RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16252
(545 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 184 bits (468), Expect = 3e-52
Identities = 71/345 (20%), Positives = 128/345 (37%), Gaps = 40/345 (11%)
Query: 86 ASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 145
+ E +L+TGATGFLG+ L+ +LLR + +VRA+ ++ ++R++K
Sbjct: 62 TAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEK 121
Query: 146 MLDTVAISLKFTCSTSKES--------AQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFD 197
D+ L PDLGL R + V+L+ AA +
Sbjct: 122 TFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAF 181
Query: 198 EELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELL 257
E N+ T ++ +A K LK FTYVSTA + + + ++E
Sbjct: 182 -PYHELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIE---------PSAFTE-- 228
Query: 258 KISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVIST 315
D + + Y +K A E LL E + PV +FR ++++
Sbjct: 229 ------DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILAD 282
Query: 316 WKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKA-------DIVPADLVVNALICA 368
+ + +++ G+ +PD + D +P V A+
Sbjct: 283 TSYAGQLNMSDWV-TRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVL 341
Query: 369 PWNGHERFHKDPSCLPIYNYVNSKDNPLTWGEFITKSLKEGVKIP 413
+ Y+ +N D+ + E++ ++ G I
Sbjct: 342 GARVA---GSSLAGFATYHVMNPHDDGIGLDEYVDWLIEAGYPIR 383
Score = 69.6 bits (170), Expect = 9e-13
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 4 SSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDK 63
++ E +L+TGATGFLG+ L+ +LLR + +VRA+ ++ ++R++K
Sbjct: 62 TAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEK 121
Query: 64 MLDT 67
D+
Sbjct: 122 TFDS 125
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 74.6 bits (184), Expect = 9e-15
Identities = 45/322 (13%), Positives = 82/322 (25%), Gaps = 81/322 (25%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ GATG LG + + +I R L +
Sbjct: 16 YAVLGATGLLGHHAARAIRA---AGHDLVLIHRPSSQIQR-------LAYLEP------- 58
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAI-RTNMCATQTMLDLA 218
E A ++ L ++ V A + + + T
Sbjct: 59 ---ECRVA-EM-LDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAAC 113
Query: 219 KQCKNLKMFTYVSTA---FSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
Q + + YV +A + E Y
Sbjct: 114 LQAR-VPRILYVGSAYAMPRHPQGLPGHE---------------------GLFYDSLPSG 151
Query: 276 LSHENMNTYTLTKAAAEQLLCEEAQF-FPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLV 334
S Y L K A ++ E+A+ PV I P +V+ D ++
Sbjct: 152 KSS-----YVLCKWALDEQAREQARNGLPVVIGIPGMVLG------EL--DIGPTTGRVI 198
Query: 335 TGAQAGVVRTFLVDPDVKADIVPADLVVNALICAPWNGH--ERFHKDPSCLPIYNYVNSK 392
T G + + + +++ A L+ A G ER+ +
Sbjct: 199 TAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGRIGERY--------LLT----- 242
Query: 393 DNPLTWGEFITKSLKE-GVKIP 413
+ L + + + G P
Sbjct: 243 GHNLEMADLTRRIAELLGQPAP 264
Score = 35.0 bits (81), Expect = 0.053
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 3/45 (6%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRID 62
+ GATG LG + + +I R ++
Sbjct: 16 YAVLGATGLLGHHAARAIRA---AGHDLVLIHRPSSQIQRLAYLE 57
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 62.7 bits (153), Expect = 7e-11
Identities = 46/283 (16%), Positives = 82/283 (28%), Gaps = 78/283 (27%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYV-IVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
IL+TG++G +G L+ L + + I IV+ +D + + I
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLD-VSNRDEI------ 54
Query: 159 STSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL--RFDEELKEAIRTNMCATQTMLD 216
D+ + ++ +FH A L + +++ A + NM T +L+
Sbjct: 55 -----------------DRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILE 97
Query: 217 LAKQCKNLKMFTYVST--AFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
AKQ ++ ST F + +
Sbjct: 98 AAKQH-RVEKVVIPSTIGVFG-----------------------------PETPKNKVPS 127
Query: 275 RLSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTWKEP-------IPGWID 325
+ +TK AAE L E V R +IS EP
Sbjct: 128 ITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFY 187
Query: 326 NLYGPTGLVTGAQAGVVRTFLVDPDVKADIVPADLVVNALICA 368
A + P+ ++ + AL+
Sbjct: 188 Y----------AVKREKYKCYLAPNRALPMMYMPDALKALVDL 220
Score = 39.2 bits (92), Expect = 0.003
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYV-IVRAKKNQSPQQRIDKMLDTVAIIELIRN 76
IL+TG++G +G L+ L + + I IV+ +D + + I +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLD-VSNRDEIDRAVEK 60
Query: 77 RPNQTIM---GTASPPSLDDFYEGAEILMTG 104
I G S D ++ M G
Sbjct: 61 YSIDAIFHLAGILSAKGEKDPALAYKVNMNG 91
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 54.8 bits (132), Expect = 1e-08
Identities = 42/268 (15%), Positives = 80/268 (29%), Gaps = 78/268 (29%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+ + GA+G G++L++++L + +I R +K ++ ++ +
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGR-RKLTFDEEAYKN-VNQEVVDF----- 72
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
DD ++ F C T R + +R + +LAK
Sbjct: 73 ------------EKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAK 120
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
K F +S+ ++
Sbjct: 121 AG-GCKHFNLLSSKGADKSSN--------------------------------------- 140
Query: 280 NMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPG-WIDNLYGPTGLVTGAQ 338
Y K E + EE +F +FRP +++ +E PG W+ +
Sbjct: 141 --FLYLQVKGEVEAKV-EELKFDRYSVFRPGVLLCDRQESRPGEWLVRKFFG-------- 189
Query: 339 AGVVRTFLVDPDVKADIVPADLVVNALI 366
L D VP VV A++
Sbjct: 190 ------SLPDSWASGHSVPVVTVVRAML 211
Score = 40.2 bits (94), Expect = 0.001
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
+ + GA+G G++L++++L + +I R
Sbjct: 21 VFILGASGETGRVLLKEILEQ-GLFSKVTLIGR 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 5e-08
Identities = 88/553 (15%), Positives = 147/553 (26%), Gaps = 244/553 (44%)
Query: 150 VAISLKFTCSTSKE----SAQAPDLGLSPDDKRLVTSKVNLV------------------ 187
V + F S +E P G + DD+ T+ LV
Sbjct: 22 VPTASFFIASQLQEQFNKILPEPTEGFAADDE--PTTPAELVGKFLGYVSSLVEPSKVGQ 79
Query: 188 -----------F----------HC-AATLRFDEEL-----KEAIRT----NMCATQTM-- 214
F H AA L + + KE I+ + A +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 215 -----LDLAKQCKNLKMFT----------YVSTAFS------NSYRKNIEEIIYKAHTHY 253
L A N ++ Y F +Y + ++I +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDY----FEELRDLYQTYHVLVGDLIKFSAET- 194
Query: 254 SELLKISKLDVDDPKYQET----RERLSHENM--NTYTLTKAAAE-------QLLCEEAQ 300
L ++ + +D K E L + + + L QL A
Sbjct: 195 --LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL----AH 248
Query: 301 FFPVCI---FRPSIVISTWKEPIPGWIDNLYGPTGLVTG-------AQAGVVRTFLVDPD 350
+ F P + L G TG G A+ +F
Sbjct: 249 YVVTAKLLGFTPGEL-----------RSYLKGATGHSQGLVTAVAIAETDSWESFF---- 293
Query: 351 VKADIVPADLVVNALICAPWNG---HERFHKDPSC-LPIYNYVNSKDNPLTWGEFITKSL 406
V A+ + G +E + P+ LP P + SL
Sbjct: 294 --------VSVRKAITVLFFIGVRCYEAY---PNTSLP----------P----SILEDSL 328
Query: 407 KEGVKIPSSQTRTNLLQDGQGSVRSRTIQYPGVGVGQLQRAVHVDPSTRGGPG----SIS 462
+ +PS +L S+ + Q+Q +V+ + P IS
Sbjct: 329 ENNEGVPSP-----ML-----SIS-------NLTQEQVQD--YVNKTNSHLPAGKQVEIS 369
Query: 463 VQYSGPR----------LGRLSA--REWEWDNSNVQSMWTLVPAGDR-----VRF----- 500
+ +G + L L+ R+ + + QS +P +R RF
Sbjct: 370 L-VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---IPFSERKLKFSNRFLPVAS 425
Query: 501 PFN-----------IRDL--------------------DWDDYLRAYVRGTLVHHLQDKL 529
PF+ +DL D D LR G++ + D +
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVL-SGSISERIVDCI 483
Query: 530 --DPVTRQKAWKR 540
PV W+
Sbjct: 484 IRLPVK----WET 492
Score = 44.7 bits (105), Expect = 7e-05
Identities = 51/300 (17%), Positives = 89/300 (29%), Gaps = 97/300 (32%)
Query: 35 LLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTV---AIIELIRNRPNQ-TIM-GTASPP 89
L ++ + ++ R D +I++++ N P TI G
Sbjct: 1635 LYKTSKAAQDVW------------NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 90 SLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
+ + Y M T GKL EK+ + T Y +S + + T
Sbjct: 1683 RIRENYSA----MIFETIVDGKLKTEKIFKEINEHSTSYTF------RSEK---GLLSAT 1729
Query: 150 ----VAISLKFTCSTS-----KESAQAPD--------LG-----------LSPDDKRLVT 181
A+ + K P LG +S +
Sbjct: 1730 QFTQPAL---TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES----- 1781
Query: 182 SKVNLVFHCAATLRFDEELKEAIRTN--MCA--------TQTMLDLAKQCKNLKMFT--Y 229
V +VF+ T++ E R+N M A + + L + + T
Sbjct: 1782 -LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL 1840
Query: 230 VSTAFSNSYRKNIEEIIY------KAHTHYSELL---KISKLDV----DDPKYQETRERL 276
V N Y N+E Y +A + +L K+ K+D+ +E L
Sbjct: 1841 VEIV--N-Y--NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 28.1 bits (62), Expect = 9.2
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 33/82 (40%)
Query: 426 QGSVRSRTIQYPGVG--------VGQ--LQRA-VHVDPS--------TRGGPGSISVQYS 466
QGS Q G+G Q RA H + P ++++ +
Sbjct: 1624 QGS------QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 467 GPRLGRLSAREWEWDNSNVQSM 488
G + R+ RE N +M
Sbjct: 1678 GEKGKRI--RE------NYSAM 1691
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 53.2 bits (128), Expect = 9e-08
Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 65/294 (22%)
Query: 87 SPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKM 146
S + +++G I + GA G +G+ L ++L++ P+
Sbjct: 4 SSGRENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAP---- 59
Query: 147 LDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL--RFDEELKEAI 204
+ ++ + DL + ++LV ++ +++FH AA + + + +
Sbjct: 60 -AGFSGAVDARAA---------DLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGY 109
Query: 205 RTNMCATQTMLDLAKQC----KNLKMFTYVSTA--FSNSYRKNIEEIIYKAHTHYSELLK 258
R N+ T+ + D + + S+ F I +
Sbjct: 110 RINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE------------- 156
Query: 259 ISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCE--EAQFFPVCIFRPSIVISTW 316
P + +Y KA E LL + FF R +
Sbjct: 157 ----FHTTP-------------LTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRP 199
Query: 317 KEPIPGWIDNLYGPTGLVTG----AQAGVVRTFLVDPDVKADIVPADLVVNALI 366
+P +G + G V ++ V LI
Sbjct: 200 GKPNA-------AASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLI 246
Score = 32.7 bits (75), Expect = 0.30
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 5 SPPSLDDFYEGAEILMTGATGFLGKLLIEKLLR 37
S + +++G I + GA G +G+ L ++L++
Sbjct: 4 SSGRENLYFQGMHIAIIGAAGMVGRKLTQRLVK 36
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 51.6 bits (124), Expect = 3e-07
Identities = 42/270 (15%), Positives = 71/270 (26%), Gaps = 86/270 (31%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+++ G GF+G L+++LL V V +D +
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQ----VHV-----------VDNL------------L 67
Query: 160 TSKES--AQAPDLGL------SPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTNM 208
++++ P + + + + VFH A + N
Sbjct: 68 SAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNT 127
Query: 209 CATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPK 268
T + + K K LK Y + I K D
Sbjct: 128 LTTLKLYERLKHFKRLKKVVYSAAG----------CSIA------------EKTFDDAKA 165
Query: 269 YQETRERLSHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDN 326
+ET H N + Y+++K E + P R N
Sbjct: 166 TEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQ---------------N 210
Query: 327 LYGP---------TGLVTGAQAGVVRTFLV 347
+YGP G V TF+
Sbjct: 211 VYGPGEILGAGRWRGTPATVWRNVTPTFIY 240
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 50.1 bits (119), Expect = 9e-07
Identities = 55/283 (19%), Positives = 83/283 (29%), Gaps = 64/283 (22%)
Query: 101 LMTGATGFLGKLLIEKLLR--SFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
L+ G TG +G L E L + +Y + R + + +
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR-----RTRPAWHEDNPINYVQC---- 55
Query: 159 STSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATL---RFDEELKEAIRTNMCATQTML 215
D+ PDD + S + V H R E+ E N + +L
Sbjct: 56 ----------DI-SDPDDSQAKLSPLTDVTHVFYVTWANRSTEQ--ENCEANSKMFRNVL 102
Query: 216 D-LAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
D + C NLK + + + K++ DP Y E
Sbjct: 103 DAVIPNCPNLKHISLQTGRKH----------------YMGPFESYGKIESHDPPYTEDLP 146
Query: 275 RLSHENMNTYTLTKAAAEQLLCEEAQF---FPVCIFRPSIVISTWKEPIPGWIDNLYGPT 331
RL + N E ++ EE + + RP + P + NL G
Sbjct: 147 RLKYMN------FYYDLEDIMLEEVEKKEGLTWSVHRPGNIFG----FSPYSMMNLVGTL 196
Query: 332 GLVTGAQAGVVRTFLVDPDVKA------DIVPADLVVNALICA 368
V A L KA D ADL+ I A
Sbjct: 197 C-VYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWA 238
Score = 32.8 bits (74), Expect = 0.25
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 19 LMTGATGFLGKLLIEKLLR--SFPRVKTIYVIVR 50
L+ G TG +G L E L + +Y + R
Sbjct: 5 LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR 38
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 49.9 bits (119), Expect = 1e-06
Identities = 48/302 (15%), Positives = 84/302 (27%), Gaps = 114/302 (37%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I++TGA GF+GK L L + I+ + Q+ ++ ++ L
Sbjct: 3 IVITGAKGFVGKNLKADLTST--TDHHIFEV----HRQTKEEELESALL----------- 45
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
K + + H A R + + KE N+ +LD+
Sbjct: 46 -----------------------KADFIVHLAGVNRPEHD-KEFSLGNVSYLDHVLDILT 81
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ S+S
Sbjct: 82 RNTKKPAILL-----SSS-------------IQA-------------------------T 98
Query: 280 NMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGA 337
N Y +K EQLL E A+ + V I+R NL+G
Sbjct: 99 QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWP---------------NLFGKWC--KPN 141
Query: 338 QAGVVRTF-----------LVDPDVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386
V+ TF + D +V+ + D +V + A + P+ ++
Sbjct: 142 YNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPTIENGVPTVPNVF 201
Query: 387 NY 388
Sbjct: 202 KV 203
Score = 30.3 bits (68), Expect = 1.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 18 ILMTGATGFLGKLLIEKLL 36
I++TGA GF+GK L L
Sbjct: 3 IVITGAKGFVGKNLKADLT 21
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 49.6 bits (119), Expect = 1e-06
Identities = 45/256 (17%), Positives = 79/256 (30%), Gaps = 69/256 (26%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIV------RAKKNQSPQQRIDKMLDTVAIS 153
IL+TG GF+G L + P+ K V+V + + + + +
Sbjct: 13 ILITGGAGFVGSNLAFHFQENHPKAK---VVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 154 LKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAA---TLRFDEELKEAIRTNMCA 210
+ A D+ D +RL + +FH AA T ++EL ++TN A
Sbjct: 70 GEV---------IAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQEL--VMKTNYQA 118
Query: 211 TQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270
+L++A+ K Y S+A +Y + P
Sbjct: 119 FLNLLEIARSKK--AKVIYASSA-G----------VYG--------------NTKAPN-- 149
Query: 271 ETRERLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGP 330
+ N Y +K ++ + + R N+YGP
Sbjct: 150 --VVGKNESPENVYGFSKLCMDEFVLSHSNDNVQVGLRYF---------------NVYGP 192
Query: 331 TGLVTGAQAGVVRTFL 346
A +V
Sbjct: 193 REFYKEKTASMVLQLA 208
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 48.5 bits (116), Expect = 2e-06
Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 66/234 (28%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGA G LG+++ E+L + + + SP + V L
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL----RLA----DLSPLDPAGPNEECVQCDLA---- 53
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
D + + + + + H + ++ ++ ++ N+ + + A+
Sbjct: 54 ---------D----ANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQGNIIGLYNLYEAAR 99
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ S+ HT P+ + +
Sbjct: 100 AH-GQPRIVFASS----------------NHTIG-----------YYPQTERLGPDVPAR 131
Query: 280 NMNTYTLTKAAAEQLLCEEAQFF------PVCIFRPSIVISTWKEP--IPGWID 325
Y ++K E L A+ + + R + W
Sbjct: 132 PDGLYGVSKCFGENL----ARMYFDKFGQETALVRIGSCTPEPNNYRMLSTWFS 181
Score = 34.3 bits (79), Expect = 0.072
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRV 42
+L+TGA G LG+++ E+L +
Sbjct: 6 LLVTGAAGQLGRVMRERLAPMAEIL 30
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 46.5 bits (111), Expect = 8e-06
Identities = 28/237 (11%), Positives = 53/237 (22%), Gaps = 79/237 (33%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGA G +G + L V R+ D V
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV-----------------RL---SDIV--------D 36
Query: 160 TSKESAQAP----DLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
A DL + + + H + + + ++ N+ +
Sbjct: 37 LGAAEAHEEIVACDL-ADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQANIIGAYNLY 94
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
+ A+ + S+ HT P+
Sbjct: 95 EAARNL-GKPRIVFASSN----------------HTIG-----------YYPRTTRIDTE 126
Query: 276 LSHENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGP 330
+ + Y L+K E L F R + +
Sbjct: 127 VPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIG---------------SCFPK 168
Score = 32.7 bits (75), Expect = 0.25
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRV 42
+L+TGA G +G + L V
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEV 29
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 46.9 bits (112), Expect = 8e-06
Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 40/162 (24%)
Query: 84 GTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP-QQR 142
G+ S P+ + + IL+TG TG GK + K+L + K I V R + QS
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDELKQSEMAME 66
Query: 143 IDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRL--VTSKVNLVFHCAATLRFDEEL 200
+ ++F +G D +RL V++ H AA L
Sbjct: 67 FNDP------RMRFF------------IGDVRDLERLNYALEGVDICIHAAA-------L 101
Query: 201 K----------EAIRTNMCATQTMLDLAKQCKNLKMFTYVST 232
K E I+TN+ +++ + + +ST
Sbjct: 102 KHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALST 142
Score = 36.1 bits (84), Expect = 0.022
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 2 GTSSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ 55
G+ S P+ + + IL+TG TG GK + K+L + K I V R + Q
Sbjct: 8 GSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTT-NAKKIIVYSRDELKQ 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 1e-05
Identities = 65/467 (13%), Positives = 135/467 (28%), Gaps = 148/467 (31%)
Query: 37 RSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYE 96
+ R++ + +A P + + I G
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNV-------------------LIDG------------ 157
Query: 97 GAEILMTGATGFLGK-LLIEKLLRSFPRVKT----IYVIVRAKKNQSPQQRIDKMLDTVA 151
+ G+ GK + + S+ I+ + K SP+ ++ +
Sbjct: 158 -----VLGS----GKTWVALDVCLSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQK--- 204
Query: 152 ISLKFTCSTSKESAQAPDLGLSPDD-----KRLVTSKVNLVFHCAATLRFDE-ELKEAIR 205
+ + + + S + ++ L +RL+ SK + L + +A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP----YENCLLVLLNVQNAKAWN 260
Query: 206 TNMCATQTMLDLAKQCKNLKMFT---YVSTAFSNSYRKNI--EEIIYKAHTHYSE--LLK 258
+L CK L + T V+ S + +I + + LLK
Sbjct: 261 A--------FNL--SCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 259 ISKLDVDD-PK-------------------YQETRERLSHENMNTYTLT-KAAAEQLLCE 297
D P+ T + H N + T +++ L
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 298 EAQ--FFPVCIFRPSIVISTWKEPIPG------WIDNLYGPTGLVTGAQAGVVRTFLVDP 349
E + F + +F PS IP W D + +V + + LV+
Sbjct: 370 EYRKMFDRLSVFPPSA-------HIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEK 419
Query: 350 DVKA------DI-------VPADLVVNALICAPWNGHERFHKDPSCLP-----IYNYV-- 389
K I + + ++ I +N + F D P Y+++
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 390 --NSKDNPLTWGE---------FITKSLK-EGVKIPSSQTRTNLLQD 424
+ ++P F+ + ++ + +S + N LQ
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Score = 38.7 bits (89), Expect = 0.006
Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 77/246 (31%)
Query: 343 RTFLVDPDVKADIV--P-----ADLVVNALICAPWNGHERFHKDPSCLPIYNYVNSKDNP 395
++ L ++ I+ + L+ ++F ++ + NY
Sbjct: 43 KSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINY------- 91
Query: 396 LTWGEFITKSLKEGVKIPS------SQTRTNLLQDGQ----GSV-RSRTIQYPGVGVGQL 444
+F+ +K + PS + R L D Q +V R + +L
Sbjct: 92 ----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-------KL 140
Query: 445 QRAV-HVDPSTR----GGPGS------ISVQYSGPRLGR-------LSAREWEWDNSNVQ 486
++A+ + P+ G GS + V S + L+ + + ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 487 SMWTLV-----PAGDRVRFPFNIRDL--DWDDYLR------AYVRGTLVHHLQDKLDPVT 533
+ L+ R NI+ LR Y LV L V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV------LLNVQ 254
Query: 534 RQKAWK 539
KAW
Sbjct: 255 NAKAWN 260
Score = 37.9 bits (87), Expect = 0.008
Identities = 68/442 (15%), Positives = 123/442 (27%), Gaps = 135/442 (30%)
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKL------------- 262
+ CK+++ + S + I+ II L L
Sbjct: 32 NF--DCKDVQDMP--KSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 263 DVDDPKYQETRERLSHENMNTYTLTKAAAEQL--LCEEAQFFP---VCIFRPSIVISTW- 316
+V Y+ + E +T+ EQ L + Q F V +P + +
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 317 KE--PIPGWIDNLYGPTGLVTGAQ---AGVVRTFLVDP---------DVKADIVPADLV- 361
E P + + G G +G V ++ V ++K P ++
Sbjct: 145 LELRPAKNVL--IDGVLG--SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 362 -VNALI-------CA--------PWNGHE------RFHKD---PSCLPIYNYVNSKDNPL 396
+ L+ + H R K +CL + V +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--- 257
Query: 397 TWGEF-------ITKSLKEGVKIPSSQTRTNL----LQDGQGSVRSRTI--QYPGVGVGQ 443
W F +T K+ S+ T T++ +++ +Y
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 444 LQRAVHVDPSTRGGPGSISVQYSGPRLGRLSAREWE-WDNSNV--------QSMWTLVPA 494
L R V P +S+ + A W+ W + N S+ L PA
Sbjct: 318 LPREVL-----TTNPRRLSI--IAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 495 GDRVRF------------PFNIRDLDWDD--------YLRAYVRGTLV-----------H 523
R F P + L W D + + +LV
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 524 HLQDKLDPVTRQKAWKRHRSLI 545
+ +L + HRS++
Sbjct: 430 SIYLELKVKLENEY-ALHRSIV 450
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 44.6 bits (106), Expect = 4e-05
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 27/138 (19%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTI-YVIVRAKKNQSPQQRIDKMLDTVAISLKFTC 158
IL+ GA G +G L +KL + + I I + + + +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVV------------ 52
Query: 159 STSKESAQAPDLGLSPDDKRLVTS-KVNLVFHCAATL--RFDEELKEAIRTNMCATQTML 215
+ + LV K+ ++ AA L ++ A NM + +L
Sbjct: 53 ----------NALDFNQIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVL 102
Query: 216 DLAKQCKNLKMFTYVSTA 233
+LAK +K + S+
Sbjct: 103 NLAKAK-KIKKIFWPSSI 119
Score = 30.7 bits (70), Expect = 1.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
IL+ GA G +G L +KL +
Sbjct: 5 ILIIGACGQIGTELTQKLRK 24
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 42.3 bits (100), Expect = 1e-04
Identities = 31/219 (14%), Positives = 61/219 (27%), Gaps = 78/219 (35%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+ GATG G+ L++++L P + + R + P+
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVG------------- 53
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEA---IRTNMCATQTMLD 216
L ++ F C T + +EA + ++ L
Sbjct: 54 ---------PLAELLPQLD---GSIDTAFCCLGTTIKEAGSEEAFRAVDFDLP-----LA 96
Query: 217 LAKQCK--NLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRE 274
+ K+ + + VS +++
Sbjct: 97 VGKRALEMGARHYLVVSALGADAKSSIF-------------------------------- 124
Query: 275 RLSHENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVI 313
Y K EQ L +E + + I RPS++
Sbjct: 125 ---------YNRVKGELEQAL-QEQGWPQLTIARPSLLF 153
Score = 40.0 bits (94), Expect = 8e-04
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNR 77
+L+ GATG G+ L++++L P + + R + P+ ++ +
Sbjct: 8 VLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVG-PLAELLPQLDGS 65
Query: 78 PNQTI--MGT--ASPPSLDDFY 95
+ +GT S + F
Sbjct: 66 IDTAFCCLGTTIKEAGSEEAFR 87
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 41.4 bits (98), Expect = 4e-04
Identities = 38/235 (16%), Positives = 66/235 (28%), Gaps = 77/235 (32%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I +TG TGFLG+ ++E + I+ + +
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTP-----II-----------LTRS------------I 36
Query: 160 TSKESAQAP-DLG-LSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDL 217
+K + + +D + V+ V H AAT ++ N TQ + D
Sbjct: 37 GNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGSQGKI-SEFHDNEILTQNLYDA 95
Query: 218 AKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLS 277
+ N+ Y ST S Y D E+
Sbjct: 96 CYEN-NISNIVYASTI-S----------AY-----------------SDETSLPWNEKEL 126
Query: 278 HENMNTYTLTKAAAEQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGP 330
Y ++K A E + ++ + R + +LYG
Sbjct: 127 PLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFA---------------HLYGF 166
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 40.4 bits (95), Expect = 7e-04
Identities = 32/236 (13%), Positives = 68/236 (28%), Gaps = 68/236 (28%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+ GA G + + L+ +L +VR + +Q ++ + A +
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPV---AMVR-----NEEQ-GPELRERGASDI----- 69
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCA-ATLRFDEELKEAIRTNMCATQTMLDLA 218
+ +D + ++ V A + + I ++ + A
Sbjct: 70 ---------VVANLEEDFSHAFASIDAVVFAAGSGPHTGADKTILI--DLWGAIKTIQEA 118
Query: 219 KQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSH 278
++ + +K F VS+ + DP
Sbjct: 119 EK-RGIKRFIMVSS-----------------------------VGTVDP-------DQGP 141
Query: 279 ENMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVIS---TWKEPIPGWIDNLYGPT 331
NM Y + K A+ L + I RP + + T K + +
Sbjct: 142 MNMRHYLVAKRLADDEL--KRSSLDYTIVRPGPLSNEESTGKVTVSPHFSEITRSI 195
Score = 32.7 bits (75), Expect = 0.23
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 21/95 (22%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNR 77
+L+ GA G + + L+ +L +VR + +Q + +R R
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPV---AMVR-----NEEQGPE-----------LRER 64
Query: 78 PNQTIMGTASPPSLDDFYEGAE--ILMTGATGFLG 110
I+ + + + G+ G
Sbjct: 65 GASDIVVANLEEDFSHAFASIDAVVFAAGSGPHTG 99
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 38.5 bits (90), Expect = 0.003
Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 58/216 (26%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I++ GA+GF+G L+ + L V +VR P ++I + + +
Sbjct: 7 IVLIGASGFVGSALLNEALNRGFEVT---AVVR-----HP-EKIKIENEHLKV------- 50
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+A D+ S D+ V + V + ++ + T++D K
Sbjct: 51 -----KKA-DV-SSLDEVCEVCKGADAVISAFNPGWNNPDI---YDETIKVYLTIIDGVK 100
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ + F V A S +D + E
Sbjct: 101 KAG-VNRFLMVGGAGSLFIAPG-------------------LRLMDSGEVPE-------- 132
Query: 280 NMNTYTLTKAAAEQLLCEEAQF--FPVCIFRPSIVI 313
N KA E L + F P+ +
Sbjct: 133 --NILPGVKALGEFYLNFLMKEKEIDWVFFSPAADM 166
Score = 32.8 bits (75), Expect = 0.21
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I++ GA+GF+G L+ + L
Sbjct: 7 IVLIGASGFVGSALLNEALN 26
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 39.0 bits (91), Expect = 0.003
Identities = 30/236 (12%), Positives = 74/236 (31%), Gaps = 55/236 (23%)
Query: 83 MGTASPPSLD-DFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQ 141
MGT + + ++L+ G GF+G L +++L + ++ + +
Sbjct: 9 MGTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWE--VFGM-----DMQT-D 60
Query: 142 RIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFH--CAAT-LRFDE 198
R+ ++ + D+ ++ + K +++ AT + +
Sbjct: 61 RLGDLVKHERMHFF-----------EGDITINKEWVEYHVKKCDVILPLVAIATPATYVK 109
Query: 199 ELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLK 258
+ + A ++ A + K + ST S Y
Sbjct: 110 QPLRVFELDFEANLPIVRSAVKYG--KHLVFPST--SEVYGMC----------------- 148
Query: 259 ISKLDVDDPKYQETRERLSHENMNT----YTLTKAAAEQLLCEEAQF-FPVCIFRP 309
D ++ L++ +N Y +K ++++ +FRP
Sbjct: 149 ------ADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRP 198
Score = 31.7 bits (72), Expect = 0.59
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 1 MGTSSPPSLD-DFYEGAEILMTGATGFLGKLLIEKLLR 37
MGT + + ++L+ G GF+G L +++L
Sbjct: 9 MGTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILE 46
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 37.7 bits (88), Expect = 0.005
Identities = 38/269 (14%), Positives = 81/269 (30%), Gaps = 87/269 (32%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I + G+TG +GK L++ L IY R +Q + + + A+
Sbjct: 3 IFIVGSTGRVGKSLLKSLST---TDYQIYAGAR-----KVEQ-VPQYNNVKAVHF----- 48
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
D+ +P++ ++ + + + + K ++ ++ ++ A+
Sbjct: 49 ---------DVDWTPEEMAKQLHGMDAIINVSGSGG-----KSLLKVDLYGAVKLMQAAE 94
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHE 279
+ +K F +ST FS K I +
Sbjct: 95 K-AEVKRFILLSTIFSLQPEKWIGAGF--------------------------------D 121
Query: 280 NMNTYTLTKAAAEQLLCEEAQFFPVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQA 339
+ Y + K A+ L +E I +P L
Sbjct: 122 ALKDYYIAKHFADLYLTKETN-LDYTIIQPG---------------------ALTEEEAT 159
Query: 340 GVVRTFLVDPDVKADIVPADLVVNALICA 368
G++ ++ +V A D V + +
Sbjct: 160 GLID---INDEVSASNTIGD-VADTIKEL 184
Score = 32.7 bits (75), Expect = 0.19
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I + G+TG +GK L++ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 38.0 bits (89), Expect = 0.005
Identities = 49/262 (18%), Positives = 79/262 (30%), Gaps = 80/262 (30%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+TG GF+G L+E LL+ V+ +D +L S
Sbjct: 30 WLITGVAGFIGSNLLETLLK-----LDQKVVG-----------LDNFATGHQRNLDEVRS 73
Query: 160 TSKESAQAP------DLGLSPDDKRLVTSKVNLVFHCAATLRFDEELK---EAIRTNMCA 210
E + D+ + DD + V+ V H AA + + TN+
Sbjct: 74 LVSEKQWSNFKFIQGDI-RNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDG 132
Query: 211 TQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQ 270
ML A+ ++ FTY +++ S Y H L + + P
Sbjct: 133 FLNMLIAARDA-KVQSFTYAASS-S----------TYGDHPG----LPKVEDTIGKP--- 173
Query: 271 ETRERLSHENMNTYTLTKAAAEQLLCEEAQFF------PVCIFRPSIVISTWKEPIPGWI 324
++ Y +TK E A F R
Sbjct: 174 ----------LSPYAVTKYVNELY----ADVFSRCYGFSTIGLRYF-------------- 205
Query: 325 DNLYGPTGLVTGAQAGVVRTFL 346
N++G GA A V+ +
Sbjct: 206 -NVFGRRQDPNGAYAAVIPKWT 226
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 38.0 bits (89), Expect = 0.006
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 22/198 (11%)
Query: 96 EGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLK 155
EG+ +L+TGA GF+ ++E+LL +V+ R + S + K D +
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRG---TAR---SASKLANLQKRWDAKYPG-R 62
Query: 156 FTCSTSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTML 215
F E+A D+ L V V H A+ + F + E + + T L
Sbjct: 63 F------ETAVVEDM-LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNAL 115
Query: 216 DLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRER 275
A ++K F S+ S K E IY ++ K + E
Sbjct: 116 RAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWN--------LESIDKAKTLPES 167
Query: 276 LSHENMNTYTLTKAAAEQ 293
+++ Y +K AE
Sbjct: 168 DPQKSLWVYAASKTEAEL 185
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 14 EGAEILMTGATGFLGKLLIEKLL 36
EG+ +L+TGA GF+ ++E+LL
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLL 32
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 37.8 bits (88), Expect = 0.007
Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 40/183 (21%)
Query: 68 VAIIELI-RNRPNQTIMGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRV-- 124
+I+ LI R+ A+ L + L+ G G +G+ + +++ + P+
Sbjct: 5 NSILSLIGRDTELFHQDINANEKELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLH 64
Query: 125 ------KTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDDKR 178
+ +VR ++ D T A+ + +
Sbjct: 65 VVDISENNMVELVRDIRSSFGYINGD--FQTFALDIG-------------------SIEY 103
Query: 179 LV----TSKVNLVFHCAA-----TLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTY 229
+ + V + +A + + L I N+ T + + K +
Sbjct: 104 DAFIKADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDA-GAKKYFC 162
Query: 230 VST 232
VST
Sbjct: 163 VST 165
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 36.8 bits (85), Expect = 0.012
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
+L+TGA+G G+++ +KL + +VR
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVR 38
Score = 36.8 bits (85), Expect = 0.012
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132
+L+TGA+G G+++ +KL + +VR
Sbjct: 7 VLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVR 38
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 36.6 bits (84), Expect = 0.019
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 1 MGTSSPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR-AKKNQSPQQ 59
M S PS +L+ GATGF+G+ + L + + Y++ R ++ S +
Sbjct: 1 MTVSPVPS-----PKGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAK 52
Query: 60 RIDKMLDTVAII 71
+ D AII
Sbjct: 53 IFKALEDKGAII 64
Score = 35.0 bits (80), Expect = 0.050
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 83 MGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQR 142
M + PS +L+ GATGF+G+ + L + + Y++ R + +
Sbjct: 1 MTVSPVPS-----PKGRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAK 52
Query: 143 IDKMLDTVAISLKFTCSTSKES 164
I K L+ + + +E+
Sbjct: 53 IFKALEDKGAIIVYGLINEQEA 74
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 35.7 bits (83), Expect = 0.029
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
I +TGATG LG +IE L+++ P + I IVR
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQ-IVAIVR 33
Score = 35.7 bits (83), Expect = 0.029
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132
I +TGATG LG +IE L+++ P + I IVR
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQ-IVAIVR 33
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 35.8 bits (83), Expect = 0.032
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQ-----SPQQRIDKMLDTV-AII 71
+ +TG+ G +G+ L +L + +VR + P +LD ++
Sbjct: 150 VAITGSRGLVGRALTAQLQT---GGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLV 206
Query: 72 EL 73
L
Sbjct: 207 HL 208
Score = 35.8 bits (83), Expect = 0.033
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 60 RIDKMLDTVAIIELIRNRPNQTIMGTASPPSLDDFYEGAE--ILMTGATGFLGKLLIEKL 117
+ L + + R Q I ++G+ + +TG+ G +G+ L +L
Sbjct: 108 SVSTRLPASTLTGMFAYRQTQLIEDLKFLSRTSTLFDGSPLTVAITGSRGLVGRALTAQL 167
Query: 118 LRSFPRVKTIYVIVR 132
+ +VR
Sbjct: 168 QT---GGHEVIQLVR 179
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 35.3 bits (82), Expect = 0.033
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
I++TGATG LG + + + + + ++ VR
Sbjct: 3 IMLTGATGHLGTHITNQAIAN--HIDHFHIGVR 33
Score = 35.3 bits (82), Expect = 0.033
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132
I++TGATG LG + + + + + ++ VR
Sbjct: 3 IMLTGATGHLGTHITNQAIAN--HIDHFHIGVR 33
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 35.3 bits (82), Expect = 0.041
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
I +TGATG LG L+I+ LL+ P + I IVR
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVR 34
Score = 35.3 bits (82), Expect = 0.041
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132
I +TGATG LG L+I+ LL+ P + I IVR
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQ-IIAIVR 34
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 34.2 bits (78), Expect = 0.067
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I + GATG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
Score = 34.2 bits (78), Expect = 0.067
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 100 ILMTGATGFLGKLLIEKLLR 119
I + GATG G ++ + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 34.5 bits (79), Expect = 0.077
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
IL+ GATG++G+ + + L +++VR
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHPT---FLLVR 36
Score = 34.5 bits (79), Expect = 0.077
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132
IL+ GATG++G+ + + L +++VR
Sbjct: 7 ILLIGATGYIGRHVAKASLDLGHPT---FLLVR 36
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 34.1 bits (78), Expect = 0.092
Identities = 15/102 (14%), Positives = 40/102 (39%), Gaps = 13/102 (12%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIRNR 77
IL+ G TG +G+ ++ +++ Y +VR + + ++++D ++
Sbjct: 5 ILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDN------YQSL 55
Query: 78 PNQTIMGT-ASPPSLDDFYEGAE--ILMTGATGFLGKL-LIE 115
+ G +L + + I G ++ +I+
Sbjct: 56 GVILLEGDINDHETLVKAIKQVDIVICAAGRLLIEDQVKIIK 97
Score = 34.1 bits (78), Expect = 0.094
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDT 149
IL+ G TG +G+ ++ +++ Y +VR + + ++++D
Sbjct: 5 ILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDN 51
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 33.4 bits (77), Expect = 0.10
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 30/167 (17%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I + GATG G + + +++ V V+VR R+ A
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVT---VLVR-----DS-SRLPSEGPRPA-------- 48
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
D+ L D + + V T + ++ K
Sbjct: 49 ---HVVVG-DV-LQAADVDKTVAGQDAVIVLLGTRN----DLSPTTVMSEGARNIVAAMK 99
Query: 220 QCKNLKMFTYVSTAFSNSYRKNIEEI---IYKAHTHYSELLKISKLD 263
+ ++AF + + H ++L+ S L
Sbjct: 100 A-HGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLK 145
Score = 31.9 bits (73), Expect = 0.32
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I + GATG G + + ++
Sbjct: 6 IAIFGATGQTGLTTLAQAVQ 25
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 33.4 bits (76), Expect = 0.12
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I + GATG G ++E+
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
Score = 33.4 bits (76), Expect = 0.12
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 100 ILMTGATGFLGKLLIEKLLR 119
I + GATG G ++E+
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 33.8 bits (78), Expect = 0.13
Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 52/169 (30%)
Query: 183 KVNLVFHCAA---TLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYR 239
V +FH A T +D + + N ++ +L + + F Y S+A
Sbjct: 115 DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLERE--IPFLYASSA------ 164
Query: 240 KNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEEA 299
Y R + +N + +K ++ + +
Sbjct: 165 -----ATY-----------------GGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQIL 202
Query: 300 QFF--PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFL 346
+ FR N+YGP G+ A V
Sbjct: 203 PEANSQIVGFRYF---------------NVYGPREGHKGSMASVAFHLN 236
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 33.1 bits (75), Expect = 0.18
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I + GA G + + L LL
Sbjct: 8 ITILGAAGQIAQXLTATLLT 27
Score = 33.1 bits (75), Expect = 0.18
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 100 ILMTGATGFLGKLLIEKLLR 119
I + GA G + + L LL
Sbjct: 8 ITILGAAGQIAQXLTATLLT 27
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 33.0 bits (75), Expect = 0.21
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP 57
+L+ G TG++GK ++ + YV+ R + +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNI 43
Score = 33.0 bits (75), Expect = 0.21
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP 139
+L+ G TG++GK ++ + YV+ R + +
Sbjct: 7 VLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNI 43
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 32.5 bits (74), Expect = 0.26
Identities = 19/172 (11%), Positives = 50/172 (29%), Gaps = 41/172 (23%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+ GA G + + +I +L + + R P +
Sbjct: 26 VLILGAGGQIARHVINQLADK--QTIKQTLFAR-----QPAKIHKPYPTNS--------- 69
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFDEELKEAIRTNMCATQTMLDLAK 219
+ D+ L+ + ++V+ D + +++ K
Sbjct: 70 ---QIIMG-DV-LNHAALKQAMQGQDIVYANLTGEDLDIQ-----------ANSVIAAMK 113
Query: 220 QCKNLKMFTYVSTAFSN--------SYRKNIEEIIYKAHTHYSELLKISKLD 263
C ++K +V + + + K ++ ++ S L+
Sbjct: 114 AC-DVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLE 164
Score = 32.1 bits (73), Expect = 0.39
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 18 ILMTGATGFLGKLLIEKLL 36
+L+ GA G + + +I +L
Sbjct: 26 VLILGAGGQIARHVINQLA 44
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 32.6 bits (75), Expect = 0.28
Identities = 26/170 (15%), Positives = 47/170 (27%), Gaps = 52/170 (30%)
Query: 182 SKVNLVFHCAA---TLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTAFSNSY 238
V +FH A T +D + + N ++ +L + + + F Y S+A
Sbjct: 67 GDVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLE-REIP-FLYASSA----- 117
Query: 239 RKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLLCEE 298
Y R + +N Y +K ++ + +
Sbjct: 118 ------ATY-----------------GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQI 154
Query: 299 AQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFL 346
+ FR N+YGP G+ A V
Sbjct: 155 LPEANSQIVGFRYF---------------NVYGPREGHKGSMASVAFHLN 189
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 32.6 bits (74), Expect = 0.29
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP 57
I++ G TG++GK ++ L ++ R S
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHPT---FIYARPLTPDST 43
Score = 32.6 bits (74), Expect = 0.29
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSP 139
I++ G TG++GK ++ L ++ R S
Sbjct: 7 IIIYGGTGYIGKFMVRASLSFSHPT---FIYARPLTPDST 43
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 32.5 bits (75), Expect = 0.30
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 204 IRTNMCATQTMLDLAKQCKNLKMFTYVST 232
+ +N+ T T+L+ ++ F +VST
Sbjct: 99 LHSNVIGTYTLLESIRRENPEVRFVHVST 127
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 32.3 bits (74), Expect = 0.34
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 27/138 (19%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
I +TGA GF+ + +L + YVI D
Sbjct: 32 ISITGAGGFIASHIARRLKH-----EGHYVIA---------------SDWKKNEHMTEDM 71
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAAT---LRFDEELK-EAIRTNMCATQTML 215
E DL + ++ VT V+ VF+ AA + F + + N + M+
Sbjct: 72 FCDEFHLV-DLRV-MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMI 129
Query: 216 DLAKQCKNLKMFTYVSTA 233
+ A+ + F Y S+A
Sbjct: 130 EAARINGIKRFF-YASSA 146
Score = 30.0 bits (68), Expect = 2.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
I +TGA GF+ + +L
Sbjct: 32 ISITGAGGFIASHIARRLKH 51
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 32.2 bits (73), Expect = 0.38
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 18 ILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRA 51
IL+ G TG++G +++ L+ P YV R
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHP----TYVFTRP 44
Score = 32.2 bits (73), Expect = 0.38
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 100 ILMTGATGFLGKLLIEKLLRS-FPRVKTIYVIVRA 133
IL+ G TG++G +++ L+ P YV R
Sbjct: 14 ILIFGGTGYIGNHMVKGSLKLGHP----TYVFTRP 44
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 32.4 bits (74), Expect = 0.40
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 24/136 (17%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+ G GF+G L E+LLR +Y + I + L+
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDA------ISRFLNHPHFHFVEG-- 52
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFH--CAAT-LRFDEELKEAIRTNMCATQTMLD 216
D+ + + K ++V AT + + + ++
Sbjct: 53 ---------DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 103
Query: 217 LAKQCKNLKMFTYVST 232
+ + K + ST
Sbjct: 104 YCVKYR--KRIIFPST 117
Score = 31.2 bits (71), Expect = 0.86
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
+L+ G GF+G L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 31.8 bits (73), Expect = 0.54
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 35/137 (25%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
+L+TGATG LG+ + + F + V ++ + ++++ +LD+ A+
Sbjct: 5 VLVTGATGLLGR----AVHKEFQQNNWHAVGCGFRRARPKFEQVN-LLDSNAVHHII--- 56
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLD 216
P ++ HCAA R D + A + N+ A+
Sbjct: 57 ----HDFQPH----------------VIVHCAAERRPDVVENQPDAASQLNVDASGN--- 93
Query: 217 LAKQCKNLK-MFTYVST 232
LAK+ + Y+S+
Sbjct: 94 LAKEAAAVGAFLIYISS 110
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 31.8 bits (73), Expect = 0.56
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 1 MGTSSPPSLDDFYEGAEILMTGATGFLGKLLIEKLL 36
M T P + G TGF+ LL++ LL
Sbjct: 1 MATQHPIG------KKTACVVGGTGFVASLLVKLLL 30
Score = 31.8 bits (73), Expect = 0.59
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 83 MGTASPPSLDDFYEGAEILMTGATGFLGKLLIEKLL 118
M T P + G TGF+ LL++ LL
Sbjct: 1 MATQHPIG------KKTACVVGGTGFVASLLVKLLL 30
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 31.7 bits (73), Expect = 0.57
Identities = 25/140 (17%), Positives = 39/140 (27%), Gaps = 35/140 (25%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
IL+TG GF+G L L+ S V V +D +
Sbjct: 10 ILITGGAGFIGGHLARALVASGEE-----VTV-----------LDDL------------R 41
Query: 160 TSKESAQAPDLGLSPDDK----RLVTSKVNLVFHCAATLRFDEELKEAIRT--NMCATQT 213
S V LV+H A+ K+ + N+ + +
Sbjct: 42 VPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRH 101
Query: 214 MLDLAKQCKNLKMFTYVSTA 233
+L L + ST
Sbjct: 102 LLALCTSV-GVPKVVVGSTC 120
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
furiosus}
Length = 345
Score = 31.6 bits (71), Expect = 0.64
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 22/107 (20%)
Query: 197 DEELKEAIRTNMC----ATQTMLDLAKQCKNLKMFTYVSTAFSNSYRKNIEEIIYKAHTH 252
EEL E +R + A +A+ ++ + RK + ++ + H
Sbjct: 17 KEELMEILRLAIIAELDAINLYEQMARYSEDENV------------RKILLDVAREEKAH 64
Query: 253 YSELLK-ISKLDVDDPKY-----QETRERLSHENMNTYTLTKAAAEQ 293
E + + LD + +E +E E + + +
Sbjct: 65 VGEFMALLLNLDPEQVTELKGGFEEVKELTGIEAHINDNKKEESNVE 111
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 31.4 bits (72), Expect = 0.70
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 312 VISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDPDVKADI 355
V T + W+ G G G ++ FL++P V
Sbjct: 74 VNLTLDG-VKSWLKPRLGQE-ATVGKATGFLKNFLIEPFVPHSQ 115
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 31.4 bits (72), Expect = 0.78
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 204 IRTNMCATQTMLDLAKQCKNLKMFTYVST 232
N+ T +L+ +Q + Y ST
Sbjct: 97 FEINVGGTLNLLEAVRQYNSNCNIIYSST 125
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 30.9 bits (70), Expect = 1.0
Identities = 15/142 (10%), Positives = 32/142 (22%), Gaps = 23/142 (16%)
Query: 187 VFHCAATLRFDE---ELKEAIRT---NMCATQTMLDLAKQCKNLKMFTYVSTAFSNSYRK 240
V H + A+ T N+ T +L K+ + T Y
Sbjct: 104 VVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM--GEYG- 160
Query: 241 NIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAAEQLL--CEE 298
+ + + + + + Y L+K + +
Sbjct: 161 ---------TPNIDIEEGYITITHNGRTDTLPYPK---QASSFYHLSKVHDSHNIAFTCK 208
Query: 299 AQFFPVCIFRPSIVISTWKEPI 320
A +V +
Sbjct: 209 AWGIRATDLNQGVVYGVKTDET 230
>2x0c_A Talin-1; cytoskeleton, cell membrane, actin, synemin, integrin,
vincu cell adhesion, cell projection; 2.00A {Mus
musculus} PDB: 1zw3_B
Length = 309
Score = 30.6 bits (68), Expect = 1.2
Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 19/160 (11%)
Query: 132 RAKKNQSPQQRIDKMLDTVAISLKFTCSTSKESAQAPDLGLSPDD-----KRLVTSKVNL 186
+ Q ++ VA C++ + ++ + K + S NL
Sbjct: 130 SLGEPGCTQAQVLSAATIVAKHTSALCNSCRLASARTANPTAKRQFVQSAKEVANSTANL 189
Query: 187 VFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTY------VSTAFSNSYRK 240
V D + E R L + NL F V S R
Sbjct: 190 V---KTIKALDGDFTEENRAQC--RAATAPLLEAVDNLSAFASNPEFSSVPAQISPEGRA 244
Query: 241 NIEEIIYKAHT---HYSELLKISKLDVDDPKYQETRERLS 277
+E I+ A T L++ ++ +P+ L+
Sbjct: 245 AMEPIVISAKTMLESAGGLIQTARALAVNPRDPPRWSVLA 284
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 30.6 bits (69), Expect = 1.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 11 DFYEGAEILMTGATGFLG 28
F++G + +TG TGF G
Sbjct: 5 SFWQGKRVFVTGHTGFKG 22
Score = 30.6 bits (69), Expect = 1.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 93 DFYEGAEILMTGATGFLG 110
F++G + +TG TGF G
Sbjct: 5 SFWQGKRVFVTGHTGFKG 22
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 18 ILMTGATGFLGKLLIEKLL 36
+ +TG TGFLG +I+ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLL 22
Score = 30.3 bits (69), Expect = 1.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 100 ILMTGATGFLGKLLIEKLL 118
+ +TG TGFLG +I+ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLL 22
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 30.3 bits (69), Expect = 1.6
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 187 VFHCAATLRFDEELKEAIRTNMCATQTMLDLAKQCKNLKMFTYVSTA 233
V H AA+ + ++ TN ++ AK+ N+ F Y TA
Sbjct: 93 VVHTAASYKDPDDWYNDTLTNCVGGSNVVQAAKKN-NVGRFVYFQTA 138
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 30.2 bits (69), Expect = 1.6
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 36/137 (26%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAISLKFTCS 159
L+TGA+G LG +L R + + + + Q + LD +
Sbjct: 3 TLITGASGQLGI----ELSRLLSERHEVIKVYNSSEIQGGYK-----LD---L------- 43
Query: 160 TSKESAQAPDLGLSPDDKRLVTSKVNLVFHCAATLRFD---EELKEAIRTNMCATQTMLD 216
T + + PD ++ + AA D E ++A + N A +
Sbjct: 44 TDFPRLEDFIIKKRPD----------VIINAAAMTDVDKCEIEKEKAYKINAEAVRH--- 90
Query: 217 LAKQCKNLK-MFTYVST 232
+ + K + ++ST
Sbjct: 91 IVRAGKVIDSYIVHIST 107
Score = 27.5 bits (62), Expect = 9.9
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVRAKKNQSPQQRIDKMLDTVAIIELIR-N 76
L+TGA+G LG +L R + + + + Q + +D + D + + I
Sbjct: 3 TLITGASGQLGI----ELSRLLSERHEVIKVYNSSEIQGGYK-LD-LTDFPRLEDFIIKK 56
Query: 77 RPN 79
RP+
Sbjct: 57 RPD 59
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 29.9 bits (68), Expect = 2.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 14 EGAEILMTGATGFLGKLLIEKLL 36
+ + +TGA+GF+G L+ +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
Score = 29.9 bits (68), Expect = 2.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 96 EGAEILMTGATGFLGKLLIEKLL 118
+ + +TGA+GF+G L+ +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 2.2
Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 54/153 (35%)
Query: 13 YEGAEILMTGAT-GFLGKLLIEKLLRSFPRV---------------KTIY---------- 46
++ +L+TGA G +G +++ LL+ +V ++IY
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTL 533
Query: 47 VIVRAKKNQSPQQRIDKMLDTVAIIELIRNRPNQTIMG--------TASPPS----LDDF 94
++V NQ +Q ++ A+IE I + +G A+ P L+
Sbjct: 534 IVVPF--NQGSKQDVE------ALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHI 585
Query: 95 YEGAEILMTGATGFLGKLLIEKLLRSFPRVKTI 127
+E ++++ +LR VK
Sbjct: 586 DSKSEFAH--------RIMLTNILRMMGCVKKQ 610
>2h1c_A Trafficking protein B; DNA binding, PIN domain, RHH domain, gene
regulation; 1.80A {Neisseria gonorrhoeae} SCOP:
c.120.1.1 PDB: 2bsq_A* 2h1o_A*
Length = 139
Score = 28.7 bits (63), Expect = 2.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 64 MLDTVAIIELIRNRPNQTIM 83
+LDT I E +R +PN+ ++
Sbjct: 3 LLDTNVISEPLRPQPNERVV 22
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.4 bits (67), Expect = 3.2
Identities = 34/217 (15%), Positives = 60/217 (27%), Gaps = 81/217 (37%)
Query: 175 DDKRLVTSKVNLVFHCAATLRFDEELKE---AIRTNMCATQTMLDLAKQCKNLKMFTYVS 231
D K ++VFH AA E N+ AT +L+ A+Q ++ + S
Sbjct: 54 DYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFAS 112
Query: 232 TAFSNSYRKNIEEIIYKAHTHYSELLKISKLDVDDPKYQETRERLSHENMNTYTLTKAAA 291
++ +Y D T E ++ ++ Y KAA
Sbjct: 113 SS-----------TVY-----------------GDADVIPTPEEEPYKPISVYGAAKAAG 144
Query: 292 EQLLCEEAQFF--PVCIFRPSIVISTWKEPIPGWIDNLYGPTGLVTGAQAGVVRTFLVDP 349
E + A+ F R + N+ GP
Sbjct: 145 EVMCATYARLFGVRCLAVRYA---------------NVVGPRL---------------RH 174
Query: 350 DVKADIVPADLVVNALICAPWNGHERFHKDPSCLPIY 386
V D + + ++P+ L +
Sbjct: 175 GVIYDFIM-----------------KLRRNPNVLEVL 194
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 29.0 bits (66), Expect = 3.6
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 204 IRTNMCATQTMLDLAKQCKNLKMFTYVST 232
TN+ T T+L+L K+ ++K VST
Sbjct: 122 YDTNVIGTVTLLELVKKYPHIK-LVQVST 149
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA
complex, protein-DNA complex; HET: DNA MES; 2.50A
{Rickettsia felis}
Length = 134
Score = 27.9 bits (61), Expect = 4.9
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 64 MLDTVAIIELIRNRPN 79
ML T + I P+
Sbjct: 4 MLGTNICVYAINKHPD 19
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 28.6 bits (65), Expect = 5.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 204 IRTNMCATQTMLDLAKQCKNLKMFTYVST 232
TN+ TQT+L A + +VST
Sbjct: 100 TETNVQGTQTLLQCAVDAGVGR-VVHVST 127
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain,
spovt/ABRB-like domain, ribonuclease, DNA-bindin
translation; 2.70A {Shigella flexneri}
Length = 132
Score = 27.6 bits (60), Expect = 6.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 64 MLDTVAIIELIRNRP 78
MLDT I I+N+P
Sbjct: 5 MLDTNICIFTIKNKP 19
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 28.5 bits (64), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 18 ILMTGATGFLGKLLIEKLLR 37
IL+TG GF+G L +KL+
Sbjct: 30 ILITGGAGFVGSHLTDKLMM 49
Score = 28.5 bits (64), Expect = 6.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 100 ILMTGATGFLGKLLIEKLLR 119
IL+TG GF+G L +KL+
Sbjct: 30 ILITGGAGFVGSHLTDKLMM 49
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 28.1 bits (63), Expect = 7.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 18 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 50
+++ G TG G + LL K + V+ R
Sbjct: 8 VVVFGGTGAQGGSVARTLLED-GTFK-VRVVTR 38
Score = 28.1 bits (63), Expect = 7.6
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 100 ILMTGATGFLGKLLIEKLLRSFPRVKTIYVIVR 132
+++ G TG G + LL K + V+ R
Sbjct: 8 VVVFGGTGAQGGSVARTLLED-GTFK-VRVVTR 38
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 27.9 bits (62), Expect = 9.6
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 18 ILMTGATGFLGKLLIEKLLRS 38
I + GATG G LI
Sbjct: 8 IAVVGATGRQGASLIRVAAAV 28
Score = 27.9 bits (62), Expect = 9.6
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 100 ILMTGATGFLGKLLIEKLLRS 120
I + GATG G LI
Sbjct: 8 IAVVGATGRQGASLIRVAAAV 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.405
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,558,544
Number of extensions: 524705
Number of successful extensions: 1458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1426
Number of HSP's successfully gapped: 146
Length of query: 545
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 447
Effective length of database: 3,965,535
Effective search space: 1772594145
Effective search space used: 1772594145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)