIREQKREQKKDKKKKKK 104
Score = 25.5 bits (56), Expect = 6.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKK 404
+K + +++K+ +KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
Score = 25.1 bits (55), Expect = 9.8
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKK 403
K + +++K+++KK KKKKKK
Sbjct: 83 RKIAEIREQKREQKKDKKKKKK 104
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 27.0 bits (59), Expect = 4.4
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 382 EKKKKKKKKKKKRKKKKKKKKK 403
K K++ + R + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 26.3 bits (57), Expect = 7.4
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKK 404
K K++ + + + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
>d1kcfa2 c.55.3.7 (A:39-256) Mitochondrial resolvase ydc2 catalytic
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 218
Score = 27.0 bits (59), Expect = 4.4
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 383 KKKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLAN 430
K KKK + + V I E K + +
Sbjct: 135 SYWASVLNTKASFSKKKSRVQMVKELIDGQKILFENEEALYKWNNGSR 182
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 194
Score = 26.7 bits (58), Expect = 5.6
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 243 GQNRPALDPDTVQILSSLGLE-SMTTCLVRHCPNAFGVTMVTKSGHKITYSGDTMPCDAL 301
G++R A+ P+ V+ L LG E + + +T +G I + A
Sbjct: 12 GEDRVAISPEVVKKLVGLGFEVIVEQGAGVGA--SITDDALTAAGATIASTAAQALSQAD 69
Query: 302 VSIGKNSDLLIHEATHEDELEKEAA 326
V + E T E L KE A
Sbjct: 70 VVWKVQRPMTAEEGTDEVALIKEGA 94
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 26.4 bits (57), Expect = 7.7
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 103 LDKEIFPMLSDSGFPLLDKGKQVLAIRGPGPDTCILLDCGEGTY 146
+ + +F + + +V+ RG D +LL+ E Y
Sbjct: 266 MTEPLFYAMVAEAAQDAHRLLRVVEKRGQPFDHPVLLNHPETHY 309
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 26.2 bits (57), Expect = 8.7
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 384 KKKKKKKKKKRKKKKKKKKKKVNNSIQISSRPEICREFDSKKISLANLPK 433
K+ ++ +K K + K + + + E C + + L
Sbjct: 258 AKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHS 307
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.383
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,718,529
Number of extensions: 80809
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 110
Length of query: 485
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,185,626
Effective search space: 469507896
Effective search space used: 469507896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)