RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16256
(74 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 80.0 bits (197), Expect = 6e-21
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 11 IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKL 69
VH KHEE+ D + RE++R++ +P +P +I SSLS DGVLTV P + PE+
Sbjct: 99 EVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPERT 158
Query: 70 IPIAH 74
IPI
Sbjct: 159 IPITR 163
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 72.2 bits (177), Expect = 9e-19
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 7 NDFPIVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGA 65
DF +H KH E+ D + RE++R + LP + ++ SLS DG+LT P G
Sbjct: 34 EDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGV 93
Query: 66 P----EKLIPIA 73
E+ IP++
Sbjct: 94 DAGHSERAIPVS 105
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 71.7 bits (176), Expect = 9e-19
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 11 IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 68
VH KHEE+ D + RE++R++ +P +P +I SS+S DGVLTV P + PE+
Sbjct: 32 EVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 69.3 bits (170), Expect = 9e-18
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 11 IVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
+ KH + D + R + R++ LP G +P + SSLS +G LTVEAP+P
Sbjct: 33 EITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 69.4 bits (170), Expect = 1e-17
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 11 IVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKL 69
VHA+HEE+ D + RE++R + LP G +P ++ S+LS +GVL+++A + A
Sbjct: 37 EVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPS 96
Query: 70 IPIA 73
P A
Sbjct: 97 PPAA 100
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 67.9 bits (165), Expect = 1e-15
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 7 NDFPIVHAKHEEKSDSK----SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
+ VH ++ ++ S +RE+ + F+ P+ + ++ + DG++ VEAPL
Sbjct: 256 GNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMVVEAPLF 313
Score = 67.2 bits (163), Expect = 3e-15
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 11 IVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 62
+V A+ ++ R LP + I+++++ D VL +EAP+
Sbjct: 138 VVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNE 189
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 15 KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
K E ++++ R ++R F LP + + I ++ ++GVL + P
Sbjct: 46 KSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG-RNGVLEIRIP 95
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 38.5 bits (90), Expect = 3e-05
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 15 KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE- 67
E++ + +R ++ R F L + E +K+ L ++GVLTV P + PE
Sbjct: 86 TKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEV 144
Query: 68 KLIPIA 73
K I I+
Sbjct: 145 KAIQIS 150
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 37.0 bits (86), Expect = 1e-04
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 15 KHEEKSDSKSVYR-------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE 67
++S+ + E R LP E+ + ++GVL+V P + +
Sbjct: 98 SPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAE-SSIK 155
Query: 68 KLIPI 72
K I I
Sbjct: 156 KGINI 160
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 35.3 bits (82), Expect = 3e-04
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 15 KHEEKSDSKSVYREYN---REFLLPKGTNPES-IKSSLSKDGVLTVEAP 59
+ + K + + + LP ++ I ++GVLT+ P
Sbjct: 66 REITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY-ENGVLTIRIP 113
Score = 23.7 bits (52), Expect = 5.5
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 35 LPKGTNPESIKSSLSKDGVLTVEA 58
L G N E IK+ +S L +EA
Sbjct: 42 LA-GFNKEKIKARVSGQNELIIEA 64
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA
damage, DNA recombination, DNA repair, hydrolase,
magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Length = 311
Score = 23.9 bits (50), Expect = 6.3
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 30 NREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 61
E + + L ++ V L
Sbjct: 26 LCETTGGSSVRKQELVKELQRNSVTFDVRKLN 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.133 0.380
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,059,499
Number of extensions: 46546
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 15
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.5 bits)