RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16256
(74 letters)
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 76.4 bits (189), Expect = 2e-20
Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 11 IVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
+V KHEE+ D V RE+ R + LP+G +P+S+ SSLS DGVLT+EAP
Sbjct: 33 VVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts
with a large number of different proteins. It is found
in many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation
of actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked
to several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated
state is a high molecular weight aggregated form
(100-800kDa) composed of up to 24 subunits, which forms
as a result of multiple interactions within the ACD,
and is required for chaperone function and resistance
to oxidative stress. Upon phosphorylation these large
aggregates rapidly disassociate to smaller oligomers
and chaperone activity is modified. High constitutive
levels of Hsp27 have been detected in various cancer
cells, in particular those of carcinoma origin.
Over-expression of Hsp27 has a protective effect
against various diseases-processes, including
Huntington's disease. Mutations in Hsp27 have been
associated with a form of distal hereditary motor
neuropathy type II and Charcot-Marie-Tooth disease type
2.
Length = 86
Score = 56.0 bits (135), Expect = 2e-12
Identities = 25/50 (50%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
+ KHEEK D V R + R++ LP G +P ++ SSLS DG+LTVEAP+
Sbjct: 37 ITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI 86
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's
functions include effects on the apoptotic pathway and
on metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5
is protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract
this effect. It is an autoantigen in the pathogenesis
of various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related
myopathy. Mutations in HspB4 have been associated with
Autosomal Dominant Congenital Cataract (ADCC). HspB6
(Hsp20) is ubiquitous and is involved in diverse
functions including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of
apoptosis. It interacts with the universal scaffolding
and adaptor protein 14-3-3, and also with the
proapoptotic protein Bax.
Length = 83
Score = 55.5 bits (134), Expect = 3e-12
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 8 DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
DF +H KHEE+ D + RE++R + LP G +P +I SSLS DGVLT+ P
Sbjct: 30 DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 56.1 bits (136), Expect = 3e-12
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 7 NDFPIVHAKHE-EKSDSKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
++ +V KHE E+ D + YR ++R+F+LP+ +P+ +K+SL KDGVLTV P
Sbjct: 29 DNRVLVKGKHEKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASL-KDGVLTVTVPK 87
Query: 61 PALGAP-EKLIPI 72
+ I I
Sbjct: 88 LEPPEKKPRRIQI 100
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps
are generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 51.0 bits (123), Expect = 3e-10
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 11 IVHAKHEEKSDSKS-------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
+ + EE+ + + Y ++R F LP+ +P+ IK+SL ++GVLT+ P
Sbjct: 33 TISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTITLP 87
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain
found in the small heat shock protein (sHsp)
alphaB-crystallin (HspB5, 20kDa). sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
Alpha crystallin, an abundant protein in the mammalian
lens, is a large (700 kDa) heteropolymer composed of
HspB4 and HspB5, generally in a molar ratio of
HspB4:HspB5 of 3:1. HspB4 does not belong to this
group. HspB5 shows increased synthesis in response to
stress. HspB5 is also expressed constitutively in other
tissues including brain, heart, and type I and type IIa
skeletal muscle fibers, and in several cancers
including gliomas, renal cell carcinomas, basal-like
and metaplastic breast carcinomas, and head and neck
cancer. Its functions include effects on the apoptotic
pathway and on metastasis. Phosphorylation of HspB5
reduces its oligomerization and anti-apoptotic
activities. HspB5 is protective in demyelinating
disease such as multiple sclerosis (MS), being a
negative regulator of inflammation. In early active MS
lesions it is the most abundant gene transcript and an
autoantigen, the immune response against it would
disrupt its function and worsen inflammation and
demyelination. Given as therapy for ongoing
demyelinating disease it may counteract this effect.
It is an autoantigen in the pathogenesis of various
other inflammatory disorders including Lens-associated
uveitis (LAU), and Behcet's disease. Mutations in HspB5
have been associated with diseases including dominant
cataract and desmin-related myopathy.
Length = 84
Score = 50.4 bits (120), Expect = 4e-10
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 8 DFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
DF +H KHEE+ D + RE+ R++ +P +P +I SSLS DGVLTV P
Sbjct: 30 DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of
human butyrate-induced transcript 1 (hB-ind1), NUD
(nuclear distribution) C, Melusin, and NAD(P)H
cytochrome b5 (NCB5) oxidoreductase (OR).
Length = 80
Score = 49.9 bits (120), Expect = 6e-10
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 11 IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
+ K EE+ + + Y E+ R F LP+ +PE K+SL ++GVL + P
Sbjct: 32 TISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLP 79
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain
found in the small heat shock protein (sHsp)
alphaA-crystallin (HspB4, 20kDa). sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
Alpha crystallin, an abundant protein in the mammalian
lens, is a large (700 kDa) heteropolymer composed of
HspB4 and HspB5, generally in a molar ratio of
HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are
found in tissues other than the lens. HspB5 does not
belong to this group. Mutations inHspB4 have been
associated with Autosomal Dominant Congenital Cataract
(ADCC). The chaperone-like functions of HspB4 are
considered important for maintaining lens transparency
and preventing cataract.
Length = 86
Score = 45.0 bits (106), Expect = 5e-08
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 7 NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
+D+ +H KH E+ D + RE++R + LP + +I SLS DG+LT P
Sbjct: 32 DDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85
>gnl|CDD|107231 cd06476, ACD_HspB2_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB2/heat
shock 27kDa protein 2 and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. HspB2 is preferentially and constitutively
expressed in skeletal muscle and heart. HspB2 shows
homooligomeric activity and forms aggregates in muscle
cytosol. Although its expression is not induced by heat
shock, it redistributes to the insoluble fraction in
response to heat shock. In the mouse heart, HspB2 plays
a role in maintaining energetic balance, by protecting
cardiac energetics during ischemia/reperfusion, and
allowing for increased work during acute inotropic
challenge. hHspB2 [previously also known as myotonic
dystrophy protein kinase (DMPK) binding protein (MKBP)]
is selectively up-regulated in skeletal muscles from
myotonic dystrophy patients. The ACD of hHspB2 binds
the DMPK kinase domain. In vitro, hHspB2 enhances the
kinase activity of DMPK and confers thermoresistance.
The hHspB2 gene lies less than 1kb from the 5 prime end
of the related alphaB (HspB4)-crystallin gene, with the
opposite transcription direction. These two genes may
share regulatory elements for their expression.
Length = 83
Score = 43.8 bits (103), Expect = 1e-07
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
V A+H ++ D V RE+ R ++LP +P +++SLS DG+L ++AP
Sbjct: 34 VSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 43.2 bits (102), Expect = 3e-07
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 11 IVHAKHEEKSDSKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
+V K E+K++ + Y+E+ RE LP+ +PE++ SLS G L + AP
Sbjct: 33 VVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAP 86
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 36.2 bits (84), Expect = 3e-04
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 25 VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
Y E+ R F LP+ +PE IK+ K+G+LTV P
Sbjct: 98 AYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLP 131
>gnl|CDD|107235 cd06480, ACD_HspB8_like, Alpha-crystallin domain (ACD) found in
mammalian 21.6 KDa small heat shock protein (sHsp)
HspB8, also denoted as Hsp22 in humans, and similar
proteins. sHsps are molecular chaperones that suppress
protein aggregation and protect against cell stress,
and are generally active as large oligomers consisting
of multiple subunits. A chaperone complex formed of
HspB8 and Bag3 stimulates degradation of protein
complexes by macroautophagy. HspB8 also forms complexes
with Hsp27 (HspB1), MKBP (HspB2), HspB3,
alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp
(HspB7). These latter interactions may depend on
phosphorylation of the respective partner sHsp. HspB8
may participate in the regulation of cell
proliferation, cardiac hypertrophy, apoptosis, and
carcinogenesis. Point mutations in HspB8 have been
correlated with the development of several congenital
neurological diseases, including Charcot Marie tooth
disease and distal motor neuropathy type II.
Length = 91
Score = 33.0 bits (75), Expect = 0.003
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 12 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 60
V KHEE+ V + + ++ LP +P ++ +SLS +G+L +EAP
Sbjct: 42 VSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
HspB7 is a 25-kDa protein, preferentially expressed in
heart and skeletal muscle. It binds the cytoskeleton
protein alpha-filamin (also known as actin-binding
protein 280). The expression of HspB7 is increased
during rat muscle aging. Its expression is also
modulated in obesity implicating this protein in this
and related metabolic disorders. As the human gene
encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it
is a positional candidate for several dystrophies and
myopathies.
Length = 81
Score = 32.6 bits (74), Expect = 0.003
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 16 HEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 58
H EK S +V + + LP+ +P S+ SSL +DG LT++A
Sbjct: 36 HAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKA 79
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
ScHsp26 is temperature-regulated, it switches from an
inactive to a chaperone-active form upon elevation in
temperature. It associates into large 24-mers storage
forms which upon heat shock disassociate into dimers.
These dimers initiate the interaction with non-native
substrate proteins and re-assemble into large globular
assemblies having one monomer of substrate bound per
dimer. This group also contains Arabidopsis thaliana
(Ath) Hsp15.7, a peroxisomal matrix protein which can
complement the morphological phenotype of S. cerevisiae
mutants deficient in Hsps26. AthHsp15.7 is minimally
expressed under normal conditions and is strongly
induced by heat and oxidative stress. Also belonging to
this group is wheat HSP16.9 which differs in quaternary
structure from the shell-type particles of ScHsp26, it
assembles as a dodecameric double disc, with each disc
organized as a trimer of dimers.
Length = 92
Score = 30.0 bits (68), Expect = 0.034
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 28 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
+ R F LP+ + + +K+ L +GVLTV P
Sbjct: 61 RFVRRFRLPENADADEVKAFLE-NGVLTVTVP 91
>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in
mammalian HspB3, also known as heat-shock protein
27-like protein (HSPL27, 17-kDa) and similar proteins.
sHsps are molecular chaperones that suppress protein
aggregation and protect against cell stress, and are
generally active as large oligomers consisting of
multiple subunits. HspB3 is expressed in adult skeletal
muscle, smooth muscle, and heart, and in several other
fetal tissues. In muscle cells HspB3 forms an
oligomeric 150 kDa complex with myotonic dystrophy
protein kinase-binding protein (MKBP/ HspB2), this
complex may comprise one of two independent muscle-cell
specific chaperone systems. The expression of HspB3 is
induced during muscle differentiation controlled by the
myogenic factor MyoD. HspB3 may also interact with
Hsp22 (HspB8).
Length = 83
Score = 29.0 bits (65), Expect = 0.079
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 11 IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVE 57
++ +H + D + R + R++ LP G + + + L DG+L VE
Sbjct: 33 LIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80
>gnl|CDD|107237 cd06482, ACD_HspB10, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB10, also
known as sperm outer dense fiber protein (ODFP), and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB10
occurs exclusively in the axoneme of sperm cells and
may have a cytoskeletal role.
Length = 87
Score = 28.3 bits (63), Expect = 0.17
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 12 VHAKHEEKSDS----KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
V A+ E + D K Y +EF LP G + + + S V+ +E P
Sbjct: 35 VSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETP 86
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 25.6 bits (56), Expect = 2.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 35 LPKGTNPESIKSSLSKDGVLTV--EAPLPALG 64
LP GT IK+++ G+ TV EA P L
Sbjct: 25 LPLGTVIAQIKNTMKNKGLHTVCEEASCPNLT 56
>gnl|CDD|225337 COG2716, GcvR, Glycine cleavage system regulatory protein [Amino
acid transport and metabolism].
Length = 176
Score = 25.4 bits (56), Expect = 2.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 43 SIKSSLSKDGVLTVEAPLPALGAPEKLI 70
+ S S D V +EA LP LGA L+
Sbjct: 48 IMLISGSWDAVTLLEATLPLLGAELDLL 75
>gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This
domain is found to the N-terminus of pfam03473. The
function of this domain is unknown, however it is
predicted to adopt a beta barrel fold.
Length = 118
Score = 25.0 bits (55), Expect = 3.7
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 44 IKSSLSKDGVLTVEAPLPALGAPEKLIPIA 73
I+++L +DG LT+ AP G P +P+A
Sbjct: 57 IRTTLDEDGGLTLTAP----GMPPLSVPLA 82
>gnl|CDD|205821 pfam13644, DKNYY, DKNYY family. This family represents a group of
proteins found enriched in fusobacteria. These proteins
contain many repeats of a DKNXXYY motif. The repeats are
spaced at about 35 amino acid residues intervals. These
proteins are likely to be associated with the membrane.
The specific function of these proteins is unknown.
Length = 163
Score = 24.6 bits (54), Expect = 5.1
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 5/37 (13%)
Query: 21 DSKSVYR-EYNREFLLPKGTNPESIKS----SLSKDG 52
D ++Y E + K + ++ K +KD
Sbjct: 91 DKNNIYYNEGKGKLKKIKNVDKKTFKILDDGYFAKDK 127
>gnl|CDD|235308 PRK04570, PRK04570, cell division protein ZipA; Provisional.
Length = 243
Score = 24.5 bits (53), Expect = 5.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 54 LTVEAPLPALGAPEKLIP 71
LT+ AP+ AL A EK++P
Sbjct: 175 LTLPAPMTALDAWEKMLP 192
>gnl|CDD|236436 PRK09263, PRK09263, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 711
Score = 24.5 bits (54), Expect = 6.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 4 GSPNDFPIVHAKHEE 18
G+P+ P H + EE
Sbjct: 684 GNPDARPFNHGRQEE 698
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.133 0.380
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,738,725
Number of extensions: 269418
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 24
Length of query: 74
Length of database: 10,937,602
Length adjustment: 44
Effective length of query: 30
Effective length of database: 8,986,026
Effective search space: 269580780
Effective search space used: 269580780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)