Query psy16257
Match_columns 346
No_of_seqs 240 out of 373
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 16:47:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2888|consensus 100.0 5.9E-78 1.3E-82 579.9 13.5 206 15-220 35-240 (453)
2 PF03371 PRP38: PRP38 family; 100.0 2.2E-62 4.8E-67 440.0 11.9 171 24-213 1-172 (172)
3 KOG2889|consensus 100.0 7.1E-48 1.5E-52 345.2 5.8 177 25-222 8-186 (204)
4 KOG0835|consensus 96.8 0.0045 9.8E-08 61.6 8.0 42 104-145 140-192 (367)
5 KOG4676|consensus 96.0 0.0045 9.7E-08 62.9 2.7 13 251-263 292-304 (479)
6 KOG0151|consensus 93.5 0.06 1.3E-06 58.4 3.4 15 177-191 735-749 (877)
7 KOG0147|consensus 93.3 0.16 3.5E-06 53.5 6.0 12 180-191 5-16 (549)
8 KOG0670|consensus 93.0 0.12 2.5E-06 55.2 4.4 17 266-282 137-153 (752)
9 KOG0113|consensus 91.2 0.51 1.1E-05 46.9 6.3 14 133-149 98-111 (335)
10 KOG2888|consensus 91.2 0.17 3.7E-06 50.9 3.0 12 128-139 156-167 (453)
11 KOG0151|consensus 91.0 0.17 3.6E-06 55.1 3.0 11 36-46 490-500 (877)
12 KOG4246|consensus 89.5 0.4 8.7E-06 53.1 4.3 16 113-128 116-131 (1194)
13 KOG4368|consensus 88.5 0.8 1.7E-05 49.1 5.5 11 186-196 510-520 (757)
14 KOG0113|consensus 87.5 1.2 2.5E-05 44.4 5.7 33 107-139 99-133 (335)
15 KOG0835|consensus 87.3 1.5 3.4E-05 44.1 6.5 26 140-165 144-171 (367)
16 KOG0796|consensus 81.8 0.67 1.5E-05 46.2 1.2 7 153-159 187-193 (319)
17 KOG0796|consensus 81.1 0.8 1.7E-05 45.7 1.5 15 55-70 78-92 (319)
18 KOG4246|consensus 79.4 1.9 4.1E-05 48.1 3.7 8 198-205 192-199 (1194)
19 KOG2548|consensus 69.8 2 4.2E-05 45.8 0.9 20 187-206 336-355 (653)
20 KOG2548|consensus 66.9 3.2 6.8E-05 44.3 1.7 7 108-114 228-234 (653)
21 KOG4207|consensus 58.2 40 0.00086 32.5 7.1 19 230-248 106-124 (256)
22 PF11671 Apis_Csd: Complementa 56.7 2 4.2E-05 38.2 -1.6 12 281-292 26-37 (146)
23 KOG1847|consensus 56.5 9.2 0.0002 41.9 2.9 22 243-264 703-724 (878)
24 KOG1847|consensus 52.3 17 0.00036 40.0 4.0 20 57-76 363-382 (878)
25 KOG1567|consensus 51.5 11 0.00025 37.5 2.5 29 103-131 222-250 (344)
26 PF09875 DUF2102: Uncharacteri 44.3 15 0.00033 31.3 1.8 62 37-98 10-79 (104)
27 KOG1902|consensus 43.9 12 0.00026 38.3 1.3 56 44-104 101-166 (441)
28 KOG1902|consensus 40.4 15 0.00033 37.5 1.5 13 224-236 340-352 (441)
29 KOG0132|consensus 38.0 53 0.0011 36.9 5.1 14 104-117 160-173 (894)
30 KOG1049|consensus 37.1 20 0.00043 38.4 1.8 71 267-337 402-494 (538)
31 PF05555 DUF762: Coxiella burn 36.8 31 0.00067 33.1 2.8 72 26-124 49-125 (248)
32 PF07420 DUF1509: Protein of u 32.1 37 0.00079 34.2 2.6 24 134-157 106-129 (377)
33 KOG0107|consensus 29.1 1E+02 0.0022 29.1 4.7 9 188-196 67-75 (195)
34 KOG1874|consensus 28.6 65 0.0014 38.0 4.1 13 107-119 947-959 (1477)
35 PF06762 LMF1: Lipase maturati 28.5 42 0.00091 34.4 2.4 41 105-149 312-359 (384)
36 KOG2146|consensus 26.7 6.9E+02 0.015 25.4 10.4 56 154-214 68-131 (354)
37 KOG4849|consensus 26.6 6.9 0.00015 40.1 -3.5 7 29-35 149-155 (498)
38 KOG0132|consensus 24.8 1.2E+02 0.0025 34.3 5.1 16 4-19 5-20 (894)
39 TIGR03272 methan_mark_6 putati 21.8 40 0.00087 30.0 0.8 61 38-98 10-78 (132)
No 1
>KOG2888|consensus
Probab=100.00 E-value=5.9e-78 Score=579.91 Aligned_cols=206 Identities=74% Similarity=1.315 Sum_probs=201.7
Q ss_pred cCCCCCCCCCCeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccC
Q psy16257 15 TGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCG 94 (346)
Q Consensus 15 ~~~~~~~~~~n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~G 94 (346)
++...++|+.|+||+|||..|||||+||..||++|.|||++||+|+||++||||||++|+|||||+.||++|+||+||||
T Consensus 35 ~k~~~~gkq~ntlp~wGne~tmnLn~lil~NIlsS~YfKv~LyelktyhevideIyyqVkHvEPWekGsrkt~gqtgmCg 114 (453)
T KOG2888|consen 35 EKGTYKGKQSNTLPVWGNEVTMNLNTLILENILSSYYFKVNLYELKTYHEVIDEIYYQVKHVEPWEKGSRKTQGQTGMCG 114 (453)
T ss_pred cccccccccccccccccchhhhhHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHhccCchhcCCccccccccccc
Confidence 36667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCcCchhHhHhhhccccCCHHHHHHhhcCCCCCceeeehhhhhhhccCchhHHHhhhhhcccccccccccCC
Q psy16257 95 GVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGG 174 (346)
Q Consensus 95 G~~g~~a~~~PStffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~~p~el~~~lep~l~DyrKl~~~~~~ 174 (346)
||+||||||++||+||||||||+|++|.+||.+||+|.|++|||||||||||||.||.+||.||||||+|.++|.+++++
T Consensus 115 gvRGvgaggivSTAyCLLYklftlklTrKQ~~gllnhtdSpYIRalGFmYiRYtqpp~dLw~WyEpyldDdeeidpkagg 194 (453)
T KOG2888|consen 115 GVRGVGAGGIVSTAYCLLYKLFTLKLTRKQLIGLLNHTDSPYIRALGFMYIRYTQPPADLWDWYEPYLDDDEEIDPKAGG 194 (453)
T ss_pred cccccCcCcchhhHHHHHHHHHHHHhHHHHHHHHhhcCCchhhhhheeeEEeecCChhHHHHHhhhhccchhhcCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeHHHHHHHHHhcccccccCCCCCChhHhHHHhhcccccCCCC
Q psy16257 175 GQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPV 220 (346)
Q Consensus 175 g~~~tmdefvd~LLt~~~~~~~~LPRip~ri~le~~~~L~~r~~p~ 220 (346)
|.+|||+++|..||++..||+|.|||||++|+++|..+|+.+..|.
T Consensus 195 G~vmTiGqmvr~~l~kLdwf~TLFPRIPVPvqkqId~~ie~r~r~t 240 (453)
T KOG2888|consen 195 GDVMTIGQMVRTFLTKLDWFSTLFPRIPVPVQKQIDEKIEERKRPT 240 (453)
T ss_pred CceeeHHHHHHHHHhhhhHHhccCCCCCchHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999988754
No 2
>PF03371 PRP38: PRP38 family; InterPro: IPR005037 Members of this family are related to the pre mRNA splicing factor PRP38 from yeast [], therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation [].
Probab=100.00 E-value=2.2e-62 Score=440.03 Aligned_cols=171 Identities=39% Similarity=0.811 Sum_probs=163.6
Q ss_pred CCeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCC
Q psy16257 24 NNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGG 103 (346)
Q Consensus 24 ~n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~ 103 (346)
+|++++|||++|||||+|+|+||++|.|||++||+++++++|||+|+++|+|||||..|+ +
T Consensus 1 s~~~~~~g~~~~~~i~~ilr~~I~~S~Y~K~~l~~l~~~~~vvd~i~~~v~~ig~~~~g~-------------------~ 61 (172)
T PF03371_consen 1 SNALQIHGNNPTFNIEKILRQNIYNSEYYKENLFGLSTFETVVDEIYEIVRYIGPWYGGN-------------------R 61 (172)
T ss_pred CCCcccCCCCchhcccHHHHHHHhcCHHHHHHhhcCCcHHHHHHHHHHHhhhhhcccCCC-------------------C
Confidence 367899999999999999999999999999999999999999999998899998886433 3
Q ss_pred CcCchhHhHhhhccccCCHHHHHHhhcCCCCCceeeehhhhhhhccCchhHHHhhhhhcccccccccccCCC-ceeeHHH
Q psy16257 104 IVSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGG-QVMTIGN 182 (346)
Q Consensus 104 ~PStffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~~p~el~~~lep~l~DyrKl~~~~~~g-~~~tmde 182 (346)
+||+|||||||||||+||++||.+||+|.+||||||||||||||+++|.++|+||||||+||+||+++..+| +++||||
T Consensus 62 ~Ps~f~CLL~KLl~l~pt~~~v~~~l~~~d~kYiralg~lYlR~~~~p~~~~~~lep~l~D~rkl~~~~~~~~~~~~~de 141 (172)
T PF03371_consen 62 RPSPFFCLLYKLLQLRPTKEQVKELLNNDDFKYIRALGFLYLRYVGPPEELYKWLEPYLNDYRKLRVRNDGGDKITHMDE 141 (172)
T ss_pred CCchHHHHHHHHHhcccCHHHHHHHHcCCCccHHHHHHHHHheeeCCHHHHHHHHHHHhccceeeeeecCCCceeEEHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999988 7999999
Q ss_pred HHHHHHhcccccccCCCCCChhHhHHHhhcc
Q psy16257 183 MLRSFLTKLEWHGTLFPRIPVPIQQKLEKQM 213 (346)
Q Consensus 183 fvd~LLt~~~~~~~~LPRip~ri~le~~~~L 213 (346)
||++||++++||||+|||||++.++|+.++|
T Consensus 142 ~vd~LL~~~~~~~~~LPrlp~r~~~e~~~~~ 172 (172)
T PF03371_consen 142 FVDDLLTKDRYCGTILPRLPKRIVLEIDDEL 172 (172)
T ss_pred HHHHHhhhCcEecccCCCCCchHHHHhhccC
Confidence 9999999999999999999999999999886
No 3
>KOG2889|consensus
Probab=100.00 E-value=7.1e-48 Score=345.22 Aligned_cols=177 Identities=21% Similarity=0.353 Sum_probs=165.5
Q ss_pred CeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCCC
Q psy16257 25 NVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGI 104 (346)
Q Consensus 25 n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~~ 104 (346)
-+..+||+++|+++++|+|++||+|.|||++||+|+ ++.|||.+. ++.|+ ||.+|| +.+
T Consensus 8 ~a~~~retnpq~lv~KiiRsri~~sv~wke~cfgl~-aellvdkam-~l~~l-------------gg~yGg------n~k 66 (204)
T KOG2889|consen 8 IARMTRETNPQFLVEKIIRSRIYDSVYWKEQCFGLT-AELLVDKAM-ELLYL-------------GGKYGG------NSK 66 (204)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHhcchH-HHHHH-------------HHHhcC------CCC
Confidence 356789999999999999999999999999999998 699999996 78888 344554 468
Q ss_pred cCchhHhHhhhccccCCHHHHHHhhcCCCCCceeeehhhhhhhccCchhHHHhhhhhcccccccccccCCC--ceeeHHH
Q psy16257 105 VSTAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVDVKAGGG--QVMTIGN 182 (346)
Q Consensus 105 PStffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~~p~el~~~lep~l~DyrKl~~~~~~g--~~~tmde 182 (346)
|++|+||++|||||+|+++++.++|.+.+|||||||||||+||++...++|++|||+|+|||||++.+.+| ..|||||
T Consensus 67 pt~fKOG~lkmLqiqpeK~i~~efi~~~~fkY~ralgafYlRLt~~~~~~y~ylepl~nDyRKir~~~~~g~~~l~ylDe 146 (204)
T KOG2889|consen 67 PTPFLCLDLKMLQIQPEKEIGSEFIMNHDFKYVRALGAFYLRLTGTDVDVYKYLEPLLNDYRKIRVVNGQGNRTLMYLDE 146 (204)
T ss_pred CccHHHHHHHHcCCCCCcccchHHHhccchHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhhhhcCCCceeeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 4789999
Q ss_pred HHHHHHhcccccccCCCCCChhHhHHHhhcccccCCCCcc
Q psy16257 183 MLRSFLTKLEWHGTLFPRIPVPIQQKLEKQMSAKFPPVYS 222 (346)
Q Consensus 183 fvd~LLt~~~~~~~~LPRip~ri~le~~~~L~~r~~p~~~ 222 (346)
|||+||+++++|+|.|||+.++.++|..+.|+++.+.+-+
T Consensus 147 ~iDdLL~~~r~cdI~Lprl~kr~~le~~~~lep~~s~ld~ 186 (204)
T KOG2889|consen 147 VIDDLLNKSRICDIHLPRLDKRWQLEELDLLEPRKSSLDE 186 (204)
T ss_pred HHHHHhhhcceeccccchhhhhhhhhhhcccccccccccc
Confidence 9999999999999999999999999999999999997754
No 4
>KOG0835|consensus
Probab=96.79 E-value=0.0045 Score=61.65 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=30.2
Q ss_pred CcCchhHhHhhhccccCCHHHHHHh---hcC--------CCCCceeeehhhhh
Q psy16257 104 IVSTAFCLLYKLFTLKMTRKQLNGL---INH--------TDSPYIRGLGFMYI 145 (346)
Q Consensus 104 ~PStffCLL~KLlqi~pt~~qi~~~---L~~--------~d~kYiRaLg~lYl 145 (346)
.|..++--.+.-||+-|..++++.. .+. -..|-+.|+|++||
T Consensus 140 hPhklii~YLqtL~~~~~~~l~Q~~wNfmNDslRT~v~vry~pe~iACaciyL 192 (367)
T KOG0835|consen 140 HPHKLIIMYLQTLQLPPNLKLLQAAWNFMNDSLRTDVFVRYSPESIACACIYL 192 (367)
T ss_pred ccHHHHHHHHHHhcCCCchhHHHHHHHhhhhccccceeeecCHHHHHHHHHHH
Confidence 4667777777888888888665543 321 25778889999998
No 5
>KOG4676|consensus
Probab=95.97 E-value=0.0045 Score=62.91 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=6.2
Q ss_pred cCCCCCCcccchh
Q psy16257 251 NAKHIPDNEAHYG 263 (346)
Q Consensus 251 ~~r~~~~~~~~~~ 263 (346)
+.++++.++++.+
T Consensus 292 rrrdRs~dRERrr 304 (479)
T KOG4676|consen 292 RRRDRSKDRERRR 304 (479)
T ss_pred chhhccchhhhhh
Confidence 4444555554444
No 6
>KOG0151|consensus
Probab=93.52 E-value=0.06 Score=58.37 Aligned_cols=15 Identities=13% Similarity=-0.108 Sum_probs=10.3
Q ss_pred eeeHHHHHHHHHhcc
Q psy16257 177 VMTIGNMLRSFLTKL 191 (346)
Q Consensus 177 ~~tmdefvd~LLt~~ 191 (346)
..+.+.+.+-||..+
T Consensus 735 ~~qpe~~~d~~l~q~ 749 (877)
T KOG0151|consen 735 REQPENERDRLLRQD 749 (877)
T ss_pred ccChhhHHHHHHHHH
Confidence 346777777777665
No 7
>KOG0147|consensus
Probab=93.26 E-value=0.16 Score=53.52 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=7.3
Q ss_pred HHHHHHHHHhcc
Q psy16257 180 IGNMLRSFLTKL 191 (346)
Q Consensus 180 mdefvd~LLt~~ 191 (346)
|++.++.+|...
T Consensus 5 ~~~d~Ea~lE~p 16 (549)
T KOG0147|consen 5 LDSDIEAMLEAP 16 (549)
T ss_pred hhhHHHHHhhhh
Confidence 566666666554
No 8
>KOG0670|consensus
Probab=92.99 E-value=0.12 Score=55.16 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=7.6
Q ss_pred hhccCCCCCCccccCCC
Q psy16257 266 ERHAKTSGYSDHKKSDR 282 (346)
Q Consensus 266 ~R~~~~~~r~~~r~rdr 282 (346)
++.+.+++++..++.++
T Consensus 137 ~rrsiDR~r~~~r~~~~ 153 (752)
T KOG0670|consen 137 ERRSIDRDREDNRRDPR 153 (752)
T ss_pred hhhhhhccccccccCcc
Confidence 34344555544444433
No 9
>KOG0113|consensus
Probab=91.16 E-value=0.51 Score=46.90 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=6.3
Q ss_pred CCCceeeehhhhhhhcc
Q psy16257 133 DSPYIRGLGFMYIRYTQ 149 (346)
Q Consensus 133 d~kYiRaLg~lYlRl~~ 149 (346)
+-||.+. |--||-+
T Consensus 98 gDPy~TL---Fv~RLny 111 (335)
T KOG0113|consen 98 GDPYKTL---FVARLNY 111 (335)
T ss_pred CCcccee---eeeeccc
Confidence 3455443 3335554
No 10
>KOG2888|consensus
Probab=91.15 E-value=0.17 Score=50.92 Aligned_cols=12 Identities=33% Similarity=0.268 Sum_probs=6.7
Q ss_pred hhcCCCCCceee
Q psy16257 128 LINHTDSPYIRG 139 (346)
Q Consensus 128 ~L~~~d~kYiRa 139 (346)
||..-.|-|||-
T Consensus 156 YIRalGFmYiRY 167 (453)
T KOG2888|consen 156 YIRALGFMYIRY 167 (453)
T ss_pred hhhhheeeEEee
Confidence 455555666654
No 11
>KOG0151|consensus
Probab=91.02 E-value=0.17 Score=55.10 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=6.4
Q ss_pred ccchHHHHhhh
Q psy16257 36 MNMNPLILTNI 46 (346)
Q Consensus 36 ~~i~~ilR~~I 46 (346)
|+|+.||.+-|
T Consensus 490 yLvsDIL~N~s 500 (877)
T KOG0151|consen 490 YLVSDILHNSS 500 (877)
T ss_pred HHHHHHHhhhh
Confidence 55666666544
No 12
>KOG4246|consensus
Probab=89.49 E-value=0.4 Score=53.08 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=12.4
Q ss_pred hhhccccCCHHHHHHh
Q psy16257 113 YKLFTLKMTRKQLNGL 128 (346)
Q Consensus 113 ~KLlqi~pt~~qi~~~ 128 (346)
.||-..+|+..|-..+
T Consensus 116 ~~ls~~qP~~q~q~s~ 131 (1194)
T KOG4246|consen 116 DKLSGYQPVDQRQYSE 131 (1194)
T ss_pred ccccCCCchhhhhhcc
Confidence 6788888988876655
No 13
>KOG4368|consensus
Probab=88.46 E-value=0.8 Score=49.12 Aligned_cols=11 Identities=9% Similarity=0.365 Sum_probs=5.1
Q ss_pred HHHhccccccc
Q psy16257 186 SFLTKLEWHGT 196 (346)
Q Consensus 186 ~LLt~~~~~~~ 196 (346)
.++..--||+.
T Consensus 510 ~~iPn~py~dl 520 (757)
T KOG4368|consen 510 SLIPNVPYFDL 520 (757)
T ss_pred ccCCCCccccc
Confidence 34444455553
No 14
>KOG0113|consensus
Probab=87.51 E-value=1.2 Score=44.42 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=17.1
Q ss_pred chhH-hHhhhccccCCHHHHHH-hhcCCCCCceee
Q psy16257 107 TAFC-LLYKLFTLKMTRKQLNG-LINHTDSPYIRG 139 (346)
Q Consensus 107 tffC-LL~KLlqi~pt~~qi~~-~L~~~d~kYiRa 139 (346)
-.|| |++--|...-++.-|.. |-....-|=|++
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ikrirl 133 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRL 133 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEE
Confidence 3455 44445566666666653 334455555544
No 15
>KOG0835|consensus
Probab=87.32 E-value=1.5 Score=44.13 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=12.1
Q ss_pred ehhhhhhhcc-Cchh-HHHhhhhhcccc
Q psy16257 140 LGFMYIRYTQ-PPAD-LWDWYEPYLEDE 165 (346)
Q Consensus 140 Lg~lYlRl~~-~p~e-l~~~lep~l~Dy 165 (346)
|..+||--.. +|.. |-+..-.|++|-
T Consensus 144 lii~YLqtL~~~~~~~l~Q~~wNfmNDs 171 (367)
T KOG0835|consen 144 LIIMYLQTLQLPPNLKLLQAAWNFMNDS 171 (367)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHhhhhc
Confidence 4455664443 4443 433333455553
No 16
>KOG0796|consensus
Probab=81.78 E-value=0.67 Score=46.25 Aligned_cols=7 Identities=0% Similarity=-0.031 Sum_probs=2.5
Q ss_pred hHHHhhh
Q psy16257 153 DLWDWYE 159 (346)
Q Consensus 153 el~~~le 159 (346)
.|-....
T Consensus 187 ~VCeVCG 193 (319)
T KOG0796|consen 187 RVCEVCG 193 (319)
T ss_pred hHHHhhh
Confidence 3333333
No 17
>KOG0796|consensus
Probab=81.08 E-value=0.8 Score=45.74 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=6.9
Q ss_pred hhcCcchHHHHHHHHH
Q psy16257 55 NLYELKTYHEVLDEVY 70 (346)
Q Consensus 55 ~l~~L~t~~~vvdeI~ 70 (346)
..|... +.++|..++
T Consensus 78 ~~~E~d-~~~~l~~~v 92 (319)
T KOG0796|consen 78 YGYEWD-ALEILERFV 92 (319)
T ss_pred hhhhHH-HHHHHHHHH
Confidence 445554 444444443
No 18
>KOG4246|consensus
Probab=79.39 E-value=1.9 Score=48.08 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.5
Q ss_pred CCCCChhH
Q psy16257 198 FPRIPVPI 205 (346)
Q Consensus 198 LPRip~ri 205 (346)
+|-+|.+.
T Consensus 192 npsmpfkw 199 (1194)
T KOG4246|consen 192 NPSMPFKW 199 (1194)
T ss_pred CCCCCccc
Confidence 34444443
No 19
>KOG2548|consensus
Probab=69.82 E-value=2 Score=45.75 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHhcccccccCCCCCChhHh
Q psy16257 187 FLTKLEWHGTLFPRIPVPIQ 206 (346)
Q Consensus 187 LLt~~~~~~~~LPRip~ri~ 206 (346)
-.....+-++.-|+.|..-.
T Consensus 336 a~aaaaasgvs~p~~p~~~~ 355 (653)
T KOG2548|consen 336 AMAAAAASGVSPPRSPPSQS 355 (653)
T ss_pred hhhhHHhccCCCCCCCCccc
Confidence 34455666777777776543
No 20
>KOG2548|consensus
Probab=66.88 E-value=3.2 Score=44.26 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=3.0
Q ss_pred hhHhHhh
Q psy16257 108 AFCLLYK 114 (346)
Q Consensus 108 ffCLL~K 114 (346)
-||-++|
T Consensus 228 ~fv~mlk 234 (653)
T KOG2548|consen 228 DFVYMLK 234 (653)
T ss_pred hHHHHhh
Confidence 4444433
No 21
>KOG4207|consensus
Probab=58.16 E-value=40 Score=32.54 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=8.9
Q ss_pred cccCCCCCCCCCCCCCCCC
Q psy16257 230 QQGRGGGGNYQNRSAPGAM 248 (346)
Q Consensus 230 ~~~~~~sr~~r~~~~~rr~ 248 (346)
..++.+++.+++..++.++
T Consensus 106 ~~gR~~gg~~rR~r~~~Rr 124 (256)
T KOG4207|consen 106 RGGRSGGGGYRRSRSSPRR 124 (256)
T ss_pred cCCcCCCCCCccccCCccc
Confidence 4555555555444444333
No 22
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=56.65 E-value=2 Score=38.17 Aligned_cols=12 Identities=42% Similarity=0.343 Sum_probs=4.9
Q ss_pred CCCCCCcCCCCC
Q psy16257 281 DRGDSYKRSYDS 292 (346)
Q Consensus 281 dr~r~r~RsrdR 292 (346)
.|..++.|||||
T Consensus 26 YRetSrERSRdR 37 (146)
T PF11671_consen 26 YRETSRERSRDR 37 (146)
T ss_pred HHHhhhhhhhhh
Confidence 333344444443
No 23
>KOG1847|consensus
Probab=56.46 E-value=9.2 Score=41.87 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=10.3
Q ss_pred CCCCCCCCcCCCCCCcccchhh
Q psy16257 243 SAPGAMSTNAKHIPDNEAHYGE 264 (346)
Q Consensus 243 ~~~rr~~r~~r~~~~~~~~~~e 264 (346)
.+..+-+-.+.+.|..++++-+
T Consensus 703 ~~~dr~ssksk~ep~ee~k~~~ 724 (878)
T KOG1847|consen 703 SSKDRHSSKSKHEPSEEDKYHS 724 (878)
T ss_pred CCCCcccccccCCChhhhhhhh
Confidence 3333444445555555554443
No 24
>KOG1847|consensus
Probab=52.34 E-value=17 Score=39.99 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=11.8
Q ss_pred cCcchHHHHHHHHHHhcccc
Q psy16257 57 YELKTYHEVLDEVYYKVQHL 76 (346)
Q Consensus 57 ~~L~t~~~vvdeI~~~V~~~ 76 (346)
+..+.+.-+|++|...|.-.
T Consensus 363 ~~tt~~~~~V~~i~~~i~~a 382 (878)
T KOG1847|consen 363 EPTTEMKRVVDKIVDFIQKA 382 (878)
T ss_pred cccchhhhhhhhchhhhhhc
Confidence 34455667777776555544
No 25
>KOG1567|consensus
Probab=51.48 E-value=11 Score=37.54 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=26.0
Q ss_pred CCcCchhHhHhhhccccCCHHHHHHhhcC
Q psy16257 103 GIVSTAFCLLYKLFTLKMTRKQLNGLINH 131 (346)
Q Consensus 103 ~~PStffCLL~KLlqi~pt~~qi~~~L~~ 131 (346)
|.++.|.|||+..|+-+|+.+.|.++|..
T Consensus 222 glh~dFacll~~~l~~kp~~~ri~eII~e 250 (344)
T KOG1567|consen 222 GLHCDFACLLFSHLKKKPNEERIEEIITE 250 (344)
T ss_pred CCcccHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 35888999999999999999999999863
No 26
>PF09875 DUF2102: Uncharacterized protein conserved in archaea (DUF2102); InterPro: IPR012025 The exact functionof this protein unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=44.33 E-value=15 Score=31.32 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=40.9
Q ss_pred cchHHHHhhhccchh---hHhhhcCc--chHHHHHHHHHHhcccccccccCCC---cCCCCcCccCCccc
Q psy16257 37 NMNPLILTNIQSSHY---FKVNLYEL--KTYHEVLDEVYYKVQHLEPWEKGSR---KTSGQTGMCGGVRG 98 (346)
Q Consensus 37 ~i~~ilR~~I~~S~Y---~Ke~l~~L--~t~~~vvdeI~~~V~~~ep~~~~s~---~~~~~~g~~GG~~g 98 (346)
..+.-|-.+||.+.+ .||.||++ +--+++|++++.+|+-+.|..-=.. =+.+..--|-+.+|
T Consensus 10 v~Ps~l~~~~~~~~~~v~iKETCFG~~i~Ge~e~V~~~i~~iR~ld~~~IF~KdRGFppgD~RRCRa~rg 79 (104)
T PF09875_consen 10 VSPSDLAMKLYELSLPVTIKETCFGAMIEGEEEEVDKVIEEIRKLDPNHIFVKDRGFPPGDPRRCRATRG 79 (104)
T ss_pred cCHHHHHHHHHhcCCCceeeecceeeEEECCHHHHHHHHHHHHhhCCCceEeecCCCCCCccHHhhhccC
Confidence 456677788888776 79999995 5557888888888888776432111 11233335666665
No 27
>KOG1902|consensus
Probab=43.90 E-value=12 Score=38.26 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=26.9
Q ss_pred hhhccchhhHhhh----cCc------chHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCCC
Q psy16257 44 TNIQSSHYFKVNL----YEL------KTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGI 104 (346)
Q Consensus 44 ~~I~~S~Y~Ke~l----~~L------~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~~ 104 (346)
.+|+|-.||+... |.+ -.++.+.-+|=....- .-|..+ +|...++||+..|-+...
T Consensus 101 E~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG~~~~q-~~W~~~----~G~~a~~G~~FkVkWiRl 166 (441)
T KOG1902|consen 101 EKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIGHGGSQ-IHWVLP----AGMSAMLGGVFKVKWIRL 166 (441)
T ss_pred HHHHHHHHhhcCcEEEEEEecccccchhhhhhcchhccCCCC-cccccc----CCcccccCceeeEeEEee
Confidence 5677777887543 332 2344555555211111 123321 123346888877644433
No 28
>KOG1902|consensus
Probab=40.36 E-value=15 Score=37.48 Aligned_cols=13 Identities=8% Similarity=-0.296 Sum_probs=5.7
Q ss_pred cCCCCCcccCCCC
Q psy16257 224 AGSGNYQQGRGGG 236 (346)
Q Consensus 224 ~~~~~~~~~~~~s 236 (346)
-.+.+++|.-.++
T Consensus 340 ~~~~~~~~~~~~~ 352 (441)
T KOG1902|consen 340 HHAPPPQAHPPYS 352 (441)
T ss_pred cCCCCcccCCCCC
Confidence 3444455544333
No 29
>KOG0132|consensus
Probab=38.03 E-value=53 Score=36.93 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=9.9
Q ss_pred CcCchhHhHhhhcc
Q psy16257 104 IVSTAFCLLYKLFT 117 (346)
Q Consensus 104 ~PStffCLL~KLlq 117 (346)
.+|.++|-+.-+++
T Consensus 160 ~~sda~asvadIs~ 173 (894)
T KOG0132|consen 160 PSSDALASVADISN 173 (894)
T ss_pred Cchhhhhhhccccc
Confidence 45678898877654
No 30
>KOG1049|consensus
Probab=37.08 E-value=20 Score=38.36 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred hccCCCCCCccccCCCCCCCcCCCCCCcccccCCCccC----------------------CccccCCCcCCccccccCCC
Q psy16257 267 RHAKTSGYSDHKKSDRGDSYKRSYDSKDDRYKSSSRYA----------------------SPERKKYRDDSRDTYRDRDK 324 (346)
Q Consensus 267 R~~~~~~r~~~r~rdr~r~r~RsrdR~~dR~r~r~R~r----------------------~Rd~~~~r~~sR~r~r~r~~ 324 (346)
++.....++.++...|++.+.|+++|..-+++.|+..- .++..+++...|+|.+++++
T Consensus 402 ~~~~~~~~~~~r~~~rs~~~r~~~~~s~~~~~~rd~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr 481 (538)
T KOG1049|consen 402 RHRSPHSRSRDRDNGRSGYRRRSRSRSPTRDPGRDKKPGELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRR 481 (538)
T ss_pred cCCCcccccccccccccchhhhhhcccCCCCcccCCCCCcccccccccChhhhccCCCccccccccccccchhhHHHHHH
Q ss_pred CCCCCccccCccc
Q psy16257 325 YSSSSKYDKYSKD 337 (346)
Q Consensus 325 ~~~~~~~~~~~~~ 337 (346)
-.+..+.+++++|
T Consensus 482 ~~~~~~~d~~~~~ 494 (538)
T KOG1049|consen 482 KESSVDKDRHREH 494 (538)
T ss_pred hhhccchhhcchh
No 31
>PF05555 DUF762: Coxiella burnetii protein of unknown function (DUF762); InterPro: IPR008481 This family consists several of several uncharacterised proteins from the bacterium Coxiella burnetii. C. burnetii is the causative agent of the Q fever disease.
Probab=36.83 E-value=31 Score=33.06 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=48.0
Q ss_pred eeecccCC--CcccchHHHHhhhccchhhHhhh---cCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccC
Q psy16257 26 VLPLWGNE--RTMNMNPLILTNIQSSHYFKVNL---YELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVG 100 (346)
Q Consensus 26 ~l~~~Gn~--~t~~i~~ilR~~I~~S~Y~Ke~l---~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~ 100 (346)
..||.|+. ..-+|+++--.+|-+|.=|=++- ++|.+ +.|++-| |++ ||+-|
T Consensus 49 ~~pI~~~~~~S~~~Lpkl~i~~i~~sIk~v~n~FKk~GLkd-e~i~nYI---L~~------------------GginG-- 104 (248)
T PF05555_consen 49 KTPIFADPQRSNRDLPKLPIPNIDNSIKYVKNEFKKHGLKD-ENISNYI---LHF------------------GGING-- 104 (248)
T ss_pred ccccccCcccccCCCccCchhHHHHHHHHHHHHHHHhccch-HHHHHHH---HHh------------------CCccc--
Confidence 46788877 34567878888888887633332 67886 8888877 443 66644
Q ss_pred CCCCcCchhHhHhhhccccCCHHH
Q psy16257 101 AGGIVSTAFCLLYKLFTLKMTRKQ 124 (346)
Q Consensus 101 a~~~PStffCLL~KLlqi~pt~~q 124 (346)
-.|----+|.+++.+.|..++
T Consensus 105 ---Y~slg~~~l~~~~~~~g~~~~ 125 (248)
T PF05555_consen 105 ---YMSLGQECLREISMNNGNNSE 125 (248)
T ss_pred ---cccHHHHHHHHHHhhCCcccc
Confidence 334344577888887776655
No 32
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=32.08 E-value=37 Score=34.18 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=14.0
Q ss_pred CCceeeehhhhhhhccCchhHHHh
Q psy16257 134 SPYIRGLGFMYIRYTQPPADLWDW 157 (346)
Q Consensus 134 ~kYiRaLg~lYlRl~~~p~el~~~ 157 (346)
--|.-+||+.-.=++|.|.-+|--
T Consensus 106 ~~FaP~LgLYS~vMtWtPipC~~e 129 (377)
T PF07420_consen 106 PFFAPILGLYSSVMTWTPIPCFRE 129 (377)
T ss_pred cccchhhhhhhhheeccccceeec
Confidence 334445665555666777666544
No 33
>KOG0107|consensus
Probab=29.05 E-value=1e+02 Score=29.08 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=5.1
Q ss_pred Hhccccccc
Q psy16257 188 LTKLEWHGT 196 (346)
Q Consensus 188 Lt~~~~~~~ 196 (346)
|.-..+|++
T Consensus 67 LDG~~~cG~ 75 (195)
T KOG0107|consen 67 LDGKDICGS 75 (195)
T ss_pred cCCccccCc
Confidence 445566664
No 34
>KOG1874|consensus
Probab=28.60 E-value=65 Score=38.04 Aligned_cols=13 Identities=15% Similarity=-0.115 Sum_probs=8.8
Q ss_pred chhHhHhhhcccc
Q psy16257 107 TAFCLLYKLFTLK 119 (346)
Q Consensus 107 tffCLL~KLlqi~ 119 (346)
.|||+++|..|==
T Consensus 947 ~F~~~~Lktv~rw 959 (1477)
T KOG1874|consen 947 RFFGSTLKTVQRW 959 (1477)
T ss_pred cchhhhhHHHhhh
Confidence 6888888855433
No 35
>PF06762 LMF1: Lipase maturation factor; InterPro: IPR009613 This family, which includes bacterial and eukaryotic members, represents a conserved region located towards the C-terminal end of a number of hypothetical proteins of unknown function. These are possibly integral membrane proteins.
Probab=28.54 E-value=42 Score=34.37 Aligned_cols=41 Identities=32% Similarity=0.609 Sum_probs=30.7
Q ss_pred cCchh-HhHhhhccccCCHHHHHHhhcCCCC------Cceeeehhhhhhhcc
Q psy16257 105 VSTAF-CLLYKLFTLKMTRKQLNGLINHTDS------PYIRGLGFMYIRYTQ 149 (346)
Q Consensus 105 PStff-CLL~KLlqi~pt~~qi~~~L~~~d~------kYiRaLg~lYlRl~~ 149 (346)
..+.| .|+.||++ ....|..+|.++-| |||||.-..| +|+.
T Consensus 312 ~~pWf~~ll~rLL~---n~~~Vl~LL~~nPF~~~~pP~~iRa~lY~Y-~Ft~ 359 (384)
T PF06762_consen 312 QNPWFLSLLYRLLQ---NDPEVLSLLDHNPFQPDKPPKYIRASLYRY-RFTK 359 (384)
T ss_pred CCchHHHHHHHHHc---CCHHHHHHhccCCCCCCCCCcEEEeEEEEE-ecCC
Confidence 34666 59999999 45568899998878 8999987666 3443
No 36
>KOG2146|consensus
Probab=26.69 E-value=6.9e+02 Score=25.39 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHhhhh-hccccccccccc---CCCc--eeeHHHHHHHHHhc--ccccccCCCCCChhHhHHHhhccc
Q psy16257 154 LWDWYEP-YLEDEEEVDVKA---GGGQ--VMTIGNMLRSFLTK--LEWHGTLFPRIPVPIQQKLEKQMS 214 (346)
Q Consensus 154 l~~~lep-~l~DyrKl~~~~---~~g~--~~tmdefvd~LLt~--~~~~~~~LPRip~ri~le~~~~L~ 214 (346)
||..||. -..|-.++-+-. ++|. .-.|+|+---||.+ ..-. -||...+++-...|.
T Consensus 68 vynqLee~k~ldpkkmQiNlTGFLngrnAreFmgeLW~LliS~a~~s~~-----giP~s~~~ek~~e~~ 131 (354)
T KOG2146|consen 68 VYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGELWSLLISEASQSQY-----GIPASFILEKKEEIP 131 (354)
T ss_pred HHHHHhhhcCCCchheeeeeehhcccccHHHHHHHHHHHHHhhcccccc-----CCchHHHhhhhhhcc
Confidence 4666666 455666665432 1232 23478876666642 2222 345555555554444
No 37
>KOG4849|consensus
Probab=26.57 E-value=6.9 Score=40.08 Aligned_cols=7 Identities=29% Similarity=0.530 Sum_probs=2.9
Q ss_pred cccCCCc
Q psy16257 29 LWGNERT 35 (346)
Q Consensus 29 ~~Gn~~t 35 (346)
|||.+++
T Consensus 149 iHGQ~P~ 155 (498)
T KOG4849|consen 149 IHGQSPT 155 (498)
T ss_pred ecCCCCe
Confidence 4444443
No 38
>KOG0132|consensus
Probab=24.81 E-value=1.2e+02 Score=34.34 Aligned_cols=16 Identities=6% Similarity=0.225 Sum_probs=10.2
Q ss_pred hHhhHHHHhhhcCCCC
Q psy16257 4 EDYNEQQEEEATGNHP 19 (346)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (346)
.++|+.|.+.--++++
T Consensus 5 ~~Fn~eL~SL~DsK~~ 20 (894)
T KOG0132|consen 5 KEFNGELDSLEDSKPG 20 (894)
T ss_pred HHHHHHHHHhhccCCc
Confidence 3566667766666665
No 39
>TIGR03272 methan_mark_6 putative methanogenesis marker protein 6. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.84 E-value=40 Score=29.96 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=39.6
Q ss_pred chHHHHhhhccchh---hHhhhcCc--chHHHHHHHHHHhcccccccccCCC---cCCCCcCccCCccc
Q psy16257 38 MNPLILTNIQSSHY---FKVNLYEL--KTYHEVLDEVYYKVQHLEPWEKGSR---KTSGQTGMCGGVRG 98 (346)
Q Consensus 38 i~~ilR~~I~~S~Y---~Ke~l~~L--~t~~~vvdeI~~~V~~~ep~~~~s~---~~~~~~g~~GG~~g 98 (346)
.+.=+-++||++.+ .|+.||++ +.-.++|++++.+|+-+.|..-=.. =+++..--|-+.+|
T Consensus 10 sPs~l~~~~~~l~~~v~iKETCfG~~i~G~~e~V~~~v~~iR~ld~~~IF~KdRGfp~gD~RRCRa~RG 78 (132)
T TIGR03272 10 SPKELVQKLYELELPVTIKETCFGAIITGPEEEVMKVAERIRELDPNHIFVKDRGFPPGDPRRCRANRG 78 (132)
T ss_pred CHHHHHHHHHhcCCCceeeeeeeeeeeeCCHHHHHHHHHHHHhhCCCceEeecCCCCCCchHHHhhccC
Confidence 45566677777765 79999996 4457888888888988876432111 11233335666665
Done!