RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16257
         (346 letters)



>d1a1xa_ b.63.1.1 (A:) p13-MTCP1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 106

 Score = 26.8 bits (59), Expect = 1.5
 Identities = 12/64 (18%), Positives = 16/64 (25%), Gaps = 7/64 (10%)

Query: 150 PPADLWDWYEPYLEDEEEVDVKAGGGQVMTIGNMLRSFLTKLEWHGTLFPRIPVPIQQKL 209
           PP  LW   E    DE            + +     SFL        +           L
Sbjct: 8   PPDHLWVHQEGIYRDEY-------QRTWVAVVEEETSFLRARVQQIQVPLGDAARPSHLL 60

Query: 210 EKQM 213
             Q+
Sbjct: 61  TSQL 64


>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 316

 Score = 26.9 bits (59), Expect = 3.5
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 188 LTKLEWHGTLFPRIPVPIQ 206
           L+K+ W G     +PV + 
Sbjct: 282 LSKMNWRGFRSRNLPVTVN 300


>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
           {Thermoanaerobacterium [TaxId: 28895]}
          Length = 406

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 125 LNGLINHTDSPYIRGLGFMYIRYTQP 150
             G+IN  +  Y+ G+G   I   QP
Sbjct: 54  WQGIINKINDGYLTGMGVTAIWIPQP 79


>d1cjxa1 d.32.1.3 (A:4-153) 4-hydroxyphenylpyruvate dioxygenase,
           HppD {Pseudomonas fluorescens [TaxId: 294]}
          Length = 150

 Score = 25.3 bits (55), Expect = 8.1
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 130 NHTDSPYIRGLGFMYIRYTQPPADLWDWYEPYLEDEEEVD 169
              + P I+G+G   +       +    Y+      E V+
Sbjct: 106 MELNLPAIKGIGGAPLYLIDRFGEGSSIYDIDFVYLEGVE 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,297,281
Number of extensions: 60566
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (25.1 bits)