RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16255
(156 letters)
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
coli [TaxId: 562]}
Length = 305
Score = 55.1 bits (131), Expect = 2e-10
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 33 NLQVLGSGA------RGAPKSLYL----FTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSV 82
NL LG+ A R ++ L T +LF+CGEGTQ KLD +
Sbjct: 2 NLIFLGTSAGVPTRTRNVT-AILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKI 60
Query: 83 FITQPVWENLGGLLGLALTIQDVGVP-EINLHGPEG 117
FI+ ++L GL GL + G+ + ++GP+G
Sbjct: 61 FISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 96
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 54.4 bits (129), Expect = 4e-10
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 34 LQVLGSGARGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPVWENLG 93
+ ++G + S +++ R LF+ GEG K+ VF+T +++
Sbjct: 1 MNIIGFS-KALF-STWIYYSPERILFDAGEGVSTTLGS---KVYAFKYVFLTHGHVDHIA 55
Query: 94 GLLGLALTIQDVGV---PEINLHGPEGL 118
GL G+ + +++ PEG
Sbjct: 56 GLWGVVNIRNNGMGDREKPLDVFYPEGN 83
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 54.3 bits (129), Expect = 5e-10
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 34 LQVLGSGA------RGAPKSL--YLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFIT 85
L LG+GA R L +S +LF+CGE TQ +K K++ +FIT
Sbjct: 3 LLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTTIKPRKIEKIFIT 62
Query: 86 QPVWENLGGLLGLALTIQDVGVPEINLH-GPEG 117
+++ GL GL + G + GP+G
Sbjct: 63 HMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKG 95
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 37.8 bits (86), Expect = 2e-04
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 34 LQVLGSGA-----RGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPV 88
+ V+G A D R L +CG G ++ + + +D+V ++
Sbjct: 3 MTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKY-ITPSDIDAVVLSHYH 61
Query: 89 WENLGGL 95
+++ +
Sbjct: 62 HDHVADI 68
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 33.6 bits (75), Expect = 0.006
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 32 VNLQVLGSGARGAPKSLYLF-TDQSRYLFNCG-----EGTQRLAHEHKMKLAKLDSVFIT 85
+ ++ LG + +S + + + +CG EG L + + A++D + I+
Sbjct: 4 LLIRPLG-AGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLIS 62
Query: 86 QPVWENLGGLLGL 98
++ G L
Sbjct: 63 HFHLDHCGALPWF 75
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 31.9 bits (71), Expect = 0.023
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 32 VNLQVLGSGARGAPKSLYLF-TDQSRYLFNCG----EGTQRLAHEHKMKLAKLDSVFITQ 86
+ + G AR S +L R L +CG + R ++D+V +T
Sbjct: 1 MRIVPFG-AAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTH 59
Query: 87 PVWENLGGLLGLA 99
+++G L L
Sbjct: 60 AHLDHVGRLPKLF 72
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f
complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 212
Score = 27.6 bits (61), Expect = 0.61
Identities = 5/39 (12%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 71 EHKMKLAKLDSVFITQPV------WENLGGLLGLALTIQ 103
E ++++ + ++ V + +GG+ +Q
Sbjct: 6 EERLEIQAIADDITSKYVPPHVNIFYCIGGITFTCFLVQ 44
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 261
Score = 27.0 bits (60), Expect = 0.91
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 74 MKLAKLDSVFITQPV------WENLGGLLGLALTIQ 103
+ L S I P W N+G LLGL L IQ
Sbjct: 10 LSLVN--SYIIDSPQPSSINYWWNMGSLLGLCLVIQ 43
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 448
Score = 26.6 bits (58), Expect = 1.5
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 42 RGAPKSLYLFTDQSRYLFNCGEGTQRLAHEHKMKL 76
RG P TD R+ NC G Q + +
Sbjct: 5 RGGPYKTEPATDLGRWRLNCERGRQTWTYLQDERA 39
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 246
Score = 26.2 bits (58), Expect = 1.6
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 89 WENLGGLLGLALTIQ 103
W N G LLG+ L +Q
Sbjct: 16 WWNFGSLLGICLILQ 30
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 25.9 bits (55), Expect = 2.5
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 47 SLYL-FTDQSRYLFNCGEGTQR-------LAHEHKMKLAKLDSVFITQPVWENLGGLLGL 98
S+ L L N + + ++ ++++ + ++ GLL L
Sbjct: 41 SIALSDDGVHWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSL 100
Query: 99 A 99
Sbjct: 101 R 101
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A
(TM0820) {Thermotoga maritima [TaxId: 2336]}
Length = 398
Score = 25.8 bits (55), Expect = 2.9
Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 96 LGLALTIQDVGVPEINLHGPEGLVSENMGLASNSISPSDPALIQARTLMK 145
+G ++++D G+PE ++ + +V M L ++ P +L + L +
Sbjct: 340 VGAPVSLKDAGIPEEDI---DKIVDNVMLLVEKNLKPKGASLGRIMVLER 386
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase
AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 299
Score = 25.4 bits (55), Expect = 3.1
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 52 TDQSRYLFNCGEGTQRLAHEHKMKLAKLDSVFI 84
T + EG L + L + S +
Sbjct: 244 TGGVMNILYAAEGYFILRGKETADLHRGYSCLV 276
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 23.9 bits (52), Expect = 4.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 25 MKYVPGIVNLQVLGSGARGAPK 46
MK V +V LQ+ A AP
Sbjct: 1 MKKVVAVVKLQLPAGKATPAPP 22
>d1j7xa_ c.14.1.2 (A:) Interphotoreceptor retinoid-binding protein
IRBP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 302
Score = 24.6 bits (53), Expect = 6.1
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 105 VGVPEINLHGPEGLVSENMGLASNSISPSDPALIQARTLMKIPLRPRL 152
V VP IN G G+ ++I +D AL +A+ ++ P L
Sbjct: 256 VTVPIINFIDSNGDYWLGGGVVPDAIVLADEALDKAKEIIA--FHPPL 301
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase
(KNTase), N-terminal domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 125
Score = 23.7 bits (51), Expect = 8.3
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 1 MSGNKVMQHAQNLKFQRVKMREKSMKYVPGIVNLQVLGSGARG 43
M+G +M + +K KY + + V GS R
Sbjct: 1 MNGPIIMTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQ 43
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated
serine/threonine-protein kinase 3, MAST3 (KIAA0561)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 23.1 bits (50), Expect = 9.6
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 55 SRYLFNCGEGTQRLAHEHKMKLAKLDSVFITQPV 88
SRY E +RL + + + FI Q V
Sbjct: 56 SRYFLEMQEKLERLLQDAHERSDSEEVSFIVQLV 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.393
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 513,509
Number of extensions: 21038
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 17
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)