Query psy16255
Match_columns 156
No_of_seqs 212 out of 1504
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:45:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02649 true_RNase_BN ribonu 99.9 1.3E-26 2.7E-31 186.2 13.3 121 34-154 1-143 (303)
2 TIGR02651 RNase_Z ribonuclease 99.9 3.7E-26 8E-31 182.5 13.8 122 33-154 1-141 (299)
3 COG1234 ElaC Metal-dependent h 99.9 1E-24 2.2E-29 174.7 13.8 118 31-154 1-136 (292)
4 PRK02113 putative hydrolase; P 99.9 8.6E-24 1.9E-28 165.3 13.6 115 32-151 1-152 (252)
5 PRK05184 pyrroloquinoline quin 99.9 7.1E-24 1.5E-28 170.6 13.2 116 32-153 1-165 (302)
6 PRK00055 ribonuclease Z; Revie 99.9 4.9E-23 1.1E-27 161.5 10.2 88 31-118 1-94 (270)
7 PRK11244 phnP carbon-phosphoru 99.9 6.9E-21 1.5E-25 149.0 13.0 114 32-153 1-144 (250)
8 TIGR02108 PQQ_syn_pqqB coenzym 99.8 1.3E-20 2.7E-25 151.7 12.3 113 33-151 1-162 (302)
9 PRK02126 ribonuclease Z; Provi 99.8 8.4E-18 1.8E-22 137.0 12.2 117 31-154 4-166 (334)
10 TIGR03307 PhnP phosphonate met 99.7 8.5E-17 1.8E-21 125.0 11.4 103 43-153 25-134 (238)
11 TIGR00649 MG423 conserved hypo 99.7 1.5E-16 3.2E-21 133.2 10.9 118 32-154 1-140 (422)
12 PRK04286 hypothetical protein; 99.7 3.1E-16 6.7E-21 126.1 8.7 121 32-153 1-161 (298)
13 PRK00685 metal-dependent hydro 99.6 1.7E-15 3.7E-20 116.4 9.8 107 32-154 1-113 (228)
14 TIGR03675 arCOG00543 arCOG0054 99.6 1.1E-14 2.4E-19 127.2 11.4 121 28-153 171-326 (630)
15 PF12706 Lactamase_B_2: Beta-l 99.6 4E-15 8.7E-20 111.0 7.4 96 56-154 2-116 (194)
16 TIGR02650 RNase_Z_T_toga ribon 99.6 3.8E-15 8.2E-20 118.0 6.5 110 38-152 4-135 (277)
17 PF13691 Lactamase_B_4: tRNase 99.6 9.7E-15 2.1E-19 91.3 6.6 60 35-94 1-63 (63)
18 COG0595 mRNA degradation ribon 99.5 3.1E-14 6.6E-19 122.3 10.4 118 30-155 7-149 (555)
19 smart00849 Lactamase_B Metallo 99.5 8.1E-14 1.7E-18 102.2 10.4 98 43-148 4-120 (183)
20 COG1235 PhnP Metal-dependent h 99.5 2.6E-13 5.6E-18 107.5 9.8 120 30-155 2-142 (269)
21 COG1237 Metal-dependent hydrol 99.5 3.8E-13 8.2E-18 104.9 9.0 70 45-118 22-94 (259)
22 KOG2121|consensus 99.4 6E-14 1.3E-18 121.5 3.5 90 29-118 440-545 (746)
23 TIGR03413 GSH_gloB hydroxyacyl 99.3 2.1E-11 4.5E-16 95.7 10.7 94 46-151 11-108 (248)
24 PRK11921 metallo-beta-lactamas 99.3 2.7E-11 5.8E-16 100.8 9.9 101 44-151 32-144 (394)
25 PRK10241 hydroxyacylglutathion 99.2 1.3E-10 2.9E-15 91.3 11.4 107 32-151 1-111 (251)
26 COG1236 YSH1 Predicted exonucl 99.2 2.5E-11 5.5E-16 102.0 7.5 116 32-152 1-144 (427)
27 PRK11709 putative L-ascorbate 99.2 1.4E-10 3E-15 95.4 11.6 116 28-151 34-185 (355)
28 PF00753 Lactamase_B: Metallo- 99.2 1.8E-11 4E-16 89.3 4.6 57 45-101 6-66 (194)
29 TIGR00361 ComEC_Rec2 DNA inter 99.1 1.1E-09 2.4E-14 96.6 13.7 105 30-147 438-552 (662)
30 PLN02469 hydroxyacylglutathion 99.1 1.3E-09 2.9E-14 86.0 11.7 103 32-148 1-109 (258)
31 PRK05452 anaerobic nitric oxid 99.1 8.2E-10 1.8E-14 94.2 10.5 101 44-151 34-148 (479)
32 PLN02398 hydroxyacylglutathion 99.0 6.8E-09 1.5E-13 84.6 13.1 107 31-151 75-188 (329)
33 COG1782 Predicted metal-depend 99.0 7.7E-10 1.7E-14 93.2 7.5 86 28-118 177-269 (637)
34 PLN02962 hydroxyacylglutathion 98.9 3.2E-08 6.9E-13 78.0 12.2 107 29-148 8-122 (251)
35 KOG1136|consensus 98.9 3.6E-09 7.9E-14 85.6 6.5 74 31-104 3-86 (501)
36 PRK11539 ComEC family competen 98.9 2.3E-08 4.9E-13 89.6 12.3 101 29-146 498-608 (755)
37 COG2333 ComEC Predicted hydrol 98.9 3.1E-08 6.7E-13 79.5 11.2 107 32-146 44-159 (293)
38 PF02112 PDEase_II: cAMP phosp 98.8 1.9E-08 4.1E-13 82.1 8.7 85 32-118 1-119 (335)
39 KOG2121|consensus 98.8 1E-09 2.2E-14 95.6 1.3 105 14-118 29-138 (746)
40 COG0491 GloB Zn-dependent hydr 98.8 7.1E-08 1.5E-12 73.6 11.3 69 29-100 9-84 (252)
41 KOG1137|consensus 98.8 2.6E-09 5.6E-14 90.7 3.1 74 28-101 10-88 (668)
42 COG2220 Predicted Zn-dependent 98.7 1.5E-07 3.3E-12 73.9 8.7 115 29-153 4-128 (258)
43 COG0426 FpaA Uncharacterized f 98.6 3.5E-07 7.6E-12 75.7 9.8 100 43-148 34-142 (388)
44 KOG0813|consensus 98.6 6.2E-07 1.3E-11 70.8 9.4 98 45-149 13-115 (265)
45 PF13483 Lactamase_B_3: Beta-l 98.5 3E-07 6.6E-12 67.3 5.8 52 33-94 1-52 (163)
46 KOG1135|consensus 98.4 3.3E-06 7.1E-11 73.6 10.3 80 34-118 5-87 (764)
47 COG5212 PDE1 Low-affinity cAMP 98.2 1.6E-06 3.4E-11 68.6 3.2 76 77-154 111-206 (356)
48 COG2248 Predicted hydrolase (m 97.8 1.5E-05 3.3E-10 62.5 3.2 119 32-153 1-160 (304)
49 COG2015 Alkyl sulfatase and re 96.9 0.0016 3.5E-08 55.5 4.9 72 46-118 127-203 (655)
50 KOG1361|consensus 96.7 0.0011 2.4E-08 56.5 2.7 67 78-152 112-184 (481)
51 PF14597 Lactamase_B_5: Metall 95.8 0.052 1.1E-06 40.9 7.0 92 46-151 24-119 (199)
52 KOG3592|consensus 94.5 0.025 5.4E-07 50.4 2.3 52 47-102 50-105 (934)
53 KOG0814|consensus 92.9 0.31 6.7E-06 36.8 5.4 51 47-101 23-79 (237)
54 KOG4736|consensus 91.1 0.28 6E-06 39.5 3.6 47 47-96 97-143 (302)
55 KOG3798|consensus 63.4 5.1 0.00011 32.1 1.9 69 46-118 89-168 (343)
56 PF00797 Acetyltransf_2: N-ace 59.7 10 0.00022 29.1 3.0 21 46-66 89-109 (240)
57 PRK13277 5-formaminoimidazole- 47.9 77 0.0017 26.6 6.4 89 17-118 3-118 (366)
58 PF05162 Ribosomal_L41: Riboso 44.6 11 0.00025 18.7 0.7 14 11-24 11-24 (25)
59 PRK14627 hypothetical protein; 36.6 1.1E+02 0.0024 20.6 4.8 26 1-26 1-26 (100)
60 KOG1137|consensus 35.0 1.4E+02 0.003 26.8 6.1 84 32-116 151-246 (668)
61 KOG4752|consensus 34.7 37 0.00079 16.8 1.6 15 11-25 11-25 (26)
62 KOG0651|consensus 33.4 1.4E+02 0.0031 24.9 5.7 73 46-118 67-177 (388)
63 KOG0926|consensus 32.1 84 0.0018 29.6 4.6 70 21-95 619-688 (1172)
64 PRK15047 N-hydroxyarylamine O- 30.8 70 0.0015 25.7 3.6 22 44-65 106-127 (281)
65 COG0680 HyaD Ni,Fe-hydrogenase 28.1 42 0.0009 24.6 1.7 26 78-103 81-106 (160)
66 KOG3048|consensus 27.6 39 0.00085 24.6 1.4 21 46-66 71-94 (153)
67 PRK14625 hypothetical protein; 26.4 1.8E+02 0.0039 20.0 4.5 23 4-26 5-27 (109)
68 PF06415 iPGM_N: BPG-independe 26.2 45 0.00098 25.9 1.7 26 86-114 42-67 (223)
69 PRK09604 UGMP family protein; 25.3 1.7E+02 0.0037 23.8 5.1 23 66-88 60-82 (332)
70 cd01742 GATase1_GMP_Synthase T 23.5 1.3E+02 0.0029 21.6 3.8 33 57-89 2-52 (181)
71 KOG3414|consensus 23.5 1E+02 0.0023 22.0 2.9 20 45-64 78-97 (142)
72 PRK14011 prefoldin subunit alp 23.2 66 0.0014 23.2 2.0 27 33-66 52-81 (144)
73 cd02202 FtsZ_type2 FtsZ is a G 23.1 3.3E+02 0.0071 22.5 6.3 14 78-91 97-110 (349)
74 PRK14624 hypothetical protein; 22.2 2.3E+02 0.0051 19.6 4.5 23 4-26 9-31 (115)
75 PRK01203 prefoldin subunit alp 21.7 68 0.0015 22.8 1.8 27 33-66 51-80 (130)
76 COG2162 NhoA Arylamine N-acety 21.5 2.5E+02 0.0055 22.6 5.1 21 44-64 108-128 (275)
77 cd02986 DLP Dim1 family, Dim1- 20.7 1.3E+02 0.0028 20.9 3.0 19 46-64 70-88 (114)
No 1
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.94 E-value=1.3e-26 Score=186.21 Aligned_cols=121 Identities=28% Similarity=0.414 Sum_probs=102.8
Q ss_pred EEEEecCCC-----CCCcEEEEEEC----CeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhh
Q psy16255 34 LQVLGSGAR-----GAPKSLYLFTD----QSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQD 104 (156)
Q Consensus 34 l~~LGtg~~-----~~~~s~~I~~~----~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~ 104 (156)
|+|||||++ ++.+|++|+.+ +..||||||+|+++++.+.++++.+|++|||||.|+||+.||+.|+.+++.
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~ 80 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSM 80 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHh
Confidence 589999997 66799999864 378999999999999999999999999999999999999999999876654
Q ss_pred CC-CCceEEEcCccc--ccc----------cceeeEEEcCCCCCeEeCCEEEEEEEcCCCCCC
Q psy16255 105 VG-VPEINLHGPEGL--VSE----------NMGLASNSISPSDPALIQARTLMKIPLRPRLPL 154 (156)
Q Consensus 105 ~~-~~~l~Iygp~~~--~l~----------~~~~~~~~~~~~~~~~~~~~~V~~~~~~H~~p~ 154 (156)
.+ ..+++||||+++ +++ .+.+++++++++..+.+++++|+++|+.|++|+
T Consensus 81 ~~~~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~~~ 143 (303)
T TIGR02649 81 SGIIQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLEC 143 (303)
T ss_pred cCCCCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEccCccce
Confidence 43 357999999987 222 135677888888888999999999999998764
No 2
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.94 E-value=3.7e-26 Score=182.50 Aligned_cols=122 Identities=28% Similarity=0.421 Sum_probs=104.4
Q ss_pred EEEEEecCCC-----CCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCC-
Q psy16255 33 NLQVLGSGAR-----GAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVG- 106 (156)
Q Consensus 33 ~l~~LGtg~~-----~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~- 106 (156)
+|+|||||++ ++++|++|+.++..||||||+|+++++.+.++++.++++|||||.|+||++||+.++..+...+
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~ 80 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGR 80 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCC
Confidence 5899999998 6779999999999999999999999999998888899999999999999999999987655443
Q ss_pred CCceEEEcCccc--ccc----------cceeeEEEcCCCC-CeEeCCEEEEEEEcCCCCCC
Q psy16255 107 VPEINLHGPEGL--VSE----------NMGLASNSISPSD-PALIQARTLMKIPLRPRLPL 154 (156)
Q Consensus 107 ~~~l~Iygp~~~--~l~----------~~~~~~~~~~~~~-~~~~~~~~V~~~~~~H~~p~ 154 (156)
..+++||||+++ +++ .+.+++++++++. .+++++++|+++++.|++|+
T Consensus 81 ~~~i~Iy~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~~ 141 (299)
T TIGR02651 81 KEPLTIYGPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSIPS 141 (299)
T ss_pred CceEEEECCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcCCCCce
Confidence 348999999987 222 1345678888887 69999999999999998764
No 3
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.92 E-value=1e-24 Score=174.65 Aligned_cols=118 Identities=26% Similarity=0.483 Sum_probs=99.9
Q ss_pred eeEEEEEecCCC-----CCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhC
Q psy16255 31 IVNLQVLGSGAR-----GAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDV 105 (156)
Q Consensus 31 ~m~l~~LGtg~~-----~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~ 105 (156)
+|+++|||||++ ++.++++|+.++..+|||||+|+++++.+.++.+.+|++|||||.|.||+.||++|+.+++..
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~ 80 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGTQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFR 80 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhHHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhhcc
Confidence 589999999999 788999999988999999999999999999999999999999999999999999998877766
Q ss_pred CCC-ceEEEcCccc--ccc----------cceeeEEEcCCCCCeEeCCEEEEEEEcCCCCCC
Q psy16255 106 GVP-EINLHGPEGL--VSE----------NMGLASNSISPSDPALIQARTLMKIPLRPRLPL 154 (156)
Q Consensus 106 ~~~-~l~Iygp~~~--~l~----------~~~~~~~~~~~~~~~~~~~~~V~~~~~~H~~p~ 154 (156)
+.. ++.||||++. +++ .+++..+++.. +.+.|....+.|.+++
T Consensus 81 ~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~------~~~~v~~~~~~h~~~~ 136 (292)
T COG1234 81 GRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEE------DAFEVEALELDHGVPA 136 (292)
T ss_pred CCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEecc------CceEEEEEecCCCccc
Confidence 544 6999999986 222 12344444443 6789999999999876
No 4
>PRK02113 putative hydrolase; Provisional
Probab=99.91 E-value=8.6e-24 Score=165.33 Aligned_cols=115 Identities=21% Similarity=0.366 Sum_probs=94.9
Q ss_pred eEEEEEecCCC---------------------CCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChh
Q psy16255 32 VNLQVLGSGAR---------------------GAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWE 90 (156)
Q Consensus 32 m~l~~LGtg~~---------------------~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~D 90 (156)
|+++|||||++ |+.+|++|+.++..+|||||+|+..++.+. ++.++++|||||.|+|
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~~l~~~--~~~~id~I~lTH~H~D 78 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFREQMLRL--PFGKIDAVLITHEHYD 78 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHHHHHhc--CccccCEEEECCCChh
Confidence 68999999976 234789999999999999999999888775 5678999999999999
Q ss_pred hhcChHHHHHHHhhCCCCceEEEcCccc--cccc----------c----eeeEEEcCCCCCeEeCCEEEEEEEcCCC
Q psy16255 91 NLGGLLGLALTIQDVGVPEINLHGPEGL--VSEN----------M----GLASNSISPSDPALIQARTLMKIPLRPR 151 (156)
Q Consensus 91 Hi~GL~~l~~~~~~~~~~~l~Iygp~~~--~l~~----------~----~~~~~~~~~~~~~~~~~~~V~~~~~~H~ 151 (156)
|++||+.+.... ...+++||||+.+ .++. + .++++++++++.+++++++|++++++|+
T Consensus 79 H~~gl~~l~~~~---~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~H~ 152 (252)
T PRK02113 79 HVGGLDDLRPFC---RFGEVPIYAEQYVAERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVMHG 152 (252)
T ss_pred hhCCHHHHHHhc---cCCCceEEECHHHHHHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEecCC
Confidence 999999775321 2357999999987 2221 1 2567888999999999999999999996
No 5
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.91 E-value=7.1e-24 Score=170.56 Aligned_cols=116 Identities=17% Similarity=0.273 Sum_probs=93.5
Q ss_pred eEEEEEecCCC-------------------------CCCcEEEEEECC-eEEEEecCchHHHHHHHc-------CCCcCC
Q psy16255 32 VNLQVLGSGAR-------------------------GAPKSLYLFTDQ-SRYLFNCGEGTQRLAHEH-------KMKLAK 78 (156)
Q Consensus 32 m~l~~LGtg~~-------------------------~~~~s~~I~~~~-~~iLiD~G~g~~~~l~~~-------~~~~~~ 78 (156)
|+|+|||||++ +..+|++|+.++ ..+|||||+|+..++.+. ++++.+
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~~~~~ 80 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIRQQIQATPALQPARGLRDTP 80 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHHHHHHhchhcCccccCCccc
Confidence 78999999776 224789998765 469999999999999886 567789
Q ss_pred cCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc--cccc----c-------eeeEEEcCCCCCeEeC---CEE
Q psy16255 79 LDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL--VSEN----M-------GLASNSISPSDPALIQ---ART 142 (156)
Q Consensus 79 i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~--~l~~----~-------~~~~~~~~~~~~~~~~---~~~ 142 (156)
|++|||||.|+||+.||+.|. ...+++||||+++ .++. + .++++++++++.++++ +++
T Consensus 81 ldav~lTH~H~DHi~Gl~~l~------~~~~l~Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 154 (302)
T PRK05184 81 IAAVVLTDGQIDHTTGLLTLR------EGQPFPVYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLR 154 (302)
T ss_pred ccEEEEeCCchhhhhChHhhc------cCCCeEEEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcE
Confidence 999999999999999998762 2458999999988 2221 1 2466788888888886 899
Q ss_pred EEEEEcCCCCC
Q psy16255 143 LMKIPLRPRLP 153 (156)
Q Consensus 143 V~~~~~~H~~p 153 (156)
|+++++.|+.|
T Consensus 155 Vt~~~v~H~~~ 165 (302)
T PRK05184 155 FTAFPVPSKAP 165 (302)
T ss_pred EEEEEcCCCCC
Confidence 99999998753
No 6
>PRK00055 ribonuclease Z; Reviewed
Probab=99.89 E-value=4.9e-23 Score=161.51 Aligned_cols=88 Identities=34% Similarity=0.561 Sum_probs=78.7
Q ss_pred eeEEEEEecCCC-----CCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhC
Q psy16255 31 IVNLQVLGSGAR-----GAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDV 105 (156)
Q Consensus 31 ~m~l~~LGtg~~-----~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~ 105 (156)
||+|+|||||++ ++++|++|+.++..||||||+|+++++.+.++++.++++|||||.|+||++||+.++..++..
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~ 80 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLS 80 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhc
Confidence 689999999997 457899999999999999999999999988888899999999999999999999998766544
Q ss_pred C-CCceEEEcCccc
Q psy16255 106 G-VPEINLHGPEGL 118 (156)
Q Consensus 106 ~-~~~l~Iygp~~~ 118 (156)
+ ..++.||||+++
T Consensus 81 ~~~~~l~iy~p~~~ 94 (270)
T PRK00055 81 GRTEPLTIYGPKGI 94 (270)
T ss_pred CCCceEEEECCccH
Confidence 3 458999999987
No 7
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.86 E-value=6.9e-21 Score=149.02 Aligned_cols=114 Identities=19% Similarity=0.273 Sum_probs=88.7
Q ss_pred eEEEEEecCCC-----------------------CCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCC
Q psy16255 32 VNLQVLGSGAR-----------------------GAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPV 88 (156)
Q Consensus 32 m~l~~LGtg~~-----------------------~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H 88 (156)
|++++||||++ ++++|++|+.++..+|||||.+... ..+++.++++|||||.|
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~~~----~~~~~~~i~~i~iTH~H 76 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPDLA----ERFPPGSLQQILLTHYH 76 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChHHh----hcCCcccCCEEEEccCc
Confidence 79999999998 2357999999999999999976432 23567899999999999
Q ss_pred hhhhcChHHHHHHHhhCCCCceEEEcCccc-----ccccc-eeeE-EEcCCCCCeEeCCEEEEEEEcCCCCC
Q psy16255 89 WENLGGLLGLALTIQDVGVPEINLHGPEGL-----VSENM-GLAS-NSISPSDPALIQARTLMKIPLRPRLP 153 (156)
Q Consensus 89 ~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~-----~l~~~-~~~~-~~~~~~~~~~~~~~~V~~~~~~H~~p 153 (156)
+||++||..+.. ....+++||+|+++ +++.. .+++ ..+++++.+++++++|+++|+.|+.+
T Consensus 77 ~DHi~gl~~l~~----~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~~H~~~ 144 (250)
T PRK11244 77 MDHVQGLFPLRW----GVGDPIPVYGPPDPEGCDDLFKHPGILDFSHPLEPFEPFDLGGLQVTPLPLNHSKL 144 (250)
T ss_pred hhhhccHHHHHh----hcCCceeEEeCCchhhHHHHhcCccccccccccCCCCCeeECCEEEEEEeeCCCcc
Confidence 999999976632 12357999999875 22211 1233 35778889999999999999999865
No 8
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.85 E-value=1.3e-20 Score=151.73 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=88.4
Q ss_pred EEEEEecCCC-------------------------CCCcEEEEEE-CCeEEEEecCchHHHHHHHc-------CCCcCCc
Q psy16255 33 NLQVLGSGAR-------------------------GAPKSLYLFT-DQSRYLFNCGEGTQRLAHEH-------KMKLAKL 79 (156)
Q Consensus 33 ~l~~LGtg~~-------------------------~~~~s~~I~~-~~~~iLiD~G~g~~~~l~~~-------~~~~~~i 79 (156)
+++|||||++ |..+|++|+. ++..+|||||+++..++.+. ++++.+|
T Consensus 1 ~~~~LGtg~s~G~P~~~C~C~~C~~a~~~~~~~~~R~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~I 80 (302)
T TIGR02108 1 HIVVLGSAAGGGFPQWNCNCPNCRGARAGTIGAKARTQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPI 80 (302)
T ss_pred CEEEEEecCCCCCCcCCCCChhhHHHhcCCCCCccccccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccC
Confidence 4789999887 2246889965 44689999999999999887 6788999
Q ss_pred CeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc--cccc---c------eeeEEEcCCCCCeEeC-----CEEE
Q psy16255 80 DSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL--VSEN---M------GLASNSISPSDPALIQ-----ARTL 143 (156)
Q Consensus 80 ~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~--~l~~---~------~~~~~~~~~~~~~~~~-----~~~V 143 (156)
++|||||.|.||+.||+.|. ...+++||+++++ .++. + .++++.++.++.+.++ +++|
T Consensus 81 daI~lTH~H~DHi~GL~~L~------~~~~lpVya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I 154 (302)
T TIGR02108 81 AGVVLTDGEIDHTTGLLTLR------EGQPFTLYATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEF 154 (302)
T ss_pred CEEEEeCCCcchhhCHHHHc------CCCCceEEECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEE
Confidence 99999999999999998773 2358999999998 2321 1 1334666777777654 5999
Q ss_pred EEEEcCCC
Q psy16255 144 MKIPLRPR 151 (156)
Q Consensus 144 ~~~~~~H~ 151 (156)
++|+++|+
T Consensus 155 ~~f~v~h~ 162 (302)
T TIGR02108 155 TPFAVPGK 162 (302)
T ss_pred EEEEcCCC
Confidence 99999943
No 9
>PRK02126 ribonuclease Z; Provisional
Probab=99.76 E-value=8.4e-18 Score=137.02 Aligned_cols=117 Identities=13% Similarity=0.166 Sum_probs=83.5
Q ss_pred eeEEEEEecCCCCCCcEEEEEEC--CeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCC
Q psy16255 31 IVNLQVLGSGARGAPKSLYLFTD--QSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVP 108 (156)
Q Consensus 31 ~m~l~~LGtg~~~~~~s~~I~~~--~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~ 108 (156)
+++.++..... ..+|++|..+ +..+|||||+ .+++.+. ++.+|++|||||.|+||++|++.|+..+. .+..
T Consensus 4 ~~~~~~~~g~~--~dn~~~l~~~~~~~~iLiD~G~--~~~l~~~--~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~-~r~~ 76 (334)
T PRK02126 4 LLEPRLVNGPF--DDPGLYVDFLFERRALLFDLGD--LHHLPPR--ELLRISHIFVSHTHMDHFIGFDRLLRHCL-GRPR 76 (334)
T ss_pred cceeEEecCCC--CCcEEEEEECCCCeEEEEcCCC--HHHHhhc--CCCccCEEEEcCCChhHhCcHHHHHHHhc-cCCC
Confidence 44555544333 3478888764 7899999999 5555554 55789999999999999999999986543 2345
Q ss_pred ceEEEcCccc--cc----cc------------ceeeEEEc--------------------------CCCCCeEeCCEEEE
Q psy16255 109 EINLHGPEGL--VS----EN------------MGLASNSI--------------------------SPSDPALIQARTLM 144 (156)
Q Consensus 109 ~l~Iygp~~~--~l----~~------------~~~~~~~~--------------------------~~~~~~~~~~~~V~ 144 (156)
+++||||+++ ++ .. +.+...++ +++..++.++++|+
T Consensus 77 ~l~iygp~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 156 (334)
T PRK02126 77 RLRLFGPPGFADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVR 156 (334)
T ss_pred CeEEEECHHHHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEE
Confidence 8999999998 21 11 12222221 13445788899999
Q ss_pred EEEcCCCCCC
Q psy16255 145 KIPLRPRLPL 154 (156)
Q Consensus 145 ~~~~~H~~p~ 154 (156)
++|+.|++|+
T Consensus 157 a~~~~H~vp~ 166 (334)
T PRK02126 157 AAFLDHGIPC 166 (334)
T ss_pred EEEccCCCce
Confidence 9999999886
No 10
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.71 E-value=8.5e-17 Score=124.98 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc----
Q psy16255 43 GAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL---- 118 (156)
Q Consensus 43 ~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~---- 118 (156)
++.+|++|+.++..+|||||.+... ..+++.++++|||||.|+||+.||+.+... ...+++||+|+++
T Consensus 25 r~~~s~~i~~~~~~iliD~G~~~~~----~~~~~~~id~i~iTH~H~DHi~gl~~l~~~----~~~~~~v~~~~~~~~~~ 96 (238)
T TIGR03307 25 RQPCSAVIEFNGARTLIDAGLTDLA----ERFPPGSLQAILLTHYHMDHVQGLFPLRWG----VGEPIPVYGPPDEEGCD 96 (238)
T ss_pred CcceEEEEEECCcEEEEECCChhHh----hccCccCCCEEEEecCchhhhcchHHHHHh----cCCceeEEeCchHhhHH
Confidence 5678999999999999999976532 235667899999999999999999766431 1347999999876
Q ss_pred -ccccc-eeeE-EEcCCCCCeEeCCEEEEEEEcCCCCC
Q psy16255 119 -VSENM-GLAS-NSISPSDPALIQARTLMKIPLRPRLP 153 (156)
Q Consensus 119 -~l~~~-~~~~-~~~~~~~~~~~~~~~V~~~~~~H~~p 153 (156)
+++.. ..++ ..+.+++.+++++++|+++|+.|+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~ 134 (238)
T TIGR03307 97 DLFKHPGILDFSKPLEAFEPFDLGGLRVTPLPLVHSKL 134 (238)
T ss_pred HHhcCcccccccccccCCceEEECCEEEEEEecCCCCc
Confidence 11111 1122 23677889999999999999999865
No 11
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.69 E-value=1.5e-16 Score=133.21 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=87.5
Q ss_pred eEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHHH-H----------HHcCCCcCCcCeEEEcCCChhhhcChHHHHH
Q psy16255 32 VNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRL-A----------HEHKMKLAKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 32 m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~~-l----------~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
+++.+||.......+|++|+.++..+|||||.++... + ........++++|||||.|.||++|++.++.
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 3677887665556799999999999999999875321 0 0011124589999999999999999998865
Q ss_pred HHhhCCCCceEEEcCccc--cccc------c--eeeEEEcCCCCCeEeC-CEEEEEEEcCCCCCC
Q psy16255 101 TIQDVGVPEINLHGPEGL--VSEN------M--GLASNSISPSDPALIQ-ARTLMKIPLRPRLPL 154 (156)
Q Consensus 101 ~~~~~~~~~l~Iygp~~~--~l~~------~--~~~~~~~~~~~~~~~~-~~~V~~~~~~H~~p~ 154 (156)
.+ ..++||+|+.+ +++. + ...++++++++.++++ +++|+++++.|++|.
T Consensus 81 ~~-----~~~~Vy~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~ 140 (422)
T TIGR00649 81 TV-----GFPPIYGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPD 140 (422)
T ss_pred hC-----CCCeEEeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcc
Confidence 42 23689999987 3221 1 1346778889999996 699999999998874
No 12
>PRK04286 hypothetical protein; Provisional
Probab=99.66 E-value=3.1e-16 Score=126.07 Aligned_cols=121 Identities=10% Similarity=0.071 Sum_probs=84.8
Q ss_pred eEEEEEecCCCC-CCcEEEEEECCeEEEEecCchH-----------------HHHHHHcCCCcCCcCeEEEcCCChhhhc
Q psy16255 32 VNLQVLGSGARG-APKSLYLFTDQSRYLFNCGEGT-----------------QRLAHEHKMKLAKLDSVFITQPVWENLG 93 (156)
Q Consensus 32 m~l~~LGtg~~~-~~~s~~I~~~~~~iLiD~G~g~-----------------~~~l~~~~~~~~~i~~IfiTH~H~DHi~ 93 (156)
|++.+||||+.+ .++|++|+.++.++|||+|.+. ...+.+....+.++++|||||.|+||+.
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 689999999875 3589999999999999999553 1233444566779999999999999998
Q ss_pred ChHHHHHHHhhCCCCceEEEcCcccccc---------------cc-----ee-eEEEcCCCCCeEeCCEEEEEE-EcCCC
Q psy16255 94 GLLGLALTIQDVGVPEINLHGPEGLVSE---------------NM-----GL-ASNSISPSDPALIQARTLMKI-PLRPR 151 (156)
Q Consensus 94 GL~~l~~~~~~~~~~~l~Iygp~~~~l~---------------~~-----~~-~~~~~~~~~~~~~~~~~V~~~-~~~H~ 151 (156)
|+..++... ..++.++.||++..++.. .+ .. ....+.+++.+.+++++|+++ |+.|+
T Consensus 81 g~~~~~y~~-~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~ 159 (298)
T PRK04286 81 PFYEDPYEL-SDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHG 159 (298)
T ss_pred Ccccccccc-ccccchHHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCC
Confidence 886542111 012335677776555211 00 00 124456788899999999966 89997
Q ss_pred CC
Q psy16255 152 LP 153 (156)
Q Consensus 152 ~p 153 (156)
.+
T Consensus 160 ~~ 161 (298)
T PRK04286 160 AD 161 (298)
T ss_pred CC
Confidence 65
No 13
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.63 E-value=1.7e-15 Score=116.44 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=81.6
Q ss_pred eEEEEEecCCCCCCcEEEEEECCeEEEEecCc---hHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCC
Q psy16255 32 VNLQVLGSGARGAPKSLYLFTDQSRYLFNCGE---GTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVP 108 (156)
Q Consensus 32 m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~---g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~ 108 (156)
|++++||+ +|++|+.++.++||||+- ... . ......++|+|||||.|.||+.|+..++. +.
T Consensus 1 m~i~~lG~------s~~li~~~~~~iLiDP~~~~~~~~-~---~~~~~~~id~vliTH~H~DH~~~~~~~~~------~~ 64 (228)
T PRK00685 1 MKITWLGH------SAFLIETGGKKILIDPFITGNPLA-D---LKPEDVKVDYILLTHGHGDHLGDTVEIAK------RT 64 (228)
T ss_pred CEEEEEcc------eEEEEEECCEEEEECCCCCCCCCC-C---CChhcCcccEEEeCCCCccccccHHHHHH------hC
Confidence 68999996 689999999999999742 221 1 11122379999999999999999876532 23
Q ss_pred ceEEEcCccc--cccccee-eEEEcCCCCCeEeCCEEEEEEEcCCCCCC
Q psy16255 109 EINLHGPEGL--VSENMGL-ASNSISPSDPALIQARTLMKIPLRPRLPL 154 (156)
Q Consensus 109 ~l~Iygp~~~--~l~~~~~-~~~~~~~~~~~~~~~~~V~~~~~~H~~p~ 154 (156)
.++||+|.++ +++...+ +++++++++.+++++++|+++|+.|+.+.
T Consensus 65 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~H~~~~ 113 (228)
T PRK00685 65 GATVIANAELANYLSEKGVEKTHPMNIGGTVEFDGGKVKLTPALHSSSF 113 (228)
T ss_pred CCEEEEeHHHHHHHHhcCCCceeeccCCCcEEECCEEEEEEEEEcCCCC
Confidence 5789999987 4443333 56778889999999999999999997653
No 14
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.59 E-value=1.1e-14 Score=127.19 Aligned_cols=121 Identities=18% Similarity=0.118 Sum_probs=87.8
Q ss_pred CCCeeEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHH----H---HHHcCCCcCCcCeEEEcCCChhhhcChHHHHH
Q psy16255 28 VPGIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQR----L---AHEHKMKLAKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 28 ~~~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~----~---l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
....|+|++||.++.-..+|++|+.++..+|||||-.... . +....+.+.++++|||||.|.||+++||.|+.
T Consensus 171 ~~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k 250 (630)
T TIGR03675 171 KDRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK 250 (630)
T ss_pred CCCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH
Confidence 3446899999988877779999999999999999965421 1 11123446789999999999999999997763
Q ss_pred HHhhCCCCceEEEcCccc--c----ccc-------------ce--------eeEEEcCCCCCeEe-CCEEEEEEEcCCCC
Q psy16255 101 TIQDVGVPEINLHGPEGL--V----SEN-------------MG--------LASNSISPSDPALI-QARTLMKIPLRPRL 152 (156)
Q Consensus 101 ~~~~~~~~~l~Iygp~~~--~----l~~-------------~~--------~~~~~~~~~~~~~~-~~~~V~~~~~~H~~ 152 (156)
. . ...+||+.+.+ + +.. +. ..+..++.++.+.+ ++++|+++++.|..
T Consensus 251 ~-g----~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHil 325 (630)
T TIGR03675 251 Y-G----YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHIL 325 (630)
T ss_pred h-C----CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCcccc
Confidence 2 1 12468988765 1 110 00 13456677888887 58999999999975
Q ss_pred C
Q psy16255 153 P 153 (156)
Q Consensus 153 p 153 (156)
.
T Consensus 326 G 326 (630)
T TIGR03675 326 G 326 (630)
T ss_pred C
Confidence 4
No 15
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.58 E-value=4e-15 Score=110.95 Aligned_cols=96 Identities=26% Similarity=0.358 Sum_probs=71.2
Q ss_pred EEEEecCchHH--H---HHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc--ccc--c----
Q psy16255 56 RYLFNCGEGTQ--R---LAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL--VSE--N---- 122 (156)
Q Consensus 56 ~iLiD~G~g~~--~---~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~--~l~--~---- 122 (156)
++|||||++.. + ++.+...++.++++|||||.|.||+.|++.+......... +||||+.+ .++ .
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~---~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK---PIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT---EEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc---eEEecHHHHHHHHhhhcccc
Confidence 69999999977 1 2222112334899999999999999999999876654322 99999988 333 2
Q ss_pred ------ceeeEEEcCCCCCeEeCCEEEEEEEcCCCCCC
Q psy16255 123 ------MGLASNSISPSDPALIQARTLMKIPLRPRLPL 154 (156)
Q Consensus 123 ------~~~~~~~~~~~~~~~~~~~~V~~~~~~H~~p~ 154 (156)
-..+++.+.++..++.++++|+++|+.|..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~ 116 (194)
T PF12706_consen 79 DLYPEEDNFDIIEISPGDEFEIGDFRITPFPANHGPPS 116 (194)
T ss_dssp TTCCTTSGEEEEEECTTEEEEETTEEEEEEEEESSSCC
T ss_pred cccccccceeEEEeccCceEEeceEEEEEEeccccccc
Confidence 12467778888899999999999999998775
No 16
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.57 E-value=3.8e-15 Score=117.97 Aligned_cols=110 Identities=11% Similarity=0.130 Sum_probs=77.8
Q ss_pred ecCCCCCCcEEEEEECCeEEEEe-cCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhh--CCCCceEEEc
Q psy16255 38 GSGARGAPKSLYLFTDQSRYLFN-CGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQD--VGVPEINLHG 114 (156)
Q Consensus 38 Gtg~~~~~~s~~I~~~~~~iLiD-~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~--~~~~~l~Iyg 114 (156)
|-+.+...+++++ ...++||| +|+|....+.+ ++..++.|||||.|.||++||+.++.+..+ .+.+|+.||+
T Consensus 4 g~s~a~~~t~~~~--~~~~ilfD~ag~g~~~~l~~---k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~ 78 (277)
T TIGR02650 4 GFFKAAFFSTIIY--SPEEIIFDAAEEGSSTLGGK---KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFF 78 (277)
T ss_pred eeechhheEEEEE--CchhheehhhcccchhHHhh---hHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEEC
Confidence 3333334455555 57889999 99999877643 345799999999999999999877663322 3566899999
Q ss_pred Cccc--cc-------cc------ceeeEEEcCCCCCeEeC----CEEEEEEEcCCCC
Q psy16255 115 PEGL--VS-------EN------MGLASNSISPSDPALIQ----ARTLMKIPLRPRL 152 (156)
Q Consensus 115 p~~~--~l-------~~------~~~~~~~~~~~~~~~~~----~~~V~~~~~~H~~ 152 (156)
|+++ .. +. +.+++...+.++.+... .+.|.++++.|.+
T Consensus 79 P~g~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v 135 (277)
T TIGR02650 79 PKEGNAAEEETSEFIKAANEDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHA 135 (277)
T ss_pred CcchhHHHHHHHHHHHHhhhhhccCcccCCCCCCcEEEeecCCccEEEecCcccccc
Confidence 9996 11 11 23445445556655554 3899999999997
No 17
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=99.57 E-value=9.7e-15 Score=91.29 Aligned_cols=60 Identities=55% Similarity=0.975 Sum_probs=55.8
Q ss_pred EEEecCCCCCC-cEEEEEECCeEEEE-ecCchHHHHHHHcCCCcCCcCeEEEcCCC-hhhhcC
Q psy16255 35 QVLGSGARGAP-KSLYLFTDQSRYLF-NCGEGTQRLAHEHKMKLAKLDSVFITQPV-WENLGG 94 (156)
Q Consensus 35 ~~LGtg~~~~~-~s~~I~~~~~~iLi-D~G~g~~~~l~~~~~~~~~i~~IfiTH~H-~DHi~G 94 (156)
+++.+.++++. +|++|.+++++||| +||||++|.+.+.++++.++++||||+.. ||+++|
T Consensus 1 qvvt~~s~DT~~p~l~l~~d~~rYlFGn~gEGtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 1 QVVTTPSADTSGPSLLLFFDSRRYLFGNCGEGTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CeeecCCCCCCCCEEEEEeCCceEEeccCCcHHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 36777787776 99999999999999 99999999999999999999999999999 999987
No 18
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.55 E-value=3.1e-14 Score=122.27 Aligned_cols=118 Identities=11% Similarity=0.125 Sum_probs=90.1
Q ss_pred CeeEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHH--------------HHHHcCCCcCCcCeEEEcCCChhhhcCh
Q psy16255 30 GIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQR--------------LAHEHKMKLAKLDSVFITQPVWENLGGL 95 (156)
Q Consensus 30 ~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~--------------~l~~~~~~~~~i~~IfiTH~H~DHi~GL 95 (156)
..+++..||--.-...+|+.++.++..++||||--+.. .+.+ ...++++|||||.|.||++++
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~---n~~kvkgI~lTHgHeDHIGai 83 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEE---NKDKVKGIFLTHGHEDHIGAL 83 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhh---ccccceEEEecCCchhhccch
Confidence 55667777644434468999999999999999965431 1222 235899999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEcCccc--cccc-------c--eeeEEEcCCCCCeEeCCEEEEEEEcCCCCCCC
Q psy16255 96 LGLALTIQDVGVPEINLHGPEGL--VSEN-------M--GLASNSISPSDPALIQARTLMKIPLRPRLPLD 155 (156)
Q Consensus 96 ~~l~~~~~~~~~~~l~Iygp~~~--~l~~-------~--~~~~~~~~~~~~~~~~~~~V~~~~~~H~~p~~ 155 (156)
|.|+... ..++||+++-+ +++. + ..++++++++..++++++.|++++++|++|+.
T Consensus 84 p~ll~~~-----~~~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds 149 (555)
T COG0595 84 PYLLKQV-----LFAPIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDS 149 (555)
T ss_pred HHHHhcC-----CcCceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccc
Confidence 9887532 23899998876 2221 1 24778899999999999999999999999964
No 19
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.53 E-value=8.1e-14 Score=102.20 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=74.2
Q ss_pred CCCcEEEEEECCeEEEEecCchHH-HH---HHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 43 GAPKSLYLFTDQSRYLFNCGEGTQ-RL---AHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 43 ~~~~s~~I~~~~~~iLiD~G~g~~-~~---l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
+..+|++|+.++..+|||||.+.. .. +.+.+ ..++++||+||.|.||++|++.+... ..++||+|+..
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~------~~~~i~~~~~~ 75 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAEDLLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA------PGAPVYAPEGT 75 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHHHHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC------CCCcEEEchhh
Confidence 345899999999999999996654 22 44444 67999999999999999999877653 34678998877
Q ss_pred --cccc-------------ceeeEEEcCCCCCeEeCCEEEEEEEc
Q psy16255 119 --VSEN-------------MGLASNSISPSDPALIQARTLMKIPL 148 (156)
Q Consensus 119 --~l~~-------------~~~~~~~~~~~~~~~~~~~~V~~~~~ 148 (156)
+++. ....+..++.+..+++++.+++.++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (183)
T smart00849 76 AELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHT 120 (183)
T ss_pred hHHHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEEC
Confidence 3331 11245667888889998888888877
No 20
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.48 E-value=2.6e-13 Score=107.50 Aligned_cols=120 Identities=17% Similarity=0.197 Sum_probs=80.5
Q ss_pred CeeEEEEEecCCCCCC-----cE-------EEEEE--CCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcCh
Q psy16255 30 GIVNLQVLGSGARGAP-----KS-------LYLFT--DQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGL 95 (156)
Q Consensus 30 ~~m~l~~LGtg~~~~~-----~s-------~~I~~--~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL 95 (156)
+.|++++||+|++++. +| ..+.. ..+.++||+|++...+..+.+. .++++||+||.|+||+.|+
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~~~~~~~~~~--~~idai~~TH~H~DHi~Gl 79 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDLRDQGLRLGV--SDLDAILLTHEHSDHIQGL 79 (269)
T ss_pred CceEEEEEEEcCCCCceecCCCccccCCceEEEEEEecceeEEEecChhHHhhhhcccc--cccCeEEEecccHHhhcCh
Confidence 5689999999998542 23 33332 3457899999999887766554 5799999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEcCccc------ccccceee-EEEcCCCCCeEeCCEEEEEEEcCCCCCCC
Q psy16255 96 LGLALTIQDVGVPEINLHGPEGL------VSENMGLA-SNSISPSDPALIQARTLMKIPLRPRLPLD 155 (156)
Q Consensus 96 ~~l~~~~~~~~~~~l~Iygp~~~------~l~~~~~~-~~~~~~~~~~~~~~~~V~~~~~~H~~p~~ 155 (156)
+.|...+.. ++.++..... +.+.+... .++..+...+.+.++.+.+++++|...++
T Consensus 80 ~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hd~~~~ 142 (269)
T COG1235 80 DDLRRAYTL----PIYVNPGTLRASTSDRLLGGFPYLFRHPFPPFSLPAIGGLEVTPFPVPHDAIEP 142 (269)
T ss_pred HHHHHHhcC----CcccccceecccchhhhhccchhhhcCCCCccccccccceeeecCCCCCccccC
Confidence 988664432 2222221111 22323221 23334566778889999999999976553
No 21
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.45 E-value=3.8e-13 Score=104.87 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=58.5
Q ss_pred CcEEEEEECCeEEEEecCch---HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 45 PKSLYLFTDQSRYLFNCGEG---TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 45 ~~s~~I~~~~~~iLiD~G~g---~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
+-|++|+.++.++|||+|.. +...++.+++++.++|+|+|||.|+||++||+.++.. +...++||++++.
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~----~~~~i~v~ahp~a 94 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEE----NNPGIPVYAHPDA 94 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhc----cCCCceEEeChHH
Confidence 46999999999999999943 3456777899999999999999999999999977542 2357899998877
No 22
>KOG2121|consensus
Probab=99.43 E-value=6e-14 Score=121.48 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=74.6
Q ss_pred CCeeEEEEEecCCC-----CCCcEEEEEECCeE-EEEecCchHHHHHHH-cCCC-----cCCcCeEEEcCCChhhhcChH
Q psy16255 29 PGIVNLQVLGSGAR-----GAPKSLYLFTDQSR-YLFNCGEGTQRLAHE-HKMK-----LAKLDSVFITQPVWENLGGLL 96 (156)
Q Consensus 29 ~~~m~l~~LGtg~~-----~~~~s~~I~~~~~~-iLiD~G~g~~~~l~~-~~~~-----~~~i~~IfiTH~H~DHi~GL~ 96 (156)
.+.++|.+||||++ ||-++++|+.+... +|+|||||+.-++.+ +|.+ +.++.+|||||.|.||..||+
T Consensus 440 ~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~ 519 (746)
T KOG2121|consen 440 KKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLI 519 (746)
T ss_pred cCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHH
Confidence 36799999999998 77789999987655 999999999988866 3622 468899999999999999999
Q ss_pred HHHHHHhhC----CCCceEEEcCccc
Q psy16255 97 GLALTIQDV----GVPEINLHGPEGL 118 (156)
Q Consensus 97 ~l~~~~~~~----~~~~l~Iygp~~~ 118 (156)
.++..+... ...++.|.+|+..
T Consensus 520 ~vL~~r~k~~k~~~~~pl~vv~P~ql 545 (746)
T KOG2121|consen 520 SVLQARTKLLKGVENSPLLVVAPRQL 545 (746)
T ss_pred HHHHHHHHhccccccCceEEeChHHH
Confidence 998765432 2358999999988
No 23
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.31 E-value=2.1e-11 Score=95.66 Aligned_cols=94 Identities=12% Similarity=0.193 Sum_probs=69.3
Q ss_pred cEEEEEECC-eEEEEecCchH--HHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccccccc
Q psy16255 46 KSLYLFTDQ-SRYLFNCGEGT--QRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGLVSEN 122 (156)
Q Consensus 46 ~s~~I~~~~-~~iLiD~G~g~--~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~~l~~ 122 (156)
.+|+|..++ ..+|||+|.+. .+.+.+.++ ++++||+||.|+||++|+..+...+ ++.|||++...+..
T Consensus 11 ~~yli~~~~~~~ilID~g~~~~i~~~l~~~g~---~l~~Il~TH~H~DHigG~~~l~~~~------~~~V~~~~~~~~~~ 81 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGEAEPVLDALEARGL---TLTAILLTHHHHDHVGGVAELLEAF------PAPVYGPAEERIPG 81 (248)
T ss_pred EEEEEEcCCCCEEEEcCCChHHHHHHHHHcCC---eeeEEEeCCCCccccCCHHHHHHHC------CCeEEecccccCCC
Confidence 467776554 79999999753 455666654 5899999999999999998876432 37899987652111
Q ss_pred ceeeEEEcCCCCCeEeCCEEEEEEEcC-CC
Q psy16255 123 MGLASNSISPSDPALIQARTLMKIPLR-PR 151 (156)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~V~~~~~~-H~ 151 (156)
..+.+.+++.+.+++.+|+.+.+. |+
T Consensus 82 ---~~~~v~~g~~~~~g~~~i~v~~tpGHT 108 (248)
T TIGR03413 82 ---ITHPVKDGDTVTLGGLEFEVLAVPGHT 108 (248)
T ss_pred ---CcEEeCCCCEEEECCEEEEEEECCCCC
Confidence 134567888899999999998877 54
No 24
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.27 E-value=2.7e-11 Score=100.81 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=73.0
Q ss_pred CCcEEEEEECCeEEEEecCch-----HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 44 APKSLYLFTDQSRYLFNCGEG-----TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 44 ~~~s~~I~~~~~~iLiD~G~g-----~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
+.+||+|.. ++.+|||+|.+ ....+.+ .+++.+|++|++||.|.||++|++.++..+ +..+||+++..
T Consensus 32 ~~NsyLI~~-~~~vLIDtg~~~~~~~~~~~l~~-~~~~~~Id~IilTH~H~DHiggl~~l~~~~-----p~a~V~~~~~~ 104 (394)
T PRK11921 32 SYNSYLIKD-EKTVLIDTVWQPFAKEFVENLKK-EIDLDKIDYIVANHGEIDHSGALPELMKEI-----PDTPIYCTKNG 104 (394)
T ss_pred EEEEEEEeC-CCEEEEeCCCCCcHHHHHHHHHh-hcCcccCCEEEeCCCCCchhhHHHHHHHHC-----CCCEEEECHHH
Confidence 457999974 57899999953 2222333 456778999999999999999998886532 24789998875
Q ss_pred --cccc---ceeeEEEcCCCCCeEeCCEEEEEEEcC--CC
Q psy16255 119 --VSEN---MGLASNSISPSDPALIQARTLMKIPLR--PR 151 (156)
Q Consensus 119 --~l~~---~~~~~~~~~~~~~~~~~~~~V~~~~~~--H~ 151 (156)
++.. ....++.++.++.+.+++.+++.+.+. |.
T Consensus 105 ~~~l~~~~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~ 144 (394)
T PRK11921 105 AKSLKGHYHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHW 144 (394)
T ss_pred HHHHHHHhCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCC
Confidence 3221 123456678888999999999998555 74
No 25
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.23 E-value=1.3e-10 Score=91.29 Aligned_cols=107 Identities=15% Similarity=0.258 Sum_probs=71.9
Q ss_pred eEEEEEecCCCCCCcEEEEEE-CCeEEEEecCchH--HHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCC
Q psy16255 32 VNLQVLGSGARGAPKSLYLFT-DQSRYLFNCGEGT--QRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVP 108 (156)
Q Consensus 32 m~l~~LGtg~~~~~~s~~I~~-~~~~iLiD~G~g~--~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~ 108 (156)
|+|+.+-+.. +| .+|+|.. ++..++||+|.+- ...+.+.++ ++++|++||.|+||++|+..|...+ .
T Consensus 1 ~~i~~~~~~~-dN-y~~li~~~~~~~ilIDpg~~~~vl~~l~~~g~---~l~~IllTH~H~DHigG~~~l~~~~-----~ 70 (251)
T PRK10241 1 MNLNSIPAFD-DN-YIWVLNDEAGRCLIVDPGEAEPVLNAIAENNW---QPEAIFLTHHHHDHVGGVKELVEKF-----P 70 (251)
T ss_pred CeeEEeeeec-ce-EEEEEEcCCCcEEEECCCChHHHHHHHHHcCC---ccCEEEeCCCCchhhccHHHHHHHC-----C
Confidence 3566666543 22 3455644 3578999999863 445666665 4689999999999999998886543 2
Q ss_pred ceEEEcCcccccccceeeEEEcCCCCCeEeCCEEEEEEEcC-CC
Q psy16255 109 EINLHGPEGLVSENMGLASNSISPSDPALIQARTLMKIPLR-PR 151 (156)
Q Consensus 109 ~l~Iygp~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-H~ 151 (156)
.+.||+|....... ..+.++.|+.+.+++.+++.+.+. |+
T Consensus 71 ~~~V~~~~~~~~~~---~~~~v~~g~~i~ig~~~~~vi~tPGHT 111 (251)
T PRK10241 71 QIVVYGPQETQDKG---TTQVVKDGETAFVLGHEFSVFATPGHT 111 (251)
T ss_pred CCEEEecccccccC---CceEeCCCCEEEeCCcEEEEEEcCCCC
Confidence 36899987652111 124467778888888787777665 54
No 26
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.5e-11 Score=102.02 Aligned_cols=116 Identities=17% Similarity=0.200 Sum_probs=84.5
Q ss_pred eEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHHHHHHcCC--CcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCc
Q psy16255 32 VNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKM--KLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPE 109 (156)
Q Consensus 32 m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~--~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~ 109 (156)
|++.++|.+..-..+|++|+.++.++|+|||........+.-+ ...++|++||||+|.||+++++.+..... .
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~-----~ 75 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPSPERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGF-----E 75 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCCccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhcc-----C
Confidence 5688999888777899999999999999999654222111111 11268999999999999999998876321 2
Q ss_pred eEEEcCccc--c----cc-cce-------------------eeEEEcCCCCCeEeCCEEEEEEEcCCCC
Q psy16255 110 INLHGPEGL--V----SE-NMG-------------------LASNSISPSDPALIQARTLMKIPLRPRL 152 (156)
Q Consensus 110 l~Iygp~~~--~----l~-~~~-------------------~~~~~~~~~~~~~~~~~~V~~~~~~H~~ 152 (156)
.+||+.+.+ + +. .+. -+++.++-++++++++++|++++.-|..
T Consensus 76 ~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHil 144 (427)
T COG1236 76 GPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHIL 144 (427)
T ss_pred CceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCcc
Confidence 568887766 1 11 110 1355678899999999999999999964
No 27
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.22 E-value=1.4e-10 Score=95.45 Aligned_cols=116 Identities=17% Similarity=0.260 Sum_probs=79.1
Q ss_pred CCCeeEEEEEecCCCCCCcEEEEEE-CCeEEEEec--CchHH----------HH-HHHcC--------------C---Cc
Q psy16255 28 VPGIVNLQVLGSGARGAPKSLYLFT-DQSRYLFNC--GEGTQ----------RL-AHEHK--------------M---KL 76 (156)
Q Consensus 28 ~~~~m~l~~LGtg~~~~~~s~~I~~-~~~~iLiD~--G~g~~----------~~-l~~~~--------------~---~~ 76 (156)
.+..++++.||+ ++++|+. ++..||||. |.|.. .+ +...| + .+
T Consensus 34 ~~~~~~~~wlG~------a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i 107 (355)
T PRK11709 34 PPGTFAMWWLGC------TGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAI 107 (355)
T ss_pred CCCcEEEEEecc------eEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHC
Confidence 457789999987 5789987 578999995 32210 00 00011 1 24
Q ss_pred CCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc--ccccce---eeEEEcCCCCCeEeCCEEEEEEEcCCC
Q psy16255 77 AKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL--VSENMG---LASNSISPSDPALIQARTLMKIPLRPR 151 (156)
Q Consensus 77 ~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~--~l~~~~---~~~~~~~~~~~~~~~~~~V~~~~~~H~ 151 (156)
.+||+|||||.|.||+ +++.+.. +.......+.+++|.++ ++.... .+++++++++.+++++++|+++|..|.
T Consensus 108 ~~IDaVLiTH~H~DHl-D~~tl~~-l~~~~~~~~~~v~p~~~~~~~~~~Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h~ 185 (355)
T PRK11709 108 REIDAVLATHDHSDHI-DVNVAAA-VLQNCADHVKFIGPQACVDLWIGWGVPKERCIVVKPGDVVKVKDIKIHALDSFDR 185 (355)
T ss_pred CCCCEEEECCCccccc-ChHHHHH-HHhhcCCCcEEEEcHHHHHHHHhcCCCcceEEEecCCCcEEECCEEEEEEecccc
Confidence 6899999999999998 4544432 21111235779999987 333222 357788999999999999999999774
No 28
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.19 E-value=1.8e-11 Score=89.25 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=48.3
Q ss_pred CcEEEEEECCeEEEEecCchHHHHHH----HcCCCcCCcCeEEEcCCChhhhcChHHHHHH
Q psy16255 45 PKSLYLFTDQSRYLFNCGEGTQRLAH----EHKMKLAKLDSVFITQPVWENLGGLLGLALT 101 (156)
Q Consensus 45 ~~s~~I~~~~~~iLiD~G~g~~~~l~----~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~ 101 (156)
.+|++|+.++..+|||||.+...... ..+.+..+|++||+||.|+||++|+..+...
T Consensus 6 ~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~ 66 (194)
T PF00753_consen 6 SNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEA 66 (194)
T ss_dssp EEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHH
T ss_pred EEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccc
Confidence 58999999999999999988654332 3567788999999999999999999988764
No 29
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.13 E-value=1.1e-09 Score=96.61 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=77.3
Q ss_pred CeeEEEEEecCCCCCCcEEEEEECCeEEEEecCch----------HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHH
Q psy16255 30 GIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEG----------TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLA 99 (156)
Q Consensus 30 ~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g----------~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~ 99 (156)
...+++++-.|.+ .|++|+.+++.+|||+|+. ....+++.|++ +|++++||.|.||++|++.++
T Consensus 438 ~~~~v~~lDVGqG---daili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~---ID~lilTH~d~DHiGGl~~ll 511 (662)
T TIGR00361 438 SSWQVDMLDVGQG---LAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK---LEALILSHADQDHIGGAEIIL 511 (662)
T ss_pred CCEEEEEEecCCc---eEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC---cCEEEECCCchhhhCcHHHHH
Confidence 3579999999875 4899999889999999975 34457777773 999999999999999999887
Q ss_pred HHHhhCCCCceEEEcCcccccccceeeEEEcCCCCCeEeCCEEEEEEE
Q psy16255 100 LTIQDVGVPEINLHGPEGLVSENMGLASNSISPSDPALIQARTLMKIP 147 (156)
Q Consensus 100 ~~~~~~~~~~l~Iygp~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~ 147 (156)
..+. ...|+.|.+...+ .....++..|+.++.++++++.+.
T Consensus 512 ~~~~-----v~~i~~~~~~~~~--~~~~~~~~~G~~~~~~~~~~~vL~ 552 (662)
T TIGR00361 512 KHHP-----VKRLVIPKGFVEE--GVAIEECKRGDVWQWQGLQFHVLS 552 (662)
T ss_pred HhCC-----ccEEEeccchhhC--CCceEecCCCCEEeECCEEEEEEC
Confidence 6532 2357777653111 112344667777888888877763
No 30
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.11 E-value=1.3e-09 Score=86.04 Aligned_cols=103 Identities=14% Similarity=0.231 Sum_probs=66.0
Q ss_pred eEEEEEecCCCCCCc-EEEEEEC--CeEEEEecCch--HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCC
Q psy16255 32 VNLQVLGSGARGAPK-SLYLFTD--QSRYLFNCGEG--TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVG 106 (156)
Q Consensus 32 m~l~~LGtg~~~~~~-s~~I~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~ 106 (156)
|++..++... .+ ||+|..+ +..++||+|.. +...+.+.+. +|++||+||.|+||++|+..|...+
T Consensus 1 ~~i~~~~~~~---dNy~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~---~l~~Il~TH~H~DH~gG~~~l~~~~---- 70 (258)
T PLN02469 1 MKIIPVPCLE---DNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGA---KIKLVLTTHHHWDHAGGNEKIKKLV---- 70 (258)
T ss_pred CeEEEecccc---ceEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCC---cccEEEecCCCCccccCHHHHHHHC----
Confidence 3455665543 34 8888754 37899999853 2334444453 6899999999999999998886532
Q ss_pred CCceEEEcCcccccccceeeEEEcCCCCCeEeCC-EEEEEEEc
Q psy16255 107 VPEINLHGPEGLVSENMGLASNSISPSDPALIQA-RTLMKIPL 148 (156)
Q Consensus 107 ~~~l~Iygp~~~~l~~~~~~~~~~~~~~~~~~~~-~~V~~~~~ 148 (156)
..++||++........ .+.+..++.+.+++ ++++.+.+
T Consensus 71 -~~~~V~~~~~~~~~~~---~~~v~~gd~i~lg~~~~~~vi~t 109 (258)
T PLN02469 71 -PGIKVYGGSLDNVKGC---THPVENGDKLSLGKDVNILALHT 109 (258)
T ss_pred -CCCEEEEechhcCCCC---CeEeCCCCEEEECCceEEEEEEC
Confidence 1368998864311111 23456677777764 45555443
No 31
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.09 E-value=8.2e-10 Score=94.16 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=71.7
Q ss_pred CCcEEEEEECCeEEEEecCch-H----HHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 44 APKSLYLFTDQSRYLFNCGEG-T----QRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 44 ~~~s~~I~~~~~~iLiD~G~g-~----~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
..+||+|. +++.+|||+|.. . ..++.+ .+++.+|++|++||.|.||++|++.|+..+ +..+||+++..
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~~~~~~l~~l~~-~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-----p~a~V~~s~~~ 106 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHKFSREFVQNLRN-EIDLADIDYIVINHAEEDHAGALTELMAQI-----PDTPIYCTANA 106 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCcccHHHHHHHHHh-cCCHhhCCEEEeCCCCcchhchHHHHHHHC-----CCCEEEECHHH
Confidence 45899998 467899999853 2 222222 355678999999999999999998886532 24789998876
Q ss_pred --cccc----ceeeEEEcCCCCCeEeC-CEEEEEEEcC--CC
Q psy16255 119 --VSEN----MGLASNSISPSDPALIQ-ARTLMKIPLR--PR 151 (156)
Q Consensus 119 --~l~~----~~~~~~~~~~~~~~~~~-~~~V~~~~~~--H~ 151 (156)
.+.. ...+++.++.|+.+.++ +.+++.+.+. |.
T Consensus 107 ~~~l~~~~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~ 148 (479)
T PRK05452 107 IDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHW 148 (479)
T ss_pred HHHHHHhhcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCC
Confidence 3332 12356778889999998 4666666664 64
No 32
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.03 E-value=6.8e-09 Score=84.61 Aligned_cols=107 Identities=9% Similarity=0.105 Sum_probs=72.2
Q ss_pred eeEEEEEecCCCCCCcEEEEEEC--CeEEEEecCch--HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCC
Q psy16255 31 IVNLQVLGSGARGAPKSLYLFTD--QSRYLFNCGEG--TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVG 106 (156)
Q Consensus 31 ~m~l~~LGtg~~~~~~s~~I~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~ 106 (156)
.|+++.+-.-. + ..+|+|..+ +..++||+|.. +...+.+.+. +|++|++||.|+||++|+..|...+
T Consensus 75 ~~~i~~ip~l~-d-Ny~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~---~L~~ILlTH~H~DH~GG~~~L~~~~---- 145 (329)
T PLN02398 75 SLQIELVPCLK-D-NYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNR---NLTYILNTHHHYDHTGGNLELKARY---- 145 (329)
T ss_pred CcEEEEEeeeC-c-eEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCC---CceEEEECCCCchhhCCHHHHHHhc----
Confidence 34555555422 2 248888654 46789999864 3344555553 6899999999999999998885432
Q ss_pred CCceEEEcCccc--ccccceeeEEEcCCCCCeEeCCEEEEEEEcC-CC
Q psy16255 107 VPEINLHGPEGL--VSENMGLASNSISPSDPALIQARTLMKIPLR-PR 151 (156)
Q Consensus 107 ~~~l~Iygp~~~--~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~-H~ 151 (156)
..+||||... .+... .+.++.|+.+.+++.+++.+.+. |+
T Consensus 146 --ga~V~g~~~~~~~i~~~---d~~v~dGd~i~lgg~~l~vi~tPGHT 188 (329)
T PLN02398 146 --GAKVIGSAVDKDRIPGI---DIVLKDGDKWMFAGHEVLVMETPGHT 188 (329)
T ss_pred --CCEEEEehHHhhhccCC---cEEeCCCCEEEECCeEEEEEeCCCcC
Confidence 3789998764 33322 23467788888888888777664 54
No 33
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.02 E-value=7.7e-10 Score=93.17 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=63.3
Q ss_pred CCCeeEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHH-------HHHHcCCCcCCcCeEEEcCCChhhhcChHHHHH
Q psy16255 28 VPGIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQR-------LAHEHKMKLAKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 28 ~~~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~-------~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
...-.++++||.-..-..+|++|.+++.++|+|||-.... .+.--.+.+..+|||+|||+|.||++=||.|+.
T Consensus 177 ~~~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk 256 (637)
T COG1782 177 KDRWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK 256 (637)
T ss_pred cCceEEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh
Confidence 3455789999877665679999999999999999954322 121123444579999999999999999987753
Q ss_pred HHhhCCCCceEEEcCccc
Q psy16255 101 TIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 101 ~~~~~~~~~l~Iygp~~~ 118 (156)
+.. .-+||+.+.+
T Consensus 257 -Ygy----~GPVY~T~PT 269 (637)
T COG1782 257 -YGY----DGPVYCTPPT 269 (637)
T ss_pred -cCC----CCCeeeCCCc
Confidence 322 3479998776
No 34
>PLN02962 hydroxyacylglutathione hydrolase
Probab=98.90 E-value=3.2e-08 Score=77.98 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=65.8
Q ss_pred CCeeEEEEEecCCCCCCcEEEEEE----CCeEEEEecCch-H---HHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHH
Q psy16255 29 PGIVNLQVLGSGARGAPKSLYLFT----DQSRYLFNCGEG-T---QRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 29 ~~~m~l~~LGtg~~~~~~s~~I~~----~~~~iLiD~G~g-~---~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
.+.|-++-+=..+. ..+||+|.. .++.+|||+|.. . ...+.+.++ ++.+||+||.|+||++|+..|..
T Consensus 8 ~~~m~~~~~~~~~~-~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~---~i~~Il~TH~H~DHigg~~~l~~ 83 (251)
T PLN02962 8 SSKLLFRQLFEKES-STYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGL---KLIYAMNTHVHADHVTGTGLLKT 83 (251)
T ss_pred CCceEEEEeecCCc-eeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCC---eeEEEEcCCCCchhHHHHHHHHH
Confidence 34455555544443 347898864 357899999852 2 334445554 57899999999999999988754
Q ss_pred HHhhCCCCceEEEcCcccccccceeeEEEcCCCCCeEeCCEEEEEEEc
Q psy16255 101 TIQDVGVPEINLHGPEGLVSENMGLASNSISPSDPALIQARTLMKIPL 148 (156)
Q Consensus 101 ~~~~~~~~~l~Iygp~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~~~ 148 (156)
.+ ..+++|.++..- .... +.+++++.+.+++++++.+.+
T Consensus 84 ~~-----~~a~v~~~~~~~---~~~d-~~l~~g~~i~~g~~~l~vi~t 122 (251)
T PLN02962 84 KL-----PGVKSIISKASG---SKAD-LFVEPGDKIYFGDLYLEVRAT 122 (251)
T ss_pred HC-----CCCeEEeccccC---CCCC-EEeCCCCEEEECCEEEEEEEC
Confidence 32 124566544321 0111 235666777777777666554
No 35
>KOG1136|consensus
Probab=98.89 E-value=3.6e-09 Score=85.55 Aligned_cols=74 Identities=18% Similarity=0.281 Sum_probs=55.9
Q ss_pred eeEEEEEecCCCCCCcEEEEEECCeEEEEecCc--hHH--HH------HHHcCCCcCCcCeEEEcCCChhhhcChHHHHH
Q psy16255 31 IVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGE--GTQ--RL------AHEHKMKLAKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 31 ~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~--g~~--~~------l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
.++++.||.|..-..+|++|..+++.++||||- |+. |+ +...|---+-||.|+|||+|.||++.||.+-.
T Consensus 3 ~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsE 82 (501)
T KOG1136|consen 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSE 82 (501)
T ss_pred cceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHh
Confidence 478999999998777999999999999999984 221 11 11122112468999999999999999998866
Q ss_pred HHhh
Q psy16255 101 TIQD 104 (156)
Q Consensus 101 ~~~~ 104 (156)
-...
T Consensus 83 v~GY 86 (501)
T KOG1136|consen 83 VVGY 86 (501)
T ss_pred hhCC
Confidence 5443
No 36
>PRK11539 ComEC family competence protein; Provisional
Probab=98.89 E-value=2.3e-08 Score=89.59 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=70.5
Q ss_pred CCeeEEEEEecCCCCCCcEEEEEECCeEEEEecCchH----------HHHHHHcCCCcCCcCeEEEcCCChhhhcChHHH
Q psy16255 29 PGIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGT----------QRLAHEHKMKLAKLDSVFITQPVWENLGGLLGL 98 (156)
Q Consensus 29 ~~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~----------~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l 98 (156)
+..+++++|-.|.+ .|++|+.+++.+|||+|.+. ...+++.|+ ++|++++||.|.||++|++.+
T Consensus 498 ~~~~~v~~lDVGqG---~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi---~lD~lilSH~d~DH~GGl~~L 571 (755)
T PRK11539 498 EYEWRVDMLDVGHG---LAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL---TPEGIILSHEHLDHRGGLASL 571 (755)
T ss_pred CCcEEEEEEEccCc---eEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC---CcCEEEeCCCCcccCCCHHHH
Confidence 45689999999875 48899999999999999741 224566676 399999999999999999998
Q ss_pred HHHHhhCCCCceEEEcCcccccccceeeEEEcCCCCCeEeCCEEEEEE
Q psy16255 99 ALTIQDVGVPEINLHGPEGLVSENMGLASNSISPSDPALIQARTLMKI 146 (156)
Q Consensus 99 ~~~~~~~~~~~l~Iygp~~~~l~~~~~~~~~~~~~~~~~~~~~~V~~~ 146 (156)
+..+ +...||.|.... ...++..|+.++.++++++.+
T Consensus 572 l~~~-----~~~~i~~~~~~~------~~~~~~~g~~~~~~~~~~~vL 608 (755)
T PRK11539 572 LHAW-----PMAWIRSPLNWA------NHLPCVRGEQWQWQGLTFSVH 608 (755)
T ss_pred HHhC-----CcceeeccCccc------CcccccCCCeEeECCEEEEEE
Confidence 7653 235677764220 011233455555666655554
No 37
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.87 E-value=3.1e-08 Score=79.53 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=78.9
Q ss_pred eEEEEEecCCCCCCcEEEEEECCeEEEEecCc--hH---HHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCC
Q psy16255 32 VNLQVLGSGARGAPKSLYLFTDQSRYLFNCGE--GT---QRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVG 106 (156)
Q Consensus 32 m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~--g~---~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~ 106 (156)
.++.++=+|.+ .+++++.++..+++|.|. +- ...|++.|+ .+||.+++||.|.||++|++.++.++.
T Consensus 44 ~~~~~lDvGqg---~a~li~~~~~~~l~dtg~~~~~~~iip~Lk~~GV--~~iD~lIlTH~d~DHiGg~~~vl~~~~--- 115 (293)
T COG2333 44 WKVHMLDVGQG---LATLIRSEGKTILYDTGNSMGQDVIIPYLKSLGV--RKLDQLILTHPDADHIGGLDEVLKTIK--- 115 (293)
T ss_pred ceEEEEEcCCC---eEEEEeeCCceEEeecCcccCceeehhhHhHcCC--ccccEEEeccCCccccCCHHHHHhhCC---
Confidence 67888888774 478999999999999998 32 345777776 589999999999999999999987653
Q ss_pred CCceEEEcCccc----ccccceeeEEEcCCCCCeEeCCEEEEEE
Q psy16255 107 VPEINLHGPEGL----VSENMGLASNSISPSDPALIQARTLMKI 146 (156)
Q Consensus 107 ~~~l~Iygp~~~----~l~~~~~~~~~~~~~~~~~~~~~~V~~~ 146 (156)
.+.+.++.+... .++........+..|+.+..+++.++.+
T Consensus 116 v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~f~vl 159 (293)
T COG2333 116 VPELWIYAGSDSTSTFVLRDAGIPVRSCKAGDSWQWGGVVFQVL 159 (293)
T ss_pred CCcEEEeCCCCccchhhhhhcCCceeccccCceEEECCeEEEEE
Confidence 246777777654 1222234455566677777777776653
No 38
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.83 E-value=1.9e-08 Score=82.13 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=58.2
Q ss_pred eEEEEEecCCC---CCCcEEEEEEC--CeEEEEecCchHHH---HHHHcCCC------------------------cCCc
Q psy16255 32 VNLQVLGSGAR---GAPKSLYLFTD--QSRYLFNCGEGTQR---LAHEHKMK------------------------LAKL 79 (156)
Q Consensus 32 m~l~~LGtg~~---~~~~s~~I~~~--~~~iLiD~G~g~~~---~l~~~~~~------------------------~~~i 79 (156)
+.+.+||++++ ++.++++++.. +..+-+|+|..... ...+.... ...|
T Consensus 1 f~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I 80 (335)
T PF02112_consen 1 FQVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHI 80 (335)
T ss_pred CeEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhh
Confidence 46889999998 56789999864 46677899975432 22222110 1367
Q ss_pred CeEEEcCCChhhhcChHHHHHHHhhCCC--CceEEEcCccc
Q psy16255 80 DSVFITQPVWENLGGLLGLALTIQDVGV--PEINLHGPEGL 118 (156)
Q Consensus 80 ~~IfiTH~H~DHi~GL~~l~~~~~~~~~--~~l~Iygp~~~ 118 (156)
.+.||||.|.||++||- +.+-.+... .+-+|||-+.+
T Consensus 81 ~~ylItH~HLDHi~gLv--insp~~~~~~~~~K~i~gl~~t 119 (335)
T PF02112_consen 81 KGYLITHPHLDHIAGLV--INSPEDYLPNSSPKTIYGLPST 119 (335)
T ss_pred heEEecCCchhhHHHHH--hcCcccccccCCCCcEEECHHH
Confidence 89999999999999993 333323221 46789998887
No 39
>KOG2121|consensus
Probab=98.82 E-value=1e-09 Score=95.59 Aligned_cols=105 Identities=48% Similarity=0.878 Sum_probs=85.3
Q ss_pred HHHHHHHHhhhcC--CCCCeeEEEEEecC--CCCCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCCh
Q psy16255 14 KFQRVKMREKSMK--YVPGIVNLQVLGSG--ARGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVW 89 (156)
Q Consensus 14 ~~~r~~~~~~~~~--~~~~~m~l~~LGtg--~~~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~ 89 (156)
++.+.+..++... ..++-+.++++|+| +.....+++...+.+++++.||+|+++.+.+.++...+++.||+|-.+|
T Consensus 29 ~~~~~~l~~~~~s~~~~~~~~~~~I~~~~~dt~~s~~~~~~~~~~~~~~~n~Geg~qr~~~ehk~~~sk~~~iflt~~~w 108 (746)
T KOG2121|consen 29 RRAKASLKRGAQSLNPTNTIRYLQISGSGMDTQDSPLSVYLFDDRKRFIFNCGEGTQRLLTEHKIKLSKLDSIFLTRVCW 108 (746)
T ss_pred hhhhhhcccccccCCCCceEEEEEEecCcccccccchhhhhhcchhhhhhhhhHHHHHHHHHhhhhhhhhhheEeecccH
Confidence 3444444444333 34457899999999 4445556666667789999999999999999999999999999999999
Q ss_pred hhhcChHHHHHHHhhCCCC-ceEEEcCccc
Q psy16255 90 ENLGGLLGLALTIQDVGVP-EINLHGPEGL 118 (156)
Q Consensus 90 DHi~GL~~l~~~~~~~~~~-~l~Iygp~~~ 118 (156)
+-++|||+++.++.+.+.+ ++.+|||+.+
T Consensus 109 ~~~GglpGl~ltl~~~G~~g~~~l~gP~~l 138 (746)
T KOG2121|consen 109 SSCGGLPGLLLTLADIGEPGPVVLHGPSDL 138 (746)
T ss_pred HHhCCCccceeehhhcCCCCcccccCchhH
Confidence 9999999999998888776 8999999998
No 40
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.82 E-value=7.1e-08 Score=73.56 Aligned_cols=69 Identities=16% Similarity=0.276 Sum_probs=46.2
Q ss_pred CCeeEEEEEecCCCCCCcEEEEEECC-eEEEEecCchHH--H----HHHHcCCCcCCcCeEEEcCCChhhhcChHHHHH
Q psy16255 29 PGIVNLQVLGSGARGAPKSLYLFTDQ-SRYLFNCGEGTQ--R----LAHEHKMKLAKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 29 ~~~m~l~~LGtg~~~~~~s~~I~~~~-~~iLiD~G~g~~--~----~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
...+.....+.......+++++..++ ..+|||+|.+.. . .+...+. +|++|++||.|.||++|+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~---~i~~vilTH~H~DH~gg~~~~~~ 84 (252)
T COG0491 9 LDGITAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGL---DVDAILLTHGHFDHIGGAAVLKE 84 (252)
T ss_pred ccccEEEEecCcccccccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCC---ChheeeecCCchhhhccHHHHHh
Confidence 34445555553333444555555555 799999997752 2 3333443 79999999999999999977754
No 41
>KOG1137|consensus
Probab=98.81 E-value=2.6e-09 Score=90.67 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCCeeEEEEEecCCCCCCcEEEEEECCeEEEEecCc--hHHH--HH-HHcCCCcCCcCeEEEcCCChhhhcChHHHHHH
Q psy16255 28 VPGIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGE--GTQR--LA-HEHKMKLAKLDSVFITQPVWENLGGLLGLALT 101 (156)
Q Consensus 28 ~~~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~--g~~~--~l-~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~ 101 (156)
....+.++.||.|..-..+|.++++.++++++|||. +... .+ .-.-++++++|.++|||+|.||++.||.+++.
T Consensus 10 ~~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qk 88 (668)
T KOG1137|consen 10 NSDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQK 88 (668)
T ss_pred CCCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeee
Confidence 467789999999987777999999999999999994 2211 11 11247889999999999999999999988763
No 42
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.65 E-value=1.5e-07 Score=73.92 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=78.4
Q ss_pred CCeeEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHHHHH-----HcCCCcCCcCeEEEcCCChhhhcChHHHHHHHh
Q psy16255 29 PGIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRLAH-----EHKMKLAKLDSVFITQPVWENLGGLLGLALTIQ 103 (156)
Q Consensus 29 ~~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~~l~-----~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~ 103 (156)
...|+++.+|. +|++|+.++.++|||+.-+-..... .....+..+|+|+|||.|.||+..- .++...
T Consensus 4 ~~~m~itwlGh------a~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~-~~~~~~- 75 (258)
T COG2220 4 AEDMKITWLGH------AAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDE-TLIALR- 75 (258)
T ss_pred CcCceEEEecc------eEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHH-HHHHHh-
Confidence 45789999997 6899999999999998543211000 0112245789999999999999854 333221
Q ss_pred hCCCCceEEEcCccc--cccc---ceeeEEEcCCCCCeEeCCEEEEEEEcCCCCC
Q psy16255 104 DVGVPEINLHGPEGL--VSEN---MGLASNSISPSDPALIQARTLMKIPLRPRLP 153 (156)
Q Consensus 104 ~~~~~~l~Iygp~~~--~l~~---~~~~~~~~~~~~~~~~~~~~V~~~~~~H~~p 153 (156)
..+...++.|.+. .+.. -..+++.+..+..++.++++|+.+++.|...
T Consensus 76 --~~~~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~ 128 (258)
T COG2220 76 --TNKAPVVVVPLGAGDLLIRDGVEAERVHELGWGDVIELGDLEITAVPAYHVSA 128 (258)
T ss_pred --cCCCcEEEeHHHHHHHHHhcCCCcceEEeecCCceEEecCcEEEEEEeecccc
Confidence 1123567788775 2212 1234677788889999999999999988643
No 43
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.60 E-value=3.5e-07 Score=75.68 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCCcEEEEEECCeEEEEec-CchHHHHHHH---cCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 43 GAPKSLYLFTDQSRYLFNC-GEGTQRLAHE---HKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 43 ~~~~s~~I~~~~~~iLiD~-G~g~~~~l~~---~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
-+.|||+|. +++.+|||. |+++...+.+ .-+++.+||+|+++|.-.||.+.++.++... +..+|+++.-.
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~-----p~a~ii~s~~~ 107 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELA-----PNAKIICSKLA 107 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhC-----CCCEEEeeHHH
Confidence 345899999 899999996 4566554433 3578899999999999999999999987543 35788888765
Q ss_pred --ccccc---eeeEEEcCCCCCeEeCCEEEEEEEc
Q psy16255 119 --VSENM---GLASNSISPSDPALIQARTLMKIPL 148 (156)
Q Consensus 119 --~l~~~---~~~~~~~~~~~~~~~~~~~V~~~~~ 148 (156)
+++.+ ...+..++.|+.+.+|+-+++.+++
T Consensus 108 ~~~L~~~~~~~~~~~ivk~Gd~ldlGg~tL~Fi~a 142 (388)
T COG0426 108 ARFLKGFYHDPEWFKIVKTGDTLDLGGHTLKFIPA 142 (388)
T ss_pred HHHHHHhcCCccceeecCCCCEeccCCcEEEEEeC
Confidence 55432 1226778899999999877777655
No 44
>KOG0813|consensus
Probab=98.55 E-value=6.2e-07 Score=70.80 Aligned_cols=98 Identities=9% Similarity=0.049 Sum_probs=61.2
Q ss_pred CcEEEEEECCeEEEE---ecCch--HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCcccc
Q psy16255 45 PKSLYLFTDQSRYLF---NCGEG--TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGLV 119 (156)
Q Consensus 45 ~~s~~I~~~~~~iLi---D~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~~ 119 (156)
..+|+|..++...+. |+.+- +...+.+..-...++.+||.||.||||++|+..+...+. ..+.+||...--
T Consensus 13 Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~----~~~~v~g~~~~r 88 (265)
T KOG0813|consen 13 NYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIP----YDIKVIGGADDR 88 (265)
T ss_pred ceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhcc----CCcEEecCChhc
Confidence 357888765555544 44332 222233211123468999999999999999998865432 358888874111
Q ss_pred cccceeeEEEcCCCCCeEeCCEEEEEEEcC
Q psy16255 120 SENMGLASNSISPSDPALIQARTLMKIPLR 149 (156)
Q Consensus 120 l~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 149 (156)
...+. +.++.++.+.+++.+|+++.+.
T Consensus 89 ~~~i~---~~~~~~e~~~~~g~~v~~l~TP 115 (265)
T KOG0813|consen 89 IPGIT---RGLKDGETVTVGGLEVRCLHTP 115 (265)
T ss_pred Ccccc---ccCCCCcEEEECCEEEEEEeCC
Confidence 11111 1256778889999999988764
No 45
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.48 E-value=3e-07 Score=67.31 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=36.0
Q ss_pred EEEEEecCCCCCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcC
Q psy16255 33 NLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGG 94 (156)
Q Consensus 33 ~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~G 94 (156)
+|+.||. +|++|+.++.++|+|+..... .......++|+|||||.|.||+..
T Consensus 1 ~It~lgh------a~~~ie~~g~~iliDP~~~~~----~~~~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 1 KITWLGH------ASFLIETGGKRILIDPWFSSV----GYAPPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EEEEEET------TEEEEEETTEEEEES--TTT------T-TSS-B-SEEEESSSSTTT-CC
T ss_pred CEEEEEe------eEEEEEECCEEEEECCCCCcc----CcccccCCCCEEEECCCccccCCh
Confidence 5788886 699999999999999985411 011124689999999999999986
No 46
>KOG1135|consensus
Probab=98.38 E-value=3.3e-06 Score=73.61 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=58.3
Q ss_pred EEEEecCCCCCCcEEEEEECCeEEEEecCchHHH--HH-HHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCce
Q psy16255 34 LQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQR--LA-HEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEI 110 (156)
Q Consensus 34 l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~--~l-~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l 110 (156)
.++.|.+. .++.|++|+.++.++|||||-+-.. ++ ....--...||+|+|||...-|+||||+.+..... .+
T Consensus 5 ~~~~g~~d-e~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl----~~ 79 (764)
T KOG1135|consen 5 TTLCGATD-EGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGL----NA 79 (764)
T ss_pred EeeccccC-CCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCc----cc
Confidence 34455444 5567999999999999999976432 22 22222346899999999999999999988766544 27
Q ss_pred EEEcCccc
Q psy16255 111 NLHGPEGL 118 (156)
Q Consensus 111 ~Iygp~~~ 118 (156)
+||+.-.+
T Consensus 80 ~VYAT~PV 87 (764)
T KOG1135|consen 80 PVYATLPV 87 (764)
T ss_pred eEEEecch
Confidence 88887665
No 47
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.15 E-value=1.6e-06 Score=68.64 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=53.9
Q ss_pred CCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc--ccc----------cc------eeeEEEcCCCCC--e
Q psy16255 77 AKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL--VSE----------NM------GLASNSISPSDP--A 136 (156)
Q Consensus 77 ~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~--~l~----------~~------~~~~~~~~~~~~--~ 136 (156)
..|...||||.|.|||.|+- +.+.....+++-+|||-+.+ .++ ++ .+++..++|... .
T Consensus 111 Q~I~~y~ITH~HLDHIsGlV--inSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHISGLV--INSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchhcee--ecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeee
Confidence 57889999999999999993 33333333456799998877 222 11 356777777654 3
Q ss_pred EeCCEEEEEEEcCCCCCC
Q psy16255 137 LIQARTLMKIPLRPRLPL 154 (156)
Q Consensus 137 ~~~~~~V~~~~~~H~~p~ 154 (156)
.+-.+++.|||++|+...
T Consensus 189 t~t~l~~~pfpv~Hg~kt 206 (356)
T COG5212 189 TLTRLTGEPFPVSHGKKT 206 (356)
T ss_pred eeeeecceeeeccCCccc
Confidence 445688999999998743
No 48
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=97.82 E-value=1.5e-05 Score=62.50 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=72.4
Q ss_pred eEEEEEecCCCCC-CcEEEEEECCeEEEEecCchHH----------H---HHHHc----CCCcCCcCeEEEcCCChhhhc
Q psy16255 32 VNLQVLGSGARGA-PKSLYLFTDQSRYLFNCGEGTQ----------R---LAHEH----KMKLAKLDSVFITQPVWENLG 93 (156)
Q Consensus 32 m~l~~LGtg~~~~-~~s~~I~~~~~~iLiD~G~g~~----------~---~l~~~----~~~~~~i~~IfiTH~H~DHi~ 93 (156)
|++..+++-|-+. +-|.+|++.+-.+|||+|-... + +|.+. .--..+.+-|.|||.|.||..
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHht 80 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHT 80 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCC
Confidence 6788888777544 3588999999999999996531 1 12111 111246788999999999998
Q ss_pred ChH-HHHHHHhhCCCCceEEEcCcccc-------------------cccce-e-eEEEcCCCCCeEeCCEEEEE-EEcCC
Q psy16255 94 GLL-GLALTIQDVGVPEINLHGPEGLV-------------------SENMG-L-ASNSISPSDPALIQARTLMK-IPLRP 150 (156)
Q Consensus 94 GL~-~l~~~~~~~~~~~l~Iygp~~~~-------------------l~~~~-~-~~~~~~~~~~~~~~~~~V~~-~~~~H 150 (156)
-+. ++.... ....-.||+.+-++ ++++. + .-.++.++..|++++.+|+. -|+.|
T Consensus 81 Pf~~~~y~~s---~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpH 157 (304)
T COG2248 81 PFFDGIYEAS---GETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPH 157 (304)
T ss_pred ccccchhhhc---ccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCC
Confidence 732 222221 11223344444331 11111 1 22345678899999999877 56777
Q ss_pred CCC
Q psy16255 151 RLP 153 (156)
Q Consensus 151 ~~p 153 (156)
+..
T Consensus 158 G~e 160 (304)
T COG2248 158 GRE 160 (304)
T ss_pred CCc
Confidence 654
No 49
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.89 E-value=0.0016 Score=55.52 Aligned_cols=72 Identities=13% Similarity=0.205 Sum_probs=49.3
Q ss_pred cEEEEEECCeEEEEec--CchHHHH-H--HHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 46 KSLYLFTDQSRYLFNC--GEGTQRL-A--HEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 46 ~s~~I~~~~~~iLiD~--G~g~~~~-l--~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
+-.+|+.+...|+||+ -+.+.+. | ......-..|.+|+-||.|.||++|..+++..... ...++.|.+|.+.
T Consensus 127 NITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV-~sGkV~iiAP~GF 203 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADV-KSGKVQIIAPAGF 203 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHc-ccCceeEecchhH
Confidence 4556666667888996 3333332 2 22223335689999999999999999999754322 2347999999986
No 50
>KOG1361|consensus
Probab=96.71 E-value=0.0011 Score=56.49 Aligned_cols=67 Identities=10% Similarity=0.031 Sum_probs=48.5
Q ss_pred CcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc---cccccee---eEEEcCCCCCeEeCCEEEEEEEcCCC
Q psy16255 78 KLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL---VSENMGL---ASNSISPSDPALIQARTLMKIPLRPR 151 (156)
Q Consensus 78 ~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~---~l~~~~~---~~~~~~~~~~~~~~~~~V~~~~~~H~ 151 (156)
...+-|+||+|.||..||..- |. .-++|+..-+ +...+.+ ..+.++-++.+.+.++.|+.++.+|.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~s---W~-----~p~lYCS~ita~Lv~~~~~v~~~~i~~l~l~~~~~i~~~~vt~ldAnHC 183 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKS---WS-----HPPLYCSPITARLVPLKVSVTKQSIQALDLNQPLEIPGIQVTLLDANHC 183 (481)
T ss_pred ccceeeeeccccccccccccc---cc-----CCcccccccchhhhhhhcccChhhceeecCCCceeecceEEEEeccccC
Confidence 567899999999999998422 11 1239998876 2222222 24556778889999999999999996
Q ss_pred C
Q psy16255 152 L 152 (156)
Q Consensus 152 ~ 152 (156)
.
T Consensus 184 P 184 (481)
T KOG1361|consen 184 P 184 (481)
T ss_pred C
Confidence 4
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=95.77 E-value=0.052 Score=40.92 Aligned_cols=92 Identities=9% Similarity=0.106 Sum_probs=47.4
Q ss_pred cEEEEEECCeEEEEecCchHH---HHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccccccc
Q psy16255 46 KSLYLFTDQSRYLFNCGEGTQ---RLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGLVSEN 122 (156)
Q Consensus 46 ~s~~I~~~~~~iLiD~G~g~~---~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~~l~~ 122 (156)
+|+++..++..+|||+-+=.. ..+.+. ..+..|+|||. ||+.....+...+ ...||+|.+-. +.
T Consensus 24 ng~~~~~p~GnilIDP~~ls~~~~~~l~a~----ggv~~IvLTn~--dHvR~A~~ya~~~------~a~i~~p~~d~-~~ 90 (199)
T PF14597_consen 24 NGHAWRRPEGNILIDPPPLSAHDWKHLDAL----GGVAWIVLTNR--DHVRAAEDYAEQT------GAKIYGPAADA-AQ 90 (199)
T ss_dssp EEEEE--TT--EEES-----HHHHHHHHHT----T--SEEE-SSG--GG-TTHHHHHHHS--------EEEEEGGGC-CC
T ss_pred eeEEEEcCCCCEEecCccccHHHHHHHHhc----CCceEEEEeCC--hhHhHHHHHHHHh------CCeeeccHHHH-hh
Confidence 688888899999999876543 344444 36899999986 9999998776543 47899998762 11
Q ss_pred ceeeE-EEcCCCCCeEeCCEEEEEEEcCCC
Q psy16255 123 MGLAS-NSISPSDPALIQARTLMKIPLRPR 151 (156)
Q Consensus 123 ~~~~~-~~~~~~~~~~~~~~~V~~~~~~H~ 151 (156)
+++.. +.+..|+ -..++++|..++-.|+
T Consensus 91 ~p~~~D~~l~dge-~i~~g~~vi~l~G~kt 119 (199)
T PF14597_consen 91 FPLACDRWLADGE-EIVPGLWVIHLPGSKT 119 (199)
T ss_dssp -SS--SEEE-TT--BSSTTEEEEEE-SSSS
T ss_pred CCCCCccccccCC-CccCceEEEEcCCCCC
Confidence 22111 2233443 3346777777776654
No 52
>KOG3592|consensus
Probab=94.47 E-value=0.025 Score=50.41 Aligned_cols=52 Identities=25% Similarity=0.345 Sum_probs=38.2
Q ss_pred EEEEEECCeEEEEecCch----HHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHH
Q psy16255 47 SLYLFTDQSRYLFNCGEG----TQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTI 102 (156)
Q Consensus 47 s~~I~~~~~~iLiD~G~g----~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~ 102 (156)
+.+.-+++-.+|+|-|.. ++... + -+.+|++|+|||.-.|...|+.+|+++.
T Consensus 50 aALFavnGf~iLv~GgserKS~fwklV-r---HldrVdaVLLthpg~dNLpginsllqrk 105 (934)
T KOG3592|consen 50 AALFAVNGFNILVNGGSERKSCFWKLV-R---HLDRVDAVLLTHPGADNLPGINSLLQRK 105 (934)
T ss_pred ceeEeecceEEeecCCcccccchHHHH-H---HHhhhhhhhhcccccCccccchHHHHHH
Confidence 445556788888887764 22222 2 1357999999999999999999998754
No 53
>KOG0814|consensus
Probab=92.88 E-value=0.31 Score=36.76 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=33.7
Q ss_pred EEEEEE--CCeEEEEecCchHH----HHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHH
Q psy16255 47 SLYLFT--DQSRYLFNCGEGTQ----RLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALT 101 (156)
Q Consensus 47 s~~I~~--~~~~iLiD~G~g~~----~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~ 101 (156)
+|++-. .++.+|||+=-.+. ..+.++|++ +.+-+=||.|.||+.|- +++.+
T Consensus 23 tYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~---LiYa~NTH~HADHiTGt-g~Lkt 79 (237)
T KOG0814|consen 23 TYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLD---LIYALNTHVHADHITGT-GLLKT 79 (237)
T ss_pred EEEeeeCCCCceEEecchhhcccchHHHHHhcCce---eeeeecceeeccccccc-chHHH
Confidence 455543 35788999744332 234556664 56778999999999998 45444
No 54
>KOG4736|consensus
Probab=91.08 E-value=0.28 Score=39.53 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=39.9
Q ss_pred EEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChH
Q psy16255 47 SLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLL 96 (156)
Q Consensus 47 s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~ 96 (156)
..++..++..+++|.|-+ .|.+.++.+++|+.+.+||.|.+|++++.
T Consensus 97 ~tl~~d~~~v~v~~~gls---~lak~~vt~d~i~~vv~t~~~~~hlgn~~ 143 (302)
T KOG4736|consen 97 ITLVVDGGDVVVVDTGLS---VLAKEGVTLDQIDSVVITHKSPGHLGNNN 143 (302)
T ss_pred cceeecCCceEEEecCCc---hhhhcCcChhhcceeEEeccCcccccccc
Confidence 445666678899999988 55677899999999999999999999994
No 55
>KOG3798|consensus
Probab=63.44 E-value=5.1 Score=32.09 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=40.9
Q ss_pred cEEEEEECCeEEEEec-----------CchHHHHHHHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEc
Q psy16255 46 KSLYLFTDQSRYLFNC-----------GEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHG 114 (156)
Q Consensus 46 ~s~~I~~~~~~iLiD~-----------G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iyg 114 (156)
+|+++..++-+++=|. |+.-.+...+..-++.+++-+.+||.|.||.. +..+.. + .++.+..-++
T Consensus 89 a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld-~~~~~~-~--~~~~~~~wfv 164 (343)
T KOG3798|consen 89 ATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLD-ADAVKK-I--TDRNPQIWFV 164 (343)
T ss_pred eeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccc-hHHHHh-h--hccCccceee
Confidence 5777776665555443 33222333333346778999999999999986 334432 1 1233333667
Q ss_pred Cccc
Q psy16255 115 PEGL 118 (156)
Q Consensus 115 p~~~ 118 (156)
|.+.
T Consensus 165 p~g~ 168 (343)
T KOG3798|consen 165 PLGM 168 (343)
T ss_pred hhhh
Confidence 8776
No 56
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=59.73 E-value=10 Score=29.06 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=17.2
Q ss_pred cEEEEEECCeEEEEecCchHH
Q psy16255 46 KSLYLFTDQSRYLFNCGEGTQ 66 (156)
Q Consensus 46 ~s~~I~~~~~~iLiD~G~g~~ 66 (156)
-+++|..+++.||+|+|-|..
T Consensus 89 ~~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 89 LVLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp EEEEEEETTEEEEE-SSSTTC
T ss_pred EEEEEEECCEEEEEeccCCCc
Confidence 477888999999999998875
No 57
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=47.88 E-value=77 Score=26.59 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=57.2
Q ss_pred HHHHHhhhcCCCCCeeEEEEEecCCC----------CCCcEEEEEEC------------CeEEEEecCc-----hHHHHH
Q psy16255 17 RVKMREKSMKYVPGIVNLQVLGSGAR----------GAPKSLYLFTD------------QSRYLFNCGE-----GTQRLA 69 (156)
Q Consensus 17 r~~~~~~~~~~~~~~m~l~~LGtg~~----------~~~~s~~I~~~------------~~~iLiD~G~-----g~~~~l 69 (156)
|.+..+-...+..+.+++-.+||.|+ +..+..+++-+ ++.+++|--. ..+..|
T Consensus 3 ~~~~~~~~~~y~~~~~~i~t~~SHsal~i~~gAk~egf~t~~v~~~~r~~~Y~~f~~~~d~~i~~~~f~~~~~~~~~~~l 82 (366)
T PRK13277 3 RKEIKEILEGYDLDKVKIGVLASHSALDVFDGAKDEGFRTIAVCQKGRERTYREFKGIVDEVIVLDKFKDILSEKVQDEL 82 (366)
T ss_pred hHHHHHHHhhcCccccEEEEEecchHHHHhccHHhcCCcEEEEEcCCCcchhhhhccccceEEEecchhhhhhHHHHHHH
Confidence 55566666667778899999999998 22344433322 4556666322 333333
Q ss_pred HHcCCCcCCcCeEEEcCCChhhhcChHHHHHHHhhCCCCceEEEcCccc
Q psy16255 70 HEHKMKLAKLDSVFITQPVWENLGGLLGLALTIQDVGVPEINLHGPEGL 118 (156)
Q Consensus 70 ~~~~~~~~~i~~IfiTH~H~DHi~GL~~l~~~~~~~~~~~l~Iygp~~~ 118 (156)
. +-++|||-|...=-..|...+-..+ +++++|+..+
T Consensus 83 ~-------~~n~i~iPh~sf~~y~g~~~ie~~~------~vp~fGnr~~ 118 (366)
T PRK13277 83 R-------EENAIFVPNRSFAVYVGYDAIENEF------KVPIFGNRYL 118 (366)
T ss_pred H-------HCCeEEecCCCeEEEecHHHHhhcC------CCCcccCHHH
Confidence 3 4579999999888888887663222 4678888776
No 58
>PF05162 Ribosomal_L41: Ribosomal protein L41; InterPro: IPR007836 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L41 associates with the ribonucleoprotein particles of the 60S subunit late in the ribosomal maturation process. L41 is encoded by the smallest known open reading frame and in yeast is composed of only 24 amino acids, 17 of which are arginine or lysine.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_q 3IZR_q.
Probab=44.65 E-value=11 Score=18.67 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHhhh
Q psy16255 11 QNLKFQRVKMREKS 24 (156)
Q Consensus 11 ~~~~~~r~~~~~~~ 24 (156)
..+|+.|++++++|
T Consensus 11 rRlkrkRRkmRqRs 24 (25)
T PF05162_consen 11 RRLKRKRRKMRQRS 24 (25)
T ss_dssp HHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHcc
Confidence 35778888888765
No 59
>PRK14627 hypothetical protein; Provisional
Probab=36.62 E-value=1.1e+02 Score=20.59 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=19.6
Q ss_pred CchhhHHHHHhhhHHHHHHHHhhhcC
Q psy16255 1 MSGNKVMQHAQNLKFQRVKMREKSMK 26 (156)
Q Consensus 1 ~~~~~~~~~~~~~~~~r~~~~~~~~~ 26 (156)
|.=++.|+.+|..|++=.+.|++-..
T Consensus 1 mn~~~~mkqaq~mQ~km~~~Q~el~~ 26 (100)
T PRK14627 1 MNQRQLMQMAQQMQRQMQKVQEELAA 26 (100)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45578899999988887777776554
No 60
>KOG1137|consensus
Probab=35.01 E-value=1.4e+02 Score=26.78 Aligned_cols=84 Identities=15% Similarity=0.058 Sum_probs=48.3
Q ss_pred eEEEEEecCCCCCCcEEEEEECCeEEEEecCc---hHHHHHHHcCCCc--------CCcCeEEEcCCChhhhcChHHHHH
Q psy16255 32 VNLQVLGSGARGAPKSLYLFTDQSRYLFNCGE---GTQRLAHEHKMKL--------AKLDSVFITQPVWENLGGLLGLAL 100 (156)
Q Consensus 32 m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~---g~~~~l~~~~~~~--------~~i~~IfiTH~H~DHi~GL~~l~~ 100 (156)
+++..++.|--.....++++..+- .|++.|. .-.|.+.+.-++. .++.++-++|.|.||.+-|+.++.
T Consensus 151 Ikf~p~~aGhVlgacMf~veiagv-~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh 229 (668)
T KOG1137|consen 151 IKFWPYHAGHVLGACMFMVEIAGV-RLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIH 229 (668)
T ss_pred eEEEeeccchhhhheeeeeeeceE-EEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHH
Confidence 556666643322223455566554 4555554 3344454443332 355677888899999999999887
Q ss_pred HHhhC-CCCceEEEcCc
Q psy16255 101 TIQDV-GVPEINLHGPE 116 (156)
Q Consensus 101 ~~~~~-~~~~l~Iygp~ 116 (156)
+.-.. ++--++|++--
T Consensus 230 ~~v~rGGR~L~PvFAlg 246 (668)
T KOG1137|consen 230 STVPRGGRVLIPVFALG 246 (668)
T ss_pred hhccCCCceEeeeeecc
Confidence 55333 23346666644
No 61
>KOG4752|consensus
Probab=34.73 E-value=37 Score=16.76 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHhhhc
Q psy16255 11 QNLKFQRVKMREKSM 25 (156)
Q Consensus 11 ~~~~~~r~~~~~~~~ 25 (156)
..+||.|+++++++.
T Consensus 11 rrlkrkrr~~~~rsk 25 (26)
T KOG4752|consen 11 RRLKRKRRKMRARSK 25 (26)
T ss_pred HHHHHHHHHHHhhcc
Confidence 346777777776653
No 62
>KOG0651|consensus
Probab=33.43 E-value=1.4e+02 Score=24.90 Aligned_cols=73 Identities=21% Similarity=0.438 Sum_probs=43.2
Q ss_pred cEEEEE-ECCeEEEEecCchHHHHHHHcCCCcC-CcCeEEE--------------cC-----CChhhhcChHHHHHHHhh
Q psy16255 46 KSLYLF-TDQSRYLFNCGEGTQRLAHEHKMKLA-KLDSVFI--------------TQ-----PVWENLGGLLGLALTIQD 104 (156)
Q Consensus 46 ~s~~I~-~~~~~iLiD~G~g~~~~l~~~~~~~~-~i~~Ifi--------------TH-----~H~DHi~GL~~l~~~~~~ 104 (156)
..+.|. +++.+|++-|+....+.-...|.+.. ++..++| +| ...||++|+...+..+..
T Consensus 67 ~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre 146 (388)
T KOG0651|consen 67 EKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELRE 146 (388)
T ss_pred cceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHh
Confidence 467775 46788998888765443222222211 1222222 22 378999999888776543
Q ss_pred C--------------C-C--CceEEEcCccc
Q psy16255 105 V--------------G-V--PEINLHGPEGL 118 (156)
Q Consensus 105 ~--------------~-~--~~l~Iygp~~~ 118 (156)
. + + .-+-+|||+++
T Consensus 147 ~ielpl~np~lf~rvgIk~Pkg~ll~GppGt 177 (388)
T KOG0651|consen 147 VIELPLTNPELFLRVGIKPPKGLLLYGPPGT 177 (388)
T ss_pred heEeeccCchhccccCCCCCceeEEeCCCCC
Confidence 1 1 1 24789999998
No 63
>KOG0926|consensus
Probab=32.08 E-value=84 Score=29.59 Aligned_cols=70 Identities=19% Similarity=0.334 Sum_probs=44.6
Q ss_pred HhhhcCCCCCeeEEEEEecCCCCCCcEEEEEECCeEEEEecCchHHHHHHHcCCCcCCcCeEEEcCCChhhhcCh
Q psy16255 21 REKSMKYVPGIVNLQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGL 95 (156)
Q Consensus 21 ~~~~~~~~~~~m~l~~LGtg~~~~~~s~~I~~~~~~iLiD~G~g~~~~l~~~~~~~~~i~~IfiTH~H~DHi~GL 95 (156)
|-++=...|..+++.++.|.-+. +|+-| ++-+|++|||---.|...+. -..++..--+||-+..|--+|=
T Consensus 619 Q~RVF~~~p~g~RLcVVaTNVAE--TSLTI--PgIkYVVD~Gr~K~R~Yd~~-TGV~~FeV~wiSkASadQRAGR 688 (1172)
T KOG0926|consen 619 QMRVFDEVPKGERLCVVATNVAE--TSLTI--PGIKYVVDCGRVKERLYDSK-TGVSSFEVDWISKASADQRAGR 688 (1172)
T ss_pred hhhhccCCCCCceEEEEeccchh--ccccc--CCeeEEEeccchhhhccccc-cCceeEEEEeeeccccchhccc
Confidence 33444456777889999987765 45544 68899999996544432221 1223445567888777766554
No 64
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=30.82 E-value=70 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=17.9
Q ss_pred CCcEEEEEECCeEEEEecCchH
Q psy16255 44 APKSLYLFTDQSRYLFNCGEGT 65 (156)
Q Consensus 44 ~~~s~~I~~~~~~iLiD~G~g~ 65 (156)
+.-.++|+.+++.||+|+|-|.
T Consensus 106 tH~~l~V~i~~~~yLvDVGFG~ 127 (281)
T PRK15047 106 THRLLLVELEGEKWIADVGFGG 127 (281)
T ss_pred CcEEEEEEECCeeEEEEecCCC
Confidence 3456777889999999999884
No 65
>COG0680 HyaD Ni,Fe-hydrogenase maturation factor [Energy production and conversion]
Probab=28.08 E-value=42 Score=24.62 Aligned_cols=26 Identities=8% Similarity=-0.115 Sum_probs=14.0
Q ss_pred CcCeEEEcCCChhhhcChHHHHHHHh
Q psy16255 78 KLDSVFITQPVWENLGGLLGLALTIQ 103 (156)
Q Consensus 78 ~i~~IfiTH~H~DHi~GL~~l~~~~~ 103 (156)
++..-+..+.-..|-.++..++....
T Consensus 81 ~i~~~~~~~~~s~H~~~~~~~L~~~~ 106 (160)
T COG0680 81 EIPAYSSASKDSAHELPLSELLALLK 106 (160)
T ss_pred hcccccccCCCccccCCHHHHHHHHH
Confidence 33333333334467777877765443
No 66
>KOG3048|consensus
Probab=27.56 E-value=39 Score=24.56 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=15.8
Q ss_pred cEEEEE---ECCeEEEEecCchHH
Q psy16255 46 KSLYLF---TDQSRYLFNCGEGTQ 66 (156)
Q Consensus 46 ~s~~I~---~~~~~iLiD~G~g~~ 66 (156)
+|++|. .+..++|||.|.|..
T Consensus 71 sSlYVPGkl~d~~k~lVDIGTGYy 94 (153)
T KOG3048|consen 71 SSLYVPGKLSDNSKFLVDIGTGYY 94 (153)
T ss_pred cceeccceeccccceeEeccCceE
Confidence 577775 356899999999853
No 67
>PRK14625 hypothetical protein; Provisional
Probab=26.44 E-value=1.8e+02 Score=19.99 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=18.0
Q ss_pred hhHHHHHhhhHHHHHHHHhhhcC
Q psy16255 4 NKVMQHAQNLKFQRVKMREKSMK 26 (156)
Q Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~ 26 (156)
++.|+.+|..|++=.+.|++-..
T Consensus 5 ~~mmkqaq~mQ~km~~~Q~el~~ 27 (109)
T PRK14625 5 GGLMKQAQAMQQKLADAQARLAE 27 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 57888999888888877776655
No 68
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=26.16 E-value=45 Score=25.95 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=15.0
Q ss_pred CCChhhhcChHHHHHHHhhCCCCceEEEc
Q psy16255 86 QPVWENLGGLLGLALTIQDVGVPEINLHG 114 (156)
Q Consensus 86 H~H~DHi~GL~~l~~~~~~~~~~~l~Iyg 114 (156)
|.|.||+.+|..+... .+.+++.|++
T Consensus 42 HSh~~Hl~al~~~a~~---~gv~~V~vH~ 67 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKK---QGVKKVYVHA 67 (223)
T ss_dssp S--HHHHHHHHHHHHH---TT-SEEEEEE
T ss_pred cccHHHHHHHHHHHHH---cCCCEEEEEE
Confidence 8999999988766543 2334555554
No 69
>PRK09604 UGMP family protein; Validated
Probab=25.32 E-value=1.7e+02 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.4
Q ss_pred HHHHHHcCCCcCCcCeEEEcCCC
Q psy16255 66 QRLAHEHKMKLAKLDSVFITQPV 88 (156)
Q Consensus 66 ~~~l~~~~~~~~~i~~IfiTH~H 88 (156)
...|.+.++++.+|++|.+|-.-
T Consensus 60 ~~~L~~~~~~~~did~iavt~GP 82 (332)
T PRK09604 60 EEALKEAGLTLEDIDAIAVTAGP 82 (332)
T ss_pred HHHHHHcCCCHHHCCEEEEecCC
Confidence 44566788999999999999754
No 70
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=23.54 E-value=1.3e+02 Score=21.62 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=20.3
Q ss_pred EEEecCchHH----HHHHHcCC--------------CcCCcCeEEEcCCCh
Q psy16255 57 YLFNCGEGTQ----RLAHEHKM--------------KLAKLDSVFITQPVW 89 (156)
Q Consensus 57 iLiD~G~g~~----~~l~~~~~--------------~~~~i~~IfiTH~H~ 89 (156)
++||.|.+.. +.+.+.|. .+.+.|+|+||=...
T Consensus 2 ~~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~dgvIl~Gg~~ 52 (181)
T cd01742 2 LILDFGSQYTHLIARRVRELGVYSEILPNTTPLEEIKLKNPKGIILSGGPS 52 (181)
T ss_pred EEEECCCchHHHHHHHHHhcCceEEEecCCCChhhhcccCCCEEEECCCcc
Confidence 5678886643 33444442 346788999997643
No 71
>KOG3414|consensus
Probab=23.46 E-value=1e+02 Score=22.03 Aligned_cols=20 Identities=20% Similarity=0.551 Sum_probs=17.2
Q ss_pred CcEEEEEECCeEEEEecCch
Q psy16255 45 PKSLYLFTDQSRYLFNCGEG 64 (156)
Q Consensus 45 ~~s~~I~~~~~~iLiD~G~g 64 (156)
++++...++++.+.||||.|
T Consensus 78 p~tvmfFfn~kHmkiD~gtg 97 (142)
T KOG3414|consen 78 PPTVMFFFNNKHMKIDLGTG 97 (142)
T ss_pred CceEEEEEcCceEEEeeCCC
Confidence 46777788899999999987
No 72
>PRK14011 prefoldin subunit alpha; Provisional
Probab=23.20 E-value=66 Score=23.23 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=18.0
Q ss_pred EEEEEecCCCCCCcEEEEEE---CCeEEEEecCchHH
Q psy16255 33 NLQVLGSGARGAPKSLYLFT---DQSRYLFNCGEGTQ 66 (156)
Q Consensus 33 ~l~~LGtg~~~~~~s~~I~~---~~~~iLiD~G~g~~ 66 (156)
-+..||+| ++|.. +...+|+|.|.|+.
T Consensus 52 iLVPLg~s-------~yV~g~i~d~dkVlVdIGtGy~ 81 (144)
T PRK14011 52 ILIPLGPG-------AFLKAKIVDPDKAILGVGSDIY 81 (144)
T ss_pred EEEEcCCC-------cEEeEEecCCCeEEEEccCCeE
Confidence 46666654 34532 45789999999863
No 73
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=23.10 E-value=3.3e+02 Score=22.47 Aligned_cols=14 Identities=7% Similarity=0.199 Sum_probs=10.6
Q ss_pred CcCeEEEcCCChhh
Q psy16255 78 KLDSVFITQPVWEN 91 (156)
Q Consensus 78 ~i~~IfiTH~H~DH 91 (156)
..+.+||+|.=.-=
T Consensus 97 ~~d~~~i~aglGGG 110 (349)
T cd02202 97 DADAILVIAGLGGG 110 (349)
T ss_pred cccEEEEecccCCC
Confidence 38999999975543
No 74
>PRK14624 hypothetical protein; Provisional
Probab=22.24 E-value=2.3e+02 Score=19.62 Aligned_cols=23 Identities=4% Similarity=0.219 Sum_probs=16.5
Q ss_pred hhHHHHHhhhHHHHHHHHhhhcC
Q psy16255 4 NKVMQHAQNLKFQRVKMREKSMK 26 (156)
Q Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~ 26 (156)
++.|+.+|..|++=.+.|++-..
T Consensus 9 ~~~mkqAq~mQ~km~~~QeeL~~ 31 (115)
T PRK14624 9 SEALSNMGNIREKMEEVKKRIAS 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788888888777777766544
No 75
>PRK01203 prefoldin subunit alpha; Provisional
Probab=21.71 E-value=68 Score=22.83 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=18.2
Q ss_pred EEEEEecCCCCCCcEEEEE---ECCeEEEEecCchHH
Q psy16255 33 NLQVLGSGARGAPKSLYLF---TDQSRYLFNCGEGTQ 66 (156)
Q Consensus 33 ~l~~LGtg~~~~~~s~~I~---~~~~~iLiD~G~g~~ 66 (156)
-+..||+| .+|. .+...+|+|.|.|+.
T Consensus 51 iLVPLg~s-------lYV~gki~d~~kVlVdIGTGy~ 80 (130)
T PRK01203 51 LLISIGSG-------IFADGNIKKDKDLIVPIGSGVY 80 (130)
T ss_pred EEEEccCC-------ceEeEEecCCCeEEEEcCCCeE
Confidence 46666653 4554 256789999999864
No 76
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.46 E-value=2.5e+02 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.1
Q ss_pred CCcEEEEEECCeEEEEecCch
Q psy16255 44 APKSLYLFTDQSRYLFNCGEG 64 (156)
Q Consensus 44 ~~~s~~I~~~~~~iLiD~G~g 64 (156)
+.-.+.|+.++..+|.|||-|
T Consensus 108 tH~~L~v~~~~~~~l~DvGFG 128 (275)
T COG2162 108 THRLLLVELEGETWLADVGFG 128 (275)
T ss_pred cceEEEEEecCceeEEecCCC
Confidence 445788889999999999988
No 77
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=20.70 E-value=1.3e+02 Score=20.85 Aligned_cols=19 Identities=16% Similarity=0.231 Sum_probs=16.5
Q ss_pred cEEEEEECCeEEEEecCch
Q psy16255 46 KSLYLFTDQSRYLFNCGEG 64 (156)
Q Consensus 46 ~s~~I~~~~~~iLiD~G~g 64 (156)
|++++..+++.+.+|+|.|
T Consensus 70 Ptfvffkngkh~~~d~gt~ 88 (114)
T cd02986 70 PSTIFFFNGQHMKVDYGSP 88 (114)
T ss_pred cEEEEEECCcEEEEecCCC
Confidence 6777777899999999987
Done!