Query psy16257
Match_columns 346
No_of_seqs 240 out of 373
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 16:47:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16257.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16257hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iioa_ a.39.4.1 (A:) Hypothet 22.1 20 0.0014 26.6 2.0 36 31-68 1-36 (84)
2 d1gtra2 c.26.1.1 (A:8-338) Glu 21.0 80 0.0058 27.5 6.4 111 52-190 196-330 (331)
3 d2zkmx1 a.39.1.7 (X:142-311) P 19.1 11 0.00081 29.8 -0.0 16 177-192 144-159 (170)
4 d1f7ua3 d.67.2.1 (A:2-135) Arg 17.0 27 0.0019 27.3 1.9 119 2-160 2-124 (134)
5 d1w7jb1 a.39.1.5 (B:11-149) My 14.5 1.1E+02 0.0083 21.7 5.0 28 105-132 18-45 (139)
6 d1wdcb_ a.39.1.5 (B:) Myosin E 11.0 2.7E+02 0.019 19.9 7.0 28 105-132 25-52 (142)
7 d1b5ea_ d.117.1.1 (A:) dCMP hy 10.3 1.1E+02 0.0081 25.8 4.1 39 1-39 6-46 (241)
8 d2fg9a1 b.45.1.1 (A:1-157) 5-n 9.1 49 0.0036 25.0 1.1 31 114-145 2-43 (157)
9 d2vglb_ a.118.1.10 (B:) Adapti 7.1 82 0.006 28.9 1.9 43 108-150 481-529 (579)
10 d1jkwa2 a.74.1.1 (A:162-287) C 6.7 76 0.0056 24.0 1.2 26 135-160 48-73 (126)
No 1
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=22.12 E-value=20 Score=26.56 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=28.2
Q ss_pred cCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHH
Q psy16257 31 GNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDE 68 (346)
Q Consensus 31 Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvde 68 (346)
|..-+|.+..-|+.+|.+ +||.-=|+++|..+|+.-
T Consensus 1 ~~~~~m~vkeei~~qi~~--af~gA~FPI~s~~eL~~a 36 (84)
T d1iioa_ 1 GSHMKMGVKEDIRGQIIG--ALAGADFPINSPEELMAA 36 (84)
T ss_dssp CCCCCCSHHHHHHHHHHH--HHTTSSSTTBHHHHHHHH
T ss_pred CCccchhHHHHHHHHHHH--HHcCCCCCCCCHHHHHHh
Confidence 456688899999999874 677655999998888774
No 2
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}
Probab=21.04 E-value=80 Score=27.47 Aligned_cols=111 Identities=13% Similarity=0.162 Sum_probs=67.2
Q ss_pred hHhhhcCcchHHHHHHHHHHhcccccccccCCCcCCCCcCccCCccccCCCCCcCchh-HhHhhhcccc-----------
Q psy16257 52 FKVNLYELKTYHEVLDEVYYKVQHLEPWEKGSRKTSGQTGMCGGVRGVGAGGIVSTAF-CLLYKLFTLK----------- 119 (346)
Q Consensus 52 ~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~~s~~~~~~~g~~GG~~g~~a~~~PStff-CLL~KLlqi~----------- 119 (346)
+|..++.+=.+..|||-+...|+|| +||. --..+|+. .+|++.|.+.
T Consensus 196 ~r~dg~ptY~lA~vVDD~~~gIThV-------------------iRG~--D~l~~T~~q~~l~~~Lg~~~p~~~h~~~~l 254 (331)
T d1gtra2 196 NKWCIYPMYDFTHCISDALEGITHS-------------------LCTL--EFQDNRRLYDWVLDNITIPVHPRQYEFSRL 254 (331)
T ss_dssp TSCSEEECHHHHHHHHHHHHTCSEE-------------------EEEG--GGTTTHHHHHHHHHHSCCSCCCEEEEECCC
T ss_pred cccccccHHhhhHHHhhhhhcccce-------------------eccc--ccccccHHHHHHHHhccCCCCcceeecccc
Confidence 3444444434778999999999998 2331 13566665 7888876553
Q ss_pred ------CCHHHHHHhhcCC---CCCceeeehhhhhhhcc-CchhHHHhhhhhcccccccccccCCC--ceeeHHHHHHHH
Q psy16257 120 ------MTRKQLNGLINHT---DSPYIRGLGFMYIRYTQ-PPADLWDWYEPYLEDEEEVDVKAGGG--QVMTIGNMLRSF 187 (346)
Q Consensus 120 ------pt~~qi~~~L~~~---d~kYiRaLg~lYlRl~~-~p~el~~~lep~l~DyrKl~~~~~~g--~~~tmdefvd~L 187 (346)
|++..+...++.. .++=.++..+.++|=.| .|.-|.++|--+ - ....+. .+.+++++|...
T Consensus 255 ~~~g~~lskr~l~~~~~~~~~~~~dd~~~~sl~~lr~~G~~peai~nyla~L-G------ws~~d~~~e~~sLe~~~r~~ 327 (331)
T d1gtra2 255 NLEYTVMSKRKLNLLVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRI-G------VTKQDNTIEMASLESCIRED 327 (331)
T ss_dssp CBTTSCCCHHHHHHHHHTTSSSSTTCTTSCBHHHHHHHTCCHHHHHHHHHHH-C------CCSSCCCBCHHHHHHHHHHH
T ss_pred ccccchhhhcccchhcccCccccccCCCcccHHHHHHCCCCHHHHHHHHHHh-C------CCCCCCcccHHhHHHHHHHh
Confidence 4566666666532 22333555555666664 788887777632 2 111222 356899999887
Q ss_pred Hhc
Q psy16257 188 LTK 190 (346)
Q Consensus 188 Lt~ 190 (346)
|.+
T Consensus 328 ln~ 330 (331)
T d1gtra2 328 LNE 330 (331)
T ss_dssp HHH
T ss_pred ccC
Confidence 764
No 3
>d2zkmx1 a.39.1.7 (X:142-311) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.13 E-value=11 Score=29.80 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=13.8
Q ss_pred eeeHHHHHHHHHhccc
Q psy16257 177 VMTIGNMLRSFLTKLE 192 (346)
Q Consensus 177 ~~tmdefvd~LLt~~~ 192 (346)
.|++++|+.-|+.++.
T Consensus 144 ~ls~d~F~~fL~S~en 159 (170)
T d2zkmx1 144 QLSPEGMVWFLCGPEN 159 (170)
T ss_dssp -CCHHHHHHHHHSTTS
T ss_pred eECHHHHHHHHcCccC
Confidence 6999999999999874
No 4
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.05 E-value=27 Score=27.32 Aligned_cols=119 Identities=11% Similarity=0.061 Sum_probs=68.5
Q ss_pred CchHhhHHHHhhhcCCCCCCCCCCeeecccCCCcccchHHHHhhhccchhhHhhhcCcchHHHHHHHHHHhccccccccc
Q psy16257 2 STEDYNEQQEEEATGNHPGYKKNNVLPLWGNERTMNMNPLILTNIQSSHYFKVNLYELKTYHEVLDEVYYKVQHLEPWEK 81 (346)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~n~l~~~Gn~~t~~i~~ilR~~I~~S~Y~Ke~l~~L~t~~~vvdeI~~~V~~~ep~~~ 81 (346)
|..+.-.||+....+++| + +-|.+|++|+-.|.|.-|.+-. . .+.++.. +.|+..|..- +
T Consensus 2 ~~~~~~~~l~~l~~~~~~------~--~~~~~p~~n~~D~~R~~Ia~~L--~-~i~gvd~-----~~i~~~le~p----~ 61 (134)
T d1f7ua3 2 STANMISQLKKLSIAEPA------V--AKDSHPDVNIVDLMRNYISQEL--S-KISGVDS-----SLIFPALEWT----N 61 (134)
T ss_dssp HHHHHHHHHHHCCCSCHH------H--HTTCCTTTCHHHHHHHHHHHHH--H-HHHCCCH-----HHHGGGCEEC----S
T ss_pred chhHHHHHHHHcCCCCCC------C--CCCCCcccChHHHHHHHHHHHH--H-HHhCCCH-----HHHHHHhhCC----C
Confidence 345566789888887776 2 3388899999999999998653 3 3667762 3344334432 1
Q ss_pred CCCcCCCCcCccCCccccCCCCCcCchhHhHhhhccccCCHHHHHHhhc---C-CCCCceeeehhhhhhhccCchhHHHh
Q psy16257 82 GSRKTSGQTGMCGGVRGVGAGGIVSTAFCLLYKLFTLKMTRKQLNGLIN---H-TDSPYIRGLGFMYIRYTQPPADLWDW 157 (346)
Q Consensus 82 ~s~~~~~~~g~~GG~~g~~a~~~PStffCLL~KLlqi~pt~~qi~~~L~---~-~d~kYiRaLg~lYlRl~~~p~el~~~ 157 (346)
..- -|=. .+-|-++|+.-..|. ++-.++.. . +.+.=+.+.|- ||-+.+.+.-+++.
T Consensus 62 ~~d--------~GDl----------a~~~p~lk~kgknP~-eiA~ela~~l~~~~~i~~v~~~Gp-FINf~l~~~~l~~~ 121 (134)
T d1f7ua3 62 TME--------RGDL----------LIPIPRLRIKGANPK-DLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKL 121 (134)
T ss_dssp SGG--------GCSE----------EEEGGGGCCTTCCHH-HHHHHHHHTCCCTTTEEEEEEETT-EEEEEECHHHHHHH
T ss_pred CCc--------ccch----------HHHHHHHHHcCCCHH-HHHHHHHHHcCCCCceeeEEeeCC-eEEEEECHHHHHHH
Confidence 100 0111 122444454433332 22222322 2 22334568887 99999999888876
Q ss_pred hhh
Q psy16257 158 YEP 160 (346)
Q Consensus 158 lep 160 (346)
+=+
T Consensus 122 vl~ 124 (134)
T d1f7ua3 122 VIP 124 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
No 5
>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.50 E-value=1.1e+02 Score=21.69 Aligned_cols=28 Identities=4% Similarity=0.042 Sum_probs=21.7
Q ss_pred cCchhHhHhhhccccCCHHHHHHhhcCC
Q psy16257 105 VSTAFCLLYKLFTLKMTRKQLNGLINHT 132 (346)
Q Consensus 105 PStffCLL~KLlqi~pt~~qi~~~L~~~ 132 (346)
...-|+-+++.+-+.|+.+++..++.+-
T Consensus 18 ~~~el~~~l~~lg~~~t~~e~~~~~~~~ 45 (139)
T d1w7jb1 18 LYSQCGDVMRALGQNPTNAEVLKVLGNP 45 (139)
T ss_dssp ESTTHHHHHHHTTCCCCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3355677778888999999999998753
No 6
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=10.98 E-value=2.7e+02 Score=19.87 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=22.8
Q ss_pred cCchhHhHhhhccccCCHHHHHHhhcCC
Q psy16257 105 VSTAFCLLYKLFTLKMTRKQLNGLINHT 132 (346)
Q Consensus 105 PStffCLL~KLlqi~pt~~qi~~~L~~~ 132 (346)
...-|+.+++-+-+.|+.++|..++.+.
T Consensus 25 ~~~el~~~l~~lg~~~~~~el~~~~~~~ 52 (142)
T d1wdcb_ 25 SKEDIKAISEQLGRAPDDKELTAMLKEA 52 (142)
T ss_dssp CHHHHHHHHHHHSSCCCHHHHHHHHTTS
T ss_pred ChHHHHHHHHHhhcCCCHHHHHHHHHhc
Confidence 3456777788889999999999999754
No 7
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]}
Probab=10.31 E-value=1.1e+02 Score=25.82 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=26.7
Q ss_pred CCchHhhHHHHhhhcCCCCCCCCC--CeeecccCCCcccch
Q psy16257 1 MSTEDYNEQQEEEATGNHPGYKKN--NVLPLWGNERTMNMN 39 (346)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~--n~l~~~Gn~~t~~i~ 39 (346)
|+.++|.+.|........-..+.- +++.|.|..-.++++
T Consensus 6 ~~~~~~~~~l~~~l~~g~~~~drtG~~T~~i~g~~~~~d~~ 46 (241)
T d1b5ea_ 6 MTVEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEP 46 (241)
T ss_dssp BCHHHHHHHHHHHHHTTCCEECTTSCEEEEEEEEEEECCSS
T ss_pred CcHHHHHHHHHHHHHCCCcccCCCCCCeeeeCceEEEEeCC
Confidence 778899999887776655544444 488888855444444
No 8
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=9.07 E-value=49 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=21.2
Q ss_pred hhccccCCHHHHHHhhcC-----------CCCCceeeehhhhh
Q psy16257 114 KLFTLKMTRKQLNGLINH-----------TDSPYIRGLGFMYI 145 (346)
Q Consensus 114 KLlqi~pt~~qi~~~L~~-----------~d~kYiRaLg~lYl 145 (346)
|-|+|. +.++|.+||+. +.+||+.-+.+.|-
T Consensus 2 k~~~i~-D~~~i~~~L~~~~~~~Lat~~~dG~P~~~Pv~f~~~ 43 (157)
T d2fg9a1 2 KTIVIE-DKQRIESIILQADACFVGITDLEGNPYVVPMNFGYE 43 (157)
T ss_dssp EEEEEC-CHHHHHHHHHHCSCEEEEEECTTSCEEEEEECCEEE
T ss_pred CceecC-CHHHHHHHHhcCCEEEEEEECCCCCEEEEEEEeeee
Confidence 444444 56788888872 35899999887654
No 9
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.10 E-value=82 Score=28.85 Aligned_cols=43 Identities=9% Similarity=0.084 Sum_probs=33.4
Q ss_pred hhHhHhhhccccCC--HHHHHHhhc----CCCCCceeeehhhhhhhccC
Q psy16257 108 AFCLLYKLFTLKMT--RKQLNGLIN----HTDSPYIRGLGFMYIRYTQP 150 (346)
Q Consensus 108 ffCLL~KLlqi~pt--~~qi~~~L~----~~d~kYiRaLg~lYlRl~~~ 150 (346)
.+=.++|||--.|+ .+++...|+ ..++++++..+++|.|+...
T Consensus 481 iLta~~Kl~~~~p~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (579)
T d2vglb_ 481 LLTAIVKLFLKKPSETQELVQQVLSXXXXXXXXXXXXXXXXXXXXXXXX 529 (579)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhhccccccchhhhhhhhhhhhhhhh
Confidence 34578899988885 456666664 46899999999999999964
No 10
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.74 E-value=76 Score=24.01 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=14.2
Q ss_pred CceeeehhhhhhhccCchhHHHhhhh
Q psy16257 135 PYIRGLGFMYIRYTQPPADLWDWYEP 160 (346)
Q Consensus 135 kYiRaLg~lYlRl~~~p~el~~~lep 160 (346)
|...|||++|+--.....++..|++.
T Consensus 48 P~qIalaal~~a~~~~~~~l~~y~~~ 73 (126)
T d1jkwa2 48 PSQIALTAILSSASRAGITMESYLSE 73 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 55667888887444333344444443
Done!