Query psy16257
Match_columns 346
No_of_seqs 240 out of 373
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:47:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 97.3 0.00022 7.6E-09 71.0 6.4 17 114-130 108-124 (437)
2 3pgw_S U1-70K; protein-RNA com 97.3 0.00012 4.2E-09 72.9 4.1 9 152-160 117-125 (437)
3 1iio_A Conserved hypothetical 25.6 33 0.0011 27.2 2.0 37 31-69 1-37 (84)
4 2kxe_A DNA polymerase II small 20.7 24 0.00081 27.1 0.3 17 178-194 2-18 (75)
5 2vla_A Bpuji, restriction endo 18.9 1.7E+02 0.0058 27.8 5.7 97 47-189 101-219 (285)
6 3uip_D E3 SUMO-protein ligase 13.1 57 0.0019 24.8 0.8 12 103-114 24-35 (67)
7 3u21_A Nuclear factor related 10.1 1.3E+02 0.0044 25.5 2.1 28 103-130 6-35 (127)
8 3gmi_A UPF0348 protein MJ0951; 9.5 1.5E+02 0.0051 28.8 2.5 35 107-142 321-355 (357)
9 2keb_A DNA polymerase subunit 8.6 3.9E+02 0.013 21.6 4.3 20 108-129 70-89 (101)
10 1odf_A YGR205W, hypothetical 3 7.5 1E+02 0.0035 28.4 0.4 51 59-117 6-56 (290)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.35 E-value=0.00022 Score=71.02 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=7.9
Q ss_pred hhccccCCHHHHHHhhc
Q psy16257 114 KLFTLKMTRKQLNGLIN 130 (346)
Q Consensus 114 KLlqi~pt~~qi~~~L~ 130 (346)
.=|-...|.++|..++.
T Consensus 108 ~nL~~~~te~~L~~~F~ 124 (437)
T 3pgw_S 108 ARVNYDTTESKLRREFE 124 (437)
T ss_pred eCCCCCCCHHHHHHHHH
Confidence 33334445555555443
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=97.31 E-value=0.00012 Score=72.87 Aligned_cols=9 Identities=22% Similarity=0.236 Sum_probs=4.1
Q ss_pred hhHHHhhhh
Q psy16257 152 ADLWDWYEP 160 (346)
Q Consensus 152 ~el~~~lep 160 (346)
.+|..+|..
T Consensus 117 ~~L~~~F~~ 125 (437)
T 3pgw_S 117 SKLRREFEV 125 (437)
T ss_pred HHHHHHHHH
Confidence 344444444
No 3
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=25.58 E-value=33 Score=27.17 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=27.7
Q ss_pred cCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHH
Q psy16257 31 GNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEV 69 (346)
Q Consensus 31 Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI 69 (346)
|.-.+|.+.--|+.+|.+ +||.-=|+++|.++|+.-+
T Consensus 1 ~~~~~m~~~~ei~~qi~~--a~~~a~FPI~s~~EL~~Al 37 (84)
T 1iio_A 1 GSHMKMGVKEDIRGQIIG--ALAGADFPINSPEELMAAL 37 (84)
T ss_dssp CCCCCCSHHHHHHHHHHH--HHTTSSSTTBHHHHHHHHC
T ss_pred CCccchhhHHHHHHHHHH--HHcCCCCCCCCHHHHHHhC
Confidence 344677777788888864 7776669999988888754
No 4
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=20.69 E-value=24 Score=27.06 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=12.8
Q ss_pred eeHHHHHHHHHhccccc
Q psy16257 178 MTIGNMLRSFLTKLEWH 194 (346)
Q Consensus 178 ~tmdefvd~LLt~~~~~ 194 (346)
.||||||.+|+.+.+..
T Consensus 2 ~~MdelVk~L~~n~YLi 18 (75)
T 2kxe_A 2 SHMDEFVKGLMKNGYLI 18 (75)
T ss_dssp --CCHHHHHHHTTTCEE
T ss_pred ccHHHHHHHHHHCCcee
Confidence 38999999999887654
No 5
>2vla_A Bpuji, restriction endonuclease R.bpuji; hydrolase, DNA recognition, helix-turn-helix; HET: PG6; 1.30A {Bacillus pumilus}
Probab=18.86 E-value=1.7e+02 Score=27.76 Aligned_cols=97 Identities=14% Similarity=0.277 Sum_probs=54.4
Q ss_pred ccchhhHhhhcCc-------chHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCCCcCchhHhHhhhc---
Q psy16257 47 QSSHYFKVNLYEL-------KTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLF--- 116 (346)
Q Consensus 47 ~~S~Y~Ke~l~~L-------~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~~PStffCLL~KLl--- 116 (346)
.--.|||.-||.. + .++|++.|...|+. ..||-+++||
T Consensus 101 dl~~FFK~fl~~FQyP~gh~K-~~~I~~~i~~~I~f-------------------------------kP~~yil~ll~~a 148 (285)
T 2vla_A 101 DQPAFFKDICFKFQFPNGMDK-LDKVIEKVGAKIQI-------------------------------RQFPYILQVLLTA 148 (285)
T ss_dssp CHHHHHHHHHHHCCBSCSSSC-HHHHHHHHHTTCCB-------------------------------CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccCCCccch-HHHHHHHHhcCCee-------------------------------ccHHHHHHHHHhc
Confidence 3346899888653 5 47888887544432 3556666655
Q ss_pred ---cccCCHHHHHHhhcCCCCCceeeehhhhhhhcc---CchhHHHhhhhhcccccccccc-cCCCc-----eeeHHHHH
Q psy16257 117 ---TLKMTRKQLNGLINHTDSPYIRGLGFMYIRYTQ---PPADLWDWYEPYLEDEEEVDVK-AGGGQ-----VMTIGNML 184 (346)
Q Consensus 117 ---qi~pt~~qi~~~L~~~d~kYiRaLg~lYlRl~~---~p~el~~~lep~l~DyrKl~~~-~~~g~-----~~tmdefv 184 (346)
.+.+|.+.|--++=+ =||.+. +|.++|+.+..==.+ ++... ...|. ..|++|.+
T Consensus 149 ~~~~~~lTk~ei~~yvlN------------dLrVlq~k~~~~EV~~rIi~nR~n--~i~~~~~~~Gdv~sYd~qhi~eil 214 (285)
T 2vla_A 149 DNNNIQLSKDDIAYYVLN------------SLQVLQGKIKPIEVIEKIIEDRSN--DITKKVRHPGKETSYSMQHIREQL 214 (285)
T ss_dssp HHTTCCBCHHHHHHHTTT------------BHHHHTTCCCHHHHHHHHHHHHHT--TCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred cccceeeeHHHhhHHHhh------------hhHHhcCCCCHHHHHHHHHHhhhh--hhhhcccCCCCceeecHHHHHHHH
Confidence 345566655555433 367773 689998876542211 12111 12232 23588888
Q ss_pred HHHHh
Q psy16257 185 RSFLT 189 (346)
Q Consensus 185 d~LLt 189 (346)
+-|-.
T Consensus 215 nYmeL 219 (285)
T 2vla_A 215 NYLEL 219 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 6
>3uip_D E3 SUMO-protein ligase ranbp2; UBC9, nuclear pore complex, ligase isomerase-protein binding complex; HET: CME; 2.29A {Homo sapiens} PDB: 3uio_D* 3uin_D
Probab=13.14 E-value=57 Score=24.79 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.4
Q ss_pred CCcCchhHhHhh
Q psy16257 103 GIVSTAFCLLYK 114 (346)
Q Consensus 103 ~~PStffCLL~K 114 (346)
..|+||||-..+
T Consensus 24 qLPpTFFC~~~~ 35 (67)
T 3uip_D 24 KLPPTFFCYKNR 35 (67)
T ss_dssp TCCTTGGGGGSS
T ss_pred CCCCcEEEEecC
Confidence 369999997654
No 7
>3u21_A Nuclear factor related to kappa-B-binding protein; DNA/RNA-binding 3-helical bundle, winged-HTH domain, structu genomics; HET: MSE MLY; 2.18A {Homo sapiens}
Probab=10.15 E-value=1.3e+02 Score=25.46 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=21.8
Q ss_pred CCcCchhHhHhhhcccc--CCHHHHHHhhc
Q psy16257 103 GIVSTAFCLLYKLFTLK--MTRKQLNGLIN 130 (346)
Q Consensus 103 ~~PStffCLL~KLlqi~--pt~~qi~~~L~ 130 (346)
.+|+.|||||--+|..+ .+...|++.+.
T Consensus 6 e~~~sFFsLLrdif~s~~r~s~~~Le~~v~ 35 (127)
T 3u21_A 6 EISSSFFSLLLEILLLESQASLPMLEERVL 35 (127)
T ss_dssp SCCSCHHHHHHHHHHTTSEEEHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 57899999998888664 56777777775
No 8
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=9.52 E-value=1.5e+02 Score=28.76 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=24.7
Q ss_pred chhHhHhhhccccCCHHHHHHhhcCCCCCceeeehh
Q psy16257 107 TAFCLLYKLFTLKMTRKQLNGLINHTDSPYIRGLGF 142 (346)
Q Consensus 107 tffCLL~KLlqi~pt~~qi~~~L~~~d~kYiRaLg~ 142 (346)
+..|-++=-+.+..+.+.|..+++ ..-+|||+|||
T Consensus 321 sRi~Ril~~ilL~i~k~~i~~~~~-~~P~YiRVLGf 355 (357)
T 3gmi_A 321 HFRERILSKLEARIPNETLSKYIN-NYPAKIKILAV 355 (357)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHH-HCCSCCCEEEE
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHh-cCCcceeeccc
Confidence 446644334445668888888887 46789999997
No 9
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=8.55 E-value=3.9e+02 Score=21.65 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=15.2
Q ss_pred hhHhHhhhccccCCHHHHHHhh
Q psy16257 108 AFCLLYKLFTLKMTRKQLNGLI 129 (346)
Q Consensus 108 ffCLL~KLlqi~pt~~qi~~~L 129 (346)
+||+- +-...||.+.+..|=
T Consensus 70 AFsts--~~g~~pT~enL~~FE 89 (101)
T 2keb_A 70 AFCTS--THKVGLTSEILNSFE 89 (101)
T ss_dssp HHHHH--HTCSBCCHHHHHHHH
T ss_pred HHHHh--cCCCCCCHHHHHHHH
Confidence 67773 558899999888774
No 10
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=7.50 E-value=1e+02 Score=28.38 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=23.5
Q ss_pred cchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCCCcCchhHhHhhhcc
Q psy16257 59 LKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFT 117 (346)
Q Consensus 59 L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~~PStffCLL~KLlq 117 (346)
+++.+.+++.|.. +|..|.....+...-.+++|+. | .| -||+.-+|.++|.
T Consensus 6 ~~~~~~~~~~l~~---~i~~~~~~~~~~~~ii~I~G~s-G---sG-KSTla~~L~~~l~ 56 (290)
T 1odf_A 6 KTVLDYTIEFLDK---YIPEWFETGNKCPLFIFFSGPQ-G---SG-KSFTSIQIYNHLM 56 (290)
T ss_dssp CCHHHHHHHHHHH---HHHHHHTTTCCSCEEEEEECCT-T---SS-HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHH---HHHHhhhccCCCCeEEEEECCC-C---CC-HHHHHHHHHHHhh
Confidence 3556677777743 3333322211111123444543 2 22 3455556666665
Done!