RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16255
(156 letters)
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 62.6 bits (152), Expect = 2e-12
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 12/97 (12%)
Query: 33 NLQVLGSGA------RGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQ 86
++ LG+GA RGA ++ L + +LF+CGEGTQ + ++K ++ +FIT
Sbjct: 2 DVTFLGTGAAYPSPTRGAS-AVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITH 60
Query: 87 PVWENLGGLLGLALTIQDVGVP-----EINLHGPEGL 118
++ GL GL TI I ++GP GL
Sbjct: 61 LHGDHFFGLPGLLCTISLQSGSMVSKQPIEIYGPVGL 97
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 53.2 bits (128), Expect = 3e-09
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 33 NLQVLGSGA------RGAPKSLYLFTDQSR---YLFNCGEGTQRLAHEHKMKLAKLDSVF 83
L LG+GA R S+ L + R +LF+CGE TQ +K K++ +F
Sbjct: 2 ELLFLGTGAGIPAKARNVT-SVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRKIEKIF 60
Query: 84 ITQPVWENLGGLLGLALTIQDVGVPE-INLHGPEGL 118
IT +++ GL GL + G + + ++GP+G+
Sbjct: 61 ITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKGI 96
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 52.4 bits (126), Expect = 5e-09
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 33 NLQVLGSGA------RGAPKSLYLFTDQSR----YLFNCGEGTQRLAHEHKMKLAKLDSV 82
NL LG+ A R ++ L +LF+CGEGTQ KLD +
Sbjct: 3 NLIFLGTSAGVPTRTRNVT-AILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKI 61
Query: 83 FITQPVWENLGGLLGLALTIQDVGVPE-INLHGPEGL 118
FI+ ++L GL GL + G+ + + ++GP+G+
Sbjct: 62 FISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGI 98
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 49.6 bits (119), Expect = 5e-08
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 34 LQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQR-LAHEHKMKLAKLDSVFITQPVWENL 92
+ ++G + S +++ R LF+ GEG L K+ VF+T +
Sbjct: 1 MNIIGFS-KALF-STWIYYSPERILFDAGEGVSTTL----GSKVYAFKYVFLT-----HG 49
Query: 93 -----GGLLGLALTI--QDVGVPE-INLHGPEGL 118
GL G+ + +++ PEG
Sbjct: 50 HVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGN 83
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 44.6 bits (106), Expect = 2e-06
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 15/91 (16%)
Query: 1 MSGNKVMQHAQNLKFQRVKMREKSMKYVPGIVNLQVLGSGA------RGAPKSLYLFTDQ 54
M + +L + + + +MK + V+G D
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSNAMK-------MTVVGFWGGFPEAGEATS-GYLFEHDG 52
Query: 55 SRYLFNCGEGTQRLAHEHKMKLAKLDSVFIT 85
R L +CG G ++ + + +D+V ++
Sbjct: 53 FRLLVDCGSGVLAQLQKY-ITPSDIDAVVLS 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 2e-05
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 75/188 (39%)
Query: 7 MQHAQNLKFQRVKMR-EKSMKYVP-------GIVNLQVLGSGAR-----GAPKSLYLF-- 51
M NL ++V+ K+ ++P +VN GA+ G P+SLY
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN------GAKNLVVSGPPQSLYGLNL 391
Query: 52 ----------TDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVF--ITQPVWENLGGLLGLA 99
DQSR F ++R KL K + F + P + LL A
Sbjct: 392 TLRKAKAPSGLDQSRIPF-----SER-------KL-KFSNRFLPVASPFHSH---LLVPA 435
Query: 100 --LTIQDVGVPEINLHGPE----------GLVSENMGLASNSISPSDPALIQARTLMKIP 147
L +D+ ++ + + G ++ + S SIS ++
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDG---SDLRVLSGSISER---IVDCII----- 484
Query: 148 LRPRLPLD 155
RLP+
Sbjct: 485 ---RLPVK 489
Score = 28.9 bits (64), Expect = 0.81
Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 35/132 (26%)
Query: 45 PKSLYLFTDQSRYLF--NCGEGTQRLAHEHKMK-----LAK-LDSVFITQPVWENLGG-- 94
P + + Q + F E T+ A + + + K L +++ V + G
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG--YVSSLVEPSKVGQF 80
Query: 95 --LLGLALT-IQDVGVPEINLHGPEGLVSENMGLASNSISPSDPALI----------QAR 141
+L L LT ++ + ++H LA+ + +D L+ AR
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIH----------ALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 142 TLMKIPLRPRLP 153
+ K P +
Sbjct: 131 IMAKRPFDKKSN 142
Score = 25.8 bits (56), Expect = 8.6
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 19/67 (28%)
Query: 31 IVNL-----QVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFIT 85
IVN Q + +G A L T+ ++ K+ + +L
Sbjct: 1843 IVNYNVENQQYVAAGDLRA---LDTVTNVLNFI-----------KLQKIDIIELQKSLSL 1888
Query: 86 QPVWENL 92
+ V +L
Sbjct: 1889 EEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.054
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 13/31 (41%)
Query: 16 QRVKMREKSMK-YVPGIVNLQVLGSGARGAP 45
Q +K + S+K Y AP
Sbjct: 20 QALKKLQASLKLYADD------------SAP 38
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 30.8 bits (69), Expect = 0.16
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 47 SLYLFTDQSRYLFNCGEGTQRL--AHEHKMKLAKLDSVFITQPVWENLGGLLGL 98
SL L + + G+ + + + ++ V +T ++++GGL GL
Sbjct: 35 SLLLKKGNKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGL 88
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus}
SCOP: b.82.1.3
Length = 300
Score = 28.7 bits (64), Expect = 0.81
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 52 TDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFIT 85
T + EG L + L + S +
Sbjct: 245 TGGVMNILYAAEGYFILRGKETADLHRGYSCLVP 278
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A
{Escherichia coli} PDB: 3p2u_A
Length = 258
Score = 26.5 bits (59), Expect = 3.3
Identities = 4/39 (10%), Positives = 9/39 (23%), Gaps = 4/39 (10%)
Query: 47 SLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFIT 85
S + + + L + G +T
Sbjct: 41 SGVVKFNDAITLIDAGLHDLADRW----SPGSFQQFLLT 75
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 25.9 bits (56), Expect = 6.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 56 RYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLGGLLGL 98
LF+ G+ L + K+ + V I+ +++ GGLL L
Sbjct: 39 SVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYL 81
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C*
1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Length = 385
Score = 25.7 bits (57), Expect = 8.0
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 88 VWENLGGLLGLALTIQ 103
W N+G LLGL L IQ
Sbjct: 28 YWWNMGSLLGLCLVIQ 43
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 26.1 bits (57), Expect = 8.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 106 GVPEINLHGPEGLVSENMGLA--SNSISPSDP---ALIQART 142
G PE++LHG ++ G+ + SIS D A+ +RT
Sbjct: 1837 GAPEVHLHGAAAEAAKQAGVKTVNVSISHGDLQAVAVAVSRT 1878
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold,
reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter
pylori}
Length = 273
Score = 25.4 bits (54), Expect = 9.6
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 8 QHAQNLKFQRVKMREKSMKYVPGIVNLQVLGSGARGAPKSLYLFTD 53
A N Q +P +++ + A K LY+ +D
Sbjct: 111 VQALNATQQNSAKLNAIFNEIPADYAIELPSTNAANKDKILYIVSD 156
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD,
NADP, transferase, phosphoprotein, oxidoreductase, lipid
synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A*
2was_B
Length = 122
Score = 24.8 bits (55), Expect = 9.8
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 106 GVPEINLHGPEGLVSENMGLASNSISPSD 134
P + LHG +E G+ +S S
Sbjct: 80 NAPAVELHGNAKKAAEEAGVTDVKVSISH 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,201,693
Number of extensions: 118857
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 26
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)