RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16256
         (74 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 34.4 bits (78), Expect = 3e-04
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 7   NDFPIVHAKHEEKSDSKSVY-------REYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 59
           N   +   + +EK D    +        ++ R F L +    E +K+ L ++GVLTV  P
Sbjct: 76  NVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVP 134

Query: 60  LPALGAPE-KLIPIA 73
              +  PE K I I+
Sbjct: 135 KAEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 32.3 bits (73), Expect = 0.002
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 26  YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 72
             E  R   LP     E+  +   ++GVL+V  P        K I I
Sbjct: 70  EEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAESSIK-KGINI 114


>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
          pneumoniae [TaxId: 573]}
          Length = 179

 Score = 24.8 bits (54), Expect = 1.1
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 24 SVYREYNREFLLPKGTNPESIKSSLSKDGVL----TVEAPLPALGAPEKLI 70
          +++   + +  L   TN E I+  L+  GV       +  L A    E +I
Sbjct: 4  TIFSVKDPQNSLWHSTNAEEIQQQLNAKGVRFERWQADRDLGAAPTAETVI 54


>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 52

 Score = 23.0 bits (50), Expect = 1.9
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 19 KSDSKSVYREYNREFLLPKG----TNPESIK 45
          K + K+V   Y   FL  +G      P ++K
Sbjct: 15 KGEIKNVADGYANNFLFKQGLAIEATPANLK 45


>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain
          {Escherichia coli [TaxId: 562]}
          Length = 58

 Score = 22.2 bits (48), Expect = 4.0
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 19 KSDSKSVYREYNREFLLPKG----TNPESIK 45
            D  +V   Y R FL+P+G       ++I+
Sbjct: 15 LGDQVNVKAGYARNFLVPQGKAVPATKKNIE 45


>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus
          thermophilus [TaxId: 274]}
          Length = 55

 Score = 22.3 bits (48), Expect = 4.0
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)

Query: 19 KSDSKSVYREYNREFLLPKG----TNPESIK 45
                V   Y R +LLP+G        ++K
Sbjct: 15 VGQVVDVKPGYARNYLLPRGLAVLATESNLK 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0738    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 258,476
Number of extensions: 9093
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 8
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (21.9 bits)