BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16257
(346 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AXY7|PR38B_RAT Pre-mRNA-splicing factor 38B OS=Rattus norvegicus GN=Prpf38b PE=2
SV=1
Length = 542
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 154/195 (78%), Positives = 177/195 (90%)
Query: 22 KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 42 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 101
Query: 82 GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 102 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 161
Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW TLFPRI
Sbjct: 162 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
Query: 202 PVPIQQKLEKQMSAK 216
PVP+Q+ +++Q+ +
Sbjct: 222 PVPVQKNIDQQIKTR 236
>sp|Q80SY5|PR38B_MOUSE Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1
Length = 542
Score = 329 bits (844), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 154/195 (78%), Positives = 177/195 (90%)
Query: 22 KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 43 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 102
Query: 82 GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 103 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 162
Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW TLFPRI
Sbjct: 163 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 222
Query: 202 PVPIQQKLEKQMSAK 216
PVP+Q+ +++Q+ +
Sbjct: 223 PVPVQKNIDQQIKTR 237
>sp|Q5VTL8|PR38B_HUMAN Pre-mRNA-splicing factor 38B OS=Homo sapiens GN=PRPF38B PE=1 SV=1
Length = 546
Score = 328 bits (842), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 154/195 (78%), Positives = 177/195 (90%)
Query: 22 KKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81
K+ NVLPLWGNE+TMN+NP+ILTNI SS YFKV LYELKTYHEV+DE+Y+KV H+EPWEK
Sbjct: 42 KQGNVLPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEK 101
Query: 82 GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLG 141
GSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI HTDSPYIR LG
Sbjct: 102 GSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALG 161
Query: 142 FMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRI 201
FMYIRYTQPP DLWDW+E +L+DEE++DVKAGGG VMTIG MLRSFLTKLEW TLFPRI
Sbjct: 162 FMYIRYTQPPTDLWDWFESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRI 221
Query: 202 PVPIQQKLEKQMSAK 216
PVP+Q+ +++Q+ +
Sbjct: 222 PVPVQKNIDQQIKTR 236
>sp|Q6P7Y3|PR38B_DANRE Pre-mRNA-splicing factor 38B OS=Danio rerio GN=prpf38b PE=2 SV=1
Length = 501
Score = 318 bits (815), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 151/203 (74%), Positives = 175/203 (86%)
Query: 14 ATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKV 73
A G K N LPLWGNE+TMN+NP+ILTN+ SS YFKV LYELKTYHEV+DE+Y+KV
Sbjct: 12 AVSKPTGGKHGNNLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTYHEVVDEIYFKV 71
Query: 74 QHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTD 133
H+EPWEKGSRKT+GQTGMCGGVRGVG GGIVSTAFCLLYKLFTLK+TRKQ+ GLI H+D
Sbjct: 72 NHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHSD 131
Query: 134 SPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEW 193
SP IR LGFMYIRYTQPP DL DWY+ +L+DEEE+DVKAGGG VMT+G MLRSFLTKLEW
Sbjct: 132 SPDIRALGFMYIRYTQPPPDLVDWYDEFLDDEEELDVKAGGGCVMTVGEMLRSFLTKLEW 191
Query: 194 HGTLFPRIPVPIQQKLEKQMSAK 216
TLFPRIPVP+Q+ +++ M ++
Sbjct: 192 FSTLFPRIPVPVQKAIDQHMKSR 214
>sp|Q4FZQ6|PR38A_XENLA Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1
Length = 312
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRALGALYMRLTGTATDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D +V V+ G ++M + + L + + PR+
Sbjct: 117 YKYLEPLYNDYRKVKVQNRDGEFELMHVDEFIDQLLHEERVCDVILPRL 165
>sp|Q28H87|PR38A_XENTR Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2
SV=1
Length = 312
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRTLGALYMRLTGTATDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D +V V+ G ++M + + L + + PR+
Sbjct: 117 YKYLEPLYNDYRKVKVQNRNGEFELMHVDEFIDQLLHEERVCDVILPRL 165
>sp|Q6DHU4|PR38A_DANRE Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1
Length = 313
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G + T F CL K+ ++ + + I + D Y+R LG MY+R T D
Sbjct: 57 VGGVYGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D ++ + G ++M + + L + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRL 165
>sp|Q5RDD2|PR38A_PONAB Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1
Length = 312
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D ++ + G ++M + + L + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165
>sp|Q8HXH6|PR38A_MACFA Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2
SV=1
Length = 312
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D ++ + G ++M + + L + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165
>sp|Q8NAV1|PR38A_HUMAN Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1
Length = 312
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D ++ + G ++M + + L + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165
>sp|Q0P5I6|PR38A_BOVIN Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1
Length = 312
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D ++ + G ++M + + L + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRL 165
>sp|Q4FK66|PR38A_MOUSE Pre-mRNA-splicing factor 38A OS=Mus musculus GN=Prpf38a PE=1 SV=1
Length = 312
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 96 VRGVGAGGIVSTAF-CLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADL 154
V GV G I T F CL K+ ++ + + I + D Y+R LG +Y+R T D
Sbjct: 57 VGGVYGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDC 116
Query: 155 WDWYEPYLEDEEEVDVKAGGGQ--VMTIGNMLRSFLTKLEWHGTLFPRI 201
+ + EP D ++ + G+ +M + + L + PR+
Sbjct: 117 YKYLEPLYNDYRKIKSQNRNGEFVLMHVDEFIYELLHSERVCDIILPRL 165
>sp|Q54TI3|Y4636_DICDI Putative uncharacterized protein DDB_G0281733 OS=Dictyostelium
discoideum GN=DDB_G0281733 PE=4 SV=2
Length = 831
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 286 YKRSYDSKDDRYKSSSRYASPERKKYRD---DSRDTYRDRDKYSSSSKYDKYSKDDRYSS 342
++ S DS+D R SR E + +RD DSRD YRD+D SS D ++DD+Y
Sbjct: 695 HRESRDSRDHRESRDSR-EYRESRDHRDHSRDSRDQYRDKDHRDSSDGRDHRNRDDKYQI 753
Query: 343 SKDD 346
K D
Sbjct: 754 DKRD 757
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,168,518
Number of Sequences: 539616
Number of extensions: 6529905
Number of successful extensions: 19026
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 355
Number of HSP's that attempted gapping in prelim test: 16924
Number of HSP's gapped (non-prelim): 1841
length of query: 346
length of database: 191,569,459
effective HSP length: 118
effective length of query: 228
effective length of database: 127,894,771
effective search space: 29160007788
effective search space used: 29160007788
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)