BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16256
         (74 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3L1G|A Chain A, Human Alphab Crystallin
          Length = 96

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
          VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 34 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 93

Query: 71 PIA 73
          PI 
Sbjct: 94 PIT 96


>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
           In Alphab- Crystallin Oligomers
 pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
           In Alphab- Crystallin Oligomers
 pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
 pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
           Alphab-Crystallin Elucidated By A Triple Hybrid Approach
          Length = 175

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 12  VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLI 70
           VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+ I
Sbjct: 100 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTI 159

Query: 71  PIA 73
           PI 
Sbjct: 160 PIT 162


>pdb|2WJ7|A Chain A, Human Alphab Crystallin
 pdb|2WJ7|B Chain B, Human Alphab Crystallin
 pdb|2WJ7|C Chain C, Human Alphab Crystallin
 pdb|2WJ7|D Chain D, Human Alphab Crystallin
 pdb|2WJ7|E Chain E, Human Alphab Crystallin
          Length = 94

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++R++ +P   +P +I SSLS DGVLTV  P   +  PE+
Sbjct: 37 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 94


>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
          Length = 90

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++R++ +P   +P +I SS S DGVLTV  P   +  PE+
Sbjct: 33 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 90


>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
 pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
          Length = 94

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++R++ +P   +P +I SS S DGVLTV  P   +  PE+
Sbjct: 37 VHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 94


>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g
 pdb|2Y1Z|B Chain B, Human Alphab Crystallin Acd R120g
          Length = 94

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
          VH KHEE+ D    + RE++ ++ +P   +P +I SS+S DGVLTV  P   +  PE+
Sbjct: 37 VHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 94


>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
          Length = 101

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 58
          VHA+HEE+ D    + RE++R + LP G +P ++ S+LS +GVL+++A
Sbjct: 38 VHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 85


>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
          Length = 106

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 8   DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA--- 62
           DF  +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P +P+   
Sbjct: 35  DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVD 94

Query: 63  LGAPEKLIPIA 73
            G  E+ IP++
Sbjct: 95  AGHSERAIPVS 105


>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
          Length = 103

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 5/71 (7%)

Query: 8   DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA--- 62
           DF  +H KH E+ D    + RE++R + LP   +  ++  SLS DG+LT   P +P+   
Sbjct: 32  DFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVD 91

Query: 63  LGAPEKLIPIA 73
            G  E+ IP++
Sbjct: 92  AGHSERAIPVS 102


>pdb|3Q9P|A Chain A, Hspb1 Fragment
 pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
 pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
          Length = 85

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
          +  KH  + D    + R + R++ LP G +P  + SSLS +G LTVEAP+P
Sbjct: 34 ITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84


>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
 pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
          Length = 106

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 7   NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA--- 62
           +D+  +  KH E+ D    + RE++R + LP   +  +I  +LS DG+LT+  P  +   
Sbjct: 32  DDYVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITCTLSADGLLTLCGPKTSGID 91

Query: 63  LGAPEKLIPIA 73
            G  ++ IP+ 
Sbjct: 92  AGRGDRTIPVT 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.133    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,407,929
Number of Sequences: 62578
Number of extensions: 84095
Number of successful extensions: 179
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 18
length of query: 74
length of database: 14,973,337
effective HSP length: 44
effective length of query: 30
effective length of database: 12,219,905
effective search space: 366597150
effective search space used: 366597150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)