Query psy16256
Match_columns 74
No_of_seqs 128 out of 1035
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 16:46:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3591|consensus 99.9 6.1E-23 1.3E-27 135.2 9.3 74 1-74 88-163 (173)
2 cd06498 ACD_alphaB-crystallin_ 99.9 6.3E-21 1.4E-25 112.7 8.7 61 1-61 23-84 (84)
3 cd06497 ACD_alphaA-crystallin_ 99.9 6E-21 1.3E-25 113.2 8.6 60 1-60 26-86 (86)
4 cd06476 ACD_HspB2_like Alpha c 99.9 9.6E-21 2.1E-25 111.8 9.2 60 1-60 23-83 (83)
5 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 1.9E-20 4.2E-25 110.2 8.6 60 1-60 23-83 (83)
6 cd06480 ACD_HspB8_like Alpha-c 99.8 5.6E-20 1.2E-24 110.4 8.9 60 1-60 31-91 (91)
7 cd06477 ACD_HspB3_Like Alpha c 99.8 2.2E-19 4.8E-24 106.1 9.0 59 1-59 23-82 (83)
8 PRK10743 heat shock protein Ib 99.8 1.4E-18 2.9E-23 110.8 9.3 70 1-73 61-137 (137)
9 cd06481 ACD_HspB9_like Alpha c 99.8 1.9E-18 4.2E-23 102.5 8.7 60 1-60 23-87 (87)
10 PRK11597 heat shock chaperone 99.8 4.6E-18 1E-22 109.1 10.2 71 1-74 59-136 (142)
11 PF00011 HSP20: Hsp20/alpha cr 99.8 8.9E-18 1.9E-22 100.5 10.5 72 1-73 23-102 (102)
12 cd06479 ACD_HspB7_like Alpha c 99.8 3E-18 6.6E-23 100.8 8.3 58 1-60 24-81 (81)
13 cd06526 metazoan_ACD Alpha-cry 99.8 5.5E-18 1.2E-22 99.2 9.0 60 1-60 23-83 (83)
14 cd06475 ACD_HspB1_like Alpha c 99.8 3.9E-18 8.4E-23 101.1 7.9 59 2-60 27-86 (86)
15 cd06482 ACD_HspB10 Alpha cryst 99.7 2.4E-17 5.3E-22 98.2 8.8 60 1-60 24-87 (87)
16 COG0071 IbpA Molecular chapero 99.7 3E-17 6.4E-22 104.8 9.7 71 2-73 67-146 (146)
17 cd06472 ACD_ScHsp26_like Alpha 99.7 5.6E-16 1.2E-20 92.0 7.1 58 2-60 26-92 (92)
18 cd06471 ACD_LpsHSP_like Group 99.6 4.3E-15 9.3E-20 88.1 7.2 58 1-60 26-93 (93)
19 cd06464 ACD_sHsps-like Alpha-c 99.6 5.6E-15 1.2E-19 85.1 7.1 59 1-60 23-88 (88)
20 cd06470 ACD_IbpA-B_like Alpha- 99.6 2.4E-14 5.1E-19 85.0 8.4 57 1-60 27-90 (90)
21 KOG0710|consensus 99.3 5.5E-12 1.2E-16 84.3 4.1 70 3-73 112-195 (196)
22 cd00298 ACD_sHsps_p23-like Thi 99.2 7.3E-11 1.6E-15 65.3 7.7 58 2-60 23-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 98.6 2.5E-07 5.4E-12 52.6 6.4 35 28-63 37-71 (78)
24 cd06463 p23_like Proteins cont 98.1 1.2E-05 2.5E-10 45.2 5.7 54 2-63 23-76 (84)
25 cd06466 p23_CS_SGT1_like p23_l 97.2 0.002 4.4E-08 36.6 6.2 35 28-63 43-77 (84)
26 PF05455 GvpH: GvpH; InterPro 96.6 0.011 2.3E-07 39.5 6.4 34 28-63 137-170 (177)
27 PF08190 PIH1: pre-RNA process 96.3 0.017 3.7E-07 40.3 6.3 31 29-59 296-327 (328)
28 PF04969 CS: CS domain; Inter 95.6 0.17 3.6E-06 27.7 7.7 50 3-60 30-79 (79)
29 cd06465 p23_hB-ind1_like p23_l 93.0 0.9 1.9E-05 27.1 6.6 54 2-62 25-78 (108)
30 cd06482 ACD_HspB10 Alpha cryst 90.4 0.58 1.3E-05 27.6 3.7 33 28-62 9-41 (87)
31 cd06478 ACD_HspB4-5-6 Alpha-cr 90.2 0.76 1.7E-05 26.5 4.1 32 28-61 8-39 (83)
32 cd06489 p23_CS_hSgt1_like p23_ 88.4 3.1 6.7E-05 23.5 6.8 54 2-63 24-77 (84)
33 PRK10743 heat shock protein Ib 88.3 1.6 3.4E-05 27.7 4.8 33 28-62 46-78 (137)
34 cd06479 ACD_HspB7_like Alpha c 88.0 1.1 2.4E-05 26.0 3.6 33 28-62 9-41 (81)
35 cd06471 ACD_LpsHSP_like Group 87.6 1.2 2.6E-05 25.7 3.7 33 28-62 11-43 (93)
36 cd06470 ACD_IbpA-B_like Alpha- 87.6 1.3 2.9E-05 25.7 3.9 34 28-63 12-45 (90)
37 cd06526 metazoan_ACD Alpha-cry 87.4 1.3 2.7E-05 25.2 3.7 35 27-63 7-41 (83)
38 cd06467 p23_NUDC_like p23_like 87.2 2.4 5.2E-05 23.8 4.7 29 34-63 48-77 (85)
39 PRK11597 heat shock chaperone 85.3 2.7 5.9E-05 26.9 4.7 33 28-62 44-76 (142)
40 PF00011 HSP20: Hsp20/alpha cr 85.0 2.3 4.9E-05 24.7 4.0 32 28-61 8-39 (102)
41 cd06488 p23_melusin_like p23_l 82.3 7.3 0.00016 22.3 6.0 35 28-63 46-80 (87)
42 cd06476 ACD_HspB2_like Alpha c 81.4 3.2 6.9E-05 24.0 3.5 33 28-62 8-40 (83)
43 cd06467 p23_NUDC_like p23_like 81.3 3.4 7.5E-05 23.1 3.6 31 28-59 9-39 (85)
44 cd06477 ACD_HspB3_Like Alpha c 80.3 3.6 7.7E-05 23.9 3.5 33 28-62 8-40 (83)
45 PF13349 DUF4097: Domain of un 80.2 11 0.00023 23.4 6.0 56 2-58 88-148 (166)
46 cd06497 ACD_alphaA-crystallin_ 78.9 5 0.00011 23.2 3.9 33 28-62 11-43 (86)
47 cd06494 p23_NUDCD2_like p23-li 75.7 5.6 0.00012 23.5 3.5 29 29-58 17-45 (93)
48 cd06468 p23_CacyBP p23_like do 74.6 13 0.00029 21.0 6.3 29 34-63 57-85 (92)
49 cd06472 ACD_ScHsp26_like Alpha 73.5 12 0.00026 21.5 4.5 34 28-62 10-43 (92)
50 cd06498 ACD_alphaB-crystallin_ 72.8 8.1 0.00018 22.2 3.6 32 28-61 8-39 (84)
51 cd06475 ACD_HspB1_like Alpha c 72.7 8.9 0.00019 22.1 3.8 33 28-62 11-43 (86)
52 cd06481 ACD_HspB9_like Alpha c 72.5 9.2 0.0002 22.1 3.8 33 28-62 8-40 (87)
53 cd06493 p23_NUDCD1_like p23_NU 70.4 11 0.00023 21.4 3.8 27 35-62 49-76 (85)
54 cd01724 Sm_D1 The eukaryotic S 65.3 11 0.00023 22.3 3.1 23 24-46 58-80 (90)
55 cd00503 Frataxin Frataxin is a 65.0 8.2 0.00018 23.4 2.6 18 41-59 27-44 (105)
56 KOG3413|consensus 64.9 3.6 7.7E-05 27.0 1.0 24 35-59 65-88 (156)
57 PRK02913 hypothetical protein; 61.5 6.5 0.00014 25.7 1.8 15 46-60 112-126 (150)
58 TIGR03421 FeS_CyaY iron donor 59.9 11 0.00024 22.7 2.6 17 43-60 26-42 (102)
59 PRK00446 cyaY frataxin-like pr 57.0 14 0.0003 22.5 2.6 17 43-60 28-44 (105)
60 COG4811 Predicted membrane pro 56.7 7.8 0.00017 25.1 1.5 15 46-60 114-128 (152)
61 PF01491 Frataxin_Cyay: Fratax 56.4 12 0.00026 22.7 2.3 18 42-60 30-47 (109)
62 cd06492 p23_mNUDC_like p23-lik 54.9 25 0.00055 20.3 3.4 26 32-58 13-40 (87)
63 COG0071 IbpA Molecular chapero 54.6 33 0.00071 21.4 4.2 33 28-62 51-83 (146)
64 cd02175 GH16_lichenase lichena 54.4 56 0.0012 21.5 5.4 44 3-48 34-88 (212)
65 PF06173 DUF986: Protein of un 53.6 10 0.00022 24.7 1.7 12 47-58 112-123 (149)
66 TIGR03422 mito_frataxin fratax 53.2 13 0.00027 22.4 2.0 15 45-60 30-44 (97)
67 cd02178 GH16_beta_agarase Beta 52.9 66 0.0014 21.9 5.7 35 3-37 60-109 (258)
68 PF01954 DUF104: Protein of un 49.1 14 0.00031 20.3 1.6 19 42-61 3-21 (60)
69 PF09585 Lin0512_fam: Conserve 48.7 3.2 6.9E-05 25.9 -1.2 31 29-60 53-83 (113)
70 PF07076 DUF1344: Protein of u 47.0 11 0.00023 21.1 0.9 18 31-48 25-42 (61)
71 cd08023 GH16_laminarinase_like 43.0 87 0.0019 20.7 5.0 16 3-18 40-55 (235)
72 cd06490 p23_NCB5OR p23_like do 42.9 64 0.0014 18.4 5.1 35 28-63 45-80 (87)
73 PF14014 DUF4230: Protein of u 41.9 16 0.00035 22.7 1.3 35 29-63 42-80 (157)
74 cd06495 p23_NUDCD3_like p23-li 41.8 51 0.0011 19.8 3.4 31 28-59 15-46 (102)
75 PF04972 BON: BON domain; Int 40.6 41 0.00089 17.6 2.6 15 2-16 20-34 (64)
76 PTZ00186 heat shock 70 kDa pre 37.6 60 0.0013 25.6 4.0 35 37-72 487-521 (657)
77 PRK00296 minE cell division to 37.5 62 0.0013 19.0 3.2 25 38-62 55-82 (86)
78 PF03153 TFIIA: Transcription 37.3 17 0.00037 26.1 1.0 16 41-57 345-360 (375)
79 COG1965 CyaY Protein implicate 35.1 44 0.00095 20.6 2.4 17 44-61 30-46 (106)
80 COG2063 FlgH Flagellar basal b 34.1 1.4E+02 0.003 20.8 5.0 38 5-43 157-194 (230)
81 PLN02982 galactinol-raffinose 33.4 58 0.0013 26.8 3.4 35 38-72 829-863 (865)
82 COG0097 RplF Ribosomal protein 32.0 50 0.0011 22.1 2.4 30 31-62 3-32 (178)
83 PF10882 bPH_5: Bacterial PH d 31.5 68 0.0015 18.3 2.8 16 1-16 1-16 (100)
84 PRK01379 cyaY frataxin-like pr 31.1 52 0.0011 20.0 2.3 16 43-59 29-44 (103)
85 PF13600 DUF4140: N-terminal d 30.9 65 0.0014 18.7 2.6 18 34-52 30-47 (104)
86 PRK12700 flgH flagellar basal 29.7 1.6E+02 0.0035 20.3 4.7 37 6-43 155-191 (230)
87 PRK13410 molecular chaperone D 28.3 82 0.0018 24.8 3.4 30 42-72 467-496 (668)
88 TIGR03654 L6_bact ribosomal pr 28.2 66 0.0014 21.0 2.5 27 30-62 5-31 (175)
89 PRK13988 cell division topolog 28.0 76 0.0017 19.1 2.6 26 38-63 57-85 (97)
90 TIGR02934 nifT_nitrog probable 27.2 73 0.0016 18.1 2.2 15 49-63 8-22 (67)
91 PF05258 DUF721: Protein of un 27.0 44 0.00096 18.3 1.4 15 45-60 43-57 (89)
92 PF08479 POTRA_2: POTRA domain 26.8 72 0.0016 17.4 2.2 11 47-58 63-73 (76)
93 TIGR01991 HscA Fe-S protein as 26.6 1.3E+02 0.0027 23.3 4.1 34 38-72 449-482 (599)
94 PRK12701 flgH flagellar basal 26.5 1.8E+02 0.0039 20.1 4.5 35 5-43 153-190 (230)
95 PRK12407 flgH flagellar basal 25.7 2.2E+02 0.0047 19.6 4.8 35 5-43 144-181 (221)
96 PLN03088 SGT1, suppressor of 25.6 2.5E+02 0.0055 20.0 6.1 34 29-63 203-236 (356)
97 PRK12696 flgH flagellar basal 25.6 2.1E+02 0.0047 19.8 4.8 34 6-43 161-197 (236)
98 PF02200 STE: STE like transcr 25.4 1.2E+02 0.0027 18.6 3.1 27 29-59 3-29 (110)
99 PRK05498 rplF 50S ribosomal pr 25.3 79 0.0017 20.7 2.5 27 29-61 5-31 (178)
100 cd05794 S1_EF-P_repeat_2 S1_EF 25.3 51 0.0011 17.9 1.3 16 45-62 23-38 (56)
101 PRK12697 flgH flagellar basal 25.1 2E+02 0.0043 19.9 4.5 35 5-43 150-187 (226)
102 PLN02355 probable galactinol-- 24.6 1E+02 0.0022 25.2 3.3 35 38-72 721-756 (758)
103 PRK13989 cell division topolog 24.5 1.3E+02 0.0027 17.6 3.0 24 38-61 56-82 (84)
104 PRK12788 flgH flagellar basal 24.2 2E+02 0.0042 20.0 4.4 35 5-43 158-195 (234)
105 cd02180 GH16_fungal_KRE6_gluca 24.1 2.7E+02 0.0059 19.8 5.9 16 3-18 43-58 (295)
106 PRK01433 hscA chaperone protei 23.9 1.5E+02 0.0032 23.0 4.1 29 43-72 448-476 (595)
107 KOG2853|consensus 23.7 23 0.0005 26.8 -0.3 19 26-44 134-152 (509)
108 PF10517 DM13: Electron transf 23.6 39 0.00084 20.1 0.7 19 28-46 70-90 (108)
109 TIGR02058 lin0512_fam conserve 23.5 16 0.00035 22.8 -1.0 27 33-60 58-85 (116)
110 PF12431 CitT: Transcriptional 23.3 42 0.00092 15.8 0.7 8 34-41 22-29 (30)
111 PF14913 DPCD: DPCD protein fa 23.0 1.5E+02 0.0031 20.3 3.4 34 28-62 131-170 (194)
112 PHA02745 hypothetical protein; 22.8 74 0.0016 22.5 2.1 21 28-48 121-141 (265)
113 PF02837 Glyco_hydro_2_N: Glyc 22.8 60 0.0013 20.0 1.5 19 27-45 70-88 (167)
114 KOG0100|consensus 22.7 1.6E+02 0.0035 23.0 3.9 38 34-72 496-533 (663)
115 PF10365 DUF2436: Domain of un 22.6 1.1E+02 0.0024 20.1 2.7 29 32-60 78-106 (161)
116 PRK00249 flgH flagellar basal 22.5 2.4E+02 0.0052 19.3 4.5 16 6-21 147-162 (222)
117 PF07048 DUF1331: Protein of u 22.4 43 0.00092 16.3 0.6 12 50-61 5-16 (35)
118 PF06988 NifT: NifT/FixU prote 22.1 70 0.0015 18.0 1.5 16 48-63 7-22 (64)
119 PF07196 Flagellin_IN: Flagell 21.7 1.2E+02 0.0026 15.7 2.4 17 42-58 37-54 (56)
120 PLN02711 Probable galactinol-- 21.4 1.3E+02 0.0028 24.6 3.4 33 38-72 743-775 (777)
121 PLN02219 probable galactinol-- 21.3 1.2E+02 0.0026 24.8 3.2 36 38-73 738-774 (775)
122 PLN02684 Probable galactinol-- 21.1 1.2E+02 0.0027 24.7 3.2 35 38-72 712-748 (750)
123 PF10341 TPP1: Shelterin compl 21.1 1.9E+02 0.0041 16.9 3.7 33 26-59 25-57 (106)
124 PF06029 AlkA_N: AlkA N-termin 21.1 1.4E+02 0.003 18.2 2.9 32 27-60 33-65 (116)
125 PTZ00179 60S ribosomal protein 21.1 1.1E+02 0.0023 20.5 2.5 26 31-62 7-32 (189)
126 PF03853 YjeF_N: YjeF-related 20.8 32 0.00069 22.0 -0.1 35 27-61 131-168 (169)
127 PF08001 CMV_US: CMV US; Inte 20.8 97 0.0021 21.5 2.3 30 29-59 47-81 (231)
128 PRK11198 LysM domain/BON super 20.7 1.4E+02 0.0031 18.8 2.9 16 2-17 46-61 (147)
129 PF14864 Alkyl_sulf_C: Alkyl s 20.4 1.5E+02 0.0032 17.9 2.9 30 28-60 33-62 (125)
130 PRK05183 hscA chaperone protei 20.2 1.8E+02 0.004 22.5 3.9 21 40-60 467-487 (616)
No 1
>KOG3591|consensus
Probab=99.89 E-value=6.1e-23 Score=135.18 Aligned_cols=74 Identities=42% Similarity=0.659 Sum_probs=67.2
Q ss_pred CeEEEECCEEEEEEEEEeecCC-CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCC-CCeEEeccC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGA-PEKLIPIAH 74 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~~-~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~-~~r~I~I~~ 74 (74)
+.|++.|+.|.|+|+|+++.++ ||+.|+|.|+|.||++||+++|+|+|+.||+|+|++||..... .+|.|||++
T Consensus 88 l~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 88 LKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQ 163 (173)
T ss_pred eEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCCCcCccceEEeEee
Confidence 3589999999999999988655 7999999999999999999999999999999999999998643 589999975
No 2
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.85 E-value=6.3e-21 Score=112.69 Aligned_cols=61 Identities=41% Similarity=0.636 Sum_probs=53.8
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~ 61 (74)
+.|++.+|.|+|+|+++.+.+ .+|.+++|+|+|.||.+||.++|+|+|++||+|+|++||+
T Consensus 23 i~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 23 LKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred eEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 368999999999999865443 3688999999999999999999999995599999999985
No 3
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.85 E-value=6e-21 Score=113.15 Aligned_cols=60 Identities=33% Similarity=0.605 Sum_probs=53.5
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++.+|.|+|+|++++..+ .+|..++|+|+|.||++||+++|+|+|++||+|+|++||
T Consensus 26 i~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 26 LTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK 86 (86)
T ss_pred eEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence 368999999999999865443 368889999999999999999999999779999999997
No 4
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.85 E-value=9.6e-21 Score=111.82 Aligned_cols=60 Identities=32% Similarity=0.602 Sum_probs=53.5
Q ss_pred CeEEEECCEEEEEEEEEeecCC-CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~~-~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++++|.|+|+|+++...++ ++.+++|+|+|.||++||+++|+|+|++||+|+|++||
T Consensus 23 i~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 23 ITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred eEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 4689999999999998654443 68899999999999999999999999559999999997
No 5
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.84 E-value=1.9e-20 Score=110.20 Aligned_cols=60 Identities=43% Similarity=0.725 Sum_probs=53.3
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++++|.|+|+|+++...+ .+|..++|.|+|.||.+||.++|+|+|++||+|+|++||
T Consensus 23 I~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 23 LSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred eEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 368999999999999865433 468889999999999999999999999669999999997
No 6
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.83 E-value=5.6e-20 Score=110.44 Aligned_cols=60 Identities=30% Similarity=0.545 Sum_probs=54.4
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++.+|.|+|+|+|+++.+ .++.+|+|+|+|.||++||.+.|+|.|++||+|+|++|.
T Consensus 31 L~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 31 LTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred cEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcCC
Confidence 468999999999999987644 368999999999999999999999999889999999983
No 7
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.81 E-value=2.2e-19 Score=106.14 Aligned_cols=59 Identities=20% Similarity=0.504 Sum_probs=52.6
Q ss_pred CeEEEECCEEEEEEEEEeec-CCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256 1 MLFGSPNDFPIVHAKHEEKS-DSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~-~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~P 59 (74)
+.|++++|.|+|+|++..+. +.++.+|+|+|+|.||++||.++|+|+|++||+|+|++|
T Consensus 23 I~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 23 IIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred eEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 46899999999999986543 346888999999999999999999999868999999987
No 8
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.78 E-value=1.4e-18 Score=110.85 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=57.0
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC-CCCCeEEecc
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL-GAPEKLIPIA 73 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~-~~~~r~I~I~ 73 (74)
+.|++++|.|+|+|++....+ .+|. +++|+|+|.||++||.+ +|+| +||||+|++||..+ ..++|+|+|+
T Consensus 61 i~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~-~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 61 LEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL-VNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred eEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE-eCCEEEEEEeCCCccccCCeEEeeC
Confidence 368999999999999764333 2342 35899999999999999 5999 89999999999743 3578999985
No 9
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.78 E-value=1.9e-18 Score=102.54 Aligned_cols=60 Identities=32% Similarity=0.489 Sum_probs=51.5
Q ss_pred CeEEEECCEEEEEEEEEeecC---CCe--EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD---SKS--VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~---~~~--~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++++|.|+|+|+++...+ ..| .+++|+|+|.||++||.++|+|.|++||+|+|++|+
T Consensus 23 I~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P~ 87 (87)
T cd06481 23 LSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAPR 87 (87)
T ss_pred eEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEcCC
Confidence 368999999999999865432 233 467999999999999999999999889999999996
No 10
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.77 E-value=4.6e-18 Score=109.07 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=57.3
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC-CCCCeEEecc
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL-GAPEKLIPIA 73 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~-~~~~r~I~I~ 73 (74)
+.|++++|.|+|+|++....+ .+|. +++|+|+|.||++||.+ +|+| +||||+|++||..+ ..++|+|+|+
T Consensus 59 i~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 59 LDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred eEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEeccCccccCCcEEEEC
Confidence 358899999999998754322 2342 35899999999999998 7999 89999999999743 3578999997
Q ss_pred C
Q psy16256 74 H 74 (74)
Q Consensus 74 ~ 74 (74)
.
T Consensus 136 ~ 136 (142)
T PRK11597 136 E 136 (142)
T ss_pred C
Confidence 4
No 11
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.77 E-value=8.9e-18 Score=100.50 Aligned_cols=72 Identities=28% Similarity=0.517 Sum_probs=56.3
Q ss_pred CeEEEECCEEEEEEEEE-eecCCCeE-----EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC--CCCeEEec
Q psy16256 1 MLFGSPNDFPIVHAKHE-EKSDSKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG--APEKLIPI 72 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~-~~~~~~~~-----~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~--~~~r~I~I 72 (74)
+.|+++++.|+|+|++. ...+..+. ++.|.|+|.||+++|.++|+|.| +||+|+|++||.... ..+|.|+|
T Consensus 23 i~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 23 IKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp EEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEEEEEEEBSSSCTTSSSCEE-E
T ss_pred EEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEEEEEEEccccccCCCCeEEEe
Confidence 36899999999999988 22233332 36899999999999999999999 899999999999864 26899998
Q ss_pred c
Q psy16256 73 A 73 (74)
Q Consensus 73 ~ 73 (74)
+
T Consensus 102 ~ 102 (102)
T PF00011_consen 102 K 102 (102)
T ss_dssp T
T ss_pred C
Confidence 5
No 12
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.77 E-value=3e-18 Score=100.85 Aligned_cols=58 Identities=29% Similarity=0.483 Sum_probs=51.0
Q ss_pred CeEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++++|.|+|+|+++.. .+..+++|+|+|.||++||+++|+|+|++||+|+|++|+
T Consensus 24 i~V~v~~~~L~I~ger~~~--~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 24 IIVTTSNNQIEVHAEKLAS--DGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred eEEEEECCEEEEEEEEecc--CCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 3689999999999987532 245689999999999999999999998789999999985
No 13
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.77 E-value=5.5e-18 Score=99.16 Aligned_cols=60 Identities=45% Similarity=0.744 Sum_probs=52.8
Q ss_pred CeEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|+++++.|+|+|+++...+ .++.+++|.|+|.||++||.++++|+|++||+|+|++||
T Consensus 23 I~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 23 LKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred cEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 468999999999999876544 358889999999999999999999999544999999997
No 14
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.76 E-value=3.9e-18 Score=101.06 Aligned_cols=59 Identities=42% Similarity=0.701 Sum_probs=51.8
Q ss_pred eEEEECCEEEEEEEEEeecC-CCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 2 LFGSPNDFPIVHAKHEEKSD-SKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~~~-~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
.|++++|.|+|+|+++...+ .++..++|+|+|.||++||+++|+|.|.+||+|+|++|.
T Consensus 27 ~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP~ 86 (86)
T cd06475 27 VVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI 86 (86)
T ss_pred EEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEecC
Confidence 58999999999999865433 357889999999999999999999999449999999994
No 15
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.74 E-value=2.4e-17 Score=98.20 Aligned_cols=60 Identities=25% Similarity=0.379 Sum_probs=51.4
Q ss_pred CeEEEECCEEEEEEEEEeecC--C--CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD--S--KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~--~--~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++.+|.|+|+|+++...+ . .+.+++|.|+|.||++||.++|+|+|.++|+|+|+.|.
T Consensus 24 I~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~~~ 87 (87)
T cd06482 24 VKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETPC 87 (87)
T ss_pred eEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEeeCC
Confidence 468999999999999865332 2 26788999999999999999999999777799999984
No 16
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3e-17 Score=104.79 Aligned_cols=71 Identities=30% Similarity=0.462 Sum_probs=59.6
Q ss_pred eEEEECCEEEEEEEEEeec--C-CCe-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCCC-CCCeEEec
Q psy16256 2 LFGSPNDFPIVHAKHEEKS--D-SKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPI 72 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~~--~-~~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~-~~~r~I~I 72 (74)
.|++++|.|+|+|++.... + .++ .+++|.|+|.||..||++.++|+| +||+|+|++||..++ ..++.|+|
T Consensus 67 ~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~nGvL~I~lpk~~~~~~~~~~i~I 145 (146)
T COG0071 67 EITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLPKAEPEEKKPKRIEI 145 (146)
T ss_pred EEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe-eCcEEEEEEeccccccccCceeec
Confidence 5899999999999986522 2 233 457999999999999999999999 899999999999864 36788887
Q ss_pred c
Q psy16256 73 A 73 (74)
Q Consensus 73 ~ 73 (74)
+
T Consensus 146 ~ 146 (146)
T COG0071 146 E 146 (146)
T ss_pred C
Confidence 4
No 17
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.65 E-value=5.6e-16 Score=92.03 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=47.4
Q ss_pred eEEEECC-EEEEEEEEEeec--C-CCe-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 2 LFGSPND-FPIVHAKHEEKS--D-SKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 2 ~~~v~~~-~L~I~g~~~~~~--~-~~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
.|++++| .|+|+|++.... + ..+ .+++|.|+|.||.+||.+.|+|+| +||+|+|++||
T Consensus 26 ~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~-~nGvL~I~lPK 92 (92)
T cd06472 26 KVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL-ENGVLTVTVPK 92 (92)
T ss_pred EEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE-ECCEEEEEecC
Confidence 5778765 899999875322 1 223 245899999999999999999999 89999999997
No 18
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.60 E-value=4.3e-15 Score=88.07 Aligned_cols=58 Identities=28% Similarity=0.566 Sum_probs=47.9
Q ss_pred CeEEEECCEEEEEEEEEeec---CC--Ce-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKS---DS--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~---~~--~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++++|.|+|+|++.... +. .+ .++.|.|+|.|| ++|.+.++|+| +||+|+|++||
T Consensus 26 i~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~-~dGvL~I~lPK 93 (93)
T cd06471 26 IKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKY-ENGVLKITLPK 93 (93)
T ss_pred eEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEE-ECCEEEEEEcC
Confidence 36889999999999986422 11 23 235799999998 79999999999 89999999997
No 19
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.60 E-value=5.6e-15 Score=85.13 Aligned_cols=59 Identities=29% Similarity=0.590 Sum_probs=50.6
Q ss_pred CeEEEECCEEEEEEEEEeecCC-------CeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSDS-------KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~~-------~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|++.++.|.|+|++...... ++.++.|.|+|.||.++|.+.++|.| .||+|+|++||
T Consensus 23 i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~G~L~I~~pk 88 (88)
T cd06464 23 IKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTITLPK 88 (88)
T ss_pred eEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eCCEEEEEEcC
Confidence 3689999999999998754322 13467999999999999999999999 78999999997
No 20
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.57 E-value=2.4e-14 Score=85.02 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=47.3
Q ss_pred CeEEEECCEEEEEEEEEeecC--CCe-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 1 MLFGSPNDFPIVHAKHEEKSD--SKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~~~~~~--~~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
+.|+++++.|+|+|++..... .+| .+++|.|+|.||.++|.+ +|+| +||+|+|++|+
T Consensus 27 i~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~GvL~I~l~~ 90 (90)
T cd06470 27 LEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGLLTIDLER 90 (90)
T ss_pred eEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCEEEEEEEC
Confidence 368899999999999865442 233 346899999999999985 9999 89999999985
No 21
>KOG0710|consensus
Probab=99.26 E-value=5.5e-12 Score=84.30 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=55.4
Q ss_pred EEEECC-EEEEEEEEEeecC---C--Ce-----EEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC---CCCCe
Q psy16256 3 FGSPND-FPIVHAKHEEKSD---S--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL---GAPEK 68 (74)
Q Consensus 3 ~~v~~~-~L~I~g~~~~~~~---~--~~-----~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~---~~~~r 68 (74)
+.++++ .|+|+|++....+ . .+ .++.|.|.|.||++++.+.|+|.| +||||+|.+||..+ ....+
T Consensus 112 v~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~-~nGVL~VvvpK~~~~~~~~~v~ 190 (196)
T KOG0710|consen 112 VEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEM-ENGVLTVVVPKLEPLLKKPKVR 190 (196)
T ss_pred EEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHh-hCCeEEEEEecccccccCCccc
Confidence 567777 7999999864432 1 12 245899999999999999999999 89999999999986 23567
Q ss_pred EEecc
Q psy16256 69 LIPIA 73 (74)
Q Consensus 69 ~I~I~ 73 (74)
.|.|+
T Consensus 191 ~i~i~ 195 (196)
T KOG0710|consen 191 QIAIS 195 (196)
T ss_pred eeecc
Confidence 77764
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.25 E-value=7.3e-11 Score=65.28 Aligned_cols=58 Identities=31% Similarity=0.580 Sum_probs=50.5
Q ss_pred eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
.|.+.++.|.|+|++..........+.|.+.+.||..+|++.++|.+ .+|+|+|++||
T Consensus 23 ~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l~K 80 (80)
T cd00298 23 KVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLPK 80 (80)
T ss_pred EEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEEcC
Confidence 57899999999998765433345678999999999999999999999 78999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.61 E-value=2.5e-07 Score=52.58 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=32.8
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|.+.+.||..||+++.+|++ .+|.|.|++||.+.
T Consensus 37 ~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~K~~~ 71 (78)
T cd06469 37 PYLFELDLAAPIDDEKSSAKI-GNGVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEeCcccccccccEEEE-eCCEEEEEEEeCCC
Confidence 589999999999999999999 79999999999864
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.13 E-value=1.2e-05 Score=45.19 Aligned_cols=54 Identities=19% Similarity=0.047 Sum_probs=42.2
Q ss_pred eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|.+.++.|.|++... + ...|...+.|+..||++..++++ .+|.|.|.++|..+
T Consensus 23 ~v~~~~~~l~i~~~~~---~----~~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~ 76 (84)
T cd06463 23 KVEFTPKSLTVSVKGG---G----GKEYLLEGELFGPIDPEESKWTV-EDRKIEITLKKKEP 76 (84)
T ss_pred EEEEecCEEEEEeeCC---C----CCceEEeeEccCccchhhcEEEE-eCCEEEEEEEECCC
Confidence 4566666777776532 0 13467888999999999999999 79999999999875
No 25
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.24 E-value=0.002 Score=36.57 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=31.8
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|.-.+.|+..|+++..++.+ .+|.|.|.++|...
T Consensus 43 ~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~ 77 (84)
T cd06466 43 EYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP 77 (84)
T ss_pred eEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence 577788999999999999999 79999999999874
No 26
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=96.64 E-value=0.011 Score=39.51 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=30.2
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|.+.+.||.. +.+..+++| +||||+|++-+...
T Consensus 137 ~~~krv~L~~~-~~e~~~~t~-nNgILEIri~~~~~ 170 (177)
T PF05455_consen 137 KYLKRVALPWP-DPEITSATF-NNGILEIRIRRTEE 170 (177)
T ss_pred ceEeeEecCCC-ccceeeEEE-eCceEEEEEeecCC
Confidence 58899999977 789999999 89999999998764
No 27
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=96.33 E-value=0.017 Score=40.27 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=27.4
Q ss_pred EEEEEECCCCCCcCCcEEEeCCC-CEEEEEEe
Q psy16256 29 YNREFLLPKGTNPESIKSSLSKD-GVLTVEAP 59 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~A~l~~d-GvL~I~~P 59 (74)
|.=.+.||..||.+..+|.|+.+ ++|+|++|
T Consensus 296 y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 296 YRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred eEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 56679999999999999999543 99999998
No 28
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=95.59 E-value=0.17 Score=27.70 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=36.2
Q ss_pred EEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 3 FGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 3 ~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
|++.++.|.++.... ++ ..|.-...|...|+++..+.++ .++.|.|++.|
T Consensus 30 v~~~~~~l~v~~~~~----~~---~~~~~~~~L~~~I~~~~s~~~~-~~~~i~i~L~K 79 (79)
T PF04969_consen 30 VDFTDTSLSVSIKSG----DG---KEYLLEGELFGEIDPDESTWKV-KDNKIEITLKK 79 (79)
T ss_dssp EEEETTEEEEEEEET----TS---CEEEEEEEBSS-BECCCEEEEE-ETTEEEEEEEB
T ss_pred EEEEeeEEEEEEEcc----CC---ceEEEEEEEeeeEcchhcEEEE-ECCEEEEEEEC
Confidence 455666666664321 11 4567777899999999999999 78899999986
No 29
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=92.95 E-value=0.9 Score=27.10 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=40.1
Q ss_pred eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|++..+.|.|++... .+ .+.|.-.+.|...|+++.-+.++ .++.|.|+|.|..
T Consensus 25 ~V~~~~~~l~v~~~~~--~~----~~~y~~~~~L~~~I~pe~s~~~v-~~~kveI~L~K~~ 78 (108)
T cd06465 25 KIKLEPTSLSFKAKGG--GG----GKKYEFDLEFYKEIDPEESKYKV-TGRQIEFVLRKKE 78 (108)
T ss_pred EEEEECCEEEEEEEcC--CC----CeeEEEEeEhhhhccccccEEEe-cCCeEEEEEEECC
Confidence 4566677777776321 01 12355667999999999999999 6899999999987
No 30
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=90.37 E-value=0.58 Score=27.55 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=...|| ++++++|+-++ .+|.|+|++-+..
T Consensus 9 ~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~ 41 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKV-KDGKVQVSAEREN 41 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 455667897 99999999999 7999999998764
No 31
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=90.23 E-value=0.76 Score=26.47 Aligned_cols=32 Identities=6% Similarity=0.188 Sum_probs=27.9
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~ 61 (74)
.|.=.+.|| ++++++|+-.+ .+|.|+|++-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEc
Confidence 567788997 99999999999 799999999754
No 32
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=88.44 E-value=3.1 Score=23.52 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=39.3
Q ss_pred eEEEECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 2 LFGSPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|++.++.|.+++... + + ..|.-.+.|...|++++-+.++ ..+-+.|.+.|...
T Consensus 24 ~v~~~~~~l~~~~~~~---~-~---~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K~~~ 77 (84)
T cd06489 24 SVEFEKRELSATVKLP---S-G---NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIKLKKTEA 77 (84)
T ss_pred EEEEeCCEEEEEEECC---C-C---CcEEEeeecCceecchhcEEEE-eCcEEEEEEEcCCC
Confidence 4566777777776431 1 1 1255567899999999999999 58889999999763
No 33
>PRK10743 heat shock protein IbpA; Provisional
Probab=88.26 E-value=1.6 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=28.8
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=...|| +++.++|.-.+ ++|+|+|++-+..
T Consensus 46 ~~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~ 78 (137)
T PRK10743 46 HYRIAIAVA-GFAESELEITA-QDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECc
Confidence 577778997 99999999999 7999999997654
No 34
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=88.01 E-value=1.1 Score=25.98 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.4
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.|| ++++++|+-++ ++|.|+|++-+..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 466678997 99999999999 7999999997754
No 35
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=87.62 E-value=1.2 Score=25.71 Aligned_cols=33 Identities=45% Similarity=0.525 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.|| +++.++|+-.+ .+|.|+|++-+..
T Consensus 11 ~~~i~~~lP-Gv~~edi~v~~-~~~~L~I~g~~~~ 43 (93)
T cd06471 11 EYIVEADLP-GFKKEDIKLDY-KDGYLTISAKRDE 43 (93)
T ss_pred EEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 566678998 79999999999 7999999987764
No 36
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=87.59 E-value=1.3 Score=25.68 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=29.1
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
+|.=.+.|| +++.++|+-.+ ++|.|+|++.+...
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~ 45 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADE 45 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEccc
Confidence 566678997 79999999999 79999999987654
No 37
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=87.39 E-value=1.3 Score=25.25 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.1
Q ss_pred EEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 27 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 27 r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
..|.=.+.|| ++.+++|+-.+ .+|.|+|++-+...
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeee
Confidence 3677789998 69999999999 79999999987653
No 38
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=87.19 E-value=2.4 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=25.3
Q ss_pred ECCCCCCcCCcEEEeCCC-CEEEEEEeCCCC
Q psy16256 34 LLPKGTNPESIKSSLSKD-GVLTVEAPLPAL 63 (74)
Q Consensus 34 ~LP~~vd~~~i~A~l~~d-GvL~I~~Pk~~~ 63 (74)
.|...||++...-++ .+ ..|.|+++|..+
T Consensus 48 ~L~~~I~~~~s~w~~-~~~~~v~i~L~K~~~ 77 (85)
T cd06467 48 ELYAKVKVDESTWTL-EDGKLLEITLEKRNE 77 (85)
T ss_pred cccCceeEcCCEEEE-eCCCEEEEEEEECCC
Confidence 588899999988899 67 899999999874
No 39
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=85.30 E-value=2.7 Score=26.89 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=...|| +++.++|.-.+ ++|.|+|++-+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 588889997 99999999999 8999999997654
No 40
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=85.02 E-value=2.3 Score=24.66 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=26.5
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~ 61 (74)
+|.=.+.|| +++.++++-++ .+|.|+|++-+.
T Consensus 8 ~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 8 EYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp EEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred EEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 466678997 89999999999 799999999887
No 41
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=82.26 E-value=7.3 Score=22.32 Aligned_cols=35 Identities=9% Similarity=0.016 Sum_probs=30.3
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|.-.+.|-..||++..+-.. ..+-+.|.+.|.++
T Consensus 46 ~y~~~l~L~~~I~~~~s~~~v-~~~kvei~L~K~~~ 80 (87)
T cd06488 46 EFQLDIELWGVIDVEKSSVNM-LPTKVEIKLRKAEP 80 (87)
T ss_pred eEEEEeeccceEChhHcEEEe-cCcEEEEEEEeCCC
Confidence 467777999999999988888 68999999999874
No 42
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=81.36 E-value=3.2 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.| .++++++|+-++ .||.|+|++-+..
T Consensus 8 ~y~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDV-CHFTPDEITVRT-VDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 35556788 589999999999 7999999997643
No 43
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=81.29 E-value=3.4 Score=23.07 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=25.7
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~P 59 (74)
+..=+|.||++++.++++..+ .+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~-~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEI-TPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEE-EcCEEEEEEC
Confidence 345567899999999999999 5677888886
No 44
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=80.33 E-value=3.6 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=27.8
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.| .+++++.|+-.+ .+|.|+|++-+..
T Consensus 8 ~~~v~~dl-pG~~~edI~V~v-~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDV-VQFRPEDIIIQV-FEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEc-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 45666788 589999999999 8999999998654
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=80.19 E-value=11 Score=23.37 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=37.7
Q ss_pred eEEEECCEEEEEEEEEee-cCCCeEE----EEEEEEEECCCCCCcCCcEEEeCCCCEEEEEE
Q psy16256 2 LFGSPNDFPIVHAKHEEK-SDSKSVY----REYNREFLLPKGTNPESIKSSLSKDGVLTVEA 58 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~~~-~~~~~~~----r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~ 58 (74)
.++.+++.|.|..+.... ...++.. ..-.=.+.||++...+++.... .+|-+++.-
T Consensus 88 ~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~~G~i~i~~ 148 (166)
T PF13349_consen 88 EISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-SSGDITIED 148 (166)
T ss_pred EEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-ccccEEEEc
Confidence 467788889888862111 1112211 1345578899999888999999 789998874
No 46
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=78.88 E-value=5 Score=23.21 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=27.7
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.| .++++++|+-.+ .+|.|+|++-+.+
T Consensus 11 ~~~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06497 11 KFTIYLDV-KHFSPEDLTVKV-LDDYVEIHGKHSE 43 (86)
T ss_pred EEEEEEEC-CCCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 56667888 589999999999 7999999997543
No 47
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=75.67 E-value=5.6 Score=23.54 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=15.1
Q ss_pred EEEEEECCCCCCcCCcEEEeCCCCEEEEEE
Q psy16256 29 YNREFLLPKGTNPESIKSSLSKDGVLTVEA 58 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~ 58 (74)
..=+|+||.++...++...+ ...-|.|.+
T Consensus 17 V~v~i~lp~~~~~kdv~V~i-~~~~l~V~~ 45 (93)
T cd06494 17 VFIEVNVPPGTRAKDVKCKL-GSRDISLAV 45 (93)
T ss_pred EEEEEECCCCCceeeEEEEE-EcCEEEEEE
Confidence 33444555555555555555 344555544
No 48
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=74.58 E-value=13 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.7
Q ss_pred ECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 34 LLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 34 ~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
.|-..|+++.-+.++ .++-+.|.+.|..+
T Consensus 57 ~L~~~I~~e~s~~~~-~~~ki~i~L~K~~~ 85 (92)
T cd06468 57 RLLKKIDPEKSSFKV-KTDRIVITLAKKKE 85 (92)
T ss_pred HhhCccCccccEEEE-eCCEEEEEEEeCCC
Confidence 488999999999999 67889999999874
No 49
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=73.50 E-value=12 Score=21.45 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=26.7
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
+|.=.+.|| ++++++|+-.++++++|+|++-+..
T Consensus 10 ~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 10 AHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred eEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 466678896 5899999999943459999997643
No 50
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=72.79 E-value=8.1 Score=22.24 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=26.7
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~ 61 (74)
.|.=...| .++++++|+-.+ .+|.|+|++-+.
T Consensus 8 ~~~v~~dl-pG~~~edi~V~v-~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDV-KHFSPEELKVKV-LGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEEC-CCCCHHHeEEEE-ECCEEEEEEEEc
Confidence 46667788 589999999999 799999999653
No 51
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=72.69 E-value=8.9 Score=22.13 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=28.4
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.|| ++++++|+-++ .++.|+|++-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKT-KDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEE-ECCEEEEEEEECc
Confidence 577788894 99999999999 7899999998754
No 52
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=72.52 E-value=9.2 Score=22.13 Aligned_cols=33 Identities=15% Similarity=0.296 Sum_probs=27.4
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.=.+.| .++++++|+-.+ .+|.|+|++-+..
T Consensus 8 ~~~v~~dl-pG~~~edI~V~v-~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDV-RGFSPEDLSVRV-DGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEEC-CCCChHHeEEEE-ECCEEEEEEEEee
Confidence 45566778 589999999999 7999999998653
No 53
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=70.40 E-value=11 Score=21.43 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=15.3
Q ss_pred CCCCCCcCCcEEEeCCCC-EEEEEEeCCC
Q psy16256 35 LPKGTNPESIKSSLSKDG-VLTVEAPLPA 62 (74)
Q Consensus 35 LP~~vd~~~i~A~l~~dG-vL~I~~Pk~~ 62 (74)
|...||++.-+=.+ .+| .|.|.+.|.+
T Consensus 49 L~~~I~~d~Stw~i-~~~~~l~i~L~K~~ 76 (85)
T cd06493 49 LYSSIDHESSTWII-KENKSLEVSLIKKD 76 (85)
T ss_pred ccCcccccCcEEEE-eCCCEEEEEEEECC
Confidence 44556666555555 344 4666666654
No 54
>cd01724 Sm_D1 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet. Sm subunit D1 heterodimerizes with subunit D2 and three such heterodimers form a hexameric ring structure with alternating D1 and D2 subunits. The D1 - D2 heterodimer also assembles into a heptameric ring containing DB, D3, E, F, and G subunits. Sm-like proteins exist in archaea as well as prokaryotes which form heptameric and hexameric ring structures similar to those found in eukaryotes.
Probab=65.26 E-value=11 Score=22.27 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=17.6
Q ss_pred eEEEEEEEEEECCCCCCcCCcEE
Q psy16256 24 SVYREYNREFLLPKGTNPESIKS 46 (74)
Q Consensus 24 ~~~r~f~R~~~LP~~vd~~~i~A 46 (74)
++.+.--|-+.||+.+|.+..-+
T Consensus 58 ~IRG~nI~yi~lPd~l~~~~~l~ 80 (90)
T cd01724 58 SIRGNNIRYFILPDSLNLDTLLV 80 (90)
T ss_pred EEeCCEEEEEEcCCcCCcchhhh
Confidence 45668889999999998775543
No 55
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=65.04 E-value=8.2 Score=23.41 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.4
Q ss_pred cCCcEEEeCCCCEEEEEEe
Q psy16256 41 PESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 41 ~~~i~A~l~~dGvL~I~~P 59 (74)
...+-+.+ .+|||+|+++
T Consensus 27 ~~d~D~e~-~~gVLti~f~ 44 (105)
T cd00503 27 DADIDVET-QGGVLTLTFG 44 (105)
T ss_pred ccCEeeec-cCCEEEEEEC
Confidence 35688889 7999999998
No 56
>KOG3413|consensus
Probab=64.86 E-value=3.6 Score=26.96 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=18.4
Q ss_pred CCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256 35 LPKGTNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 35 LP~~vd~~~i~A~l~~dGvL~I~~P 59 (74)
|-+.++.+.--+.| .||||+|.++
T Consensus 65 l~e~~~~~~~Dv~y-~~GVLTl~lg 88 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDY-ADGVLTLKLG 88 (156)
T ss_pred HHhhcCcccccccc-ccceEEEEec
Confidence 34455556667889 7999999998
No 57
>PRK02913 hypothetical protein; Provisional
Probab=61.49 E-value=6.5 Score=25.68 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=12.6
Q ss_pred EEeCCCCEEEEEEeC
Q psy16256 46 SSLSKDGVLTVEAPL 60 (74)
Q Consensus 46 A~l~~dGvL~I~~Pk 60 (74)
-+||+||+|.|.+-+
T Consensus 112 mNLSEDgiLVi~Le~ 126 (150)
T PRK02913 112 MNLSEDGILVIDLEQ 126 (150)
T ss_pred cccccCCEEEEEecC
Confidence 367899999999875
No 58
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=59.95 E-value=11 Score=22.73 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.5
Q ss_pred CcEEEeCCCCEEEEEEeC
Q psy16256 43 SIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 43 ~i~A~l~~dGvL~I~~Pk 60 (74)
.+-+.+ .+|||+|+++.
T Consensus 26 d~D~e~-~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCER-AGGVLTLTFEN 42 (102)
T ss_pred Ceeeec-CCCEEEEEECC
Confidence 478888 79999999984
No 59
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=57.01 E-value=14 Score=22.50 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=14.5
Q ss_pred CcEEEeCCCCEEEEEEeC
Q psy16256 43 SIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 43 ~i~A~l~~dGvL~I~~Pk 60 (74)
.+.+.+ .+|||+|+++.
T Consensus 28 d~D~e~-~~gVLti~f~~ 44 (105)
T PRK00446 28 DIDCER-NGGVLTLTFEN 44 (105)
T ss_pred Ceeeec-cCCEEEEEECC
Confidence 378889 79999999985
No 60
>COG4811 Predicted membrane protein [Function unknown]
Probab=56.70 E-value=7.8 Score=25.13 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.4
Q ss_pred EEeCCCCEEEEEEeC
Q psy16256 46 SSLSKDGVLTVEAPL 60 (74)
Q Consensus 46 A~l~~dGvL~I~~Pk 60 (74)
-+|++||+|.|++-.
T Consensus 114 mNLsEdgvLVi~l~~ 128 (152)
T COG4811 114 MNLSEDGVLVIQLEQ 128 (152)
T ss_pred cCcCcCcEEEEEecc
Confidence 368899999999764
No 61
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=56.43 E-value=12 Score=22.70 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.3
Q ss_pred CCcEEEeCCCCEEEEEEeC
Q psy16256 42 ESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 42 ~~i~A~l~~dGvL~I~~Pk 60 (74)
..+.+.+ .+|||+|++|.
T Consensus 30 ~d~d~e~-~~gVLti~~~~ 47 (109)
T PF01491_consen 30 ADIDVER-SGGVLTIEFPD 47 (109)
T ss_dssp STEEEEE-ETTEEEEEETT
T ss_pred CceEEEc-cCCEEEEEECC
Confidence 3688999 79999999974
No 62
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=54.94 E-value=25 Score=20.26 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=12.1
Q ss_pred EEECCCC--CCcCCcEEEeCCCCEEEEEE
Q psy16256 32 EFLLPKG--TNPESIKSSLSKDGVLTVEA 58 (74)
Q Consensus 32 ~~~LP~~--vd~~~i~A~l~~dGvL~I~~ 58 (74)
.|+||.+ ++..+++..+ +.--|.|.+
T Consensus 13 ~v~l~~~~~~~~kdv~v~i-~~~~l~v~~ 40 (87)
T cd06492 13 KVPFKVSFRLKGKDVVVDI-QRKHLKVGL 40 (87)
T ss_pred EEECCCCCCccceEEEEEE-ecCEEEEEE
Confidence 3445443 4555555555 334444444
No 63
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=54.61 E-value=33 Score=21.44 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=29.5
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
+|.=.+.| .+++.++|.-.+ .+|.|+|++-+..
T Consensus 51 ~~~I~~el-PG~~kedI~I~~-~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAEL-PGVDKEDIEITV-EGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEc-CCCChHHeEEEE-ECCEEEEEEEecc
Confidence 68888899 599999999999 7999999999875
No 64
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=54.40 E-value=56 Score=21.50 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=27.8
Q ss_pred EEEECCEEEEEEEEEeecC-----------CCeEEEEEEEEEECCCCCCcCCcEEEe
Q psy16256 3 FGSPNDFPIVHAKHEEKSD-----------SKSVYREYNREFLLPKGTNPESIKSSL 48 (74)
Q Consensus 3 ~~v~~~~L~I~g~~~~~~~-----------~~~~~r~f~R~~~LP~~vd~~~i~A~l 48 (74)
+++++|.|.|++.++.... ..+.++.|.=++.+|.+ ...+.|.+
T Consensus 34 v~v~~g~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afw 88 (212)
T cd02175 34 VEFSDGGLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFF 88 (212)
T ss_pred EEEECCeEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEE
Confidence 5788999999997653211 11455678888888764 33444444
No 65
>PF06173 DUF986: Protein of unknown function (DUF986); InterPro: IPR009328 This family consists of several bacterial putative membrane proteins of unknown function.
Probab=53.62 E-value=10 Score=24.75 Aligned_cols=12 Identities=42% Similarity=0.869 Sum_probs=10.9
Q ss_pred EeCCCCEEEEEE
Q psy16256 47 SLSKDGVLTVEA 58 (74)
Q Consensus 47 ~l~~dGvL~I~~ 58 (74)
++++||+|.|.+
T Consensus 112 NLsEDgILVi~L 123 (149)
T PF06173_consen 112 NLSEDGILVIDL 123 (149)
T ss_pred ccCcCcEEEEEe
Confidence 578999999998
No 66
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=53.19 E-value=13 Score=22.37 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=12.7
Q ss_pred EEEeCCCCEEEEEEeC
Q psy16256 45 KSSLSKDGVLTVEAPL 60 (74)
Q Consensus 45 ~A~l~~dGvL~I~~Pk 60 (74)
-+.+ .+|||+|+++.
T Consensus 30 D~e~-~~gVLti~~~~ 44 (97)
T TIGR03422 30 DVEY-SSGVLTLELPS 44 (97)
T ss_pred cccc-CCCEEEEEECC
Confidence 6778 79999999974
No 67
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=52.86 E-value=66 Score=21.90 Aligned_cols=35 Identities=9% Similarity=0.122 Sum_probs=23.5
Q ss_pred EEEECCEEEEEEEEEeec---CC-C-----------eEEEEEEEEEECCC
Q psy16256 3 FGSPNDFPIVHAKHEEKS---DS-K-----------SVYREYNREFLLPK 37 (74)
Q Consensus 3 ~~v~~~~L~I~g~~~~~~---~~-~-----------~~~r~f~R~~~LP~ 37 (74)
+.+++|.|+|++.++... .. . +.+..|.=+++||.
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 678999999999876431 11 1 23446777778875
No 68
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=49.07 E-value=14 Score=20.30 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=12.0
Q ss_pred CCcEEEeCCCCEEEEEEeCC
Q psy16256 42 ESIKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 42 ~~i~A~l~~dGvL~I~~Pk~ 61 (74)
..|.|.| +||+|.--=|..
T Consensus 3 ~~I~aiY-e~GvlkPl~~~~ 21 (60)
T PF01954_consen 3 KVIEAIY-ENGVLKPLEPVD 21 (60)
T ss_dssp --EEEEE-ETTEEEECS---
T ss_pred ceEEEEE-ECCEEEECCCCC
Confidence 3589999 899998654443
No 69
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=48.70 E-value=3.2 Score=25.89 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=25.5
Q ss_pred EEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 29 YNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
..=-++-|+.||.+.+++.| .=|..+|++=+
T Consensus 53 V~igVp~pe~vD~e~v~~~~-PyG~~~v~vv~ 83 (113)
T PF09585_consen 53 VKIGVPRPEKVDIEAVKAVF-PYGQVTVEVVK 83 (113)
T ss_pred EEEeCCCccccCHHHHHHhC-CCCCceEEEEc
Confidence 44456678999999999999 99998888754
No 70
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=47.03 E-value=11 Score=21.09 Aligned_cols=18 Identities=17% Similarity=0.497 Sum_probs=14.0
Q ss_pred EEEECCCCCCcCCcEEEe
Q psy16256 31 REFLLPKGTNPESIKSSL 48 (74)
Q Consensus 31 R~~~LP~~vd~~~i~A~l 48 (74)
.+|.||++++.+.++.-.
T Consensus 25 ksy~lp~ef~~~~L~~G~ 42 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLKPGM 42 (61)
T ss_pred CEEECCCcccccccCCCC
Confidence 578999999988776533
No 71
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=43.04 E-value=87 Score=20.67 Aligned_cols=16 Identities=13% Similarity=0.081 Sum_probs=13.3
Q ss_pred EEEECCEEEEEEEEEe
Q psy16256 3 FGSPNDFPIVHAKHEE 18 (74)
Q Consensus 3 ~~v~~~~L~I~g~~~~ 18 (74)
+.+++|.|.|++.+..
T Consensus 40 v~v~~G~L~i~~~~~~ 55 (235)
T cd08023 40 AYVEDGNLVITARKEP 55 (235)
T ss_pred eEEECCEEEEEEEECC
Confidence 6788999999998654
No 72
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=42.93 E-value=64 Score=18.41 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=26.7
Q ss_pred EEEEEEECCCCCCcCCcEEEeC-CCCEEEEEEeCCCC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLS-KDGVLTVEAPLPAL 63 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~-~dGvL~I~~Pk~~~ 63 (74)
.|.-.+.|-..|+++. +.++. .-|.+.|.+.|.++
T Consensus 45 ~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 45 SYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKEP 80 (87)
T ss_pred eEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCCC
Confidence 4777778989999875 55552 26899999999874
No 73
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=41.86 E-value=16 Score=22.69 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=24.3
Q ss_pred EEEEEECCCCCCcCCcE---EEeC-CCCEEEEEEeCCCC
Q psy16256 29 YNREFLLPKGTNPESIK---SSLS-KDGVLTVEAPLPAL 63 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~---A~l~-~dGvL~I~~Pk~~~ 63 (74)
|.-...+--++|.++++ -..+ +++.|+|++|.+..
T Consensus 42 ~~~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i 80 (157)
T PF14014_consen 42 VIYPGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEI 80 (157)
T ss_pred EEEEEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEE
Confidence 34444444577777777 5553 68999999998763
No 74
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=41.82 E-value=51 Score=19.78 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEEEECCCC-CCcCCcEEEeCCCCEEEEEEe
Q psy16256 28 EYNREFLLPKG-TNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 28 ~f~R~~~LP~~-vd~~~i~A~l~~dGvL~I~~P 59 (74)
+..=.|+||++ +...++.+.+ ..--|.|.+.
T Consensus 15 eV~V~i~lp~~~~~~kdv~v~i-~~~~l~v~~~ 46 (102)
T cd06495 15 DVEVRVPVPKDVVKGRQVSVDL-QSSSIRVSVR 46 (102)
T ss_pred eEEEEEECCCCCccceEEEEEE-EcCEEEEEEe
Confidence 56667788887 4577788888 5677777773
No 75
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=40.64 E-value=41 Score=17.57 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=13.3
Q ss_pred eEEEECCEEEEEEEE
Q psy16256 2 LFGSPNDFPIVHAKH 16 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~ 16 (74)
.|.+.++.+.++|.-
T Consensus 20 ~v~v~~g~v~L~G~v 34 (64)
T PF04972_consen 20 SVSVENGVVTLSGEV 34 (64)
T ss_dssp EEEEECTEEEEEEEE
T ss_pred EEEEECCEEEEEeeC
Confidence 578999999999975
No 76
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=37.59 E-value=60 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 37 KGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 37 ~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
.+...=.|+-.++.||+|+|++--... .....|.|
T Consensus 487 ~G~~~I~Vtf~iD~nGiL~V~a~d~~t-g~~~~~~i 521 (657)
T PTZ00186 487 RGVPQIEVTFDIDANGICHVTAKDKAT-GKTQNITI 521 (657)
T ss_pred CCCCcEEEEEEEcCCCEEEEEEEEccC-CcEEEEEe
Confidence 344334578889999999999975542 34455554
No 77
>PRK00296 minE cell division topological specificity factor MinE; Reviewed
Probab=37.50 E-value=62 Score=18.97 Aligned_cols=25 Identities=32% Similarity=0.678 Sum_probs=17.6
Q ss_pred CCCcCCcEEEeCCCC---EEEEEEeCCC
Q psy16256 38 GTNPESIKSSLSKDG---VLTVEAPLPA 62 (74)
Q Consensus 38 ~vd~~~i~A~l~~dG---vL~I~~Pk~~ 62 (74)
.||.+.++-.++.+| +|.+.++.+.
T Consensus 55 ~Id~~~v~i~l~~~~~~~~Le~nI~lp~ 82 (86)
T PRK00296 55 QIDPDKVSVQLDKDGDISTLELNVTLPE 82 (86)
T ss_pred ecChhhEEEEEEeCCCeEEEEEEEEcCC
Confidence 467888888887666 6666666554
No 78
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=37.32 E-value=17 Score=26.07 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=13.8
Q ss_pred cCCcEEEeCCCCEEEEE
Q psy16256 41 PESIKSSLSKDGVLTVE 57 (74)
Q Consensus 41 ~~~i~A~l~~dGvL~I~ 57 (74)
..+-||.| +||||+|.
T Consensus 345 k~~wk~~l-k~g~~~~~ 360 (375)
T PF03153_consen 345 KNKWKCTL-KDGIMHIN 360 (375)
T ss_dssp TTEEEEEE-EEEEEEET
T ss_pred cceeEEEe-eeeEEEEC
Confidence 56789999 99999984
No 79
>COG1965 CyaY Protein implicated in iron transport, frataxin homolog [Inorganic ion transport and metabolism]
Probab=35.14 E-value=44 Score=20.62 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.2
Q ss_pred cEEEeCCCCEEEEEEeCC
Q psy16256 44 IKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 44 i~A~l~~dGvL~I~~Pk~ 61 (74)
+-|.+ ++|||+|+.+..
T Consensus 30 ~D~d~-qg~VlTl~f~ng 46 (106)
T COG1965 30 IDCEI-QGGVLTLTFDNG 46 (106)
T ss_pred cceec-CCCEEEEEECCC
Confidence 66888 799999999854
No 80
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion]
Probab=34.08 E-value=1.4e+02 Score=20.82 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=21.1
Q ss_pred EECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCC
Q psy16256 5 SPNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPES 43 (74)
Q Consensus 5 v~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~ 43 (74)
+.+|.|+|+|+++-.-+.+...-.|.= +.=|++|+.+.
T Consensus 157 LpNGNL~I~G~Kev~vN~~~e~i~vsG-vVRP~DI~~~N 194 (230)
T COG2063 157 LPNGNLVIEGEKEVRVNGEKEIIRVSG-VVRPDDISGDN 194 (230)
T ss_pred cCCCCEEEEEEEEEEECCceEEEEEee-eEcccccCCCC
Confidence 357899999998766444321111211 12267776654
No 81
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=33.42 E-value=58 Score=26.82 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=25.6
Q ss_pred CCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 38 GTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 38 ~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
.||...+.-.|+.+|.|++.+|-.+.+..-..|.|
T Consensus 829 ~vdg~ev~F~y~~~g~l~~~lp~~~~~~~~~~v~~ 863 (865)
T PLN02982 829 YLNGKEVGFEWEEEGKLSFFVPWTEESGGISDVSF 863 (865)
T ss_pred EECCeEeeeEECCCCeEEEEccCCcccCceeeEEE
Confidence 45777888899767999999998775333455544
No 82
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=32.00 E-value=50 Score=22.09 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=21.8
Q ss_pred EEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 31 REFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 31 R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
|-...|.-+ |+.+++++ ++.++++.-||-+
T Consensus 3 ri~k~~i~~-P~gV~V~i-~~~~v~vkGpkGe 32 (178)
T COG0097 3 RIGKRPIVI-PAGVTVSI-EGQVVTVKGPKGE 32 (178)
T ss_pred ceeeccEec-CCCeEEEE-eccEEEEECCCcE
Confidence 344445555 77788899 6899999999854
No 83
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=31.50 E-value=68 Score=18.34 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=13.7
Q ss_pred CeEEEECCEEEEEEEE
Q psy16256 1 MLFGSPNDFPIVHAKH 16 (74)
Q Consensus 1 ~~~~v~~~~L~I~g~~ 16 (74)
|.+.++++.|.|++-.
T Consensus 1 l~y~v~~~~l~I~~~~ 16 (100)
T PF10882_consen 1 LRYEVDDDGLIIRWPF 16 (100)
T ss_pred CEEEEECCEEEEEEcc
Confidence 6799999999998753
No 84
>PRK01379 cyaY frataxin-like protein; Provisional
Probab=31.07 E-value=52 Score=19.97 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=12.9
Q ss_pred CcEEEeCCCCEEEEEEe
Q psy16256 43 SIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 43 ~i~A~l~~dGvL~I~~P 59 (74)
.+-+.+ .+|||+|+.+
T Consensus 29 d~D~e~-~~gVLtl~~~ 44 (103)
T PRK01379 29 SIDVDL-QGDILNLDTD 44 (103)
T ss_pred ceeeec-cCCEEEEEeC
Confidence 477888 6999999954
No 85
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=30.92 E-value=65 Score=18.74 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=15.5
Q ss_pred ECCCCCCcCCcEEEeCCCC
Q psy16256 34 LLPKGTNPESIKSSLSKDG 52 (74)
Q Consensus 34 ~LP~~vd~~~i~A~l~~dG 52 (74)
.||..+|++.+..+. ..|
T Consensus 30 ~Lp~~~d~~Sl~V~~-~g~ 47 (104)
T PF13600_consen 30 GLPPSLDPDSLRVSG-EGG 47 (104)
T ss_pred CCCcccCCCcEEEEe-cCC
Confidence 589999999999998 454
No 86
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=29.70 E-value=1.6e+02 Score=20.32 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=20.6
Q ss_pred ECCEEEEEEEEEeecCCCeEEEEEEEEEECCCCCCcCC
Q psy16256 6 PNDFPIVHAKHEEKSDSKSVYREYNREFLLPKGTNPES 43 (74)
Q Consensus 6 ~~~~L~I~g~~~~~~~~~~~~r~f~R~~~LP~~vd~~~ 43 (74)
.+|.|.|+|+++-.-..+..+=.|+= +.=|++|+++.
T Consensus 155 pNGNLvI~GeK~i~vN~~~e~irlsG-iVRP~DI~~~N 191 (230)
T PRK12700 155 PNGNLQIAGEKQIAINRGSEYVRFSG-VVDPRSITGSN 191 (230)
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEEE-EECHHHCCCCC
Confidence 57899999998765433211111111 22267777754
No 87
>PRK13410 molecular chaperone DnaK; Provisional
Probab=28.29 E-value=82 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=19.8
Q ss_pred CCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 42 ESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 42 ~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
=.|+-.++.||+|+|++-... ......|+|
T Consensus 467 I~v~f~id~nGiL~V~a~d~~-tg~~~~~~i 496 (668)
T PRK13410 467 VQVAFDIDANGILQVSATDRT-TGREQSVTI 496 (668)
T ss_pred EEEEEEECCCcEEEEEEEEcC-CCceeeeee
Confidence 347788899999999984332 123445555
No 88
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=28.24 E-value=66 Score=21.05 Aligned_cols=27 Identities=22% Similarity=0.514 Sum_probs=18.2
Q ss_pred EEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 30 NREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 30 ~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
...+.+|++| ++.+ +++.++|+-|+-.
T Consensus 5 ~~~I~IP~~V-----~v~~-~~~~v~v~Gp~G~ 31 (175)
T TIGR03654 5 KKPIAIPAGV-----EVTI-DGNVVTVKGPKGE 31 (175)
T ss_pred ccceecCCCc-----EEEE-eCCEEEEEcCCeE
Confidence 3456777765 5667 6778888877643
No 89
>PRK13988 cell division topological specificity factor MinE; Provisional
Probab=28.00 E-value=76 Score=19.13 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=19.7
Q ss_pred CCCcCCcEEEeCCC---CEEEEEEeCCCC
Q psy16256 38 GTNPESIKSSLSKD---GVLTVEAPLPAL 63 (74)
Q Consensus 38 ~vd~~~i~A~l~~d---GvL~I~~Pk~~~ 63 (74)
+||.+++.-.++.+ .+|.+.+|-...
T Consensus 57 ~Id~~~v~V~l~~~~~~~~L~~nIPi~~v 85 (97)
T PRK13988 57 EIDPEEGEVSLETEDRMTALVANLPIRRV 85 (97)
T ss_pred eeCccceEEEEEeCCCceEEEEEeeeecc
Confidence 56788888888554 489999997653
No 90
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=27.22 E-value=73 Score=18.05 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=12.2
Q ss_pred CCCCEEEEEEeCCCC
Q psy16256 49 SKDGVLTVEAPLPAL 63 (74)
Q Consensus 49 ~~dGvL~I~~Pk~~~ 63 (74)
+.+|.|.+-+||+..
T Consensus 8 ~~~g~l~~YvpKKDL 22 (67)
T TIGR02934 8 NRAGELSAYVPKKDL 22 (67)
T ss_pred CCCCCEEEEEECCcc
Confidence 457889999999875
No 91
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=26.98 E-value=44 Score=18.30 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=11.3
Q ss_pred EEEeCCCCEEEEEEeC
Q psy16256 45 KSSLSKDGVLTVEAPL 60 (74)
Q Consensus 45 ~A~l~~dGvL~I~~Pk 60 (74)
-..+ ++|+|.|.+.-
T Consensus 43 ~~~i-~~g~L~i~v~~ 57 (89)
T PF05258_consen 43 PVSI-KDGTLVIEVDS 57 (89)
T ss_pred EEEE-ECCEEEEEECC
Confidence 3456 69999998764
No 92
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=26.78 E-value=72 Score=17.44 Aligned_cols=11 Identities=45% Similarity=0.854 Sum_probs=8.9
Q ss_pred EeCCCCEEEEEE
Q psy16256 47 SLSKDGVLTVEA 58 (74)
Q Consensus 47 ~l~~dGvL~I~~ 58 (74)
.+ .+|+|+|++
T Consensus 63 ~i-~~G~l~i~V 73 (76)
T PF08479_consen 63 DI-SDGVLTIRV 73 (76)
T ss_dssp EE-TTSEEEEEE
T ss_pred ec-CCCEEEEEE
Confidence 56 799999876
No 93
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=26.61 E-value=1.3e+02 Score=23.32 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=21.5
Q ss_pred CCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 38 GTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 38 ~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
+...=.++-.++.||+|+|++--... .....+.|
T Consensus 449 g~~~i~v~f~id~~gil~V~a~~~~t-~~~~~~~i 482 (599)
T TIGR01991 449 GAARIRVTFQVDADGLLTVSAQEQST-GVEQSIQV 482 (599)
T ss_pred CCCcEEEEEEECCCCeEEEEEEECCC-CcEEEEec
Confidence 33344577888999999999953321 23344544
No 94
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=26.49 E-value=1.8e+02 Score=20.08 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=21.1
Q ss_pred EECCEEEEEEEEEeecCC--CeE-EEEEEEEEECCCCCCcCC
Q psy16256 5 SPNDFPIVHAKHEEKSDS--KSV-YREYNREFLLPKGTNPES 43 (74)
Q Consensus 5 v~~~~L~I~g~~~~~~~~--~~~-~r~f~R~~~LP~~vd~~~ 43 (74)
+.+|.|.|+|+++-.-.. .|+ .+-..| |++|+++.
T Consensus 153 lpNGnL~I~GeK~v~vN~e~e~i~lsGvVR----P~DI~~~N 190 (230)
T PRK12701 153 LANGNMVVQGEKWVRINQGNEFVRLSGIVR----PQDIKADN 190 (230)
T ss_pred CCCCCEEEEEEEEEEECCCeEEEEEEEEEC----HHHCCCCC
Confidence 357899999998765433 232 122222 67777754
No 95
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.71 E-value=2.2e+02 Score=19.57 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=20.5
Q ss_pred EECCEEEEEEEEEeecCCC--eE-EEEEEEEEECCCCCCcCC
Q psy16256 5 SPNDFPIVHAKHEEKSDSK--SV-YREYNREFLLPKGTNPES 43 (74)
Q Consensus 5 v~~~~L~I~g~~~~~~~~~--~~-~r~f~R~~~LP~~vd~~~ 43 (74)
+.+|.|.|+|+++-.-..+ ++ ..-..| |++|+++.
T Consensus 144 lpNGnL~I~GeK~i~vN~e~e~i~~sGvVR----P~DI~~~N 181 (221)
T PRK12407 144 LPNGVLVIRGEKWLTLNQGDEYMRVTGLVR----ADDIARDN 181 (221)
T ss_pred CCCCCEEEEEEEEEEECCCEEEEEEEEEEC----HHHCCCCC
Confidence 3578999999987654332 32 112222 67777654
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=25.64 E-value=2.5e+02 Score=20.02 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=27.2
Q ss_pred EEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCCCC
Q psy16256 29 YNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 63 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~ 63 (74)
|.-.+.|-..|+++..+-++ ..--+.|.+.|...
T Consensus 203 y~~~~~L~~~I~p~~s~~~v-~~~Kiei~l~K~~~ 236 (356)
T PLN03088 203 YHLQPRLFGKIIPDKCKYEV-LSTKIEIRLAKAEP 236 (356)
T ss_pred eeecccccccccccccEEEE-ecceEEEEEecCCC
Confidence 44457888999999999988 45689999998763
No 97
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.58 E-value=2.1e+02 Score=19.77 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=20.3
Q ss_pred ECCEEEEEEEEEeecCCC--eE-EEEEEEEEECCCCCCcCC
Q psy16256 6 PNDFPIVHAKHEEKSDSK--SV-YREYNREFLLPKGTNPES 43 (74)
Q Consensus 6 ~~~~L~I~g~~~~~~~~~--~~-~r~f~R~~~LP~~vd~~~ 43 (74)
.+|.|+|+|+++-.-..+ ++ .+-..| |++|+++.
T Consensus 161 PNGNLvI~G~k~v~vN~e~~~i~lsGvVR----P~DI~~~N 197 (236)
T PRK12696 161 PGGLMQVEGARETRVNDETQYIVVSGLVR----PRDIGPDN 197 (236)
T ss_pred CCCCEEEEEEEEEEECCCEEEEEEEEEEC----HHHCCCCC
Confidence 478999999987654332 22 122222 67777754
No 98
>PF02200 STE: STE like transcription factor; InterPro: IPR003120 This family consists of transcription factors related to STE and is found associated with the C2H2 zinc finger in some proteins.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.37 E-value=1.2e+02 Score=18.61 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256 29 YNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~P 59 (74)
.-|+|.||.+- -|+|.| =||...|+.-
T Consensus 3 ~irr~~L~~~e---~isCV~-Wn~l~~ItGT 29 (110)
T PF02200_consen 3 VIRRYYLPNGE---FISCVL-WNNLFHITGT 29 (110)
T ss_pred eeeEEecCCCC---EEEEEE-EccEEEEecc
Confidence 35889998754 899999 7999999854
No 99
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=25.30 E-value=79 Score=20.70 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCcCCcEEEeCCCCEEEEEEeCC
Q psy16256 29 YNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61 (74)
Q Consensus 29 f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~ 61 (74)
..+.+.+|++|+ +.+ +++.++|.-|+-
T Consensus 5 g~~~I~IP~~V~-----v~~-~~~~v~vkGp~G 31 (178)
T PRK05498 5 GKKPIAIPAGVE-----VTI-NGNVVTVKGPKG 31 (178)
T ss_pred cccceecCCCCE-----EEE-ECCEEEEECCCE
Confidence 345678887764 567 677777777764
No 100
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=25.28 E-value=51 Score=17.92 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=12.6
Q ss_pred EEEeCCCCEEEEEEeCCC
Q psy16256 45 KSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 45 ~A~l~~dGvL~I~~Pk~~ 62 (74)
.|.| ++| +.|.+|---
T Consensus 23 ~A~l-etG-~~i~VP~FI 38 (56)
T cd05794 23 PATL-ETG-AEVQVPLFI 38 (56)
T ss_pred eEEE-CCC-CEEEcCCee
Confidence 4888 799 689999653
No 101
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.07 E-value=2e+02 Score=19.89 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=20.5
Q ss_pred EECCEEEEEEEEEeecCCC--eE-EEEEEEEEECCCCCCcCC
Q psy16256 5 SPNDFPIVHAKHEEKSDSK--SV-YREYNREFLLPKGTNPES 43 (74)
Q Consensus 5 v~~~~L~I~g~~~~~~~~~--~~-~r~f~R~~~LP~~vd~~~ 43 (74)
+.+|.|.|+|+++-.-..+ |+ .+-..| |++|+.+.
T Consensus 150 lpNGnL~I~GeK~i~vN~e~e~IrlsGvVR----P~DI~~~N 187 (226)
T PRK12697 150 LPNGNLVVSGEKQMLINQGNEFVRFSGVVN----PNTISGAN 187 (226)
T ss_pred CCCCCEEEEEEEEEEECCCEEEEEEEEEEC----HHHCCCCC
Confidence 3578999999987654332 32 122222 67777653
No 102
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=24.59 E-value=1e+02 Score=25.16 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=24.5
Q ss_pred CCCcCCcEEEeCCC-CEEEEEEeCCCCCCCCeEEec
Q psy16256 38 GTNPESIKSSLSKD-GVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 38 ~vd~~~i~A~l~~d-GvL~I~~Pk~~~~~~~r~I~I 72 (74)
.||...+.-.|+.+ |.|+|.+|-.+.+..-..|.|
T Consensus 721 ~vd~~~~~f~y~~~~g~~~~~~~~~~~~~~~~~~~~ 756 (758)
T PLN02355 721 TVDSKEVEFRYEEGSGLVTFDLGVPEEELYLWNVTV 756 (758)
T ss_pred EECCeEeeeEEcCCCCeEEEEcCCCcccCceeEEEE
Confidence 35667778888553 999999998775434456655
No 103
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=24.48 E-value=1.3e+02 Score=17.57 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=15.1
Q ss_pred CCCcCCcEEEeCCCC---EEEEEEeCC
Q psy16256 38 GTNPESIKSSLSKDG---VLTVEAPLP 61 (74)
Q Consensus 38 ~vd~~~i~A~l~~dG---vL~I~~Pk~ 61 (74)
.||++++.-.++.+| +|.+.++.+
T Consensus 56 ~Id~~~v~i~l~~~~~~~~Le~nI~Lp 82 (84)
T PRK13989 56 KISPDDIRVSLERQDNLEVLEVKIELP 82 (84)
T ss_pred eeCccceEEEEEeCCCeEEEEEEeECC
Confidence 367777887776555 555555543
No 104
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=24.21 E-value=2e+02 Score=20.02 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=20.7
Q ss_pred EECCEEEEEEEEEeecCCC--eE-EEEEEEEEECCCCCCcCC
Q psy16256 5 SPNDFPIVHAKHEEKSDSK--SV-YREYNREFLLPKGTNPES 43 (74)
Q Consensus 5 v~~~~L~I~g~~~~~~~~~--~~-~r~f~R~~~LP~~vd~~~ 43 (74)
+.+|.|.|+|+++-.-..+ ++ ..-+.| |++|+.+.
T Consensus 158 LPNGNLvI~G~kev~vN~e~~~i~vsGvVR----P~DI~~~N 195 (234)
T PRK12788 158 LPNGNLLISGSQEVRVNYEMRVLNVGGIVR----PLDITRNN 195 (234)
T ss_pred cCCCCEEEEEEEEEEECCCEEEEEEEEEEC----HHHCCCCC
Confidence 3578999999988654332 22 122222 67776654
No 105
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=24.11 E-value=2.7e+02 Score=19.80 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=13.4
Q ss_pred EEEECCEEEEEEEEEe
Q psy16256 3 FGSPNDFPIVHAKHEE 18 (74)
Q Consensus 3 ~~v~~~~L~I~g~~~~ 18 (74)
+.+.+|.|+|++.++.
T Consensus 43 v~v~~G~L~I~a~~~~ 58 (295)
T cd02180 43 VTTINGSLRITMDQFR 58 (295)
T ss_pred eEecCCeEEEEEEeec
Confidence 5788999999998753
No 106
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=23.87 E-value=1.5e+02 Score=23.05 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=19.6
Q ss_pred CcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 43 SIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 43 ~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
.|+-.++.||+|+|++-.... .....|.|
T Consensus 448 ~vtf~id~~Gil~V~a~~~~t-~~~~~~~i 476 (595)
T PRK01433 448 EVTFAIDADGILSVSAYEKIS-NTSHAIEV 476 (595)
T ss_pred EEEEEECCCCcEEEEEEEcCC-CcEEEEEe
Confidence 466678999999999875442 23444444
No 107
>KOG2853|consensus
Probab=23.75 E-value=23 Score=26.82 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=14.7
Q ss_pred EEEEEEEEECCCCCCcCCc
Q psy16256 26 YREYNREFLLPKGTNPESI 44 (74)
Q Consensus 26 ~r~f~R~~~LP~~vd~~~i 44 (74)
.+-...+|.||++|+.+-.
T Consensus 134 vGGi~QQFSlpEnIqmSLF 152 (509)
T KOG2853|consen 134 VGGICQQFSLPENIQMSLF 152 (509)
T ss_pred ecceeeecccchhhhhhhH
Confidence 3468999999999876533
No 108
>PF10517 DM13: Electron transfer DM13; InterPro: IPR019545 This domain of unknown function is present in proteins of Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana. In some proteins it is found in either one or two copies, N-terminal to the DOMON domain. Proteins with the DM13 and DOMON domains include Skeletor, which is part of a macromolecular complex that forms the spindle matrix []. The DM13 domain is also a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins []. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme [].
Probab=23.64 E-value=39 Score=20.07 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=14.9
Q ss_pred EE--EEEEECCCCCCcCCcEE
Q psy16256 28 EY--NREFLLPKGTNPESIKS 46 (74)
Q Consensus 28 ~f--~R~~~LP~~vd~~~i~A 46 (74)
.| ...|.||.++|.++++.
T Consensus 70 ~~~~~~~~~LP~~~~~~d~~~ 90 (108)
T PF10517_consen 70 SYNGDQTYTLPAGVDLDDYKW 90 (108)
T ss_pred ccCCCEEEECCCCCCHHHCCE
Confidence 45 77899999999877654
No 109
>TIGR02058 lin0512_fam conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus.
Probab=23.50 E-value=16 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=21.5
Q ss_pred EECC-CCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 33 FLLP-KGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 33 ~~LP-~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
++-| +.||.+.++|.| .=|.-+|++-.
T Consensus 58 Vp~p~e~vD~e~v~~~~-PyG~~~v~vv~ 85 (116)
T TIGR02058 58 VPYDLDQLDEDKVKAII-PYGTVTVEVED 85 (116)
T ss_pred CCCchHhcCHHHHHHhC-CCCeeEEEEEc
Confidence 3445 669999999999 89998888753
No 110
>PF12431 CitT: Transcriptional regulator
Probab=23.25 E-value=42 Score=15.79 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=6.3
Q ss_pred ECCCCCCc
Q psy16256 34 LLPKGTNP 41 (74)
Q Consensus 34 ~LP~~vd~ 41 (74)
.||.+||.
T Consensus 22 ~LPKGID~ 29 (30)
T PF12431_consen 22 RLPKGIDE 29 (30)
T ss_pred CCCCCccc
Confidence 49999984
No 111
>PF14913 DPCD: DPCD protein family
Probab=22.98 E-value=1.5e+02 Score=20.26 Aligned_cols=34 Identities=15% Similarity=0.382 Sum_probs=26.1
Q ss_pred EEEEEEECCC------CCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 28 EYNREFLLPK------GTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 28 ~f~R~~~LP~------~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
.|...|.+|+ ..+.+.++-.. .+..|.|+-.|+.
T Consensus 131 KYyKk~~IPDl~R~~l~l~~~~ls~~h-~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 131 KYYKKFSIPDLDRCGLPLEQSALSFAH-QNNTLIISYKKPK 170 (194)
T ss_pred cceeEecCCcHHhhCCCcchhhceeee-ecCeEEEEecCcH
Confidence 4777788876 45778888888 7889999888764
No 112
>PHA02745 hypothetical protein; Provisional
Probab=22.84 E-value=74 Score=22.54 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.0
Q ss_pred EEEEEEECCCCCCcCCcEEEe
Q psy16256 28 EYNREFLLPKGTNPESIKSSL 48 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l 48 (74)
.=.|+|.||++.|+.+-+=+|
T Consensus 121 ~~~~~f~LPPeYDpnDsRWTL 141 (265)
T PHA02745 121 QQIRKFTLPPEYDPNDSRWTL 141 (265)
T ss_pred ccceeEecCCCCCCCCCccee
Confidence 445899999999998876655
No 113
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=22.78 E-value=60 Score=20.02 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=13.9
Q ss_pred EEEEEEEECCCCCCcCCcE
Q psy16256 27 REYNREFLLPKGTNPESIK 45 (74)
Q Consensus 27 r~f~R~~~LP~~vd~~~i~ 45 (74)
.-|+|+|.||.+.....+-
T Consensus 70 ~wYr~~f~lp~~~~~~~~~ 88 (167)
T PF02837_consen 70 AWYRRTFTLPADWKGKRVF 88 (167)
T ss_dssp EEEEEEEEESGGGTTSEEE
T ss_pred EEEEEEEEeCchhcCceEE
Confidence 4689999999987544443
No 114
>KOG0100|consensus
Probab=22.69 E-value=1.6e+02 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.6
Q ss_pred ECCCCCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 34 LLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 34 ~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
+-|.+|-.=.++-.++.||+|.|++--+.. ...-+|.|
T Consensus 496 PAPRGvpqIEVtFevDangiL~VsAeDKgt-g~~~kitI 533 (663)
T KOG0100|consen 496 PAPRGVPQIEVTFEVDANGILQVSAEDKGT-GKKEKITI 533 (663)
T ss_pred CCCCCCccEEEEEEEccCceEEEEeeccCC-CCcceEEE
Confidence 345677777777888889999999986642 34445554
No 115
>PF10365 DUF2436: Domain of unknown function (DUF2436); InterPro: IPR018832 Gingipains R and K are endopeptidases with specificity for arginyl and lysyl bonds, respectively. Like other cysteine peptidases, they require reducing conditions for activity. They are maximally active at approximately neutral pH. Gingipains R and K are secreted by the bacterium Porphyromonas gingivalis (Bacteroides gingivalis). The bacterium is a major pathogen in periodontal disease, and the many ways in which the activities of the gingipains may contribute to the disease processes have been reviewed []. These enzymes are also involved in the hemagglutinating activity of the organisms. This entry represents a central region found in gingipain K peptidases, active on lysyl bonds; they belong to the MEROPS peptidase family C25 (gingipain family, clan CD).
Probab=22.63 E-value=1.1e+02 Score=20.09 Aligned_cols=29 Identities=21% Similarity=0.578 Sum_probs=23.8
Q ss_pred EEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 32 EFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 32 ~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
.|.+|.+.|++.-.-.+--+|.-.|.+|-
T Consensus 78 EYkiP~NADps~tpq~mv~dG~~~i~IPa 106 (161)
T PF10365_consen 78 EYKIPANADPSTTPQNMVVDGEASIDIPA 106 (161)
T ss_pred eEeccCCCCCccCcceEEecCceEEEecC
Confidence 57899999998777776678988888885
No 116
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=22.50 E-value=2.4e+02 Score=19.28 Aligned_cols=16 Identities=19% Similarity=0.435 Sum_probs=12.4
Q ss_pred ECCEEEEEEEEEeecC
Q psy16256 6 PNDFPIVHAKHEEKSD 21 (74)
Q Consensus 6 ~~~~L~I~g~~~~~~~ 21 (74)
.+|.|+|+|+++-.-.
T Consensus 147 pNGnLvI~G~K~i~vN 162 (222)
T PRK00249 147 PNGNLVIRGEKEVRVN 162 (222)
T ss_pred CCCcEEEEEEEEEEEC
Confidence 4689999999876543
No 117
>PF07048 DUF1331: Protein of unknown function (DUF1331); InterPro: IPR009762 This family consists of several Circovirus proteins of around 35 residues in length. Members of this family are described as Orf10 proteins and their function is unknown.
Probab=22.36 E-value=43 Score=16.26 Aligned_cols=12 Identities=50% Similarity=0.534 Sum_probs=8.9
Q ss_pred CCCEEEEEEeCC
Q psy16256 50 KDGVLTVEAPLP 61 (74)
Q Consensus 50 ~dGvL~I~~Pk~ 61 (74)
..|+|++.+--.
T Consensus 5 qegvltvvaltv 16 (35)
T PF07048_consen 5 QEGVLTVVALTV 16 (35)
T ss_pred ccceEEEEEEEE
Confidence 579999887543
No 118
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=22.06 E-value=70 Score=17.97 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=10.6
Q ss_pred eCCCCEEEEEEeCCCC
Q psy16256 48 LSKDGVLTVEAPLPAL 63 (74)
Q Consensus 48 l~~dGvL~I~~Pk~~~ 63 (74)
-+.+|.|.+-+||+..
T Consensus 7 ~~~~G~ls~YVpKKDL 22 (64)
T PF06988_consen 7 KNGAGGLSAYVPKKDL 22 (64)
T ss_dssp E-SS--EEEEETTTTE
T ss_pred eCCCcCEEEEEeCCcc
Confidence 3467999999999874
No 119
>PF07196 Flagellin_IN: Flagellin hook IN motif; InterPro: IPR010810 The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologues []. This motif is found in single copy or repeated in various flagellar proteins. Conserved Ile-Asn (IN) residues are seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.; GO: 0006928 cellular component movement, 0043064 flagellum organization, 0009288 bacterial-type flagellum; PDB: 3K8V_A 2ZBI_B 3K8W_A.
Probab=21.71 E-value=1.2e+02 Score=15.71 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.7
Q ss_pred CCcEEEeCCC-CEEEEEE
Q psy16256 42 ESIKSSLSKD-GVLTVEA 58 (74)
Q Consensus 42 ~~i~A~l~~d-GvL~I~~ 58 (74)
..|+|.+..+ |-|.++-
T Consensus 37 tGV~As~~~~~~~L~lts 54 (56)
T PF07196_consen 37 TGVTASIDNDGGRLVLTS 54 (56)
T ss_dssp HSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEe
Confidence 4688999666 8888763
No 120
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=21.36 E-value=1.3e+02 Score=24.63 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCCcCCcEEEeCCCCEEEEEEeCCCCCCCCeEEec
Q psy16256 38 GTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72 (74)
Q Consensus 38 ~vd~~~i~A~l~~dGvL~I~~Pk~~~~~~~r~I~I 72 (74)
.||...+.-.| ++|.|++.+|-.+. ..-..|.|
T Consensus 743 ~v~~~~~~f~y-~~g~~~~~~~~~~~-~~~~~v~~ 775 (777)
T PLN02711 743 KIDGEEVEFGY-EDCMVVVQVPWSGS-SGLSLIEY 775 (777)
T ss_pred EECCEEeeeEe-cCCEEEEEecCCCc-CCceeEEE
Confidence 45777888999 57999999998773 34455554
No 121
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=21.26 E-value=1.2e+02 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=25.6
Q ss_pred CCCcCCcEEEeCCC-CEEEEEEeCCCCCCCCeEEecc
Q psy16256 38 GTNPESIKSSLSKD-GVLTVEAPLPALGAPEKLIPIA 73 (74)
Q Consensus 38 ~vd~~~i~A~l~~d-GvL~I~~Pk~~~~~~~r~I~I~ 73 (74)
.||...+.-.|+.+ |.|+|.+|-.+.+..-..|.|.
T Consensus 738 ~vd~~~~~f~y~~~sg~~~~~l~~~~~~~~~~~v~~~ 774 (775)
T PLN02219 738 AVGSTETDFTYDAEVGLLTLTLPVTEEEMYRWHVEIQ 774 (775)
T ss_pred EECCEEeeeEEcCCCCeEEEEccCCcccCceeeEEEe
Confidence 45677788889553 9999999987754345566553
No 122
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=21.15 E-value=1.2e+02 Score=24.67 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=24.1
Q ss_pred CCCcCCcEEEeCCC-CEEEEEEeCCCCCCC-CeEEec
Q psy16256 38 GTNPESIKSSLSKD-GVLTVEAPLPALGAP-EKLIPI 72 (74)
Q Consensus 38 ~vd~~~i~A~l~~d-GvL~I~~Pk~~~~~~-~r~I~I 72 (74)
.||...+.-.|+.+ |.|++.+|..+.+.. -..|.|
T Consensus 712 ~v~~~~~~f~y~~~~g~~~~~~~~~~~~~~~~~~v~~ 748 (750)
T PLN02684 712 VVESNEIAFEYDSSSGLVTFELDKMPEEGKRLHLVEV 748 (750)
T ss_pred EECCEEEeeEEcCCCCeEEEEcCCCccccCcceEEEE
Confidence 35666778888543 999999998774332 455655
No 123
>PF10341 TPP1: Shelterin complex subunit, TPP1/ACD; InterPro: IPR019437 EST3 is a component of the telomerase holoenzyme, involved in telomere replication. It has been demonstrated that Est3 dimerises and binds to DNA and RNA. Furthermore, Est3 stimulates the dissociation of RNA/DNA hetero-duplexes [, ]. ; GO: 0042162 telomeric DNA binding, 0007004 telomere maintenance via telomerase, 0032508 DNA duplex unwinding, 0000781 chromosome, telomeric region, 0005697 telomerase holoenzyme complex; PDB: 2I46_B.
Probab=21.14 E-value=1.9e+02 Score=16.91 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=21.4
Q ss_pred EEEEEEEEECCCCCCcCCcEEEeCCCCEEEEEEe
Q psy16256 26 YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 26 ~r~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~P 59 (74)
...|.|-+..+...+...+.|.+ .||.-.|.+=
T Consensus 25 ~~q~~ri~~~~~~~~~~~i~a~l-sDs~~~I~a~ 57 (106)
T PF10341_consen 25 PPQLLRILKFAKSTSDGAITALL-SDSTHQILAI 57 (106)
T ss_dssp EEEEEEEEE-S---TTS-EEEEE-E-SS-EEEEE
T ss_pred CCeEEEEEEEecCCCCCcEEEEE-EcCCeEEEEE
Confidence 45788888888999999999999 6998888764
No 124
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3.2.2.21 from EC. AlkA (3-methyladenine-DNA glycosylase II) is a base excision repair glycosylase from Escherichia coli. It removes a variety of alkylated bases from DNA, primarily by removing alkylation damage from duplex and single stranded DNA. AlkA flips a 1-azaribose abasic nucleotide out of DNA. This produces a 66 degrees bend in the DNA and a marked widening of the minor groove []. This groove is a large hydrophobic cleft, which is unusually rich in aromatic residues. AlkA recognises electron-deficient methylated bases through pi-donor/acceptor interactions involving the electron-rich aromatic cleft. AlkA is similar in fold and active site location to the bifunctional glycosylase/lyase endonuclease III. This suggests that the two may use similar mechanisms for base excision []. The structural analysis of the AlkA and AlkA-hypoxanthine structures indicate that free hypoxanthine binding in the active site may inhibit glycosylase activity [].; GO: 0003905 alkylbase DNA N-glycosylase activity; PDB: 1MPG_B 3CWS_D 3CW7_C 3CWA_B 3D4V_A 3CWT_C 3CWU_B 3OGD_A 3CVS_C 1PVS_A ....
Probab=21.12 E-value=1.4e+02 Score=18.22 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEEEEECCCCCCcCCcEEEeCC-CCEEEEEEeC
Q psy16256 27 REYNREFLLPKGTNPESIKSSLSK-DGVLTVEAPL 60 (74)
Q Consensus 27 r~f~R~~~LP~~vd~~~i~A~l~~-dGvL~I~~Pk 60 (74)
..|.|+|.|+.. ..-+++++.. .+.|.|++.-
T Consensus 33 ~~Y~Rt~~l~~~--~g~v~v~~~~~~~~l~v~~~~ 65 (116)
T PF06029_consen 33 GSYRRTFRLGGG--PGWVSVRHDPEKNHLRVTLSL 65 (116)
T ss_dssp SEEEEEEEETTE--EEEEEEEEETTTTEEEEEE-G
T ss_pred CeEEEEEEeCCe--EEEEEEEEcCCCCEEEEEEEc
Confidence 379999999875 3456666633 3677777643
No 125
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=21.06 E-value=1.1e+02 Score=20.49 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=16.4
Q ss_pred EEEECCCCCCcCCcEEEeCCCCEEEEEEeCCC
Q psy16256 31 REFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62 (74)
Q Consensus 31 R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk~~ 62 (74)
+.+.+|++| ++++ ++..++|+-|+-.
T Consensus 7 ~pI~IP~~V-----~V~i-~~~~ItVkGpkG~ 32 (189)
T PTZ00179 7 DTITIPEDV-----TVSV-KDRIVTVKGKRGT 32 (189)
T ss_pred ccEeCCCCC-----EEEE-eCCEEEEECCCcE
Confidence 456777765 5566 5666777766643
No 126
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=20.82 E-value=32 Score=22.04 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.5
Q ss_pred EEEEEEEECCCCCCcCCcEEE---eCCCCEEEEEEeCC
Q psy16256 27 REYNREFLLPKGTNPESIKSS---LSKDGVLTVEAPLP 61 (74)
Q Consensus 27 r~f~R~~~LP~~vd~~~i~A~---l~~dGvL~I~~Pk~ 61 (74)
+.+.=++.+|.++|.+.=.+. +..|-+|++.+||.
T Consensus 131 ~~~viAiDiPSGl~~dtG~~~~~~v~Ad~Tvt~g~~K~ 168 (169)
T PF03853_consen 131 RAPVIAIDIPSGLDADTGEVDGPAVRADYTVTFGAPKP 168 (169)
T ss_dssp CSEEEEESS-TTCBTTTB-BSSSS---SEEEEESSEEG
T ss_pred CCcEEEecCCCCccCCCCCcCCCEEEcceeeecCCcCC
Confidence 346778999999998744332 33556788777764
No 127
>PF08001 CMV_US: CMV US; InterPro: IPR012536 This is a family of unique short (US) cytoplasmic glycoproteins which are expressed in cytomegalovirus [].; GO: 0030683 evasion by virus of host immune response, 0030176 integral to endoplasmic reticulum membrane
Probab=20.77 E-value=97 Score=21.54 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=22.9
Q ss_pred EEEEEECCC-----CCCcCCcEEEeCCCCEEEEEEe
Q psy16256 29 YNREFLLPK-----GTNPESIKSSLSKDGVLTVEAP 59 (74)
Q Consensus 29 f~R~~~LP~-----~vd~~~i~A~l~~dGvL~I~~P 59 (74)
-.+.+.||. .|+..+.+|.+ .+|.|..+.=
T Consensus 47 ~~~~~~~~p~Ps~~~V~~~~~eC~I-~gG~l~A~W~ 81 (231)
T PF08001_consen 47 LSKKVPLPPYPSNYRVESSESECVI-RGGKLEATWT 81 (231)
T ss_pred hhcccCCCCCCCCceeeecccEEEE-ECCEEEEEEE
Confidence 445666754 68888899999 7999988753
No 128
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=20.68 E-value=1.4e+02 Score=18.77 Aligned_cols=16 Identities=6% Similarity=-0.066 Sum_probs=13.8
Q ss_pred eEEEECCEEEEEEEEE
Q psy16256 2 LFGSPNDFPIVHAKHE 17 (74)
Q Consensus 2 ~~~v~~~~L~I~g~~~ 17 (74)
.|.+++|.++++|.-.
T Consensus 46 ~V~v~~G~v~l~G~v~ 61 (147)
T PRK11198 46 NVQVEDGKATVSGDAA 61 (147)
T ss_pred eEEEeCCEEEEEEEeC
Confidence 5889999999999754
No 129
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=20.39 E-value=1.5e+02 Score=17.91 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEEEECCCCCCcCCcEEEeCCCCEEEEEEeC
Q psy16256 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 28 ~f~R~~~LP~~vd~~~i~A~l~~dGvL~I~~Pk 60 (74)
.|.=.|.+|+. .+.....+ .||+|+..--.
T Consensus 33 ~~~in~~~~D~--~e~~~l~l-~NgvL~~~~~~ 62 (125)
T PF14864_consen 33 DFTINFIFTDT--GEQYTLEL-RNGVLNYRKGS 62 (125)
T ss_dssp -EEEEEEETTT--TEEEEEEE-ETTEEEEEET-
T ss_pred cEEEEEEEcCC--CCeEEEEE-ECCEEEeecCC
Confidence 45566777754 46788899 89999997533
No 130
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=20.22 E-value=1.8e+02 Score=22.54 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=16.6
Q ss_pred CcCCcEEEeCCCCEEEEEEeC
Q psy16256 40 NPESIKSSLSKDGVLTVEAPL 60 (74)
Q Consensus 40 d~~~i~A~l~~dGvL~I~~Pk 60 (74)
..=.|+-.++.||+|+|++--
T Consensus 467 ~~i~v~f~~d~~Gil~V~a~~ 487 (616)
T PRK05183 467 ARIRVTFQVDADGLLSVTAME 487 (616)
T ss_pred ccEEEEEEECCCCeEEEEEEE
Confidence 334678889999999999853
Done!