BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16252
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
Peptide Synthetase From Mycobacterium Tuberculosis
Length = 478
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 18/146 (12%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT---------- 149
+L+TGATGFLG+ L+ +LLR + +VRA+ ++ ++R++K D+
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK 135
Query: 150 --VAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTN 207
A L+ E PDLGL R + V+L+ AA + E N
Sbjct: 136 ELAADRLEVVAGDKSE----PDLGLDQPXWRRLAETVDLIVDSAAXVNA-FPYHELFGPN 190
Query: 208 MCATQTMLDLAKQCKNLKMFTYVSTA 233
+ T ++ +A K LK FTYVSTA
Sbjct: 191 VAGTAELIRIALTTK-LKPFTYVSTA 215
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRN 76
+L+TGATGFLG+ L+ +LLR + +VRA+ ++ ++R++K D+ EL+R+
Sbjct: 76 VLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS-GDPELLRH 133
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 91 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTV 150
+DD E IL+TG GF+G L + P+ K + V+ + + N L
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVV-VLDKFRSNTLFSNNRPSSLGHF 62
Query: 151 AISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTN 207
+ F K A D+ D +RL + +FH AA T ++EL ++TN
Sbjct: 63 KNLIGF-----KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQEL--VMKTN 115
Query: 208 MCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNI 242
A +L++A+ K ++ + + N+ N+
Sbjct: 116 YQAFLNLLEIARSKKAKVIYASSAGVYGNTKAPNV 150
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 9 LDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTI 45
+DD E IL+TG GF+G L + P+ K +
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVV 40
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 14/135 (10%)
Query: 10 DDFYEGAEILMTGATGFLGKLL----------IEKLLRSFPRVKTIYVIVRAKKNQSPQQ 59
+ F++G + +TG TGF G L ++ + P V +++ R Q
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGM--QS 61
Query: 60 RIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLR 119
I + D ++E IR + + A+ P + Y +E + T +T +G + + + +R
Sbjct: 62 EIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSY--SEPVETYSTNVMGTVYLLEAIR 119
Query: 120 SFPRVKTIYVIVRAK 134
VK + I K
Sbjct: 120 HVGGVKAVVNITSDK 134
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 17/165 (10%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ +TG TGFLG +I+ LL + V T +RA P+++ D V+ +
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNT---TIRA----DPERKRD-----VSFLTNLPGA 51
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+ K DL +PD +FH A+ + F E I T L + K
Sbjct: 52 SEKLHFFNADLS-NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKR-TVDGALGILK 109
Query: 220 QC---KNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISK 261
C K +K F Y S+ + S+ ++++ ++ +LL+ K
Sbjct: 110 ACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVK 154
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCST 160
L+TGATGFLG LIE L R IY +RA + ++ L+
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHR---IYCFIRADNEEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 161 SKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQ 220
S D DD L + ++ A T F ++ E + N+ T ++ LA+Q
Sbjct: 130 SNIEVIVGDFECX-DDVVLPENXDTIIHAGARTDHFGDD-DEFEKVNVQGTVDVIRLAQQ 187
Query: 221 CKNLKMFTYVSTAFSNSY 238
+ YVST +Y
Sbjct: 188 --HHARLIYVSTISVGTY 203
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 19 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ 55
L+TGATGFLG LIE L R IY +RA +
Sbjct: 73 LLTGATGFLGAYLIEALQGYSHR---IYCFIRADNEE 106
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 19 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ 55
L+TGATGFLG LIE L R IY +RA +
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHR---IYCFIRADNEE 187
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 101 LMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ 137
L+TGATGFLG LIE L R IY +RA +
Sbjct: 154 LLTGATGFLGAYLIEALQGYSHR---IYCFIRADNEE 187
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
Quinone Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 56
I +TGATG LG +IE L+++ P + + ++ K Q+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA 40
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 138
I +TGATG LG +IE L+++ P + + ++ K Q+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA 40
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 53
I +TGATG LG L+I+ LL+ P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK 38
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135
I +TGATG LG L+I+ LL+ P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK 38
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 53
I +TGATG LG L+I+ LL+ P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK 38
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135
I +TGATG LG L+I+ LL+ P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEK 38
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 84 GTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 138
G+ S P+ + + IL+TG TG GK + K+L + K I V R + QS
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQS 61
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 2 GTSSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQS 56
G+ S P+ + + IL+TG TG GK + K+L + K I V R + QS
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQS 61
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 28/147 (19%)
Query: 99 EILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAI-SLKFT 157
+IL+TG GF+G ++ ++ K Q IDK+ + SL
Sbjct: 2 KILITGGAGFIGSAVVRHII---------------KNTQDTVVNIDKLTYAGNLESLSDI 46
Query: 158 CSTSKESAQAPDLGLSPDDKRLVTS-KVNLVFHCAATLRFDEEL---KEAIRTNMCATQT 213
+++ + + D+ S + R+ + + V H AA D + I TN+ T
Sbjct: 47 SESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYA 106
Query: 214 MLDLAKQC--------KNLKMFTYVST 232
+L++A++ KN F ++ST
Sbjct: 107 LLEVARKYWSALGEDKKNNFRFHHIST 133
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYV----------IVRAKKNQSPQQRIDKMLDT 67
IL+TG GF+G + L+S+ K I V++ ++ + +
Sbjct: 27 ILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQN 86
Query: 68 VAIIE-LIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKT 126
++E +I+ R Q I+ A+ +D E + T +G + + +L++ +P +K
Sbjct: 87 GELLEHVIKERDVQVIVNFAAESHVDRSIENP--IPFYDTNVIGTVTLLELVKKYPHIKL 144
Query: 127 IYV 129
+ V
Sbjct: 145 VQV 147
>pdb|3SGG|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_2193)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.25 A
Resolution
Length = 536
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 474 SAREWEWDNSNVQSMWTLVPAGDRVRFPFNIRDLDWDDYL 513
+A W ++NS + P+G FP D D DDYL
Sbjct: 349 AALRWYYENSKEGDYFVAGPSGSSYIFPSKXSDADLDDYL 388
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 53
I +TGATG LG L+I+ L + P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEK 38
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135
I +TGATG LG L+I+ L + P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEK 38
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 53
I +TGATG LG L+I+ L + P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEK 38
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKK 135
I +TGATG LG L+I+ L + P + I ++ +K
Sbjct: 3 IAVTGATGQLGGLVIQHLXAAVPASQIIAIVRNVEK 38
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 11 DFYEGAEILMTGATGFLGKLL------IEKLLRSF----PRVKTIYVIVRAKKNQSPQQR 60
+F++G + +TG TGF G L + +++ + P V +++ IVR N +
Sbjct: 5 NFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRL--NDLMESH 62
Query: 61 IDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRS 120
I + D + I + + A+ P + YE + + T +T +G + LL +
Sbjct: 63 IGDIRDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYE--QPIKTYSTNVMGTV---HLLET 117
Query: 121 FPRVKTIYVIVRAKKNQSPQQR 142
+V I +V ++ R
Sbjct: 118 VKQVGNIKAVVNITSDKCYDNR 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,048,652
Number of Sequences: 62578
Number of extensions: 649996
Number of successful extensions: 1787
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1759
Number of HSP's gapped (non-prelim): 34
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)