BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16259
(896 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 115/170 (67%)
Query: 518 GETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
GE P+ C C K+F+R +HL H R HTGE P+KC C KSF+ K+ L H R HTG+ P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCS 637
+KC C KSF+++ +L H R HTGE PY C C K+FS+ HL H R HTGE P+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 638 YCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
C +SF+R+D+L+ H R HTGE P+KC C KSF+R++ LN H R HTG+
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 114/178 (64%)
Query: 454 VNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHI 513
V GE P+ C CGK ++R +HLA H R+HT + P+KC C KSF+ K+ T H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 514 MWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHT 573
HTGE P++C C K+F+++ +L H R HTGE P+ C C KSF++ HL H R HT
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 574 GDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
G+ P+KC C KSF+R+++L H R HTGE PY+C C K+FSR+D L H R HTG+
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 111/170 (65%)
Query: 490 NDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+ P+ C C KSF+R +H H HTGE P++C C K+F+ K+ L H R HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 550 HKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQ 609
+KC C KSF+++ +L H R HTG+ P+ C C KSF++ HL H R HTGE PY+C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 610 YCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
C K+FSR+D+L H R HTGE P+KC C +SF+R+D LN H R HTG+
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 173 bits (439), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 113/170 (66%)
Query: 546 GESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
GE P+ C C KSF+R +HL H R HTG+ P+KC C KSF+ K+ L H R HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCH 665
Y+C C K+FS++ +L H R HTGE P+ C C +SF++ HL H R HTGE P+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 666 FCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
C KSF+R+++L+ H R HTGE P+KC C K+F+R++ L H + H G+
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 110/169 (65%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPH 438
++PY C C K+F+R +HL H R HTGE PYKC CGK+FS K+ + H R HTGE P+
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 439 RCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEI 498
+C C K+F+++ + H HTGE P+ C CGK +++ HL H R+HT + P+KC
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 499 CTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
C KSF+R+++ H HTGE P++C C K+F+R++ L H R HTG+
Sbjct: 139 CGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 107/175 (61%)
Query: 594 VNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHV 653
V GE PY C C K+FSR DHL H R HTGE P+KC C +SF+ K L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 654 RLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHA 713
R HTGE P+KC C KSF+++ +L H R HTGE P+ C C K+F++ HL H + H
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 714 GETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
GE + C C K F ++++L H R+HTGE+P+ C +CGKSF + L HQR+H
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 108/169 (63%)
Query: 406 GETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
GE PY C CGK+FSR +H+ H R HTGE P++C C K+F+ K+ H HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 466 HVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCD 525
+ C CGK ++++ +L H R+HT + P+ C C KSF++ H H HTGE P++C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 526 FCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTG 574
C K+F+R+++L H R HTGE P+KC C KSF+R++ L H R HTG
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/179 (45%), Positives = 110/179 (61%)
Query: 566 VNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHV 625
V G+ P+ C C KSF+R +HL H R HTGE PY+C C K+FS K L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 626 RQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHT 685
R HTGE P+KC C +SF+++ +L H R HTGE P+ C C KSF++ HL H R HT
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 686 GESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
GE P+KC C K+F+R+++L H + H GE + C C K F +++ L H R+HTG++
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 108/170 (63%)
Query: 434 GETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
GE P+ C C K+F+R +H H HTGE P+ C CGK ++ K+ L H R+HT + P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCN 553
+KC C KSF+++ + H HTGE P+ C C K+F++ HL H R HTGE P+KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 554 YCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
C KSF+R+++L H R HTG+ P+KC C KSF+R++ L H R HTG+
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 622 VNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHI 681
V GE P+ C C +SF+R DHL H R HTGE P+KC C KSF+ K+ L H
Sbjct: 10 VAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Query: 682 RLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHT 741
R HTGE P+KC C K+F+++ +L H + H GE + C C K F + HL H R+HT
Sbjct: 70 RTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Query: 742 GERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRS 801
GE+P+ C +CGKSF + NL HQR+H E+P+KC C K F+ + L H R+
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTH------TGEKPYKCPECGKSFSRRDALNVHQRT 183
Query: 802 HLNER 806
H ++
Sbjct: 184 HTGKK 188
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 104/174 (59%), Gaps = 6/174 (3%)
Query: 655 LHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAG 714
L GE P+ C C KSF+R +HL H R HTGE P+KC C K+F+ K+ LT H + H G
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGE 774
E + C C K F ++ +L H R+HTGE+P+AC +CGKSF +L HQR+H
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH------ 128
Query: 775 VLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
E+P+KC C K F+ + +L +H R+H E+P+ CP C KSF + H R
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 102/170 (60%)
Query: 350 GGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
G Y C C F+ + L H + H+ ++PY C C K+F+ K+ L H R HTGE P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQ 469
YKC CGK+FS++ ++ H R HTGE P+ C C K+F++ H H HTGE P+ C
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 470 VCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGE 519
CGK ++R+++L H R+HT + P+KC C KSF+R++ H HTG+
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 101/167 (60%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYC 383
KP+ C CGK+F L H + H G Y C C F++++ L RH + H+ ++PY
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 384 CSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEIC 443
C C K+F+++ +L H R HTGE PY C CGK+FS+ H+ H R HTGE P++C C
Sbjct: 80 CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 444 KKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTN 490
K+F+R+++ H HTGE P+ C CGK ++R++ L H R+HT
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 98/171 (57%)
Query: 293 PVMGNHTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGS 352
P + C CGK F + H+R HT KP+ C CGK+F + +L H + H G
Sbjct: 17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEK 76
Query: 353 MYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKC 412
Y C C F+ +L+ H + H+ ++PY C C K+F++ HL H R HTGE PYKC
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Query: 413 QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGE 463
CGK+FSR++++ H R HTGE P++C C K+F+R++ H HTG+
Sbjct: 137 PECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 577 PHKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNHVRQHTGES 632
P C Y C K + + HL H R+HTGE PYQC + C + FSR D L H R+HTG
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK 65
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHF--CSKSFTRKEHLNNHIRLH 684
P +C C++ F+R DHL H R HTGE P C + C K F R + L H +H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 527 CSKTFTRKEHLLNHVRQHTGESPHKCNY--CAKSFTRKEHLVNHVRQHTGDSPHKCNYCA 584
C+K + + HL H R+HTGE P++C++ C + F+R + L H R+HTG P +C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 585 KSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNH 624
+ F+R +HL H R HTGE P+ C++ C K F+R D LV H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 601 TGETPYQCQY--CPKAFSRKDHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLH 656
+ + P+ C Y C K + + HL H R+HTGE P++C + C++ F+R D L H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDF--CLKTFTRKEHLTNH 708
TG P +C C + F+R +HL H R HTGE P C + C K F R + L H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 377 SIDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHVRKH 432
S RP+ C+ C K + + HL+ H+R HTGE PY+C + C + FSR + + H R+H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQV--CGKKYTRKEHLANH 484
TG P +C+ C++ F+R +H H HTGE P C+ C KK+ R + L H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 461 TGETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEI--CTKSFTRKEHFTNHIMWH 516
+ + P +C C K+Y + HL H R HT + P++C+ C + F+R + H H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNY--CAKSFTRKEHLVNH 568
TG P +C C + F+R +HL H R HTGE P C + C K F R + LV H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 667 CSKSFTRKEHLNNHIRLHTGESPHKCDF--CLKTFTRKEHLTNHLKQHAGETEHVCNICS 724
C+K + + HL H R HTGE P++CDF C + F+R + L H ++H G C C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 725 KPFLKKEHLVNHSRSHTGERPFACT--DCGKSFPLKGNLLFHQRSH 768
+ F + +HL H+R+HTGE+PF+C C K F L+ H H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 321 TERKPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAV--CFHVFANEESLQRHTKRH 376
+E++PF C C K + + L H + H G Y C C F+ + L+RH +RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNH 428
+ +P+ C C + F+R +HL+ HTR HTGE P+ C++ C K F+R + +V H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 369 LQRHTKRHSIDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMV 426
LQ H+++H+ ++PY C C + F+R + L+ H R HTG P++C+ C + FSR +H+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 427 NHVRKHTGETPHRCEI--CKKAFTRKEHYVNH 456
H R HTGE P C C+K F R + V H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 443 CKKAFTRKEHYVNHVMWHTGETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICT 500
C K + + H H HTGE P+ C C ++++R + L H R HT PF+C+ C
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQ 73
Query: 501 KSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLNH 540
+ F+R +H H HTGE P C + C K F R + L+ H
Sbjct: 74 RKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 723 CSKPFLKKEHLVNHSRSHTGERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPF 780
C+K + K HL HSR HTGE+P+ C DC + F L HQR H +PF
Sbjct: 14 CNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH------TGVKPF 67
Query: 781 KCDVCPKDFTCKGHLVSHLRSHLNERPHVC--PHCSKSFVEHTCMIKH 826
+C C + F+ HL +H R+H E+P C P C K F +++H
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 298 HTCDL--CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYT 355
+ CD C + F Q+ H+R HT KPF C C + F L +H + H G ++
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 356 CAV--CFHVFANEESLQRH 372
C C FA + L RH
Sbjct: 97 CRWPSCQKKFARSDELVRH 115
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 741 TGERPFACT--DCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDV--CPKDFTCKGHLV 796
+ +RPF C C K + +L H R H E+P++CD C + F+ L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH------TGEKPYQCDFKDCERRFSRSDQLK 55
Query: 797 SHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
H R H +P C C + F + H R
Sbjct: 56 RHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 52/82 (63%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPY 606
E P+KC C KSF++ +L H R HTG+ P+KC C KSF++ L H R HTGE PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 607 QCQYCPKAFSRKDHLVNHVRQH 628
+C C K+FSR DHL H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPH 634
+ P+KC C KSF++ +L H R HTGE PY+C C K+FS+ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 635 KCSYCKQSFTRKDHLNNHVRLH 656
KC C +SF+R DHL+ H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 53/82 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPH 662
E PY+C C K+FS+ +L H R HTGE P+KC C +SF++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 663 KCHFCSKSFTRKEHLNNHIRLH 684
KC C KSF+R +HL+ H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPH 466
E PYKC CGK+FS+ ++ H R HTGE P++C C K+F++ H HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 467 VCQVCGKKYTRKEHLANHMRSHTN 490
C CGK ++R +HL+ H R+H N
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQN 85
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 52/82 (63%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPH 578
E P++C C K+F++ +L H R HTGE P+KC C KSF++ L H R HTG+ P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 579 KCNYCAKSFTRKEHLVNHVRQH 600
KC C KSF+R +HL H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 378 IDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+++PY C C K+F++ +L+ H R HTGE PYKC CGK+FS+ + H R HTGE P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 438 HRCEICKKAFTRKEHYVNHVMWH 460
++C C K+F+R +H H H
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTH 83
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPH 690
E P+KC C +SF++ +L H R HTGE P+KC C KSF++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 691 KCDFCLKTFTRKEHLTNHLKQH 712
KC C K+F+R +HL+ H + H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 50/82 (60%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPH 550
+ P+KC C KSF++ + H HTGE P++C C K+F++ L H R HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 551 KCNYCAKSFTRKEHLVNHVRQH 572
KC C KSF+R +HL H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQ 413
Y C C F+ +LQ+H + H+ ++PY C C K+F++ L+ H R HTGE PYKC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 414 YCGKNFSRKEHMVNHVRKH 432
CGK+FSR +H+ H R H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPH 522
E P+ C CGK +++ +L H R+HT + P+KC C KSF++ H HTGE P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 523 RCDFCSKTFTRKEHLLNHVRQH 544
+C C K+F+R +HL H R H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPF 746
E P+KC C K+F++ +L H + H GE + C C K F + L H R+HTGE+P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 747 ACTDCGKSFPLKGNLLFHQRSHR 769
C +CGKSF +L HQR+H+
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQ 84
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEH 718
E P+KC C KSF++ +L H R HTGE P+KC C K+F++ L H + H GE +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 719 VCNICSKPFLKKEHLVNHSRSHTGER 744
C C K F + +HL H R+H ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGE 774
E + C C K F + +L H R+HTGE+P+ C +CGKSF +L HQR+H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH------ 55
Query: 775 VLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+P+KC C K F+ HL H R+H N++
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPF 494
E P++C C K+F++ + H HTGE P+ C CGK +++ L H R+HT + P+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 495 KCEICTKSFTRKEHFTNHIMWH 516
KC C KSF+R +H + H H
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSH 802
E+P+ C +CGKSF NL HQR+H E+P+KC C K F+ L H R+H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTH------TGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 803 LNERPHVCPHCSKSFVEHTCMIKHIR 828
E+P+ CP C KSF + +H R
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQR 81
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYC 383
KP+ C CGK+F + L H + H G Y C C F+ LQ+H + H+ ++PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 384 CSVCMKTFARKEHLENHTRCH 404
C C K+F+R +HL H R H
Sbjct: 63 CPECGKSFSRSDHLSRHQRTH 83
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCA 357
+ C CGK F + H+R HT KP+ C CGK+F ++L H + H G Y C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 358 VCFHVFANEESLQRHTKRH 376
C F+ + L RH + H
Sbjct: 65 ECGKSFSRSDHLSRHQRTH 83
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 776 LERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
+E+P+KC C K F+ +L H R+H E+P+ CP C KSF + + + KH R
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR 53
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQ---HT 629
+G S +C C K F K +L H R+HTGE P++C C K + RK++L+ H + +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 630 GESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNH-IRLHTGES 688
E CS C+++F R+ L H+ HTGE P+KC CS+ F +K+ L +H I+LH+G S
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 4/120 (3%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANH-MRSHTN- 490
+G + C C K F K + H HTGE P C CGK Y RKE+L H R+ N
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 491 -DTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNH-VRQHTGES 548
+ F C +C ++F R+ H++ HTGE P++C CS+ F +K+ L +H ++ H+G S
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+G + C C K F K +L H R+HTGE P +C C K + RKE+L+ H ++ +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 577 PHK---CNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNH-VRQHTGES 632
+ C+ C ++F R+ L H+ HTGE PY+C C + F +K L +H ++ H+G S
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVM---WHT 461
+G + +C C K F K ++ H RKHTGE P C C K + RKE+ + H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 462 GETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIM-WHTG 518
E C VC + + R+ L HM SHT + P+KC C++ F +K+ +H++ H+G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
+G + C C K FL K +L H+R HTGE+PF C CGK + K NLL H+ +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNHT 832
E + F C VC + F + L H+ SH E P+ C CS+ F++ + H+ K H+
Sbjct: 63 SEQV---FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVR---LHT 657
+G + +C C K F K +L H R+HTGE P +C C + + RK++L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 658 GESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHL-KQHAG 714
E C C ++F R+ L H+ HTGE P+KC C + F +K+ L +H+ K H+G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHA--- 713
+G S +C C K F K +L H R HTGE P +C C K + RKE+L H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 714 GETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFH 764
E C++C + F ++ L H SHTGE P+ C+ C + F K +L H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 64/139 (46%), Gaps = 32/139 (23%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVC 359
C C K F +Y + VH R HT KPF C CGK +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCY------------------------ 45
Query: 360 FHVFANEESLQRHTKRHSIDRP---YCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCG 416
+E+L H R+ ++R + CSVC +TF R+ L H HTGE PYKC C
Sbjct: 46 ----FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCS 101
Query: 417 KNFSRKEHMVNH-VRKHTG 434
+ F +K+ + +H ++ H+G
Sbjct: 102 QQFMQKKDLQSHMIKLHSG 120
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 350 GGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTR---CHTG 406
G S C C F ++ L+ H ++H+ ++P+ C C K + RKE+L H +
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVM-WHTG 462
E + C C + F R+ + H+ HTGE P++C C + F +K+ +H++ H+G
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 299 TCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSH 344
TC +C + F R ++ +H HT P+ C C + F + +L SH
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 548 SPHKCNY--CAKSFTRKEHLVNHVRQHTGDSPHKCNY--CAKSFTRKEHLVNHVRQHTGE 603
+ H C+Y C K++T+ HL H+R HTG+ P+ C++ C F R + L H R+HTG
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 604 TPYQCQYCPKAFSRKDHLVNHVRQH 628
P+QCQ C +AFSR DHL H+++H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 576 SPHKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNHVRQHTGE 631
+ H C+Y C K++T+ HL H+R HTGE PY C + C F+R D L H R+HTG
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 632 SPHKCSYCKQSFTRKDHLNNHVRLH 656
P +C C ++F+R DHL H++ H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 387 CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHVRKHTGETPHRCEICK 444
C KT+ + HL+ H R HTGE PY C + CG F+R + + H RKHTG P +C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 445 KAFTRKEHYVNHVMWH 460
+AF+R +H H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 632 SPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHF--CSKSFTRKEHLNNHIRLHTGE 687
+ H C Y C +++T+ HL H+R HTGE P+ C + C F R + L H R HTG
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 688 SPHKCDFCLKTFTRKEHLTNHLKQH 712
P +C C + F+R +HL H+K+H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 499 CTKSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLNHVRQHTGESPHKCNYCA 556
C K++T+ H H+ HTGE P+ CD+ C F R + L H R+HTG P +C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 557 KSFTRKEHLVNHVRQH 572
++F+R +HL H+++H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 688 SPHKCDF--CLKTFTRKEHLTNHLKQHAGETEHVCNI--CSKPFLKKEHLVNHSRSHTGE 743
+ H CD+ C KT+T+ HL HL+ H GE + C+ C F + + L H R HTG
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 744 RPFACTDCGKSFPLKGNLLFHQRSH 768
RPF C C ++F +L H + H
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 443 CKKAFTRKEHYVNHVMWHTGETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICT 500
C K +T+ H H+ HTGE P+ C CG K+ R + L H R HT PF+C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 501 KSFTRKEHFTNHIMWH 516
++F+R +H H+ H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 357 AVCFHVFANEESLQRHTKRHSIDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQY 414
A C + L+ H + H+ ++PY C C FAR + L H R HTG P++CQ
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 415 CGKNFSRKEHMVNHVRKH 432
C + FSR +H+ H+++H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 296 GNHTCDL--CGKFFPYRYQMIVHRRYHTERKPFTCHV--CGKAFDFQAELMSHGKCHLGG 351
HTCD CGK + + H R HT KP+ C CG F EL H + H G
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 64
Query: 352 SMYTCAVCFHVFANEESLQRHTKRH 376
+ C C F+ + L H KRH
Sbjct: 65 RPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 751 CGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDV--CPKDFTCKGHLVSHLRSHLNERPH 808
CGK++ +L H R+H E+P+ CD C F L H R H RP
Sbjct: 14 CGKTYTKSSHLKAHLRTH------TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 67
Query: 809 VCPHCSKSFVEHTCMIKHIRK 829
C C ++F + H+++
Sbjct: 68 QCQKCDRAFSRSDHLALHMKR 88
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 782 CDV--CPKDFTCKGHLVSHLRSHLNERPHVCPH--CSKSFVEHTCMIKHIRK 829
CD C K +T HL +HLR+H E+P+ C C F + +H RK
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 60
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 4/85 (4%)
Query: 548 SPHKCNY--CAKSFTRKEHLVNHVRQHTGDSPHKCNY--CAKSFTRKEHLVNHVRQHTGE 603
+ H C+Y C K++T+ HL H+R HTG+ P+ C++ C F R + L H R+HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 604 TPYQCQYCPKAFSRKDHLVNHVRQH 628
P+QCQ C +AFSR DHL H+++H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 576 SPHKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNHVRQHTGE 631
+ H C+Y C K++T+ HL H+R HTGE PY C + C F+R D L H R+HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 632 SPHKCSYCKQSFTRKDHLNNHVRLH 656
P +C C ++F+R DHL H++ H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 387 CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHVRKHTGETPHRCEICK 444
C KT+ + HL+ H R HTGE PY C + CG F+R + + H RKHTG P +C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 445 KAFTRKEHYVNHVMWH 460
+AF+R +H H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 632 SPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHF--CSKSFTRKEHLNNHIRLHTGE 687
+ H C Y C +++T+ HL H+R HTGE P+ C + C F R + L H R HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 688 SPHKCDFCLKTFTRKEHLTNHLKQH 712
P +C C + F+R +HL H+K+H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 499 CTKSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLNHVRQHTGESPHKCNYCA 556
C K++T+ H H+ HTGE P+ CD+ C F R + L H R+HTG P +C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 557 KSFTRKEHLVNHVRQH 572
++F+R +HL H+++H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 688 SPHKCDF--CLKTFTRKEHLTNHLKQHAGETEHVCNI--CSKPFLKKEHLVNHSRSHTGE 743
+ H CD+ C KT+T+ HL HL+ H GE + C+ C F + + L H R HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 744 RPFACTDCGKSFPLKGNLLFHQRSH 768
RPF C C ++F +L H + H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 443 CKKAFTRKEHYVNHVMWHTGETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICT 500
C K +T+ H H+ HTGE P+ C CG K+ R + L H R HT PF+C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 501 KSFTRKEHFTNHIMWH 516
++F+R +H H+ H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 357 AVCFHVFANEESLQRHTKRHSIDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQY 414
A C + L+ H + H+ ++PY C C FAR + L H R HTG P++CQ
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 415 CGKNFSRKEHMVNHVRKH 432
C + FSR +H+ H+++H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 296 GNHTCDL--CGKFFPYRYQMIVHRRYHTERKPFTCHV--CGKAFDFQAELMSHGKCHLGG 351
HTCD CGK + + H R HT KP+ C CG F EL H + H G
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 352 SMYTCAVCFHVFANEESLQRHTKRH 376
+ C C F+ + L H KRH
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 751 CGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDV--CPKDFTCKGHLVSHLRSHLNERPH 808
CGK++ +L H R+H E+P+ CD C F L H R H RP
Sbjct: 13 CGKTYTKSSHLKAHLRTH------TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF 66
Query: 809 VCPHCSKSFVEHTCMIKHIRK 829
C C ++F + H+++
Sbjct: 67 QCQKCDRAFSRSDHLALHMKR 87
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 782 CDV--CPKDFTCKGHLVSHLRSHLNERPHVCPH--CSKSFVEHTCMIKHIRK 829
CD C K +T HL +HLR+H E+P+ C C F + +H RK
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F+R + L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 436 TPHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 82.8 bits (203), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FSR D L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F+R + L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F+R D L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETE 717
P CD C + F R + H K H + +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FSR + + H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C ++++R + L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F+R + L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F+R + L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F + + H++ H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F+R + T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F+R + L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F+R + H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ + L RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F+R + LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQN 772
PFAC CG+ F H + H +Q
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F EL H + H G + C +C F+ + L H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F + + L H R HTG++PF C C ++F +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F L H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 55
Query: 801 SHLNERPHVCPHCSKSFV 818
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFA 73
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F ++ H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FSR D L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 379 DRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+RPY C V C + F+R + L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 437 PHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F+R + L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F+R D L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQH 712
P CD C + F R + H K H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FSR + + H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C ++++R + L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F+R + L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F+R + L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 717 EHVCNICSKPFLKKEHLVNHSRSH 740
C+IC + F + + H++ H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F+R + T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F+R + L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F+R + H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ + L RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 64 CDICGRKFARSDERKRHTKIH 84
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F+R + LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQ 771
PFAC CG+ F H + H +Q
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F EL H + H G + C +C F+ + L H + H+ ++P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 62 FACDICGRKFARSDERKRHTKIH 84
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F + + L H R HTG++PF C C ++F +L H R+H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 56
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
E+PF CD+C + F H + HL +
Sbjct: 57 --TGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F L H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 54
Query: 801 SHLNERPHVCPHCSKSFV 818
+H E+P C C + F
Sbjct: 55 THTGEKPFACDICGRKFA 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F ++ H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 70
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 71 FARSDERKRHTKIH 84
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 36 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 85
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FSR D L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 379 DRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+RPY C V C + F+R + L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 437 PHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F+R + L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F+R D L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQH 712
P CD C + F R + H K H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FSR + + H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C ++++R + L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F+R + L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F+R + L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSH 740
C+IC + F + + H++ H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F+R + T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F+R + L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F+R + H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ + L RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F+R + LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSH 768
PFAC CG+ F H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F EL H + H G + C +C F+ + L H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F L H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 55
Query: 801 SHLNERPHVCPHCSKSFVE 819
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFAR 74
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F + + L H R HTG++PF C C ++F +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLN 804
E+PF CD+C + F H + HL
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F ++ H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F+R L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 436 TPHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F+R L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FSR L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FSR + H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F+R L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETE 717
P CD C + F R + H K H + +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C ++++R L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F+R L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F+R L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F + + H++ H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F+R T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F+R L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F+R H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ L RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F+R LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQN 772
PFAC CG+ F H + H +Q
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F A+L H + H G + C +C F+ + L H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F +L H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 55
Query: 801 SHLNERPHVCPHCSKSFVE 819
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFAR 74
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F + L H R HTG++PF C C ++F +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F + H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F+R L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 436 TPHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F+R L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FSR L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FSR + H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F+R L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETE 717
P CD C + F R + H K H + +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C ++++R L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F+R L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F+R L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F + + H++ H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F+R T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F+R L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F+R H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ L RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F+R LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQN 772
PFAC CG+ F H + H +Q
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F AEL H + H G + C +C F+ + L H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F L H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 55
Query: 801 SHLNERPHVCPHCSKSFV 818
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFA 73
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F + L H R HTG++PF C C ++F +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F ++ H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 15/151 (9%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHK--------CNYCAKSFTRKEHLVNHVR 570
ET R D CS+ F +E L++H+ K C+ + F + LV H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 571 QHTGDSPHKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNHV- 625
+HTG+ PHKC + C KS++R E+L H+R HTGE PY C++ C KAFS H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 626 RQHTGESPHKCSY--CKQSFTRKDHLNNHVR 654
R H+ E P+ C C + +T L HV+
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 21/160 (13%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQ---HAGETEHVCNI--CSK---PFLKKEHLVNHSR 738
E+ + D C + F +E L +H+ H E VC+ CS+ PF + LV H R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 739 SHTGERPFACT--DCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCD--VCPKDFTCKGH 794
HTGE+P CT C KS+ NL H RSH E+P+ C+ C K F+
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH------TGEKPYMCEHEGCSKAFSNASD 114
Query: 795 LVSHL-RSHLNERPHVC--PHCSKSFVEHTCMIKHIRKNH 831
H R+H NE+P+VC P C+K + + + + KH++ H
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHK--------CSYCKQSFTRKDHLNNHVR 654
ET + C + F ++ LV+H+ K CS + F + L H+R
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 655 LHTGESPHKCHF--CSKSFTRKEHLNNHIRLHTGESPHKC--DFCLKTFTRKEHLTNHL- 709
HTGE PHKC F C KS++R E+L H+R HTGE P+ C + C K F+ H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 710 KQHAGETEHVCNI--CSKPFLKKEHLVNHSRS 739
+ H+ E +VC + C+K + L H ++
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 23/146 (15%)
Query: 331 CGKAFDFQAELM-------SHGK-----CHLGGSMYTCAVCFHVFANEESLQRHTKRHSI 378
C + FD Q +L+ HG+ CH GG C+ F + L H +RH+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----CSRELRPFKAQYMLVVHMRRHTG 64
Query: 379 DRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHV-RKHT 433
++P+ C+ C K+++R E+L+ H R HTGE PY C++ C K FS H R H+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 434 GETPHRCEI--CKKAFTRKEHYVNHV 457
E P+ C++ C K +T HV
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEIC--------KKAFTRKEHYVNHVM 458
ET + C + F +E +V+H+ + +C + F + V H+
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 459 WHTGETPHVC--QVCGKKYTRKEHLANHMRSHTNDTPFKC--EICTKSFTRKEHFTNHI- 513
HTGE PH C + C K Y+R E+L H+RSHT + P+ C E C+K+F+ H
Sbjct: 61 RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 514 MWHTGETPHRCDF--CSKTFTRKEHLLNHVR 542
H+ E P+ C C+K +T L HV+
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 307 FPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSHGKCHLGGSMYTC--AVCFHV 362
F +Y ++VH R HT KP C C K++ L +H + H G Y C C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 363 FANEESLQRHTKR-HSIDRPYCCSV--CMKTFARKEHLENHTR 402
F+N +H R HS ++PY C + C K + L H +
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 299 TCDLCGKFFPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSH-GKCHLGGSMYT 355
T + C K + + H R HT KP+ C C KAF ++ H + H Y
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Query: 356 CAV--CFHVFANEESLQRHTK 374
C + C + + SL++H K
Sbjct: 131 CKLPGCTKRYTDPSSLRKHVK 151
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 79.7 bits (195), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F+ +L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 436 TPHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F+ +L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FS +L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FS ++ H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F+ +L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETE 717
P CD C + F R + H K H + +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C ++++ +L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F+ +L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F+ +L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F + + H++ H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F++ +L RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F+ + T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F+ +L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F+ + H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F+ +LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQ 771
PFAC CG+ F H + H +Q
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQ 88
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F + L H + H G + C +C F+ + L H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F NL H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 55
Query: 801 SHLNERPHVCPHCSKSFVE 819
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFAR 74
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F +L H R HTG++PF C C ++F +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F + H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F++ L H R HTG+ P++C+ C +NFSR +H+ H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 436 TPHRCEICKKAFTRKEHYVNHVMWH 460
P C+IC + F R + H H
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIH 85
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F++ L H+R HTG+ P+QC+ C + FSR DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLH 656
P C C + F R D H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FS+ L H+R HTG+ P +C C ++F+R DHL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLH 684
P C C + F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F++ L H+R+HTG+ P +C C ++F+R +HL HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETE 717
P CD C + F R + H K H + +
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FS+ + H+R HTG+ P +C IC + F+R +H H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P C +CG+K+ R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C +++++ L H+R HT PF+C IC ++F+R +H T HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQH 544
P CD C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F++ L H+R HTG P +C C ++F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQH 628
P+ C C + F+R D H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F++ L HIR+HTG+ P +C C++ F+R +HLT H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F + + H++ H ++
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ SL RH + H+ +P+ C +CM+ F+R +HL H R HTGE P+
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 412 CQYCGKNFSRKEHMVNHVRKH 432
C CG+ F+R + H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F++ T HI HTG+ P +C C + F+R +HL H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQH 572
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F++ L H+R HTG+ P +C C ++F+R +HL H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQH 600
P C+ C + F R + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F++ H+ HTG+ P C++C + ++R +HL H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F R + H H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F++ LT H++ H G+ C IC + F + +HL H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQN 772
PFAC CG+ F H + H +Q
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F G+L H R H Q +PF+C +C ++F+ HL +H+R
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIR 55
Query: 801 SHLNERPHVCPHCSKSFVE 819
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFAR 74
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F L H + H G + C +C F+ + L H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FAR + + HT+ H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F + L H R HTG++PF C C ++F +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F + H R HT +KPF C +C + F L +H + H G + C +C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + +RHTK H
Sbjct: 72 FARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F E H K HL
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHL 86
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 550 HKCNY--CAKSFTRKEHLVNHVRQHTGDSPHKCNY--CAKSFTRKEHLVNHVRQHTGETP 605
H C+Y C K +T+ HL H+R HTG+ P+KC + C F R + L H R+HTG P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 606 YQCQYCPKAFSRKDHLVNHVRQH 628
+QC C ++FSR DHL H+++H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 578 HKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNHVRQHTGESP 633
H C+Y C K +T+ HL H+R HTGE PY+C + C F+R D L H R+HTG P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 634 HKCSYCKQSFTRKDHLNNHVRLH 656
+C C +SF+R DHL H++ H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 608 CQY--CPKAFSRKDHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHK 663
C Y C K +++ HL H+R HTGE P+KC++ C F R D L H R HTG P +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 664 CHFCSKSFTRKEHLNNHIRLH 684
C C++SF+R +HL H++ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKRH 98
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 634 HKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHF--CSKSFTRKEHLNNHIRLHTGESP 689
H C Y C + +T+ HL H+R HTGE P+KC + C F R + L H R HTG P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 690 HKCDFCLKTFTRKEHLTNHLKQH 712
+C C ++F+R +HL H+K+H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRH 98
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 387 CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHVRKHTGETPHRCEICK 444
C K + + HL+ H R HTGE PYKC + C F+R + + H RKHTG P +C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 445 KAFTRKEHYVNHVMWH 460
++F+R +H H+ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 499 CTKSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLNHVRQHTGESPHKCNYCA 556
CTK +T+ H H+ HTGE P++C + C F R + L H R+HTG P +C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 557 KSFTRKEHLVNHVRQH 572
+SF+R +HL H+++H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 471 CGKKYTRKEHLANHMRSHTNDTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCS 528
C K YT+ HL H+R+HT + P+KC E C F R + T H HTG P +C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 529 KTFTRKEHLLNHVRQH 544
++F+R +HL H+++H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 412 CQY--CGKNFSRKEHMVNHVRKHTGETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHV 467
C Y C K +++ H+ H+R HTGE P++C E C F R + H HTG P
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 468 CQVCGKKYTRKEHLANHMRSHTN 490
C VC + ++R +HLA HM+ H N
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQN 100
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 443 CKKAFTRKEHYVNHVMWHTGETPHVC--QVCGKKYTRKEHLANHMRSHTNDTPFKCEICT 500
C K +T+ H H+ HTGE P+ C + C ++ R + L H R HT PF+C +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 501 KSFTRKEHFTNHIMWH 516
+SF+R +H H+ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 690 HKCDF--CLKTFTRKEHLTNHLKQHAGETEHVCNI--CSKPFLKKEHLVNHSRSHTGERP 745
H CD+ C K +T+ HL HL+ H GE + C C F + + L H R HTG +P
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP 75
Query: 746 FACTDCGKSFPLKGNLLFHQRSHR 769
F C C +SF +L H + H+
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 359 CFHVFANEESLQRHTKRHSIDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCG 416
C V+ L+ H + H+ ++PY C+ C FAR + L H R HTG P++C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 417 KNFSRKEHMVNHVRKH 432
++FSR +H+ H+++H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 718 HVCNI--CSKPFLKKEHLVNHSRSHTGERPFACT--DCGKSFPLKGNLLFHQRSHRKQNG 773
H C+ C+K + K HL H R+HTGE+P+ CT C F L H R H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH----- 70
Query: 774 EVLERPFKCDVCPKDFTCKGHLVSHLRSHLN 804
+PF+C VC + F+ HL H++ H N
Sbjct: 71 -TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 291 DLPVMGNHTCDL--CGKFFPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSHGK 346
DL H CD C K + + H R HT KP+ C C F EL H +
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 347 CHLGGSMYTCAVCFHVFANEESLQRHTKRH 376
H G + C VC F+ + L H KRH
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 782 CDV--CPKDFTCKGHLVSHLRSHLNERPHVCPH--CSKSFVEHTCMIKHIRK 829
CD C K +T HL +HLR+H E+P+ C C F + +H RK
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQC 608
PHKC C K F+RK+ L H+R HTG P+KC C + L H+R H+ E P++C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 609 QYCPKAFSRKDHLVNHVRQHTGES 632
Q CP A L H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKC 692
PHKC C + F+RKD L H+R HTG P+KC C + LN H+R+H+ E P KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 693 DFCLKTFTRKEHLTNHLKQHAGET 716
C LT HL+ H G++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKC 664
P++C+ C K FSRKD L H+R HTG P+KC C + LN H+R+H+ E P KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 665 HFCSKSFTRKEHLNNHIRLHTGES 688
C + L H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKC 636
PHKC C K F+RK+ L H+R HTG PY+C+ C A + L H+R H+ E P KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 637 SYCKQSFTRKDHLNNHVRLHTGES 660
C + L H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 437 PHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKC 496
PH+CE+C K F+RK+ H+ HTG P+ C+ C L H+R H+++ PFKC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 497 EICTKSFTRKEHFTNHIMWHTGET 520
+IC + T H+ HTG++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRC 524
PH C+VCGK ++RK+ L HMR HT P+KC+ C + H+ H+ E P +C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 525 DFCSKTFTRKEHLLNHVRQHTGES 548
C L H+R HTG+S
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%)
Query: 381 PYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRC 440
P+ C VC K F+RK+ L+ H RCHTG PYKC+ C + + H+R H+ E P +C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 441 EICKKAFTRKEHYVNHVMWHTGET 464
+IC A H+ HTG++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVC 468
P+KC+ CGK FSRK+ + H+R HTG P++C+ C A H+ H+ E P C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 469 QVCGKKYTRKEHLANHMRSHTNDT 492
Q+C L H+RSHT D+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 45/90 (50%)
Query: 487 SHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTG 546
S + P KCE+C K F+RK+ H+ HTG P++C C L H+R H+
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P KC C + L H+R HTGDS
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKC 580
PH+C+ C K F+RK+ L H+R HTG P+KC C + L H+R H+ + P KC
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 581 NYCAKSFTRKEHLVNHVRQHTGET 604
C + L H+R HTG++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 41/83 (49%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVC 720
PHKC C K F+RK+ L H+R HTG P+KC C L HL+ H+ E C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 721 NICSKPFLKKEHLVNHSRSHTGE 743
IC L H RSHTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%)
Query: 325 PFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCC 384
P C VCGK F + +L +H +CH G Y C C + A+ SL +H + HS +RP+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 385 SVCMKTFARKEHLENHTRCHTGET 408
+C L H R HTG++
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDS 91
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%)
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFAC 748
PHKC+ C K F+RK+ L H++ H G + C C L H R H+ ERPF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 749 TDCGKSFPLKGNLLFHQRSHRKQNG 773
C + L H RSH +G
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSG 92
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 718 HVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLE 777
H C +C K F +K+ L H R HTG +P+ C C + +L H R H E
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD------E 62
Query: 778 RPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
RPFKC +CP L HLRSH +
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 356 CAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYC 415
C VC F+ ++ L+ H + H+ +PY C C A L H R H+ E P+KCQ C
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Query: 416 GKNFSRKEHMVNHVRKHTGET 436
+ H+R HTG++
Sbjct: 71 PYASRNSSQLTVHLRSHTGDS 91
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLN 804
P C CGK F K L H R H +P+KC C L HLR H +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH------TGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 805 ERP---HVCPHCSKSFVEHT 821
ERP +CP+ S++ + T
Sbjct: 62 ERPFKCQICPYASRNSSQLT 81
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 779 PFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
P KC+VC K F+ K L +H+R H +P+ C C + + + + KH+R
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR 57
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 384 CSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEIC 443
C +C K+F R L H H+ PY CQYCGK F +K M H HTGE PH+C++C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 444 KKAFTRKEHYVNHVMWHTG 462
KAF++ + + H HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCN 553
F C+IC KSF R + H++ H+ P+ C +C K F +K + H HTGE PHKC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 554 YCAKSFTRKEHLVNHVRQHTG 574
C K+F++ +L+ H R+HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQ 413
+ C +C F +L H HS RPY C C K F +K ++ HT HTGE P+KCQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 414 YCGKNFSRKEHMVNHVRKHTG 434
CGK FS+ +++ H RKHTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%)
Query: 552 CNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYC 611
C C KSF R L H+ H+ P+ C YC K F +K + H HTGE P++CQ C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 612 PKAFSRKDHLVNHVRQHTG 630
KAFS+ +L+ H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 468 CQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFC 527
C++CGK + R L+ H+ H++ P+ C+ C K F +K H HTGE PH+C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 528 SKTFTRKEHLLNHVRQHTG 546
K F++ +L+ H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 44/79 (55%)
Query: 580 CNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYC 639
C C KSF R L H+ H+ PY CQYC K F +K + H HTGE PHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 640 KQSFTRKDHLNNHVRLHTG 658
++F++ +L H R HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYC 583
C C K+F R L H+ H+ P+ C YC K F +K + H HTG+ PHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 584 AKSFTRKEHLVNHVRQHTG 602
K+F++ +L+ H R+HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQ 469
+ C+ CGK+F R + H+ H+ P+ C+ C K F +K H HTGE PH CQ
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 470 VCGKKYTRKEHLANHMRSHTN 490
VCGK +++ +L H R HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCH 665
+ C+ C K+F R L H+ H+ P+ C YC + F +K + H +HTGE PHKC
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 666 FCSKSFTRKEHLNNHIRLHTG 686
C K+F++ +L H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 636 CSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFC 695
C C +SF R L+ H+ +H+ P+ C +C K F +K + H +HTGE PHKC C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 696 LKTFTRKEHLTNHLKQHAG 714
K F++ +L H ++H G
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%)
Query: 664 CHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNIC 723
C C KSF R L+ H+ +H+ P+ C +C K F +K + H H GE H C +C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 724 SKPFLKKEHLVNHSRSHTG 742
K F + +L+ HSR HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%)
Query: 440 CEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEIC 499
C+IC K+F R H++ H+ P+ CQ CGK++ +K + H HT + P KC++C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 500 TKSFTRKEHFTNHIMWHTG 518
K+F++ + H HTG
Sbjct: 64 GKAFSQSSNLITHSRKHTG 82
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%)
Query: 692 CDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDC 751
C C K+F R L+ HL H+ + C C K F +K + H+ HTGE+P C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 752 GKSFPLKGNLLFHQRSH 768
GK+F NL+ H R H
Sbjct: 64 GKAFSQSSNLITHSRKH 80
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 326 FTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCS 385
F C +CGK+F + L +H H Y C C F + +++HT H+ ++P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 386 VCMKTFARKEHLENHTRCHTG 406
VC K F++ +L H+R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVC 359
C +CGK F + H H++ +P+ C CGK F ++++ H H G + C VC
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 360 FHVFANEESLQRHTKRHS 377
F+ +L H+++H+
Sbjct: 64 GKAFSQSSNLITHSRKHT 81
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 746 FACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
F C CGKSF L H H RP+ C C K F K + H H E
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSD------TRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 806 RPHVCPHCSKSFVEHTCMIKHIRK 829
+PH C C K+F + + +I H RK
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRK 79
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
C CGK F + M H HT KP C VCGKAF + L++H + H G
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F++K +L+ H+R+HTG+ P +C C ++F+++ LN HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 689 PHKCDFCLKTF----TRKEHLTNHLKQ 711
P CD C + F TR H HL+Q
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F++K +L+ H R HTG+ P++C+ C +NFS++ + H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 436 TPHRCEICKKAF----TRKEHYVNHV 457
P C+IC + F TR H H+
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKIHL 86
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FS+K +L H+R HTG+ P +C C ++F+++ LN H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 661 PHKCHFCSKSF----TRKEHLNNHIR 682
P C C + F TR H H+R
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLR 87
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FS+K ++ H+R HTG+ P +C IC + F+++ H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 465 PHVCQVCGKKY----TRKEHLANHMR 486
P C +CG+K+ TR H H+R
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLR 87
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C +++++K +L H+R HT PF+C IC ++F+++ HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 521 PHRCDFCSKTF----TRKEHLLNHVRQ 543
P CD C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F++K +L H+R HTG+ P +C C ++F+++ L H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 577 PHKCNYCAKSF----TRKEHLVNHVRQ 599
P C+ C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F++K +L+ HIR+HTG+ P +C C++ F+++ L H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F H++ H ++
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F++K +L H+R HTG+ P+QC+ C + FS++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 633 PHKCSYCKQSF----TRKDHLNNHVR 654
P C C + F TR H H+R
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLR 87
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F++K + HI HTG+ P +C C + F+++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 549 PHKCNYCAKSF----TRKEHLVNHVRQ 571
P C+ C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F++K +L H+R HTG P +C C ++F+++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 605 PYQCQYCPKAFS----RKDHLVNHVRQ 627
P+ C C + F+ R H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F++K + H+ HTG+ P C++C + ++++ L H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 493 PFKCEICTKSFTRKEHFTNHIMWH 516
PF C+IC + F T H H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F++K +L H++ H G+ C IC + F ++ L H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQ 771
PFAC CG+ F H + H +Q
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ + +L H + H+ +P+ C +CM+ F+++ L H R HTGE P+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 412 CQYCGKNFS----RKEHMVNHVRK 431
C CG+ F+ R H H+R+
Sbjct: 65 CDICGRKFATLHTRTRHTKIHLRQ 88
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F K NL H R H Q +PF+C +C ++F+ + L +H+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ------KPFQCRICMRNFSQQASLNAHIR 55
Query: 801 SHLNERPHVCPHCSKSFV 818
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFA 73
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F + + H R HT +KPF C +C + F QA L +H + H G + C +C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + RHTK H
Sbjct: 72 FATLHTRTRHTKIH 85
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F +K +L H R HTG++PF C C ++F + +L H R+H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F + L +H + H G + C +C F+ + SL H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FA HT+ H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + + H R HT KPF C +CG+ F H K HL
Sbjct: 37 CRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHL 86
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 631 ESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C C + F++K +L+ H+R+HTG+ P +C C ++F++ LN HIR HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 689 PHKCDFCLKTF----TRKEHLTNHLKQ 711
P CD C + F TR H HL+Q
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
++RPY C V C + F++K +L+ H R HTG+ P++C+ C +NFS+ + H+R HTGE
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 436 TPHRCEICKKAF----TRKEHYVNHV 457
P C+IC + F TR H H+
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKIHL 86
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 603 ETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E PY C + C + FS+K +L H+R HTG+ P +C C ++F++ LN H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 661 PHKCHFCSKSF----TRKEHLNNHIR 682
P C C + F TR H H+R
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLR 87
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 407 ETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E PY C + C + FS+K ++ H+R HTG+ P +C IC + F++ H+ HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 465 PHVCQVCGKKY----TRKEHLANHMR 486
P C +CG+K+ TR H H+R
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLR 87
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 463 ETPHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
E P+ C V C +++++K +L H+R HT PF+C IC ++F++ HI HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 521 PHRCDFCSKTF----TRKEHLLNHVRQ 543
P CD C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 519 ETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ C + C + F++K +L H+R HTG+ P +C C ++F++ L H+R HTG+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 577 PHKCNYCAKSF----TRKEHLVNHVRQ 599
P C+ C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 575 DSPHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+ P+ C C + F++K +L H+R HTG+ P+QC+ C + FS+ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 633 PHKCSYCKQSF----TRKDHLNNHVR 654
P C C + F TR H H+R
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLR 87
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 547 ESPHKC--NYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
E P+ C C + F++K +L H+R HTG P +C C ++F++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 605 PYQCQYCPKAFS----RKDHLVNHVRQ 627
P+ C C + F+ R H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 491 DTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ P+ C E C + F++K + HI HTG+ P +C C + F++ L H+R HTGE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 549 PHKCNYCAKSF----TRKEHLVNHVRQ 571
P C+ C + F TR H H+RQ
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 659 ESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C C + F++K +L+ HIR+HTG+ P +C C++ F++ L H++ H GE
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGER 744
C+IC + F H++ H ++
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 435 ETPHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C E C + F++K + H+ HTG+ P C++C + +++ L H+R+HT +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 493 PFKCEICTKSF----TRKEHFTNHI 513
PF C+IC + F TR H H+
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHL 86
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 687 ESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
E P+ C + C + F++K +L H++ H G+ C IC + F + L H R+HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 745 PFACTDCGKSF 755
PFAC CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYK 411
Y C V C F+ + +L H + H+ +P+ C +CM+ F++ L H R HTGE P+
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 412 CQYCGKNFS----RKEHMVNHVRK 431
C CG+ F+ R H H+R+
Sbjct: 65 CDICGRKFATLHTRDRHTKIHLRQ 88
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 743 ERPFAC--TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
ERP+AC C + F K NL H R H Q +PF+C +C ++F+ L H+R
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQ------KPFQCRICMRNFSQHTGLNQHIR 55
Query: 801 SHLNERPHVCPHCSKSFV 818
+H E+P C C + F
Sbjct: 56 THTGEKPFACDICGRKFA 73
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
+P+ C V C + F + L +H + H G + C +C F+ L +H + H+ ++P
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 382 YCCSVCMKTFARKEHLENHTRCH 404
+ C +C + FA + HT+ H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E + C + C + F +K +L H R HTG++PF C C ++F L H R+H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH---- 57
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+PF CD+C + F H + HL ++
Sbjct: 58 --TGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
C + F + + H R HT +KPF C +C + F L H + H G + C +C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRK 71
Query: 363 FANEESLQRHTKRH 376
FA + RHTK H
Sbjct: 72 FATLHTRDRHTKIH 85
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHL 349
C +C + F + H R HT KPF C +CG+ F H K HL
Sbjct: 37 CRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHL 86
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 350 GGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGET- 408
G S C +C +F + L RH HS ++PY C VC F RK+ + H R H G
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 409 -PYKCQYCGKNFSRKEHMVNHVRK-HTGET 436
PY CQ CGK FSR +H+ H+++ H+G +
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGE- 631
+G S C C K F HL H H+GE PY C C F RKD + HVR H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 632 -SPHKCSYCKQSFTRKDHLNNHVR-LHTGES 660
P+ C C + F+R DHLN H++ +H+G S
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+G + CEIC K F H H + H+GE P+ C VCG ++ RK+ ++ H+RSH
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 493 --PFKCEICTKSFTRKEHFTNHI-MWHTGET 520
P+ C+ C K F+R +H HI H+G +
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 489 TNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGE- 547
+ + CEIC K F H H + H+GE P+ C C F RK+ + HVR H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 548 -SPHKCNYCAKSFTRKEHLVNHVRQ-HTGDS 576
P+ C C K F+R +HL H++Q H+G S
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 384 CSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGET--PHRCE 441
C +C K F HL H H+GE PY C CG F RK+ M HVR H G P+ C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 442 ICKKAFTRKEHYVNHV-MWHTGET 464
C K F+R +H H+ H+G +
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
+G + C++CGK + HL H SH+ + P+ C +C F RK+ + H+ H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 521 --PHRCDFCSKTFTRKEHLLNHVRQ-HTGES 548
P+ C C K F+R +HL H++Q H+G S
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGD- 575
+G + C+ C K F HL H H+GE P+ C C F RK+ + HVR H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 576 -SPHKCNYCAKSFTRKEHLVNHVRQ-HTGET 604
P+ C C K F+R +HL H++Q H+G +
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+G + C+ CGK F H+ H H+GE P+ C +C F RK+ HV H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 465 --PHVCQVCGKKYTRKEHLANHMR 486
P++CQ CGK ++R +HL H++
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIK 86
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGE- 687
+G S C C + F HLN H H+GE P+ C C F RK+ ++ H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 688 -SPHKCDFCLKTFTRKEHLTNHLKQ-HAGETE 717
P+ C C K F+R +HL H+KQ H+G +
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
+G + C IC K F HL H SH+GE+P++C CG F K + +H RSH
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLR 800
G +P+ C C K F+ HL H++
Sbjct: 63 G----KPYICQSCGKGFSRPDHLNGHIK 86
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGE- 743
+G S C+ C K F HL H H+GE + C +C F +K+ + H RSH G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 744 -RPFACTDCGKSF 755
+P+ C CGK F
Sbjct: 63 GKPYICQSCGKGF 75
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 326 FTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRH--SIDRPYC 383
C +CGK F L H H G Y+C VC F ++ + H + H S+ +PY
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 384 CSVCMKTFARKEHLENHTR-CHTGET 408
C C K F+R +HL H + H+G +
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 741 TGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLR 800
+G AC CGK F +L H+ SH E+P+ C VC F K + H+R
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSG------EKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 801 SHLNE--RPHVCPHCSKSFVEHTCMIKHIRKNHT 832
SH +P++C C K F + HI++ H+
Sbjct: 57 SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYH--TERKPFTCHVCGKAFDFQAELMSH 344
++C +CG F + +M H R H + KP+ C CGK F L H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 555 CAKSFTRKEHLVNHV-RQHTGDSPHKCNYC--------AKSFTRKEHLVNHVRQHTGETP 605
C ++F+ LV HV +H G + C KSF K LVNH+R HTGE P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 606 YQCQY--CPKAFSRKDHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLHTGE 659
+ C + C K F+R ++L H R HTGE P KC + C + F H+ +HT +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 17/123 (13%)
Query: 527 CSKTFTRKEHLLNHV-RQHTGESPHKCNYC--------AKSFTRKEHLVNHVRQHTGDSP 577
C +TF+ L+ HV +H G + C KSF K LVNH+R HTG+ P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 578 HKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFS----RKDHLVNHVRQHT 629
C + C K F R E+L H R HTGE P++C++ C + F+ RK H+ H +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 630 GES 632
G S
Sbjct: 151 GPS 153
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 611 CPKAFSRKDHLVNHV-RQHTG---ESPHKCSYCK-----QSFTRKDHLNNHVRLHTGESP 661
C + FS LV HV +H G ++ H C + + +SF K L NH+R+HTGE P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 662 HKCHF--CSKSFTRKEHLNNHIRLHTGESPHKCDF--CLKTFT----RKEHLTNHLKQHA 713
C F C K F R E+L H R HTGE P KC+F C + F RK+H+ H +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 714 G 714
G
Sbjct: 151 G 151
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 415 CGKNFSRKEHMVNHV-RKHTGETPHRCEIC--------KKAFTRKEHYVNHVMWHTGETP 465
C + FS +V HV +H G +C K+F K VNH+ HTGE P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 466 HVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEI--CTKSFTRKEHFTNHIMWHTGE 519
C CGK + R E+L H R+HT + PFKCE C + F H+ HT +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 501 KSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLNHVRQHTGESPHKCNY--CA 556
KSF K NHI HTGE P C F C K F R E+L H R HTGE P KC + C
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129
Query: 557 KSFTRKEHLVNHVRQHTGD 575
+ F H+ HT D
Sbjct: 130 RRFANSSDRKKHMHVHTSD 148
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 363 FANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHL----ENHTRCHTGETPYKCQYCGKN 418
+ +E L R K S DR + + T EH+ +N+ C+ E P + GK+
Sbjct: 18 WIDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE----GKS 71
Query: 419 FSRKEHMVNHVRKHTGETPHRCEI--CKKAFTRKEHYVNHVMWHTGETPHVCQV--CGKK 474
F K +VNH+R HTGE P C C K F R E+ H HTGE P C+ C ++
Sbjct: 72 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR 131
Query: 475 YTRKEHLANHMRSHTND 491
+ HM HT+D
Sbjct: 132 FANSSDRKKHMHVHTSD 148
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 17/121 (14%)
Query: 331 CGKAFDFQAELMSHGKC-HLGGSMYTCAVCFH--------VFANEESLQRHTKRHSIDRP 381
C + F EL++H H+GG VC+ F + L H + H+ ++P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 382 YCCSV--CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFS----RKEHMVNHVRKHT 433
+ C C K FAR E+L+ H R HTGE P+KC++ C + F+ RK+HM H +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 434 G 434
G
Sbjct: 151 G 151
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 293 PVMGNHTC--DLC---GKFFPYRYQMIVHRRYHTERKPFTCHV--CGKAFDFQAELMSHG 345
P NH C + C GK F +Y+++ H R HT KPF C CGK F L H
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Query: 346 KCHLGGSMYTCAV--CFHVFANEESLQRHTKRHSIDR 380
+ H G + C C FAN ++H H+ D+
Sbjct: 113 RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 667 CSKSFTRKEHLNNHIRL-HTGESPHKCDFCL--------KTFTRKEHLTNHLKQHAGETE 717
C ++F+ L H+ + H G C K+F K L NH++ H GE
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 718 HVCNI--CSKPFLKKEHLVNHSRSHTGERPFAC 748
C C K F + E+L H R+HTGE+PF C
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 748 CTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDV--CPKDFTCKGHLVSHLRSHLNE 805
C GKSF K L+ H R H E+PF C C K F +L H R+H E
Sbjct: 65 CPREGKSFKAKYKLVNHIRVH------TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE 118
Query: 806 RPHVCPH--CSKSFVEHTCMIKHI 827
+P C C + F + KH+
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHM 142
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 785 CP---KDFTCKGHLVSHLRSHLNERPHVCPH--CSKSFVEHTCMIKHIR 828
CP K F K LV+H+R H E+P CP C K F + H R
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR 113
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQ 469
+ C++CG++F++ +++ H R HT E P+ C+IC KAF R++H +H H+ E P CQ
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 470 VCGKKYTRKEHLANHMRSH 488
CGK + + LA H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLH 96
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 580 CNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYC 639
C +C + FT+ +L+ H R HT E PY C C KAF R+DHL +H H+ E P KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 640 KQSFTRKDHLNNHVRLHTGES 660
+ F + L H LH S
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCH 665
+ C++C + F++ +L+ H R HT E P+ C C ++F R+DHL +H +H+ E P KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 666 FCSKSFTRKEHLNNHIRLHTGES 688
C K F + L H LH S
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTS 100
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 467 VCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDF 526
+C+ CG+ +T+ +L H R+HT++ P+ C+IC K+F R++H +H H+ E P +C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE 78
Query: 527 CSKTFTRKEHLLNHVRQHTGES 548
C K F + L H H S
Sbjct: 79 CGKGFCQSRTLAVHKTLHMQTS 100
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 552 CNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYC 611
C +C + FT+ +L+ H R HT + P+ C+ C K+F R++HL +H H+ E P++CQ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 612 PKAFSRKDHLVNHVRQHTGES 632
K F + L H H S
Sbjct: 80 GKGFCQSRTLAVHKTLHMQTS 100
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYC 583
C FC + FT+ +LL H R HT E P+ C+ C K+F R++HL +H H+ + P KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 584 AKSFTRKEHLVNH 596
K F + L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQ 413
+ C C F +L H + H+ +RPY C +C K F R++HL +H H+ E P+KCQ
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 414 YCGKNFSRKEHMVNH 428
CGK F + + H
Sbjct: 78 ECGKGFCQSRTLAVH 92
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 692 CDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDC 751
C FC + FT+ +L H + H E + C+IC K F +++HL +H H+ E+PF C +C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 752 GKSFPLKGNLLFHQRSH 768
GK F L H+ H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCN 553
F C+ C + FT+ + H HT E P+ CD C K F R++HL +H H+ E P KC
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 554 YCAKSFTRKEHLVNHVRQHTGDS 576
C K F + L H H S
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTS 100
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 636 CSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFC 695
C +C + FT+ +L H R HT E P+ C C K+F R++HL +H +H+ E P KC C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 696 LKTFTRKEHLTNHLKQH 712
K F + L H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 440 CEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEIC 499
C+ C + FT+ + + H HT E P+ C +C K + R++HL +H H+ + PFKC+ C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 500 TKSFTRKEHFTNHIMWH 516
K F + H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 664 CHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNIC 723
C FC + FT+ +L H R HT E P+ CD C K F R++HL +H H+ E C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 724 SKPFLKKEHLVNHSRSH 740
K F + L H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSH 802
++ F C CG+ F NLL H+R+H ERP+ CD+C K F + HL H H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTH------TDERPYTCDICHKAFRRQDHLRDHRYIH 68
Query: 803 LNERPHVCPHCSKSFVEHTCMIKH 826
E+P C C K F + + H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVH 92
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVL 776
E +C C + F K +L+ H R+HT ERP+ C C K+F + +L H+ H K
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK------ 70
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLN 804
E+PFKC C K F L H H+
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHR 439
+ + C C + F + +L H R HT E PY C C K F R++H+ +H H+ E P +
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 440 CEICKKAFTRKEHYVNHVMWH 460
C+ C K F + H H
Sbjct: 76 CQECGKGFCQSRTLAVHKTLH 96
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVC 359
C CG+ F Y +++H R HT+ +P+TC +C KAF Q L H H + C C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 360 FHVFANEESLQRHTKRH 376
F +L H H
Sbjct: 80 GKGFCQSRTLAVHKTLH 96
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPY 382
+K F C CG+ F L+ H + H YTC +C F ++ L+ H HS ++P+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 383 CCSVCMKTFARKEHLENHTRCH 404
C C K F + L H H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCA 357
+TCD+C K F + + HR H++ KPF C CGK F L H H+ S T A
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+G+ + C+ C K+FT K H+ H G P+ C VCGKK+ K HL HM+ HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 493 PFKCEICTKSFTRKEHFTNHI 513
P++C IC K F ++ F H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GD + C C KSFT K H+ H G PY C C K F K HLV H++ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 633 PHKCSYCKQSFTRKDHLNNHV 653
P++C+ C + F +D + HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G+ + C C KSFT K H+ H G P+ C C K F K HLV H++ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 605 PYQCQYCPKAFSRKDHLVNHV 625
PY+C C K F +D HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
S D+ Y C C K+F K + H H G PY C CGK F K H+V H++ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 437 PHRCEICKKAFTRKEHYVNHV 457
P+ C IC K F ++ + HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 489 TNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+ D + C+ C KSFT K H+ H G P+ C C K F K HL+ H++ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 549 PHKCNYCAKSFTRKEHLVNHV 569
P++CN CAK F ++ HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%)
Query: 527 CSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKS 586
C K+FT K H+ H G P+ C C K F K HLV H++ HTG P++CN CAK
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 587 FTRKEHLVNHV 597
F ++ HV
Sbjct: 75 FMWRDSFHRHV 85
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+G+ Y CQ CGK+F+ K H+ H G P+ C +C K F K H V H+ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSF 503
P+ C +C K++ ++ H+ S CTKS+
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTS-----------CTKSY 92
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+G+ Y CQ C K+F+ K H+ H G P+ C C + F K HL H+++HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 661 PHKCHFCSKSFTRKEHLNNHI 681
P++C+ C+K F ++ + H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+G+ + C C +SFT K + H+ +H G P+ C C K F K HL H+++HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 689 PHKCDFCLKTFTRKEHLTNHL 709
P++C+ C K F ++ H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
+G+ + C C KSFT K + H+ +H G P+ C C K F K HL H+K H G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHT 741
+ CNIC+K F+ ++ H S T
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTSCT 89
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
+G+ + CQ CGK +T K HM H P+ C +C K F K H H+ HTG
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 521 PHRCDFCSKTFTRKEHLLNHV 541
P+ C+ C+K F ++ HV
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 350 GGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
G +Y C C F ++ RH H RPY C VC K F K HL H + HTG P
Sbjct: 7 GDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 410 YKCQYCGKNFSRKEHMVNHV 429
Y+C C K F ++ HV
Sbjct: 66 YECNICAKRFMWRDSFHRHV 85
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
+G+ + C C K+FT K H+ H G + C +C K F K HLV H + HTG +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 745 PFACTDCGKSFPLKGNL 761
P+ C C K F + +
Sbjct: 65 PYECNICAKRFMWRDSF 81
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHV 362
CGK F ++ Q H H +P+ C VCGK F + L+ H K H G Y C +C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 363 FANEESLQRHT 373
F +S RH
Sbjct: 75 FMWRDSFHRHV 85
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLV 796
S +G++ + C CGKSF K H H + RP+ C VC K F K HLV
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSMH------LGLRPYGCGVCGKKFKMKHHLV 54
Query: 797 SHLRSHLNERPHVCPHCSKSFVEHTCMIKHI 827
H++ H +P+ C C+K F+ +H+
Sbjct: 55 GHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
+G+ + C C K F K H H G RP+ C CGK F +K +L+ H + H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH---- 60
Query: 773 GEVLERPFKCDVCPKDFTCKGHLVSHLRS 801
+P++C++C K F + H+ S
Sbjct: 61 --TGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 331 CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKT 390
CGK+F +++ H HLG Y C VC F + L H K H+ +PY C++C K
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKR 74
Query: 391 FARKEHLENHT 401
F ++ H
Sbjct: 75 FMWRDSFHRHV 85
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSH 344
+ C +CGK F ++ ++ H + HT KP+ C++C K F ++ H
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
+G ++ + C C K FT K H+ HL RP+ C C K F ++ H++
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 611 CPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHF--CS 668
C K F + H+ H G H C+ C ++F L H +HTGE P +C F C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 669 KSFTRKEHLNNHIRLHTGESPHKCDF--CLKTFTRKEHLTNHLKQHA 713
K F+ +L H+R+HTG+ P+ C F C K F + +L +H+ HA
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQC 608
PHK C K F + H+ H G H C C K+F L H HTGE P+QC
Sbjct: 9 PHK--GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 609 QY--CPKAFSRKDHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLHT 657
+ C K FS +L HVR HTG+ P+ C + C + F + +L +H+ H
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 359 CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQY--CG 416
C +F + ++++H H R + C+ C K F L+ H HTGE P++C + CG
Sbjct: 13 CTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 417 KNFSRKEHMVNHVRKHTGETPHRCEI--CKKAFTRKEHYVNHVMWHT 461
K FS ++ HVR HTG+ P+ C C K F + + +H++ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERPFAC 748
PHK C K F + HL H G HVC C K F++ L H HTGE+PF C
Sbjct: 9 PHK--GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 749 T--DCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKC--DVCPKDFTCKGHLVSHLRSHLN 804
T CGK F L NL H R H +RP+ C D C K F +L SH+ +H
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIH------TGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Query: 805 ER 806
+
Sbjct: 120 AK 121
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 499 CTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNY--CA 556
CTK F H+ H G H C C K F L H HTGE P +C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 557 KSFTRKEHLVNHVRQHTGDSPHKCNY--CAKSFTRKEHLVNHVRQHT 601
K F+ +L HVR HTGD P+ C + C K F + +L +H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 415 CGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVC--QVCG 472
C K F M H+ H G H C C KAF H + HTGE P C + CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 473 KKYTRKEHLANHMRSHTNDTPFKCEI--CTKSFTRKEHFTNHIMWHT 517
K+++ +L H+R HT D P+ C C K F + + +HI+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 443 CKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKC--EICT 500
C K F H+ H G HVC CGK + L H HT + PF+C E C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 501 KSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLNHVRQHT 545
K F+ + H+ HTG+ P+ C F C+K F + +L +H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 723 CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKC 782
C+K F + H +H G R C +CGK+F L HQ H E+PF+C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH------TGEKPFQC 65
Query: 783 --DVCPKDFTCKGHLVSHLRSHLNERPHVCPH--CSKSFVEHTCMIKHI 827
+ C K F+ +L +H+R H +RP+VCP C+K F + T + HI
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 331 CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSV--CM 388
C K F + + H H G ++ CA C F L+RH H+ ++P+ C+ C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 389 KTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHVRKHT 433
K F+ +L H R HTG+ PY C + C K F++ ++ +H+ H
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKC 692
PHK C + F + H+ H G H C C K+F L H +HTGE P +C
Sbjct: 9 PHK--GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Query: 693 DF--CLKTFTRKEHLTNHLKQHAGETEHVC--NICSKPFLKKEHLVNHSRSHT 741
F C K F+ +L H++ H G+ +VC + C+K F + +L +H +H
Sbjct: 66 TFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYT 355
H C CGK F ++ H+ HT KPF C CGK F L +H + H G Y
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYV 94
Query: 356 CAV--CFHVFANEESLQRHTKRHS 377
C C FA +L+ H H+
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHA 118
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHT 433
++PY C C K F+R L H R HTGE PYKC CGK FS+ ++NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 35/55 (63%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHT 657
E PY C C KAFSR LV H R HTGE P+KC C ++F++ L NH R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 35/55 (63%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHT 629
+ P+ C C K+F+R LV H R HTGE PY+C C KAFS+ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHT 601
E P+ C C K+F+R LV H R HTG+ P+KC C K+F++ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHT 461
E PY C CGK FSR +V H R HTGE P++C C KAF++ +NH HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHT 573
E P+ C C K F+R L+ H R HTGE P+KC C K+F++ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHT 685
E P+ C C ++F+R L H R+HTGE P+KC C K+F++ L NH R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTND 491
E P+ C C KAF+R V H HTGE P+ C CGK +++ L NH R HT+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
E + C C K F + LV H R HTGE+P+ C +CGK+F L+ HQR H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQH 712
E P+ C C K+F+R L H R+HTGE P+KC C K F++ L NH + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHT 545
+ P+ C C K+F+R H HTGE P++C C K F++ L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHT 517
E P+ C CGK ++R L H R HT + P+KC C K+F++ NH HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSH 802
E+P+ C +CGK+F L+ HQR H E+P+KC C K F+ L++H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTG------EKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHT 741
E P+ C C K F+R L H + H GE + C C K F + L+NH R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGG 351
+ C CGK F ++ H+R HT KP+ C CGKAF + L++H + H G
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
E+P+ C C K F+ LV H R H E+P+ C C K+F +++ +I H R
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHT 405
Y C C F+ L +H + H+ ++PY C C K F++ L NH R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHS 377
KP+ C CGKAF + L+ H + H G Y C C F+ L H + H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+KC+ C KSF+ L H R HTGE PY+C C KAF ++ HL+ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
R Y C C K+F+ L H R HTGE PYKC CGK F ++ H++ H R HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 522 HRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
++CD C K+F+ L H R HTGE P+KC+ C K+F ++ HL+ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 550 HKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+KC+ C KSF+ L H R HTG+ P+KC+ C K+F ++ HL+ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
YKC CGK+FS + H R HTGE P++C+ C KAF ++ H + H HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+KC+ C KSF+ + H HTGE P++CD C K F ++ HL+ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
Y+C C K+FS L H R HTGE P+KC C ++F ++ HL H R+HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 634 HKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+KC C +SF+ L+ H R HTGE P+KC C K+F ++ HL H R+HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 690 HKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
+KCD C K+F+ L+ H + H GE + C+ C K F+++ HL+ H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 662 HKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAG 714
+KC C KSF+ L+ H R HTGE P+KCD C K F ++ HL H + H G
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 468 CQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
C CGK ++ L+ H R+HT + P+KC+ C K+F ++ H H HTG P
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 744 RPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHL 803
R + C +CGKSF +L H+R+H E+P+KCD C K F + HL+ H R H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTH------TGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 804 NERP 807
P
Sbjct: 71 GSGP 74
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 297 NHTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
+ CD CGK F + + HRR HT KP+ C CGKAF ++ L+ H + H G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
C+ C K F L H R+HTGE+P+ C +CGK+F + +L+ H R H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 438 HRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
++C+ C K+F+ H HTGE P+ C CGK + ++ HL H R HT P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
Y C C F++ L +H + H+ ++PY C C K F ++ HL H R HTG P
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 778 RPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
R +KCD C K F+ L H R+H E+P+ C C K+F++ + +I H R
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 380 RPYCCSV--CMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHT 433
RPY C V C + F+R + L H R HTG+ P++C+ C +NFSR +H+ H+R HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 605 PYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHT 657
PY C + C + FSR D L H+R HTG+ P +C C ++F+R DHL H+R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 577 PHKC--NYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHT 629
P+ C C + F+R + L H+R HTG+ P+QC+ C + FSR DHL H+R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 619 DHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEH 676
++L+N+V P+ C C + F+R D L H+R+HTG+ P +C C ++F+R +H
Sbjct: 7 NNLLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH 64
Query: 677 LNNHIRLHT 685
L HIR HT
Sbjct: 65 LTTHIRTHT 73
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 667 CSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHA 713
C + F+R + L HIR+HTG+ P +C C++ F+R +HLT H++ H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 465 PHVCQV--CGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHT 517
P+ C V C ++++R + L H+R HT PF+C IC ++F+R +H T HI HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 537 LLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNH 596
LLN+V C + F+R + L H+R HTG P +C C ++F+R +HL H
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Query: 597 VRQHT 601
+R HT
Sbjct: 69 IRTHT 73
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 409 PYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHT 461
PY C + C + FSR + + H+R HTG+ P +C IC + F+R +H H+ HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 493 PFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHT 545
P+ C E C + F+R + T HI HTG+ P +C C + F+R +HL H+R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 521 PHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHT 573
P+ C + C + F+R + L H+R HTG+ P +C C ++F+R +HL H+R HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 437 PHRC--EICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHT 489
P+ C E C + F+R + H+ HTG+ P C++C + ++R +HL H+R+HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 354 YTCAV--CFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHT 405
Y C V C F+ + L RH + H+ +P+ C +CM+ F+R +HL H R HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 689 PHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHT 741
P+ C + C + F+R + LT H++ H G+ C IC + F + +HL H R+HT
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 744 RPFACT--DCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRS 801
RP+AC C + F L H R H Q +PF+C +C ++F+ HL +H+R+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ------KPFQCRICMRNFSRSDHLTTHIRT 71
Query: 802 H 802
H
Sbjct: 72 H 72
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 723 CSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
C + F + + L H R HTG++PF C C ++F +L H R+H
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 324 KPFTCHV--CGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHS 377
+P+ C V C + F EL H + H G + C +C F+ + L H + H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 292 LPVMGNHTCDL--CGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCH 348
+P M + C + C + F ++ H R HT +KPF C +C + F L +H + H
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 778 RPFKCDV--CPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
RP+ C V C + F+ L H+R H ++P C C ++F + HIR
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+ P+KC C+ SF K +L +H +HTGE P++C+ C F R +L H R+H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
D P+KC+ C SF K + +H HTGE P+RC+ C F R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
D+PY C C +F K +L +H HTGE PY+C CG F+R ++ H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
D P+KC+ C SF K +L +H HTGE PY+C C F+R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+ PY+C C +F K +L +H HTGE P++C+ C F R +L H R+H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC+ C SF K +L +H HTG+ P++CN C F R +L H R H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+ P++CD C +F K +L +H HTGE P++CN C F R +L H R H+G+ P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
+ PYKC C +F K ++ +H HTGE P+RC IC F R + H H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
+ P+KCD C +F K +L +H H GE + CNIC F + +L H+R H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
+ P+KC C SF K +L +H +HTGE P++C+ C F R +L H + H+GE
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+ P++C+ C+ +F K + +H HTGE P+ C +CG ++ R +L H R H+ + P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+ C C + K +LA+H HT + P++C IC F R + H H+GE P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSH 802
++P+ C C SF KGNL H+ H E+P++C++C F +L +H R H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVH------TGEKPYRCNICGAQFNRPANLKTHTRIH 68
Query: 803 LNERP 807
E+P
Sbjct: 69 SGEKP 73
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
Y C C F + +L H H+ ++PY C++C F R +L+ HTR H+GE P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
+ CD C F Y+ + H+ HT KP+ C++CG F+ A L +H + H G
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSG 70
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRP 381
KP+ C C +F ++ L SH H G Y C +C F +L+ HT+ HS ++P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
+ + C+ C F K +L +H HTGE+P+ C CG F NL H R H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
++P+KCD C F KG+L SH H E+P+ C C F + H R
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 583 CAKSFTRKEHLVNHVRQHTGETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSY-- 638
C ++ + L H+ +HTGE P+ C + C K F+ HL H HTGE C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 639 CKQSFTRKDHLNNHV-RLHTGE-SPHKCHF--CSKSFTRKEHLNNHIRLHTGESPHKC-- 692
C FT K ++ H R H + + CHF C K+F + L H HT + P++C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 693 DFCLKTFTRKEHLTNHLKQHAG 714
+ C K F+ L H K HAG
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 410 YKCQY--CGKNFSRKEHMVNHVRKHTGETPHRC--EICKKAFTRKEHYVNHVMWHTGETP 465
Y C + CG +++ + H+ KHTGE P C E C+K FT H H + HTGE
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 466 HVCQV--CGKKYTRKEHLANHMRSHTNDT--PFKC--EICTKSFTRKEHFTNHIMWHTGE 519
C C ++T K ++ H N + C E C K+F + H HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 520 TPHRC--DFCSKTFTRKEHLLNHVRQHTG---ESPHKCNYCAKSFT 560
P+ C + C K F+ L H + H G + C++ K++T
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 471 CGKKYTRKEHLANHMRSHTNDTPFKC--EICTKSFTRKEHFTNHIMWHTGETPHRCDF-- 526
CG Y + L H+ HT + PF C E C K FT H T H + HTGE CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 527 CSKTFTRKEHLLNHVRQ--HTGESPHKCNY--CAKSFTRKEHLVNHVRQHTGDSPHKCNY 582
C FT K ++ H + + + C++ C K+F + L H HT P++C +
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 583 --CAKSFTRKEHLVNHVRQHTG 602
C K F+ L H + H G
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAG 161
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 636 CSY--CKQSFTRKDHLNNHVRLHTGESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHK 691
CS+ C ++ + L H+ HTGE P C C K FT HL H HTGE
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 74
Query: 692 CDF--CLKTFTRKEHLTNHLKQ--HAGETEHVCNI--CSKPFLKKEHLVNHSRSHTGERP 745
CD C FT K ++ H + + +VC+ C K F K L H SHT + P
Sbjct: 75 CDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP 134
Query: 746 FAC--TDCGKSFPLKGNLLFHQRSH 768
+ C C K F L L H++ H
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 15/170 (8%)
Query: 378 IDRPYCCSV--CMKTFARKEHLENHTRCHTGETPYKC--QYCGKNFSRKEHMVNHVRKHT 433
+ + Y CS C + + L+ H HTGE P+ C + C K F+ H+ H HT
Sbjct: 9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 68
Query: 434 GETPHRCEI--CKKAFTRKEHYVNHV-MWHTGET-PHVC--QVCGKKYTRKEHLANHMRS 487
GE C+ C FT K + H +H + +VC + CGK + + L H S
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
Query: 488 HTNDTPFKC--EICTKSFTRKEHFTNHIMWHTG---ETPHRCDFCSKTFT 532
HT P++C E C K F+ H H G + C F KT+T
Sbjct: 129 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 695 CLKTFTRKEHLTNHLKQHAGETEHVCNI--CSKPFLKKEHLVNHSRSHTGERPFACTD-- 750
C + + L HL +H GE C C K F HL HS +HTGE+ F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 751 CGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVC 810
C F K N+ H +R N ++ + C K F L H SH + P+ C
Sbjct: 80 CDLRFTTKANMKKH--FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 811 PH--CSKSF 817
PH C K F
Sbjct: 138 PHEGCDKRF 146
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 74/179 (41%), Gaps = 13/179 (7%)
Query: 292 LPVM-GNHTCDL--CGKFFPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSHGK 346
LPV+ + C CG + +++ H HT KPF C C K F L H
Sbjct: 6 LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Query: 347 CHLGGSMYTCAV--CFHVFANEESLQRHTKR-HSIDR-PYCCSV--CMKTFARKEHLENH 400
H G +TC C F + ++++H R H+I Y C C K F + L+ H
Sbjct: 66 THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Query: 401 TRCHTGETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHV 457
HT + PY+C + C K FS + H + H G + + C Y+ HV
Sbjct: 126 QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 184
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNH 428
+P+ C +CM+ F+R +HL H R HTGE P+ C CG+ F+R + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNH 652
P+QC+ C + FSR DHL H+R HTGE P C C + F R D H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNH 456
P++C+ C +NFSR +H+ H+R HTGE P C+IC + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNH 540
PF+C IC ++F+R +H T HI HTGE P CD C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNH 624
P +C C ++F+R +HL H+R HTGE P+ C C + F+R D H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNH 708
P +C C ++F+R +HL HIR HTGE P CD C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNH 680
P +C C ++F+R DHL H+R HTGE P C C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 437 PHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANH 484
P +C IC + F+R +H H+ HTGE P C +CG+K+ R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQC 608
P +C C ++F+R +HL H+R HTG+ P C+ C + F R + H R P
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQHILPILE 61
Query: 609 QYCPKAFSRKDHLVNHV 625
+ S+ HL N V
Sbjct: 62 DKVEELLSKNYHLENEV 78
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNH 512
P C++C + ++R +HL H+R+HT + PF C+IC + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNH 568
P +C C + F+R +HL H+R HTGE P C+ C + F R + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSF 755
C IC + F + +HL H R+HTGE+PFAC CG+ F
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNH 736
P +C C++ F+R +HLT H++ H GE C+IC + F + + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 778 RPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFV 818
+PF+C +C ++F+ HL +H+R+H E+P C C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYC 383
KPF C +C + F L +H + H G + C +C FA + +RH I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPIL 60
Query: 384 CSVCMKTFARKEHLENHT 401
+ ++ HLEN
Sbjct: 61 EDKVEELLSKNYHLENEV 78
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 295 MGNHTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSH 344
M C +C + F + H R HT KPF C +CG+ F E H
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 744 RPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFT 790
+PF C C ++F +L H R+H E+PF CD+C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH------TGEKPFACDICGRKFA 42
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%)
Query: 350 GGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
G Y C VC + SL+RH HS ++ Y C C K F E+ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETP 437
Y+C CGK+F + M +H++ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 462 GETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
G ++C VC + Y L H H+ + + C C K F E+ T H + HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 522 HRCDFCSKTFTRKEHLLNHVRQHTGESP 549
++C C K+F + + +H++ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 630 GESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
G + C CK+S+ L H +H+ E + C +C K F E+ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 690 HKCDFCLKTFTRKEHLTNHLK 710
++C C K+F + +++H+K
Sbjct: 79 YQCLACGKSFINYQFMSSHIK 99
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 658 GESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAGETE 717
G + C C +S+ L H +H+ E + C +C K F E+ T H H GE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 718 HVCNICSKPFLKKEHLVNHSRSHTGERP 745
+ C C K F+ + + +H +S + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 382 YCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCE 441
Y C VC +++ L H H+ E Y C+YC K F E+ H HTGE ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 442 ICKKAFTRKEHYVNHV 457
C K+F + +H+
Sbjct: 83 ACGKSFINYQFMSSHI 98
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 546 GESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
G + C C +S+ L H H+ + + C YC K F E+ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESP 633
YQC C K+F + +H++ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 518 GETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
G + C C +++ L H H+ E + C YC K F E+ H HTG+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
++C C KSF + + +H++ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 406 GETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
G Y C C +++ + H H+ E + C C+K F E+ H + HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 466 HVCQVCGKKYTRKEHLANHMRS-HTND 491
+ C CGK + + +++H++S H+ D
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQD 105
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%)
Query: 686 GESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
G + C C +++ L H H+ E ++ C C K F E+ H HTGER
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 746 FACTDCGKSF 755
+ C CGKSF
Sbjct: 79 YQCLACGKSF 88
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 574 GDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
G + C C +S+ L H H+ E Y C+YC K F ++ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 634 HKCSYCKQSFTRKDHLNNHVRLHTGESP 661
++C C +SF +++H++ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 602 GETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
G Y C C +++ L H H+ E + C YC++ F ++ H HTGE
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 662 HKCHFCSKSFTRKEHLNNHIRLHTGESP 689
++C C KSF + +++HI+ + P
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCN 553
+ C +C +S+ H H+ E + C +C K F E+ H HTGE ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 554 YCAKSFTRKEHLVNHVRQHTGDSP 577
C KSF + + +H++ P
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDP 106
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 714 GETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
G ++C +C + ++ L H H+ E+ + C C K FPL H+ H
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH----- 73
Query: 774 EVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNHTL 833
ER ++C C K F + SH++S ++ P SK + H C IR+ L
Sbjct: 74 -TGERRYQCLACGKSFINYQFMSSHIKSVHSQDP---SGDSKLYRLHPCRSLQIRQYAYL 129
Query: 834 AN 835
++
Sbjct: 130 SD 131
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 434 GETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
G + C +CK+++ H H+ E + C+ C K + E+ H HT +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 494 FKCEICTKSFTRKEHFTNHI 513
++C C KSF + ++HI
Sbjct: 79 YQCLACGKSFINYQFMSSHI 98
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 311 YQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQ 370
Y++IV R + + C VC +++ L H H Y C C VF E
Sbjct: 13 YELIVDGRVY-----YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT 67
Query: 371 RHTKRHSIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+H H+ +R Y C C K+F + + +H + + P
Sbjct: 68 KHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 291 DLPVMGN--HTCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCH 348
+L V G + C +C + + + H H+ K + C C K F H H
Sbjct: 14 ELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHH 73
Query: 349 LGGSMYTCAVCFHVFANEESLQRHTK 374
G Y C C F N + + H K
Sbjct: 74 TGERRYQCLACGKSFINYQFMSSHIK 99
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 382 YCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRK-HTG 434
+ C VC + FAR+EHL+ H R HT E PY C C + F+R++ ++ H +K H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 467 VCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNH 512
VC+VC + + R+EHL H RSHTN+ P+ C +C ++FTR++ H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQ-HTG 546
F CE+CT++F R+EH H HT E P+ C C++ FTR++ L+ H ++ H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 580 CNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQ-HTG 630
C C ++F R+EHL H R HT E PY C C +AF+R+D L+ H ++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHV-RLHTG 658
+ C+ C +AF+R++HL H R HT E P+ C C ++FTR+D L H ++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQ-HTGD 575
C+ C++ F R+EHL H R HT E P+ C C ++FTR++ L+ H ++ H+G+
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 552 CNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQ-HTG 602
C C ++F R+EHL H R HT + P+ C C ++FTR++ L+ H ++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 664 CHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHL-KQHAG 714
C C+++F R+EHL H R HT E P+ C C + FTR++ L H K H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVM-WHTG 462
+ C+ C + F+R+EH+ H R HT E P+ C +C +AFTR++ + H H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 636 CSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHI-RLHTG 686
C C ++F R++HL H R HT E P+ C C+++FTR++ L H ++H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 719 VCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFH-QRSHRKQNGE 774
VC +C++ F ++EHL H RSHT E+P+ C C ++F + L+ H Q+ H GE
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 780 FKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNHT 832
F C+VC + F + HL H RSH NE+P+ C C+++F +I+H +K H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 440 CEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANH 484
CE+C +AF R+EH H HT E P+ C +C + +TR++ L H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 354 YTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENHT-RCHTG 406
+ C VC FA +E L+RH + H+ ++PY C +C + F R++ L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 692 CDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRS-HTG 742
C+ C + F R+EHL H + H E + C +C++ F +++ L+ H++ H+G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 326 FTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKR 375
F C VC +AF Q L H + H Y C +C F + L RH ++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 299 TCDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGK 346
C++C + F + + H R HT KP+ C +C +AF + L+ H +
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 746 FACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSH 798
F C C ++F + +L H RSH E+P+ C +C + FT + L+ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN------EKPYPCGLCNRAFTRRDLLIRH 49
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 658 GESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQH 712
G S +C +C K F +LN H+R HTGE P+KC+FC +K L HL++H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 574 GDSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQH 628
G S +C+YC K F +L H+R HTGE PY+C++C A ++K L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%)
Query: 630 GESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLH 684
G S +CSYC + F +LN H+R HTGE P+KC FC + +K L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 546 GESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQH 600
G S +C+YC K F +L H+R HTG+ P+KC +C + +K L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 602 GETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLH 656
G + +C YC K F +L H+R HTGE P+KC +C+ + +K L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 406 GETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWH 460
G + +C YCGK F ++ H+R HTGE P++CE C+ A +K H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 518 GETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQH 572
G + C +C K F +L H+R HTGE P+KC +C + +K L H+ +H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 384 CSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKH 432
CS C K F +L H R HTGE PYKC++C ++K + H+ +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 462 GETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWH 516
G + C CGK + +L H+R+HT + P+KCE C + +K H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 714 GETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRK 770
G + C+ C K F +L H R+HTGE+P+ C C + K +L +H H K
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 495 KCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQH 544
+C C K F + H+ HTGE P++C+FC +K L H+ +H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSH 344
C CGKFF Y + +H R HT KP+ C C A + L H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 434 GETPHRCEICKKAFTRKEHYVN-HVMWHTGETPHVCQVCGKKYTRKEHLANHMRSH 488
G + C C K F R +Y+N H+ HTGE P+ C+ C +K L H+ H
Sbjct: 1 GSSSRECSYCGK-FFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 781 KCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNH 831
+C C K F +L HLR+H E+P+ C C + + T + H+ ++H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 686 GESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSH 740
G S +C +C K F +L HL+ H GE + C C +K L H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 328 CHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRH 376
C CGK F L H + H G Y C C + A + SL+ H +RH
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 742 GERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRS 801
G C+ CGK F L H R+H E+P+KC+ C K L HL
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTH------TGEKPYKCEFCEYAAAQKTSLRYHLER 54
Query: 802 H 802
H
Sbjct: 55 H 55
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 350 GGSMYTCAVCFHVFANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHLENH 400
G S C+ C F + L H + H+ ++PY C C A+K L H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE+P+ CTDCGK+F LK L+ HQR+H ++G
Sbjct: 2 SSGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGESG 38
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GE PY+C C KAF K L+ H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+GE PY+C CGK F K ++ H R HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+GE P++C C K+F K L+ H R HTG+S
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+GE P+ C C K F K L+ H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G+ P++C C K+F K L+ H R HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+GE P++C C K+F K L H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+GE P++C+ C ++F K L H R HTGES
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGET 408
S ++PY C+ C K F K L H R HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+GE P+ C C KAF K + H HTGE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+GE P+ C CGK + K L H R+HT ++
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
+G E+P++C C K F K L+ H R+H E
Sbjct: 3 SGSSGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
+GE + C C K F K L+ H R+HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGKAF +++L+ H + H G
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHT 321
+ C CGK F + Q+I+H+R HT
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHT 34
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
+GE P++C C K F K L H + H GE+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GE PY+C C KAF+RKD L++H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+GE PY+C CGK F+RK+ +++H R H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+GE+P++C+ C K+F RK+ L++H R H G+S
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+GE+P++CS C ++F RKD L +H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+GE P+ C C K F RK+ L++H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G++P++C+ C K+F RK+ L++H R H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE P+ C++CGK+F K L+ HQR+H ++G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESG 38
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
+GE+P++C C K F RK+ L +H + HAGE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+GE+P++C C K+F RK+ L +H R H GES
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+GE P+ C C KAF RK+ ++H H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+GE P+ C CGK + RK+ L +H R+H ++
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGET 408
S + PY CS C K F RK+ L +H R H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
+GE + C+ C K F +K+ L++H R+H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
+G E P++C C K F K L+SH R+H E
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 489 TNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
+ + P++C C K+F RK+ +H H GE+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 325 PFTCHVCGKAFDFQAELMSHGKCHLG 350
P+ C CGKAF+ + +L+SH + H G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 466 HVCQV--CGKKYTRKEHLANHMRSHTNDTPFKC--EICTKSFTRKEHFTNHIMWHTGETP 521
++C CG Y + L H+ HT + PF C E C K FT H T H + HTGE
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 522 HRCDF--CSKTFTRKEHLLNHVRQ 543
CD C FT K ++ H +
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNR 87
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 410 YKCQY--CGKNFSRKEHMVNHVRKHTGETPHRC--EICKKAFTRKEHYVNHVMWHTGETP 465
Y C + CG +++ + H+ KHTGE P C E C+K FT H H + HTGE
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 466 HVCQV--CGKKYTRKEHLANHM 485
C C ++T K ++ H
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHF 85
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 583 CAKSFTRKEHLVNHVRQHTGETPYQC--QYCPKAFSRKDHLVNHVRQHTGESPHKCSY-- 638
C ++ + L H+ +HTGE P+ C + C K F+ HL H HTGE C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 639 CKQSFTRKDHLNNHV-RLH 656
C FT K ++ H R H
Sbjct: 71 CDLRFTTKANMKKHFNRFH 89
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 606 YQCQY--CPKAFSRKDHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLHTGESP 661
Y C + C A+++ L H+ +HTGE P C C++ FT HL H HTGE
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 662 HKCHF--CSKSFTRKEHLNNHI-RLH 684
C C FT K ++ H R H
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 555 CAKSFTRKEHLVNHVRQHTGDSPHKCNY--CAKSFTRKEHLVNHVRQHTGETPYQCQY-- 610
C ++ + L H+ +HTG+ P C C K FT HL H HTGE + C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 611 CPKAFSRKDHLVNHVRQ 627
C F+ K ++ H +
Sbjct: 71 CDLRFTTKANMKKHFNR 87
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 636 CSY--CKQSFTRKDHLNNHVRLHTGESPHKC--HFCSKSFTRKEHLNNHIRLHTGESPHK 691
CS+ C ++ + L H+ HTGE P C C K FT HL H HTGE
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 65
Query: 692 CDF--CLKTFTRKEHLTNHLKQ 711
CD C FT K ++ H +
Sbjct: 66 CDSDGCDLRFTTKANMKKHFNR 87
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 524 CDF--CSKTFTRKEHLLNHVRQHTGESPHKCNY--CAKSFTRKEHLVNHVRQHTGDSPHK 579
C F C + + L H+ +HTGE P C C K FT HL H HTG+
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 65
Query: 580 CNY--CAKSFTRKEHLVNHVRQ 599
C+ C FT K ++ H +
Sbjct: 66 CDSDGCDLRFTTKANMKKHFNR 87
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 692 CDF--CLKTFTRKEHLTNHLKQHAGETEHVCN--ICSKPFLKKEHLVNHSRSHTGERPFA 747
C F C + + L HL +H GE C C K F HL HS +HTGE+ F
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 65
Query: 748 CTD--CGKSFPLKGNL 761
C C F K N+
Sbjct: 66 CDSDGCDLRFTTKANM 81
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 667 CSKSFTRKEHLNNHIRLHTGESPHKC--DFCLKTFTRKEHLTNHLKQHAGETEHVCNI-- 722
C ++ + L H+ HTGE P C + C K FT HLT H H GE C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 723 CSKPFLKKEHLVNH 736
C F K ++ H
Sbjct: 71 CDLRFTTKANMKKH 84
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 380 RPYCCSV--CMKTFARKEHLENHTRCHTGETPYKC--QYCGKNFSRKEHMVNHVRKHTGE 435
+ Y CS C + + L+ H HTGE P+ C + C K F+ H+ H HTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 436 TPHRCEI--CKKAFTRKEHYVNHV 457
C+ C FT K + H
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHF 85
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 354 YTC--AVCFHVFANEESLQRHTKRHSIDRPYCC--SVCMKTFARKEHLENHTRCHTGETP 409
Y C A C + LQ H +H+ ++P+ C C K F HL H+ HTGE
Sbjct: 4 YICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 63
Query: 410 YKCQY--CGKNFSRKEHMVNHVRK 431
+ C C F+ K +M H +
Sbjct: 64 FTCDSDGCDLRFTTKANMKKHFNR 87
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 499 CTKSFTRKEHFTNHIMWHTGETPHRC--DFCSKTFTRKEHLLNHVRQHTGESPHKCNY-- 554
C ++ + H+ HTGE P C + C K FT HL H HTGE C+
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 555 CAKSFTRKEHLVNHVRQ 571
C FT K ++ H +
Sbjct: 71 CDLRFTTKANMKKHFNR 87
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 749 TDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKC--DVCPKDFTCKGHLVSHLRSHLNER 806
DCG ++ L H H E+PF C + C K FT HL H +H E+
Sbjct: 9 ADCGAAYNKNWKLQAHLSKH------TGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK 62
Query: 807 PHVCPH--CSKSFVEHTCMIKHIRKNHTL 833
C C F M KH + H +
Sbjct: 63 NFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSHGKCHLGGSMYTCAV-- 358
CG + +++ H HT KPF C C K F L H H G +TC
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 359 CFHVFANEESLQRHTKR 375
C F + ++++H R
Sbjct: 71 CDLRFTTKANMKKHFNR 87
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 583 CAKSFTRKEHLVNHVRQHTGETPYQCQY--CPKAFSRKDHLVNHVRQH 628
C K++ + HL H R HTGE P+ C + C + F+R D L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 387 CMKTFARKEHLENHTRCHTGETPYKCQY--CGKNFSRKEHMVNHVRKH 432
C KT+ + HL+ HTR HTGE P+ C + C + F+R + + H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 611 CPKAFSRKDHLVNHVRQHTGESPHKCSY--CKQSFTRKDHLNNHVRLH 656
C K + + HL H R HTGE P CS+ C++ F R D L+ H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 718 HVCN--ICSKPFLKKEHLVNHSRSHTGERPFACT--DCGKSFPLKGNLLFHQRSH 768
H+C+ C K + K HL H+R+HTGE+PF+C+ C + F L H+R+H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 527 CSKTFTRKEHLLNHVRQHTGESPHKCNY--CAKSFTRKEHLVNHVRQH 572
C KT+ + HL H R HTGE P C++ C + F R + L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 555 CAKSFTRKEHLVNHVRQHTGDSPHKCNY--CAKSFTRKEHLVNHVRQH 600
C K++ + HL H R HTG+ P C++ C + F R + L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 667 CSKSFTRKEHLNNHIRLHTGESPHKCDF--CLKTFTRKEHLTNHLKQH 712
C K++ + HL H R HTGE P C + C + F R + L+ H + H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 634 HKCSY--CKQSFTRKDHLNNHVRLHTGESPHKCHF--CSKSFTRKEHLNNHIRLH 684
H CS+ C +++ + HL H R HTGE P C + C + F R + L+ H R H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 466 HVCQ--VCGKKYTRKEHLANHMRSHTNDTPFKCEI--CTKSFTRKEHFTNH 512
H+C CGK Y + HL H R+HT + PF C C + F R + + H
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 415 CGKNFSRKEHMVNHVRKHTGETPHRCEI--CKKAFTRKEHYVNHVMWH 460
CGK + + H+ H R HTGE P C C++ F R + H H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 482 ANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDF--CSKTFTRKEHLLN 539
++ +RSH P C K++ + H H HTGE P C + C + F R + L
Sbjct: 12 SSRIRSHICSHPG----CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 540 HVRQH 544
H R H
Sbjct: 68 HRRTH 72
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 443 CKKAFTRKEHYVNHVMWHTGETPHVC--QVCGKKYTRKEHLANHMRSH 488
C K + + H H HTGE P C + C +++ R + L+ H R+H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 359 CFHVFANEESLQRHTKRHSIDRPYCCSV--CMKTFARKEHLENHTRCH 404
C + L+ HT+ H+ ++P+ CS C + FAR + L H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 695 CLKTFTRKEHLTNHLKQHAGETEHVCNI--CSKPFLKKEHLVNHSRSH 740
C KT+ + HL H + H GE C+ C + F + + L H R+H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 290 LDLPVMGNHTCD--LCGKFFPYRYQMIVHRRYHTERKPFTCHV--CGKAFDFQAELMSHG 345
+D + +H C CGK + + H R HT KPF+C C + F EL H
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
Query: 346 KCH 348
+ H
Sbjct: 70 RTH 72
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRK-HTGETPHRCEI 442
PY CQ CGK FSR +H+ H+++ HT E PH+C++
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQ-HTGESPHKC 636
PY CQ C K FSR DHL H++Q HT E PHKC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIR-LHTGESPHKCDFCL 696
P+ C C K F+R +HLN HI+ +HT E PHKC +
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVR-LHTGESPHKCHF 666
P+ C C + F+R DHLN H++ +HT E PHKC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 1/35 (2%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRS-HTNDTPFKCEI 498
P++CQ CGK ++R +HL H++ HT++ P KC++
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 378 IDRPYCCSVCMKTFARKEHLENHTR-CHTGETPYKCQ 413
+ +PY C C K F+R +HL H + HT E P+KCQ
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQ-HTGESPHKC 552
P+ C C K F+R +HL H++Q HT E PHKC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQ-HTGDSPHKC 580
P+ C C K F+R +HL H++Q HT + PHKC
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQ-HTGETPYQCQ 609
P+ C C K F+R +HL H++Q HT E P++CQ
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 493 PFKCEICTKSFTRKEHFTNHI-MWHTGETPHRCDF 526
P+ C+ C K F+R +H HI HT E PH+C
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 437 PHRCEICKKAFTRKEHYVNHV-MWHTGETPHVCQV 470
P+ C+ C K F+R +H H+ HT E PH CQV
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQ-HAGETEHVCNI 722
P+ C C K F+R +HL H+KQ H E H C +
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 776 LERPFKCDVCPKDFTCKGHLVSHLRS-HLNERPHVC 810
+ +P+ C C K F+ HL H++ H +ERPH C
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIR 828
ERPF C+ C K + L H R+HL RP CP C K F + + + +H++
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK 53
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQH 712
E P C+FC K++ L+ H R H G P C C K F + + HLK H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKH 432
+RP+ C+ C KT+ L H R H G P C CGK F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVRLH 656
E P+ C +C K + L H R H G P C C + F + +N H+++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIRLH 684
E P C++C +++ L+ H R H G P C C K F + +N H+++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQH 572
E P C+FC KT+ L H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSF 755
E CN C K + L H R+H G RP +C +CGK F
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCF 42
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRH 376
+PF C+ CGK + + L H + HLG +C C F ++ + RH K H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQH 600
E P CN+C K++ L H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHIMWH 516
E P C CGK Y L+ H R+H P C C K F + H+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWH 460
E P+ C +CGK + + H R H G P C C K F + H+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQH 628
+ P CN+C K++ L H R H G P C C K F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKPFTCHVCGKAFDFQAELMSHGKCH 348
C+ CGK + + HRR H +P +C CGK F Q+E+ H K H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLVSHLRSH 802
ERPF C CGK++ L H+R+H + RP C C K F + + HL+ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAH------LGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Query: 803 LNE 805
N+
Sbjct: 56 QNK 58
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 490 NDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQH 544
++ PF C C K++ + H H G P C C K F + + H++ H
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGETEHVCNICSKPFLKKEHLVNHSRSH 740
E P C+FC KT+ L+ H + H G C C K F + + H + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETPHVCQVCGKKYTRKEHLANHMRSHTN 490
E P C C K + H H G P C CGK + + + H++ H N
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ PHKCN C KSF + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E PHKCN C KSF + HL+ H R HTG+ P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E PHKC+ C KSF + HL H R+HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E PH+C+ C K+F + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E PHKC+ C +SF + HL H R+HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC CGK+F + H++ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E H CN C K F++ HL+ H R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C C K+F + HL+ H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+RP+ C+ C K+F + HL H R HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
ERP KC+ C K F HL+ H R H E+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E PH+C C K+F + H + H HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E PH C CGK + + HL H R HT + P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E PHKC+ C K+F + HL H + H GE
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGE 38
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P KC C KSF + H H HTGE P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
ERP C +CGKSF +L+ HQR H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
H C+ CGK F +I H+R HT KP
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 805 ERPHVCPHCSKSFVEHTCMIKHIR 828
ERPH C C KSF++ +I+H R
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQR 33
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GE PY C C KAF RK H + H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+GE PY C CGK F RK H + H R HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+GE P+ C C K+F RK H + H R HTG+S
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+GE P+ C C K F RK H + H R HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+GE P+ C+ C ++F RK H H R+HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G+ P+ C C K+F RK H + H R HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+GE P+ C C K+F RK H H R+HTGES
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+GE P+ C C KAF RK H++ H HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE+P+ CT+CGK+F K + + H+R H ++G
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGESG 38
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGET 408
S ++PY C+ C K F RK H H R HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+GE P+VC CGK + RK H H R HT ++
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
+GE +VC C K F++K H + H R HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 489 TNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
+ + P+ C C K+F RK HF H HTGE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
+GE P+ C C K F RK H H + H GE+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGES 37
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 771 QNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
+G E+P+ C C K F K H ++H R H E
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K FT+ HL NH R+HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K FT+ HL NH R HTG+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F++ H+ NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K FT+ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C + FT+ HL NH R+HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K FT+ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F++ HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + HL NH R HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC+ C K FT+ HLTNH + H GE
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGE 38
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K FT+ H TNH HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +T+ HL NH R HT + P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K FT HL +H R H E+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + HL NH R HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C K FT+ H NH HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C+ C KAFS+ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C+ CGK FS+ H++ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C C K+F++ HL+ H R HTG+ P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C C K+F++ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K F++ HL+ H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C K+F++ HL H R+HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K F++ HL H R HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C C ++F++ HL H R+HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C+ C KAF++ H + H HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C+ CGK +++ HL H R HT + P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++C C K F+ HL+ H R H E+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C C K F + HL+ H R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C+ C K+F++ H H HTGE P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F +L+ HQR H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C+ C KAF++K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C CSK+FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C CSK FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C VC K F +K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C C+K+FT+K HL H + HTG+ P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C C+K+FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++C VC K FT K HL H ++H E+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C++C KAFT+K H H HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C+ C K F++K H+ H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C++C+K+FT+K H H HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C+VC K +T+K HLA H ++HT + P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C +CSK F +K HL H ++HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C C ++FT+K HL H + HTGE P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P++C C K FT+K HL H K H GE
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGE 38
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C VC KAF +A L H K H G
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAFS+K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK FS+K ++ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+RCD C K F++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C+ C K+F++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C+ C K+F++K L+ H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C K+F++K L HIR+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++CD C K F+ KG L+ H+R H P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C C ++F++K L H+R+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+RC+ C KAF++K + H+ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C CGK+F KG+L+ H R H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K F++K L H R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C+ C K+F++K HI HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +++K L H+R HT P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAG 714
E P++CD C K F++K L H++ H G
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ CD CGK F + +IVH R HT P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGKAF + L+ H + H G
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
+GE PY C CGK+FS K +++ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERP 779
S +GE+P+ C +CGK F K L+ HQR H GE L P
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIH---TGEKLSGP 41
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
+GE PY C C K FS K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
+GE P+ CN C K F+ K +L+ H R HTG+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
+G+ P+ CN C K F+ K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
+GE P+ C+ C K F+ K +L+ H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
+G E+P+ C+ C KDF+ K +L+ H R H E+
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
+GE P+ C+ C K F+ K +L H R+HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
+GE P+ C+ C + F+ K +L H R+HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGER 744
+GE + CN C K F K +L+ H R HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGE 407
S ++PY C+ C K F+ K +L H R HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTND 491
+GE P+ C CGK ++ K +L H R HT +
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
+GE P+ C+ C K F+ K +L H + H GE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGE 463
+GE P+ C C K F+ K + + H HTGE
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGE 36
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERK 324
+ C+ CGK F + +IVH+R HT K
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAFSRK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK FSRK +++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E+P++CH C K+F+RK L +H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
++P++C+ C K+F+RK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E+P++C+ C K+F+RK L++H R H G+ P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K F+RK L++H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK ++RK L +H R+H + P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+ PY C C K F+RK L +H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E+P++C C ++F+RK L +H R H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E P++C C K F+ K L+SH R+H E+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C C KAF+RK ++H H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 325 PFTCHVCGKAFDFQAELMSHGKCHLG 350
P+ CH CGKAF + +L+SH + H G
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAG 37
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E+P++C C K F+RK L +H + HAGE
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGE 38
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C+ C K F +K L++H R+H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E P+ C +CGK+F K L+ HQR+H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTH 35
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C CGK F +YQ+I H+R H KP
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C C K+F+RK +H H GE P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +G++P+ C +CGK+F LK L+ H+R H ++G
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGESG 38
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+G+ PY C C KAF K L+ H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+G+ PY C CGK F K ++ H R HTGE+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+G+ P+ CN C K+F K L+ H R HTG+S
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G P+ CN C K+F K L+ H R HTGE+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+G+ P+ C+ C K F K L+ H R HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+G+ P+ C+ C K+F K L H R+HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGET 408
S +PY C+ C K F K L H R HTGE+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
+G+ +VCN C K F K L+ H R HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+G+ P+ C+ C ++F K L H R+HTGES
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 321 TERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
+ +KP+ C+ CGKAF +++L+ H + H G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+G+ P+VC CGK + K L H R HT ++
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHT 321
+ C+ CGK F + Q+I+H R HT
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHT 34
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+G+ P+ C C KAF K + H HTGE+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+GE PYQC+ C K+FS++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+GE PY+C+ CGK+FS++ + H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+GE P++C C KSF+++ L H RLHTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
S +GE+P+ C +CGKSF +G+L H+R H
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+GE P++C C KSF+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+GE P++C C +SF+++ L H RLHTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G+ P++C C KSF+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+GE P++C C K+F+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+GE P+ C+ CGK ++++ LA H R HT P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
S ++PY C C K+F+++ L H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
+G E+P++C C K F+ +G L H R H P
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
+GE P++C+ C K+F+++ H HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 489 TNDTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ + P++C+ C KSF+++ H HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C C KAFS K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C CGK FS K +++ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ C+ C K+F+ K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ C+ C K+F+ K +L+ H+R H+G+ P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K F+ K +L+ H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+ C C K F+ K +L+ H+R+H E+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY CS C K F+ K +L H R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK ++ K +L HMR+H+ + P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ CS C ++F+ K +L H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E+P+ C++CGK+F K L+ H R+H +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C C K+F+ K +L H+R H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C C KAF+ K + + H+ H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C+ C K F K +L+ H R+H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+ C C K F+ K +L H++ H+GE
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGE 38
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+ C C K+F+ K + H+ H+GE P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C+ C KSF +K HLN H R+HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C+ C +SF +K HLN H R+HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ CN C KSF +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ CN C KSF +K HL H R HTG+ P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E ++CN C K F++K HL H R HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C CGK+F +K H+ H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P++C CGK + +K HL H R HT + P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C+ C K+F +K HL H R HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+ C C KSF +K H H HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+ C+ C K F K HL H R H E+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+ C+ C K+F +K HL H + H GE
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGE 38
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C C K+F +K H H HTGE P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGKSF K +L H+R H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE+P+ C+DCGK+F K L+ HQ H +G
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVSG 38
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GE PY C C KAF+ K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+GE P+ C+ C K+FT K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTG 434
+GE PY C CGK F+ K ++ H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 321 TERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
+ KP+ C CGKAF F+++L+ H H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTN 490
+GE P+VC CGK +T K L H HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+GE P+ C C K FT K L+ H HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+GE P+ CS C ++FT K L H +HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+GE P+ C C K+FT K L H +HTG S
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGVS 37
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTG 462
+GE P+ C C KAFT K + H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTG 602
+G+ P+ C+ C K+FT K L+ H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHT 321
+ C CGK F ++ Q+IVH+ HT
Sbjct: 11 YVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTG 406
S ++PY CS C K F K L H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 654 RLHTGESPHKCHFCSKSFTRKEHLNNHI-RLHTGE---SPHKCDFCLKTFTRKEHLTNHL 709
R HTGE P+ C C K+F +K+ L+ H R H + C C KTFTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 710 KQHAG 714
AG
Sbjct: 68 DNCAG 72
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 682 RLHTGESPHKCDFCLKTFTRKEHLTNHLKQHAG----ETEHVCNICSKPFLKKEHLVNHS 737
R HTGE P+ C C KTF +K+ L H K++ VC+ C K F ++ + H+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 738 RSHTG 742
+ G
Sbjct: 68 DNCAG 72
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 542 RQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTG----DSPHKCNYCAKSFTRKEHLVNHV 597
R HTGE P+ C++C K+F +K+ L H +++ + C+ C K+FTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 598 RQHTG 602
G
Sbjct: 68 DNCAG 72
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 598 RQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTG----ESPHKCSYCKQSFTRKDHLNNHV 653
R HTGE PY C +C K F +K L H +++ + CS C ++FTR++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 24/84 (28%)
Query: 402 RCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGETPHRCEICKKAFTRKEHYVNHVMWHT 461
R HTGE PY C +C K F +K+ + H +++ H AF
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY-----HDPNFVPAAF-------------- 48
Query: 462 GETPHVCQVCGKKYTRKEHLANHM 485
VC CGK +TR+ +A H
Sbjct: 49 -----VCSKCGKTFTRRNTMARHA 67
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 516 HTGETPHRCDFCSKTFTRKEHLLNHVRQHTG----ESPHKCNYCAKSFTRKEHLVNHVRQ 571
HTGE P+ C C KTF +K+ L H +++ + C+ C K+FTR+ + H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Query: 572 HTG 574
G
Sbjct: 70 CAG 72
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 374 KRHSIDRPYCCSVCMKTFARKEHLENH-TRCHTGE---TPYKCQYCGKNFSRKEHMVNHV 429
+ H+ ++PY CS C KTF +K+ L+ H R H + C CGK F+R+ M H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 570 RQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGE----TPYQCQYCPKAFSRKDHLVNHV 625
R HTG+ P+ C++C K+F +K+ L H +++ + C C K F+R++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 626 RQHTG 630
G
Sbjct: 68 DNCAG 72
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERPFKCDVCPKDFTCKGHLV 796
R+HTGE+P+AC+ C K+F K L H + + N + F C C K FT + +
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN--FVPAAFVCSKCGKTFTRRNTMA 64
Query: 797 SH 798
H
Sbjct: 65 RH 66
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 460 HTGETPHVCQVCGKKYTRKEHLANHMRSH--TNDTP--FKCEICTKSFTRKEHFTNHI 513
HTGE P+ C C K + +K+ L H + + N P F C C K+FTR+ H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 343 SHGKCHLGGSMYTCAVCFHVFANEESLQRHTKRH----SIDRPYCCSVCMKTFARKEHLE 398
S G+ H G Y C+ C F ++ L H KR+ + + CS C KTF R+ +
Sbjct: 5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMA 64
Query: 399 NHT 401
H
Sbjct: 65 RHA 67
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 486 RSHTNDTPFKCEICTKSFTRKE----HFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHV 541
R+HT + P+ C C K+F +K+ HF + + C C KTFTR+ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 542 RQHTG 546
G
Sbjct: 68 DNCAG 72
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 793 GHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNH 831
G S R+H E+P+ C HC K+F + + H ++ H
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F++ H+ NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K FT+ HL NH R+HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K FT+ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C + FT+ HL NH R+HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F++ HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + HL NH R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +T+ HLANH R HT P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + HL NH R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAG 714
E P+KC+ C K FT+ HL NH + H G
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTG 37
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K FT+ H NH HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C K FT+ H NH HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K FT HL +H R H +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK F +L HQR H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+G PY C C KAF K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+G PY C CGK F K +++ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G P+ C+ C K+F K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+G P+ C+ C K+F K +L+ H+R HTG+ P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+G P+ C C K F K +L+ H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+PY CS C K F K +L H R HTGE P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+G P+ C CGK + K +L HMR+HT + P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+G P+ CS C ++F K +L H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+G P+ C C K+F K +L H+R HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 771 QNGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
+G +P+ C C K F K +L+ H+R+H E+P
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
S +G +P+ C++CGK+F K L+ H R+H
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
+G + C+ C K F K +L+ H R+HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
+G P+ C C KAF K + + H+ HTGE P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGETP 521
P+ C C K+F K + H+ HTGE P
Sbjct: 10 PYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
+G P+ C C K F K +L H++ H GE
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGE 36
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C CGK F + +I+H R HT KP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 20/28 (71%)
Query: 662 HKCHFCSKSFTRKEHLNNHIRLHTGESP 689
H+CH C + FT K HLN H R+HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 634 HKCSYCKQSFTRKDHLNNHVRLHTGESP 661
H+C C + FT K HLN H R+HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
H+C+ C + FT K HL H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 550 HKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
H+C+ C + FT K HL H R HTG+ P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 522 HRCDFCSKTFTRKEHLLNHVRQHTGESP 549
H+C C + FT K HL H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+QC C + F+ K HL H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETP 437
++C CG+ F+ K H+ H R HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 718 HVCNICSKPFLKKEHLVNHSRSHTGERP 745
H C+ C + F K HL H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 466 HVCQVCGKKYTRKEHLANHMRSHTNDTP 493
H C CG+ +T K HL H R HT + P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 384 CSVCMKTFARKEHLENHTRCHTGETP 409
C C + F K HL H R HTGE P
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 438 HRCEICKKAFTRKEHYVNHVMWHTGETP 465
H+C C + FT K H H HTGE P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC+ CGK F + H+ +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C+ C KAF + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P KC C K+F + HL +H+R+HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P KC C ++F + HL +H+R+HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P KC C K+F + HL +H+R HTG+ P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P KC C K+F + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PFKC C K F HL SHLR H E+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PFKC+ C K+F + H +H+ HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +C C K F + HL +H+R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P C+ CGK + + HLA+H+R HT + P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K F + HL +H R HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P +C+ C KAF + H +H+ HTGE P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P KC C K F + HL +HL+ H GE
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGE 38
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C C K F + HL +H R HTGE+P
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C YCGK F +V H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C YC KAF LV H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ C+YC K+F LV H R HTG+ P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ C+YC K+F LV H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ CD+C K F L+ H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C +C K+F L H R+HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGKAF AEL+ H + H G
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTG 37
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C YC ++F L H R+HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K F L H R HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E +VC+ C K F LV H R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+ CD C K F LV H R H E+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+VC CGK + L H R HT + P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C CGK+F L L+ HQR H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ CD CGK F +++ H+R HT KP
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C+ C KAF V H HTGE P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+ CD+C K F L H + H GE
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGE 38
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
E PY+C C K FSRKD LV+H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
E PY+C CGK FSRK+ +V+H + H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E+P++C C K F+RK+ LV+H + H+G S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
E P+ C +CGK F K L+ HQ++H Q+G
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQSG 40
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
E P+ C C K F+RK+ L++H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
++P++C C K F+RK+ LV+H + H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E+P++C C + F+RKD L +H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E+P++C C K F+RK+ L +H K H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E+P++C C K F+RK+ L +H + H+G+S
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGET 408
+ PY C C K F+RK+ L +H + H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C CGK ++RK+ L +H ++H+ +
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E P+ C C K F+RK+ V+H H+G++
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 717 EHVCNICSKPFLKKEHLVNHSRSHTGERPFACTDCGKSFPLKGNLLFHQRS 767
+++C C K L H R+HT RP+ CT C SF KGNL H +S
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 466 HVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHI 513
++C+ CG + + L H+R+HT+ P+ C C SF K + T H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESPHKCSYCKQSFTRKDHLNNHVR 654
Y C+ C + L H+R HT P+ C+YC SF K +L H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 580 CNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVR 626
C C + L H+R HT PY C YC +F K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 664 CHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQHA 713
C C + L HIR HT P+ C +C +F K +LT H+K A
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 382 YCCSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVR 430
Y C C + L+ H R HT PY C YC +F K ++ H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVR 570
C+ C + L H+R HT P+ C YC SF K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 552 CNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVR 598
C C + L H+R HT P+ C YC SF K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 636 CSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHIR 682
C C + L H+R HT P+ C +C+ SF K +L H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
P+QC+ C + FSR DHL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGE 407
+P+ C C + F+R +HL+ HTR HTGE
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGE 659
P +C C++ F+R DHL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGE 435
P++C+ C + FSR +H+ H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGE 603
P +C C + F+R +HL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGE 687
P +C C + F+R +HL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGE 519
PF+C+ C + F+R +H H HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGE 547
P +C C + F+R +HL H R HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGD 575
P +C C + F+R +HL H R HTG+
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTND 491
P C+ C +K++R +HL H R+HT +
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGER 744
C C + F + +HL H+R+HTGE+
Sbjct: 5 CKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 778 RPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
+PF+C C + F+ HL +H R+H E+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 437 PHRCEICKKAFTRKEHYVNHVMWHTGE 463
P +C+ C++ F+R +H H HTGE
Sbjct: 2 PFQCKTCQRKFSRSDHLKTHTRTHTGE 28
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK F++K ++ H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAF++K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C K+F +K +L H R+HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K FA+K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+RC C K F +K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C C ++F +K +L H R+HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C C K+F +K +L H R HTG+ P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C C K+F +K +L H R HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F K NL HQR H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+RC C KAF +K + H HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C C K+F +K + T H HTGE P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C C K F +K +L H R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++C C K F K +L H R H E+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK + +K +L H R HT + P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P++C C K F +K +LT H + H GE
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGE 38
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGKAF +A L H + H G
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTG 37
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
++PF CT CGKSF KGNL+ HQR H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
+ P++C +CGK+F K ++V H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
+ P++C +C K+F K +LV H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
++PF+C C K F KG+LV+H R H E+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGE 603
P +C +C KSF K +LV H R HTGE
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
+ P +C +C KSF K +LV H R HTG+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
+ P +C++C +SF K +L H R+HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
+ P +C C KSF K +L H R+HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
+ P C C K+F K +L+ H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGE 407
+P+ C+ C K+F K +L H R HTGE
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGE 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F++ H+ H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K FT+ HL H R+HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K FT+ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F++ HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C + FT+ HL H R+HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +T+ HLA H R HT P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + HL H R HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K FT HL H R H +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + HL H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAG 714
E P+KC+ C K FT+ HL H + H G
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K FT+ H H HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C K FT+ H H HTG P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK FS+ + H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAFS+ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K+F++ L H R HTG+ P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K+F++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K+F++ L H R+HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C ++F++ L H R+HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K F++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F++ L H R HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +++ LA H R HT + P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + L H R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K F+ L H R H E+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C KAF++ H HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K+F++ H HTGE P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F L HQR H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C+ CGKAF ++L H + H G
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTG 37
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 487 SHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
S T + PF+C+ C KSF ++ +H M HTGE P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
T E P +C C KSF ++ LN+H +HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
T E P +C C +SF ++ LN+H +HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
T E P RC+ C K+F ++ +H M HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
T E P RCD C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 775 VLERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PF+CD C K F + L SH H E+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
T E P++C C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
T E P++C C K+F ++ + +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
T + P +C+ C KSF ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
T E P +C+ C KSF ++ L +H HTG+ P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+ ++P+ C C K+F ++ L +H HTGE P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
T E P +CD C K+F ++ L +H H GE
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGE 38
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQ 771
E+P+ C +CGK+F ++ NL+ HQ+ H KQ
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQ 38
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P++C CGK +T + +L H + HT P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C C KAF+ + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C CGK F+ + +++ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCH 348
KP+ C CGKAF ++ L+ H K H
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C CGK F R +I H++ HT++KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+ C C K FT + +L+ H + H ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ C C K+FT + +L+ H + HT P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + +L H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ C C K+FT + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K FT + +L+ H + HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C+ C ++FT + +L H ++HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C C K+FT + +L H ++HT + P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKCQ CGK F H+V H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+CQ C KAF HLV H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC VC K F HLV H H ERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C++C KAF H V H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC++C K+F H H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC C K+F HLV H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC C K+F HLV H H+G+ P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C K+F HL H +H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C VC K F HL H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C +C K F HLV H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C C K F HL+ H H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ CQVCGK + HL H H+ + P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC C ++F HL H +H+GE P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C VCGKAF + L+ H H G
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSG 37
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC C K F HL H H+GE
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGE 38
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C KSFT+K L+ H ++HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++CS C +SFT+K L+ H ++HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY CS+C K+F +K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK+F++K + H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C IC KSFT+K H HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K+FT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C+ C KSFT+K L H + HTG+ P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C+ C KSFT+K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K+F++K L H + HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C IC K+FT+K H HTGE P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C +CGK +T+K L H + HT + P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C+IC K F KK L H + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++C +C K FT K L H + H E+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P++C C K+FT+K L H + H GE
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGE 38
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C+ CGKSF K L HQ+ H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C +CGK F + Q+ VH++ HT KP
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K FT+ HLV H HTG+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K FT+ HLV H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F++ H+V H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F++ HLV H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K FT+ HL+ H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K FT+ HL H +HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C + FT+ HL H +HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C K FT+ H V H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K FT HLV H H E+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K FT+ H H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + HLV H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC+ C K FT+ HL H H GE
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGE 38
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +T+ HL H HT + P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C C KAF+ K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+PF C++C K+F K NL+ HQR+H
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PF+C C K F K +L+ H R+H E+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P++C C K F+ K +++ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P +C+ C K+F K +L+ H R HTG+ P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P +C+ C K+F K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P +CS C+++F K +L H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ CS C K F K +L H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P C C K F K +L+ H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P +C C K+F K +L H R HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C+ C K F K +L+ H R+HTGE+P
Sbjct: 15 CSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P C C+KAF K + + H HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PF+C C K+F K + H HTGE P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C CGK FS+K + H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C KTF++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C C K FS+K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ CN C K+F++K L H R HTG+ P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ CN C K+F++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C+ C KTF++K L H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C+ C K+F++K L+ H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C+ C ++F++K L+ H R HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +++K L+ H R+HT + P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F K L HQR+H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F +K L H R+HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+ C+ C K F+ K L +H R+H E+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+ C+ C KTF++K L+ H + H GE
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGE 38
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+ C C K+F++K + H HTGE P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+GE PY C CG F RK+ M HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+GE P+ C VCG ++ RK+ ++ H+RSH
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
+GE PY C C F RKD + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
+GE P+ C C F RKD ++ HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
+GE P+ C C F RK+ + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTG 574
+GE P+ C C F RK+ + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
+GE P+ C C F RK+ ++ H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGET 408
S ++PY C VC F RK+ + H R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G+ P+ C C F RK+ + HVR H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
+GE P+ C C F RK+ ++ H++ H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNGE 774
S +GE+P++C CG F K + +H RSH G+
Sbjct: 2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+GE P+ C +C F RK+ HV H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 37
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
P QC C KAF++ L+ HVRQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGE 603
P +C C K+FT+ L+ HVRQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGE 547
P +C C K FT+ L+ HVRQHTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGD 575
P +C C K+FT+ L+ HVRQHTG+
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGE 435
P +C CGK F++ ++ HVR+HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGE 687
P +C C K+FT+ L H+R HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 437 PHRCEICKKAFTRKEHYVNHVMWHTGE 463
P +C +C KAFT+ + HV HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGE 659
P +C C ++FT+ L HVR HTGE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 689 PHKCDFCLKTFTRKEHLTNHLKQHAGE 715
P +C C K FT+ L H++QH GE
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGER 744
C +C K F + L+ H R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
T E PY+C C KAF R L+ H R H+GES
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 739 SHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S T E+P+ C++CGK+F L+ HQR+H ++G
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGESG 40
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
T E PY+C CGK F R ++ H R H+GE+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
T E P++C+ C K+F R L+ H R H+G+S
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
T + P++C+ C K+F R L+ H R H+GE+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
T E P+ C C K F R L+ H R H+GES
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGET 408
++PY CS C K F R L H R H+GE+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
T E P++CS C ++F R L H R H+GES
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
T E P++C C K+F R L H R H+GES
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 321 TERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
T KP+ C CGKAF ++L+ H + H G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
T E P++C C K F R L H + H+GE+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
T E P+ C CGK + R L H R+H+ ++
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
T E P+ C C KAF R + H H+GE+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 487 SHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
S T + P++C C K+F R H H+GE+
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTHSGES 39
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
E + C+ C K F++ L+ H R+H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KCH C K F R HL H +HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F R H+ H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K F R H H + HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC+ C K F R HL H HTG+ P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC+ C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC C + F R HL H +HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C K F R H H + HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C C K F R HL H HTGE P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK + R HLA H HT + P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC C K F R HL H H GE
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGE 38
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KCS C ++F R HLN H R+HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C K+F R HLN H R+HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F R H+ H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAF R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY CS C K F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC+ C K+F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC+ C K+F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C C K F R HL H R HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K+F R H H HTG P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK + R HL H R HT P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
PYQC C KAFS+ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
PY+C CGK FS+ + H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P++CN C K+F++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
P++CN C K+F++ L H R HTG+ P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
P++C+ C K+F++ L H R+HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+PY C+ C K F++ L H R HTGE P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
P++C+ C K F++ L H R HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
P++C+ C ++F++ L H R+HTGE P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
P+ C CGK +++ LA H R HT + P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
CN C K F + L H R HTGE+P
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C+ CGKAF ++L H + H G
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTG 37
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC CGK+++++ H+ H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P KC C KS+ ++ HL H R+HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P KC C +S+ ++ HL H R+HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P KC C KS+ ++ HL H R HTG+ P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P KC C KS+ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PFKC C KS+ ++ H T H HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C C K+++++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +C C K++ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K++ ++ HL H R HTGE P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PFKC C K + + HL H R H E+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P C CGK Y ++ HL H R HT + P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P KC C K++ ++ HLT H + H GE
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGE 38
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+PF C +CGKS+ + +L HQR H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C C K + ++ HL H R HTGE+P
Sbjct: 15 CGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
E PY+C C KAF+ K +L+ H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
E+P+ C +C K+F K NL+ HQR+H ++G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESG 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P++CN C K+F K +L+ H R HTG+S
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
E P+ C+ C K F K +L+ H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+ P++CN C K+F K +L+ H R HTGE+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
E PY+C C K F+ K +++ H R HTGE+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P++C+ C K+F K +L H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E P++C+ C+++F K +L H R HTGES
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGET 408
++PY C+ C K F K +L H R HTGE+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
E+P++C+ C K F K +L+ H R+H E
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCHLGGS 352
KP+ C+ C KAF+ ++ LM H + H G S
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
E + CN C K F K +L+ H R+HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E P+ C C+KAF K + + H HTGE+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGES 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++CS C +SF +K L+ H R+HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C KSF +K L+ H R+HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY CS C K+F +K L H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E+P+ C+DCGKSF K L HQR H +N
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGEN 39
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK+F +K + H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K+F +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C+ C KSF +K L H R HTG++P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C+ C KSF +K L H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K+F +K L H R HTGE+P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C+ C K F+KK L H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK + +K L H R HT + P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C C KSF +K H HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+RPY C+VC K F + +L H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C C KAF+ + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C CGK F+ + +++ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P++C VCGK +T + +L H + HT + P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E ++C +C K F + +L+ H + HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ C C K+FT + +L+ H + HTG+ P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K FT + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ C C K+FT + +L+ H + HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
ERP+ CT CGK+F + NL+ HQ+ H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C C K+FT + +L H ++HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C +C KAFT + + + H HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
ERP+ C VC K FT + +L+ H + H E+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C+ C ++FT + +L H ++HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
+P+ C VCGKAF ++ L+ H K H G
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+ C +C K+FT + + H HTGE P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C +CGK F R +I H++ HT KP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+ C C K FT + +L H K H GE
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGE 38
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 805 ERPHVCPHCSKSFVEHTCMIKHIRKNHT 832
ERP++C C K+F + + +IKH +K HT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKH-QKIHT 36
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESP 633
Y+C C KAF+RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETP 437
Y+C CGK F+RK ++ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+R Y CS C K FARK L H R HTGE P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
++C+ C K+F RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 550 HKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
++C+ C K+F RK L+ H R HTG+ P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 634 HKCSYCKQSFTRKDHLNNHVRLHTGESP 661
++CS C ++F RK L H R+HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
ER + C++CGK+F K L+ HQR H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 522 HRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+ C C K F RK L+ H R HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 662 HKCHFCSKSFTRKEHLNNHIRLHTGESP 689
++C C K+F RK L H R+HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C+ C K F +K L+ H R HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C CGK F + +I+H+R HT KP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 438 HRCEICKKAFTRKEHYVNHVMWHTGETP 465
+ C C KAF RK + H HTGE P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E YKC CGK FS+ H+ H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+ +KCDVC K+F+ HL +H R H E+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E +KC C K F++ HL H R+HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++ Y C VC K F++ HL+ H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E ++CD C K F++ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+KC+ C K F++ HL H R HTGE P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E Y+C C K FS+ HL H R HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E +KC C + F++ HL H R+HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C++C K F + HL H R HTGE+P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E +KC+ C K F++ HL H R HTG+ P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETP 521
+KC++C K F++ H H HTGE P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 468 CQVCGKKYTRKEHLANHMRSHTNDTP 493
C VCGK++++ HL H R HT + P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E ++C++C K F++ H H HTGE P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E +KCD C K F++ HL H + H GE
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ CD+CGK F + H+R HT KP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
E P+KC CGK F R+ H+ H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
ERPFKC+ C K F + HL HLR H E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHT 573
E P KCN C K F R+ HL H+R H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
+ P KCN C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
E P KC+ C K F R+ HL H+RLH+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
E P++C C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
E P KC+ C + F R+ HL H+RLH+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTND 491
E P C CGK + R+ HLA H+R H+ +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGE 407
+RP+ C+ C K F R+ HL H R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGE 519
+ PFKC C K F R+ H H+ H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P KC+ C K F R+ HL HL+ H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
E P +C+ C K F R+ HL H+R H+ E
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQ 771
ERPF C +CGK F + +L H R H ++
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSRE 38
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GE PY CQ C KAF++ L H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+GE P+VCQ CGK +T+ L+ H R HT ++
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+GE PY CQ CGK F++ + H R HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+GE P+ C C K+FT+ L+ H R+HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+GE P+ C C ++FT+ L+ H R+HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE+P+ C +CGK+F L H+R H ++G
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGESG 38
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+GE P+ C C K+FT+ L H R HTG+S
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+GE P+ C C K FT+ L H R HTGES
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G+ P+ C C K+FT+ L H R HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGET 408
S ++PY C C K F + L H R HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+GE P+ C+ C KAFT+ H HTGE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 804 NERPHVCPHCSKSFVEHTCMIKHIRKNHT 832
E+P+VC C K+F + +C+ H R+ HT
Sbjct: 7 GEKPYVCQECGKAFTQSSCLSIH-RRVHT 34
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
+GE P+ C C K FT+ L+ H + H GE+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P++C+ CGK F++ H+ +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P+QC+ C K F++ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P +C C K FT+ HL++H R+HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P +C C + FT+ HL++H R+HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PF+C+ C K FT HL SH R H E+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +C+ C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P C+ CGK++T+ HL +H R HT + P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PF+CE C K FT+ H +H HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K F + HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P +C C K FT+ HL +H R HTG+ P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P +C C K FT+ HL +H R HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P +CE C K FT+ H +H HTGE P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C C K F + HL +H R HTGE+P
Sbjct: 15 CEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+PF C +CGK F +L HQR H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGES 632
PY C C KAF K +L+ H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGET 604
P+ CN C K+F K +L+ H R HTGE+
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
P+ CN C K+F K +L+ H R HTG+S
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGET 436
PY C CGK F K +++ H R HTGE+
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 718 HVCNICSKPFLKKEHLVNHSRSHTGE 743
+VCN C K F K +L+ H+R+HTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGET 408
+PY C+ C K F K +L HTR HTGE+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGES 548
P+ C+ C K F K +L+ H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 744 RPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
+P+ C +CGK+F K L+ H R+H ++G
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESG 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTNDT 492
P+VC CGK + K +L H R+HT ++
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGES 688
P+ C+ C K+F K +L H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGES 660
P+ C+ C ++F K +L H R HTGES
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGS 352
KP+ C+ CGKAF ++ L+ H + H G S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 778 RPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
+P+ C+ C K F K +L+ H R+H E
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P++C CGK+FS + H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C C K+FS L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+PF C +CGKSF + L HQR H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P +C+ C +SF+ L H R+HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P +C C KSF+ L H R+HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PF+C C K F+ L +H R H E+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C+ C K+F+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P +C C KSF+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P +C C KSF+ L H R HTG+ P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCHLG 350
KPF C CGK+F ++L +H + H G
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTG 37
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P C C K+F+ L H R HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P C CGK ++ LA H R HT + P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PF+C C KSF+ H HTGE P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K FT+ HL H HTG+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F++ H+ H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K FT+ HL H +HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C + FT+ HL H +HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K FT+ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F++ HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + HL H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K FT+ H H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C K FT+ H H HTGE P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +T+ HLA H HT + P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K FT HL H H E+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC+ C K FT+ HL H H GE
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + HL H HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
+GE H+CN C K+F+ K L+ H R HTG+S
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+G+ H+CN C K+F+ K L+ H R HTGE+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
+GE ++C C KAFS K L+ H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE+ C +CGK+F K L+ HQR H ++G
Sbjct: 2 SSGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGESG 38
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
+GE H C+ C K F+ K L+ H R HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHT 321
H C+ CGK F ++ Q+I+H+R HT
Sbjct: 11 HECNNCGKAFSFKSQLIIHQRIHT 34
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
+GE H+C+ C K+F+ K L H R+HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
+GE ++C CGK FS K ++ H R HTGE+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
+GE H+C+ C ++F+ K L H R+HTGES
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGE 743
+GE H CN C K F K L+ H R HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
+GE H C C KAF+ K + H HTGE+
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
+GE H C CGK ++ K L H R HT ++
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGES 37
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+GE P+ CN C K+FT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 36.2 bits (82), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G+ P+ CN C K+FT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+GE PY C C KAF+ K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
S +GE+P++C +CGK+F K L+ H+ H
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVH 33
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
++C+ CGK F ++ Q+IVH+ HT KP
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+GE PY C CGK F+ K ++ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+GE P+ C+ C K FT K L+ H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 321 TERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
+ KP++C+ CGKAF F+++L+ H H G
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+GE P+ C+ C K+FT K L H +HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
+GE P+ C C KAFT K + H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+GE P+ C+ C ++FT K L H +HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
+GE + CN C K F K L+ H HTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+GE P+ C CGK +T K L H HT P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
+G E+P+ C+ C K FT K L+ H H +P
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
S ++PY C+ C K F K L H HTG P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGES 688
E P+ C+ C K+F HLN H+R+HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGET 408
++PY C+VC K F HL H R HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDT 492
E P+ C VCGK + HL H+R HT +T
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGET 436
E PY C CGK F H+ H+R HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E P+ C+ C ++F HLN H+R+HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNE 805
E+P+ C+VC K F HL HLR H E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGET 604
+ P+ CN C K+F HL H+R HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
E PY C C KAF HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P+ CN C K+F HL H+R HT ++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCH 348
KP++C+VCGKAF A L H + H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGES 548
E P+ C+ C K F HL H+R HT E+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGET 716
E P+ C+ C K F HL HL+ H ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGET 520
+ P+ C +C K+F H H+ HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGET 464
E P+ C +C KAF H H+ HT ET
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQ 771
E+P++C CGK+F L +L H R H ++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P KC C K F+R+ LN H +LHTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P KC C + F+R+ LN H +LHTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC CGK FSR+ + H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C C K FSR+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PFKC C K F+R+ H HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P KC C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P KC C K F+R+ L H + HTG+ P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +C C K F+R+ L H + HTGE P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC+ CGK F++ + +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P KC C K FT+ L++H R+HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P KC C + FT+ L++H R+HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PFKC+ C K FT L SH R H E+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PFKCE C K FT+ +H HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +C+ C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P KC C K FT+ L +H R HTG+ P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P KC C K FT+ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C+ C K F++ L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P C+ CGK++T+ L +H R HT + P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K F + L +H R HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P +CE C K FT+ +H HTGE P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+PF C +CGK F L HQR H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KPF C CGK F ++L SH + H G
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTG 37
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P+KCN C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+ P+KCN C K FT+ HL H HTG+ P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
PYKC CGK F++ H+ H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+ P+KC+ C K FT+ HL H +HTGE P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
P++C+ C K FT+ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+ P+KC+ C + FT+ HL H +HTGE P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
PY+C C K F++ HL H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+PY C+ C K F + HL H HTGE P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGETP 521
P+KC C K FT+ H H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 437 PHRCEICKKAFTRKEHYVNHVMWHTGETP 465
P++C C K FT+ H H HTGE P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
P+ C CGK +T+ HLA H HT + P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
++P+KC+ C K FT HL H H E+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
+ P+KC+ C K FT+ HL H H GE
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGE 38
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
CN C K F + HL H HTGE+P
Sbjct: 15 CNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKH 432
E PY C CGKNF R H++ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
ERP+ C+ C K+F HL+ HL+ H E+
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQH 572
E P+ CN C K+F R HL+ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQH 628
E PY C C K F R HL+ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQH 600
+ P+ CN C K+F R HL+ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQH 712
E P+ C+ C K F R HL HLK+H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQH 544
E P+ C+ C K F R HL+ H+++H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 598 RQHTGETPYQCQYCPKAFSRKDHLVNHVRQHTGESPHK--CSYCKQSFTRKDHLNNHVR 654
R H+GE PY+C C F++ + H+ Q E+ K C +C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 570 RQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGE--TPYQCQYCPKAFSRKDHLVNHVR- 626
R H+G+ P++C C FT+ + H+ Q E + C +C +RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 627 QHTGESP 633
QH+ P
Sbjct: 68 QHSYSGP 74
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 654 RLHTGESPHKCHFCSKSFTRKEHLNNHIRLHTGESPHK--CDFCLKTFTRKEHLTNHL-K 710
R H+GE P++C+ C FT+ + HI E+ K C C RK L HL K
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 711 QHA 713
QH+
Sbjct: 68 QHS 70
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 486 RSHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETPHR--CDFCSKTFTRKEHLLNHVR- 542
R+H+ + P++C IC FT+ HI+ E + C C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 543 QHTGESP 549
QH+ P
Sbjct: 68 QHSYSGP 74
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 542 RQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSPHK--CNYCAKSFTRKEHLVNHVR- 598
R H+GE P++C C FT+ + H+ Q ++ K C +C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 599 QHTGETP 605
QH+ P
Sbjct: 68 QHSYSGP 74
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 516 HTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHK--CNYCAKSFTRKEHLVNHVR-QH 572
H+GE P+ C C FT+ + H+ Q E+ K C +C RK L H+R QH
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 573 TGDSP 577
+ P
Sbjct: 70 SYSGP 74
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSH-LRSHL-NERPHVCPHCSKSFVEHTCMIKHIRKNHTLA 834
E+P++C +C FT G + H L+ H N CPHC + + H+RK H+ +
Sbjct: 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 835 N 835
Sbjct: 73 G 73
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 626 RQHTGESPHKCSYCKQSFTRKDHLNNHVRLHTGESPHK--CHFCSKSFTRKEHLNNHIR 682
R H+GE P++C C FT+ + H+ E+ K C C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 430 RKHTGETPHRCEICKKAFTRKEHYVNHVMW-HTGETPHV-CQVCGKKYTRKEHLANHMR 486
R H+GE P+ C IC FT+ H++ HT C C RK L H+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+ PY+C C KAF K L+ H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+ PY+C CGK F K ++ H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
+RP+ C +CGK+F K +L+ H+RSH
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH 35
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P++C C K+F K L+ H R HTGE P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
+RP++C C K F K L+ H RSH E+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+ P++C C K+F K L+ H R HTG+ P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+ P+ C C K F K L+ H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 16/31 (51%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
RPY C C K F K L H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C C K F K L+ H RSHTGE+P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C CGK F + +I HRR HT KP
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+ P+ C CGK + K L H RSHT + P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+ P++C C K+F K L H R HTGE P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ PFKC+IC KSF + H M HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P KC C KSF + LN H +HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P KC C +SF + LN H +HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PFKCD+C K F + L H H E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC CGK+F + + H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P +C+IC K+F + H M HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +CD C K+F + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C +C K+F + L H+ HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P KC+ C KSF + L H HT E P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P KC+ C KSF + L H HT + P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK F+ + ++ H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+RC C K FT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAF+ + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C+ C ++FT + +L H ++HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C K+FT + +L H ++HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C C K+FT + +L H + HTG+ P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+RC C KAFT + + H HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C C K+FT + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F + +L H + HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F + NL HQ+ H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++C C K FT + +L +H + H E+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK +T + +L H + HT + P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGKAF ++ L +H K H G
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C C K+FT + + H HTGE P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P++C+ CGK+FS ++ H R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E PH+C C KSF+ L+ H R HTG++P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ PH+C C KSF+ L+ H R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E PH+C C KSF+ L H R+HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C+ C K+FS L+ H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E PH+C C +SF+ L H R+HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E PH C C K+F+ L+ H R HTGE+P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
H C CGK F + Q+IVH+R HT P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E+P C +CGKSF L+ HQR H +N
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGEN 39
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E PH C+ CGK ++ L H R HT + P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP C CGK+F F ++L+ H + H G
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTG 37
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E PH C C K+F+ + H HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K+F+ L H R HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C+DCGKSF K L HQ+ H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGE 407
++PY CS C K+F K L H +CHTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
E P+KCS C +SFT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
E P+KC C KSFT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
E PYKC CGK+F+ K + H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGK+F +++ L H KCH G
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
E P+KC+ C KSFT K L H + HTG+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
+ P+KC+ C KSFT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+P+KC C K FT K L H + H ER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
E P++C C K+FT K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
E PY+C C K+F+ K L H + HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC C K+FT K L H K H GE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGE 519
+ P+KC C KSFT K H HTGE
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGE 38
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 467 VCQVCGKKYTRKEHLANHMRSHTND 491
VC+VC + + R+EHL H RSHTN+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 381 PYCCSVCMKTFARKEHLENHTRCHTGE 407
+ C VC + FAR+EHL+ H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 719 VCNICSKPFLKKEHLVNHSRSHTGER 744
VC +C++ F ++EHL H RSHT E+
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGE 519
F CE+CT++F R+EH H HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
+ C+ C +AF+R++HL H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGE 547
C+ C++ F R+EHL H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 664 CHFCSKSFTRKEHLNNHIRLHTGE 687
C C+++F R+EHL H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 779 PFKCDVCPKDFTCKGHLVSHLRSHLNER 806
F C+VC + F + HL H RSH NE+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 580 CNYCAKSFTRKEHLVNHVRQHTGE 603
C C ++F R+EHL H R HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGE 435
+ C+ C + F+R+EH+ H R HT E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 440 CEICKKAFTRKEHYVNHVMWHTGE 463
CE+C +AF R+EH H HT E
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNE 28
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTG 406
RPY CSVC K F+ K +E H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTG 434
PY C CGK FS K M H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
+P++C VCGK F + ++ +H + H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSHTN 490
P+ C VCGK+++ K + H R HT
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P CT+CGK+F K L+ HQR+H
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
E P KC C K+F K L+ H R H D
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+P KC C K F K L+ H R+H++++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERK 324
C CGK F ++ Q+I+H+R H + K
Sbjct: 15 CTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC+ CG F + H+ HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC C F + HL HV +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C F + HL H+ +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KCE C F + H H++ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++CE C F + H HV+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C+ C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC C F + HL HV HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C+ CG ++ + HL H+ HT P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C F + HL H HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 744 RPFACTDCGKSFPLKGNLLFHQRSH 768
+P+ C+ C K+F LK L+ HQRSH
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+PY CS C KTF+ K L H R HTG P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P+ C+ CAK+F+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
P+ C+ CAK+F+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
PY C C K FS K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
PY C C K FS K ++ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
P+ C C+KTF+ K L+ H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 778 RPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
+P+ C C K F+ K L+ H RSH +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C C K F + Q+IVH+R HT KP
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
C+ C+K F K L+ H RSHTG +P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
P+ CS C ++F+ K L H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
P+ C C+K+F+ K L H R HTG P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY CSVC K F+ ++ L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK FS ++ + H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAFS + L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C K+F+ ++ L+ H R+H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++CS C ++F+ + L+ H R+H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C +CGK F +R + VH+R H+ +KP
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C VCGK ++ ++ L+ H R H+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C+ C K+F+ ++ L H R H+G P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K F+ ++ L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C+ C K+F+ ++ L H R H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C VCGKAF + L H + H G
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSG 37
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C +C K+F+ ++ + H H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C+ CGK+F + +L HQR H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C +C KAF+ ++ H H+G+ P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 598 RQHTGETPYQCQYCPKAFSRKDHLVNHVRQH 628
R TG P+QC C ++FSR DHL H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 401 TRCHTGETPYKCQYCGKNFSRKEHMVNHVRKH 432
TR TG P++C C ++FSR +H+ H ++H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
+R TG +PF C DC +SF +L H++ H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 542 RQHTGESPHKCNYCAKSFTRKEHLVNHVRQH 572
R TG P +C C +SF+R +HL H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 626 RQHTGESPHKCSYCKQSFTRKDHLNNHVRLH 656
R TG P +C C +SF+R DHL H + H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 570 RQHTGDSPHKCNYCAKSFTRKEHLVNHVRQH 600
R TG P +C C +SF+R +HL H ++H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C+DCGK+F K L HQ+SH
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
E PYKC CGK F+RK + H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
E P+KCS C ++FTRK L+ H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
E PY+C C KAF+RK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
E P+KC C K+FTRK L+ H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
E P+KC+ C K+FTRK L H + HTG+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
+ P+KC+ C K+FTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGE 407
++PY CS C K F RK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
E P++C C K FTRK L H + HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KC C K FTRK L H + H GE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGE 519
+ P+KC C K+FTRK H HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGE 463
E P++C C KAFTRK H HTGE
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTND 491
E P+ C CGK +TRK L H +SHT +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGE 38
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
E+P+KC C K FT K L H +SH ER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 772 NGEVLERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
+G E+PF C C K F+ K +L+ H ++H E+P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQ 771
S +GE+PF C+ C K+F K LL HQ++H ++
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+GE P+ C C KAFS K +L+ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+GE P C C K F+ K +LL H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+GE P+ C C K FS K +++ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
+GE P C C+KAF+ K + + H H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G+ P C+ C K+F+ K +L+ H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+GE P C+ C K+F+ K +L+ H + H + P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
S ++P+ CS C K F+ K +L H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+GE P CS C+++F+ K +L H + H E P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
S +G+R + C +CGKSF KG+L H+R H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+G+ Y+CQ CGK+F +K + H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+G+ Y+CQ C K+F +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+G+ ++C C KSF +K L H R+HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+G+ ++C C KSF +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+G+ ++C C +SF +K L H R+HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G ++C C KSF +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
S R Y C C K+F +K L H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+G+ + CQ CGK + +K L H R HT P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 658 GESPHKCHFCSKSFTRKEHLNNHIRLHTGE-----SPHKCDFCLKTFTRKEHLTNHLK 710
GE ++C CS+ +T H++N R + + C FC K FTRK+++T H+K
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 518 GETPHRCDFCSKTFTRKEHLLNHVRQHTGE-----SPHKCNYCAKSFTRKEHLVNHVR 570
GE +RC CS+ +T H+ N R + + C +C K FTRK+++ HV+
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 574 GDSPHKCNYCAKSFTRKEHLVNHVRQHTGE-----TPYQCQYCPKAFSRKDHLVNHVR 626
G+ ++C C++ +T H+ N R + Y C +C K F+RKD++ HV+
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 630 GESPHKCSYCKQSFTRKDHLNNHVRLHTGE-----SPHKCHFCSKSFTRKEHLNNHIRL 683
GE ++C C + +T H++N R + + C FC K FTRK+++ H+++
Sbjct: 7 GEHTYRCKVCSRVYT---HISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 494 FKCEICTKSFTRKEHFTNHIMW--HTGETPHRCDFCSKTFTRKEHLLNHVR 542
++C++C++ +T +F H + + C FC K FTRK+++ HV+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 434 GETPHRCEICKKAFTRKEHYVNHVMWHTGETPHV--CQVCGKKYTRKEHLANHMR 486
GE +RC++C + +T ++ H + V C C K++TRK+++ H++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 777 ERPFKCDVCPKDFT-----CKGHLVSHLRSHLNERPHVCPHCSKSFVEHTCMIKHIRKNH 831
E ++C VC + +T C+ ++ SH R N + + CP C K F M H++ H
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Query: 832 TL 833
+
Sbjct: 65 KI 66
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 487 SHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
S T + PFKC C K+F+ H + H + H GE P
Sbjct: 6 SGTKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
T E P+KC CGK FS H+ H H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P KCN C K+F+ HL H H GE P
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
T E P KC+ C K+F+ HL+ H +H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
T E P KCN C K+F+ HL H H G++P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
T E P KC+ C ++F+ HL+ H +H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
T E P++C C K FS HL H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
T E P +C+ C KTF+ HL H H GE+P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+ P+ C+ C KTF+ HL H H GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 685 TGESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
T E P KC+ C KTF+ HL+ H HAGE
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGE 38
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E PFKC+ C K F+ HL H H E P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
T E P +C C K F+ H H + H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 300 CDL--CGKFFPYRYQMIVHRRY-HTERKPFTCH--VCGKAFDFQAELMSHGKCHLGGSMY 354
CD CG+ F R + H++Y H +K F+C CGK+F+F+ L H K H Y
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 355 TC 356
C
Sbjct: 70 IC 71
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 685 TGESPHKCDF--CLKTFTRKEHLTNHLK-QHAGETEHVCN--ICSKPFLKKEHLVNHSRS 739
+G S CDF C + F+ +++L +H K QH + C C K F K+HL H +
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 740 HTGERPFACTDCGKS 754
H+ R + C G S
Sbjct: 63 HSDTRDYICEFSGPS 77
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 359 CFHVFANEESLQRHTKRHSI-DRPYCCS--VCMKTFARKEHLENHTRCHTGETPYKCQYC 415
C +F+N + L H K I + + C C K+F K+HL+ H + H+ Y C++
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 416 G 416
G
Sbjct: 75 G 75
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 657 TGESPHKCHF--CSKSFTRKEHLNNHIRL-HTGESPHKCD--FCLKTFTRKEHLTNHLKQ 711
+G S C F C + F+ +++LN+H + H + C C K+F K+HL H+K
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 712 HAGETEHVCNI 722
H+ +++C
Sbjct: 63 HSDTRDYICEF 73
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 517 TGETPHRCDF--CSKTFTRKEHLLNHVR-QHTGESPHKCN--YCAKSFTRKEHLVNHVRQ 571
+G + CDF C + F+ +++L +H + QH + C C KSF K+HL H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 572 HTGDSPHKCNYCAKS 586
H+ + C + S
Sbjct: 63 HSDTRDYICEFSGPS 77
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 629 TGESPHKCSY--CKQSFTRKDHLNNHVRL-HTGESPHKCH--FCSKSFTRKEHLNNHIRL 683
+G S C + C + F+ + +LN+H + H + C C KSF K+HL H++L
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 684 HTGESPHKCDF 694
H+ + C+F
Sbjct: 63 HSDTRDYICEF 73
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 545 TGESPHKCNY--CAKSFTRKEHLVNHVR-QHTGDSPHKCN--YCAKSFTRKEHLVNHVRQ 599
+G S C++ C + F+ +++L +H + QH C C KSF K+HL H++
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 600 HTGETPYQCQY 610
H+ Y C++
Sbjct: 63 HSDTRDYICEF 73
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 471 CGKKYTRKEHLANHMR-SHTNDTPFKCE--ICTKSFTRKEHFTNHIMWHTGETPHRCDF 526
CG+ ++ +++L +H + H + F C C KSF K+H H+ H+ + C+F
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 601 TGETPYQCQY--CPKAFSRKDHLVNHVR-QHTGESPHKCS--YCKQSFTRKDHLNNHVRL 655
+G + C + C + FS + +L +H + QH + C C +SF K HL H++L
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 656 HTGESPHKCHFCSKS 670
H+ + C F S
Sbjct: 63 HSDTRDYICEFSGPS 77
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 433 TGETPHRCEI--CKKAFTRKEHYVNH--VMWHTGETPHVCQ--VCGKKYTRKEHLANHMR 486
+G + C+ C + F+ ++ Y+NH H + C CGK + K+HL HM+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQ-YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 487 SHTNDTPFKCEICTKS 502
H++ + CE S
Sbjct: 62 LHSDTRDYICEFSGPS 77
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 405 TGETPYKCQY--CGKNFSRKEHMVNHVR-KHTGETPHRCE--ICKKAFTRKEHYVNHVMW 459
+G + C + CG+ FS ++++ +H + +H + C C K+F K+H H+
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 460 HTGETPHVCQVCG 472
H+ ++C+ G
Sbjct: 63 HSDTRDYICEFSG 75
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 387 CMKTFARKEHLENHTRC-HTGETPYKCQ--YCGKNFSRKEHMVNHVRKHTGETPHRCEI 442
C + F+ +++L +H + H + + C CGK+F+ K+H+ H++ H+ + CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F ++ H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K F +L+ H R+HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K F +L H R HTG+ P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C + F +L+ H R+HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K F +L H R HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F +L H R HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K F +L H R H E+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C CGK + +L+ H R HT + P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K F + + H HTGE P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E YKC CGK FSR + H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E +KC+ C K F+R L+ H ++HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+KCN C K F+R L H + HTGE P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E Y+C C K FSR L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E +KCN C K F+R L H + HTG+ P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E +KC+ C + F+R L+ H ++HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++ Y C+ C K F+R L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E ++C+ C K F+R L H + HTGE P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + CN C K F + L H + HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETP 521
+KC C K F+R + H HTGE P
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E +KC+ C K F+R L+ H K H GE
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGE 38
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAFS L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C VC K F+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P++CDVC K F+ L H R H E+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ CD C K F+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C C K+F+ L H R+H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C C+++F+ L H R+H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C C K FS + H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P++CD C K F+ LT H + H+GE
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGE 38
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C++C K+F+ T H H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ C++C+KAF+ H H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++C+ C K+F+ L H R H+GE P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++C+ C K+F+ L H R H+G+ P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC+ CGK ++ K ++ H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C K + K +L+ H ++HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C+ C K ++ K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC C + + K +L+ H ++HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K + K +L+ H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K + K +L H + H ERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C+ CGK Y K +L H + HT + P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KCE C K + K + H HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC C K + K +L H + HTGE P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC C K + K +L H + HTG+ P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C CGK + K NL HQ+ H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVH 35
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 467 VCQVCGKKYTRKEHLANHMRSHTND 491
VC+VC + + R+E+L H RSHTN+
Sbjct: 4 VCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 381 PYCCSVCMKTFARKEHLENHTRCHTGE 407
+ C VC + FAR+E+L+ H R HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 719 VCNICSKPFLKKEHLVNHSRSHTGER 744
VC +C++ F ++E+L H RSHT E+
Sbjct: 4 VCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGE 519
F CE+CT++F R+E+ H HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
+ C+ C +AF+R+++L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNE 28
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGE 547
C+ C++ F R+E+L H R HT E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 664 CHFCSKSFTRKEHLNNHIRLHTGE 687
C C+++F R+E+L H R HT E
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNE 28
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E Y C+ CGK+FSR ++ H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E Y C+ C K+FSR L+ H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ C C KSF+R L+ H R H+GE P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E + C C K+F+R LL H R H+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E + C C KSF+R L H RLH+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E + C C KSF+R L+ H R H+G+ P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E + C C +SF+R L H RLH+GE P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C KSF L H R+HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KCDVC K F L H R H E+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++CD C K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC C +SF L H R+HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C VC K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC++C KSF T H HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC C K+F + H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC+ C KSF L H R HTG+ P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC+ C KSF L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C K+F L H R HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 687 ESPHKCDFCLKTFTRKEHLTNHLKQHAGE 715
E P+KCD C K+F LT H + H GE
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGE 38
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ CD+C K F Y + VH+R HT KP
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C++C K+F H HTGE P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E + C++C K F L H R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGE 659
P++C C+++F + HLN H R+HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGE 407
+PY C C KTF + HL H R HTGE
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGE 687
P++C C K+F + HLN H R+HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
PY+C+ C K F + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGE 547
P+ C C KTF + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGE 603
P++C C K+F + HL H R HTGE
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGE 38
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNER 806
++P++C C K F GHL H R H ER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C+ CGK F + H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C+ C KAF L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K F L+ H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C C K+F L H R+HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C C ++F L H R+HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C+ C K F L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ C C K+F L H R HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ C C K+F L H R HTG+ P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P+ CE C KAF H HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C+ CGK + L H R HT + P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 323 RKPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C CGKAF ++L H + H G
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTG 37
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+ CE C K+F H HTGE P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
ETP++C CGK +T++ LA H RS + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRS 767
E P+ C CGKSF +G+L HQRS
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
ETPY C CGK+F+++ + H R + P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQ 771
E PF C++CGK F K NL+ HQ+ H +
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGE 38
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+ C CGK F+ K +++ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P+ C C K F+ K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P C C K FT K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E+P C+ C K FT K +L+ H + HTG+ P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E+P CS C + FT K +L H ++HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
++P C+ C K FT K +L+ H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+ P+ CS C K F K +L H + HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E +C+ C K F K +L+ H + HTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P +C CGK +T K +L H + HT + P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E PF C C K FT K +L+ H + H ERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E+P C C K FT K +L H ++HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 300 CDLCGKFFPYRYQMIVHRRYHTERKP 325
C CGK F ++ +I+H++ HT +P
Sbjct: 15 CSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P C C K FT K + + H HTGE P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+PFKC+ C K F SH RSH E+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+KC+ CGK F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+PF C +CGK F HQRSH
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P++C+ C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P +C+ C K F +H R H+GE P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C+ CGK+F ++ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C+ C K+F L+ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGKSF LL HQR H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C C K+F LL H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+ C C KSF L+ H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+ C C KSF L+ H R H+G+ P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C C KSF L H R+H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C C K+F L H R H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C C +SF L H R+H+GE P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAFS + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY+C CGK FS + + H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P++CN C K+F+ + L H HTG P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P++C+ C K+F+ + L H +HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P++CN C K+F+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P++C+ C ++F+ + L H +HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C+ CGKAF ++ L +H H G
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C CGK+F ++ +L HQ H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P++C C K+F+ + T H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P+ C+ C K F+ + L H HTG+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
+ C+ CGK F R + H+ HT +KP
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+GE H+CS C+++F+ L H R+HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+GE H C C KTF+ L+ H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G+ H+C+ C K+F+ LV H R HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+GE H+C+ C K+F+ LV H R HTG++P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
+GE ++C C K FS LV H R HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+GE H+C C K+F+ L H R+HTGE+P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+GE ++C C K FS +V H R HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 298 HTCDLCGKFFPYRYQMIVHRRYHTERKP 325
H C C K F + Q+++H+R HT P
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
+GE H C+ C K F LV H R HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
+GE H C C+K F+ V H HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNGEVLERP 779
E+P+ C +CGK + + +L FHQR H GE L P
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH---TGEKLSGP 43
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
E PYKC CGK + R+ + H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
E P+KC C K + R+ L+ H R+HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
E P+KC C + + R+ L+ H R+HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGE 407
++PY C C K + R+ L+ H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
E PY+C C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
E P+KC C K + R+ L H R HTG+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
+ P+KC C K + R+ L H R HTGE
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTND 491
E P+ C CGK Y R+ L H R HT +
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGE 38
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
E PYKC+ CGK ++R+ ++ H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
E P+KC C K + R+ +L+ H R+H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C DCGK + + NL HQR H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 378 IDRPYCCSVCMKTFARKEHLENHTRCHTGE 407
+++PY C C K + R+ +L+ H R H GE
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
E PY+C+ C K ++R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
E P+KC C + + R+ +L+ H R+H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGE 547
E P++C+ C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
E P+KC C K + R+ +L H R H G+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
+ P+KC C K + R+ +L H R H GE
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTND 491
E P+ C+ CGK Y R+ +L H R H +
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGE 38
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 471 CGKKYTRKEHLANHMRSHTNDTPFKC--EICTKSFTRKEHFTNHIMWHTG---ETPHRCD 525
CGK + + L H SHT P++C E C K F+ H H G + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 526 FCSKTFT 532
F KT+T
Sbjct: 69 FVGKTWT 75
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 583 CAKSFTRKEHLVNHVRQHTGETPYQC--QYCPKAFSRKDHLVNHVRQHTG---ESPHKCS 637
C K+F + L H HT + PY+C + C K FS L H + H G + CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 638 YCKQSFT 644
+ +++T
Sbjct: 69 FVGKTWT 75
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSHGKCHLG 350
CGK F Q+ VH+ HT++ P+ C C K F + L H K H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 664 CHF--CSKSFTRKEHLNNHIRLHTGESPHKC--DFCLKTFTRKEHLTNHLKQHAG 714
CHF C K+F + L H HT + P++C + C K F+ L H K HAG
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 387 CMKTFARKEHLENHTRCHTGETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICK 444
C K F + L+ H HT + PY+C + C K FS + H + H G + + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 445 KAFTRKEHYVNHV 457
Y+ HV
Sbjct: 69 FVGKTWTLYLKHV 81
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 639 CKQSFTRKDHLNNHVRLHTGESPHKC--HFCSKSFTRKEHLNNHIRLHTG---ESPHKCD 693
C ++F + + L H HT + P++C C K F+ L H ++H G + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 694 FCLKTFT 700
F KT+T
Sbjct: 69 FVGKTWT 75
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 718 HVCNI--CSKPFLKKEHLVNHSRSHTGERPFAC--TDCGKSFPLKGNLLFHQRSH 768
+VC+ C K F K L H SHT + P+ C C K F L L H++ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F + + H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K+F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K+F + L H H+G+ P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAF + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F + +L HQ +H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K F + L H +H E+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K+F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C ++F + L H H+GE P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 471 CGKKYTRKEHLANHMRSHTNDTPFKC--EICTKSFTRKEHFTNHIMWHTG---ETPHRCD 525
CGK + + L H SHT P++C E C K F+ H H G + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 526 FCSKTFT 532
F KT+T
Sbjct: 69 FVGKTWT 75
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 583 CAKSFTRKEHLVNHVRQHTGETPYQC--QYCPKAFSRKDHLVNHVRQHTG---ESPHKCS 637
C K+F + L H HT + PY+C + C K FS L H + H G + CS
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 638 YCKQSFT 644
+ +++T
Sbjct: 69 FVGKTWT 75
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 303 CGKFFPYRYQMIVHRRYHTERKPFTC--HVCGKAFDFQAELMSHGKCHLG 350
CGK F Q+ VH+ HT++ P+ C C K F + L H K H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 664 CHF--CSKSFTRKEHLNNHIRLHTGESPHKC--DFCLKTFTRKEHLTNHLKQHAG 714
CHF C K+F + L H HT + P++C + C K F+ L H K HAG
Sbjct: 4 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 387 CMKTFARKEHLENHTRCHTGETPYKC--QYCGKNFSRKEHMVNHVRKHTGETPHRCEICK 444
C K F + L+ H HT + PY+C + C K FS + H + H G + + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 445 KAFTRKEHYVNHV 457
Y+ HV
Sbjct: 69 FVGKTWTLYLKHV 81
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 639 CKQSFTRKDHLNNHVRLHTGESPHKC--HFCSKSFTRKEHLNNHIRLHTG---ESPHKCD 693
C ++F + + L H HT + P++C C K F+ L H ++H G + C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 694 FCLKTFT 700
F KT+T
Sbjct: 69 FVGKTWT 75
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 718 HVCNI--CSKPFLKKEHLVNHSRSHTGERPFAC--TDCGKSFPLKGNLLFHQRSH 768
+VC+ C K F K L H SHT + P+ C C K F L L H++ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C K+F H RLHTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAF H R HTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC C ++F H RLHTG+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC C K+F H R HTG P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 635 KCSYCKQSFTRKDHLNNHVRLHTGESP 661
KC+ CK++FT+ L H R+HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 579 KCNYCAKSFTRKEHLVNHVRQHTGETP 605
KCN C K+FT+ L H R HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 663 KCHFCSKSFTRKEHLNNHIRLHTGESP 689
KC+ C K+FT+ L H R+HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 551 KCNYCAKSFTRKEHLVNHVRQHTGDSP 577
KCN C K+FT+ L H R HTG+ P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 523 RCDFCSKTFTRKEHLLNHVRQHTGESP 549
+C+ C KTFT+ L H R HTGE P
Sbjct: 14 KCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETP 521
FKC C K+FT+ T H HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 720 CNICSKPFLKKEHLVNHSRSHTGERP 745
CN C K F + L H R HTGE+P
Sbjct: 15 CNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESP 633
++C C K F++ L H R HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 382 YCCSVCMKTFARKEHLENHTRCHTGETP 409
+ C+ C KTF + L H R HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+KC C K F++ + H R HTGE P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 555 CAKSFTRKEHLVNHVRQHTGDSPHKCNYC---------AKSFTRKEHLVNHVRQHTGE 603
C ++F+ LV HV P + N+ KSF K LVNH+R HTGE
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 527 CSKTFTRKEHLLNHVRQHTGESPHKCNYC---------AKSFTRKEHLVNHVRQHTGD 575
C +TF+ L+ HV P + N+ KSF K LVNH+R HTG+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 583 CAKSFTRKEHLVNHVRQHTGETPYQ------CQYCP---KAFSRKDHLVNHVRQHTGE 631
C ++F+ LV HV P Q + CP K+F K LVNH+R HTGE
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 639 CKQSFTRKDHLNNHVRL-HTGESPHKCHFC--------SKSFTRKEHLNNHIRLHTGE 687
C ++F+ L HV + H G H C KSF K L NHIR+HTGE
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 363 FANEESLQRHTKRHSIDRPYCCSVCMKTFARKEHL----ENHTRCHTGETPYKCQYCGKN 418
+ +E L R K S DR + + T EH+ +N+ C+ E P + GK+
Sbjct: 18 WIDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE----GKS 71
Query: 419 FSRKEHMVNHVRKHTGE 435
F K +VNH+R HTGE
Sbjct: 72 FKAKYKLVNHIRVHTGE 88
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 611 CPKAFSRKDHLVNHV-RQHTG---ESPHKCSYCK-----QSFTRKDHLNNHVRLHTGE 659
C + FS LV HV +H G ++ H C + + +SF K L NH+R+HTGE
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE 88
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 695 CLKTFTRKEHLTNHLK-QHAGETEHVCNIC--------SKPFLKKEHLVNHSRSHTGER 744
C +TF+ L H+ +H G E ++C K F K LVNH R HTGE+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
E+P+ C +CGK+F K L+ H+R+H +G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSG 40
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E P++CN C K+F K L+ H R H G S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
E PY+C C KAF K L+ H R H G S
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTG 434
E PY+C CGK F K ++ H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLGGS 352
KP+ C+ CGKAF +++ L+ H + H G S
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTG 602
+ P++CN C K+F K L+ H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 467 VCQVCGKKYTRKEHLANHMRSHTND 491
VC+VC + + R+E L H RSHTN+
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNE 28
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 381 PYCCSVCMKTFARKEHLENHTRCHTGE 407
+ C VC + FAR+E L+ H R HT E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 719 VCNICSKPFLKKEHLVNHSRSHTGER 744
VC +C++ F ++E L H RSHT E+
Sbjct: 4 VCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGE 519
F CE+CT++F R+E H HT E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
+ C+ C +AF+R++ L H R HT E
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNE 28
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 635 KCSYCKQSFTRKDHLNNHVRLHTGESP 661
+C+ C ++FTRK L+ H ++HTGE P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESP 633
++C C KAF+RK L H + HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 663 KCHFCSKSFTRKEHLNNHIRLHTGESP 689
+C C K+FTRK L+ H ++HTGE P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 579 KCNYCAKSFTRKEHLVNHVRQHTGETP 605
+C C K+FTRK L H + HTGE P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETP 437
++C CGK F+RK + H + HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 551 KCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+C C K+FTRK L H + HTG+ P
Sbjct: 14 ECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 494 FKCEICTKSFTRKEHFTNHIMWHTGETP 521
F+C C K+FTRK + H HTGE P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 524 CDFCSKTFTRKEHLLNHVRQHTGESP 549
C C K FTRK L H + HTGE P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 384 CSVCMKTFARKEHLENHTRCHTGETP 409
C+ C K F RK L H + HTGE P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 468 CQVCGKKYTRKEHLANHMRSHTNDTP 493
C CGK +TRK L+ H + HT + P
Sbjct: 15 CTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 746 FACTDCGKSFPLKGNLLFHQRSH 768
F CT+CGK+F K L HQ+ H
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 715 ETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
E H C+ C K FL+ + + H R HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 297 NHTCDLCGKFFPYRYQMIVHRRYHTERKP 325
H C CGKFF I HRR HT KP
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E HRC C K F + + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E HRC C K F + +++ H HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETP 605
H+C+ C K F + + + H R HTGE P
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E H+C+ C K F + + + H R HTG+ P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E H+CS C + F + + H R+HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E ++C CGK F + + + H R HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E H+C C K F + + H R+HTGE P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQH 628
TG P+QC C +FSR DHL H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKH 432
TG P++C C +FSR +H+ H ++H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC CGK F ++ H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C C KAF +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KCN C K+F +L H HTG+ P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC+ C K+F +L H +HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KCN C K+F +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+KC+ C ++F +L H +HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KC C K+F + T H + HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++C C KAF + H + HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K F +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSH 768
E+P+ C +CGK+F NL HQ H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K F +L +H H E+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C+ C K F +L H HTGE P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P+KC+ C KSF+ K L+ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
PY+C C K+FS K L+ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
P+KCS C++SF+ K L H R+HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
PYKC C K+FS K ++ H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
P+KC+ C KSF+ K L+ H R HT + P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 521 PHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
P++C C K+F+ K LL H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
P+KC C KSF+ K L H R+HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 779 PFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
P+KC C K F+ K L+ H R H E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 381 PYCCSVCMKTFARKEHLENHTRCHTGETP 409
PY CS C K+F+ K L H R HT E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 745 PFACTDCGKSFPLKGNLLFHQRSHRKQ 771
P+ C+ C KSF K LL HQR H ++
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTRE 38
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PYKC+ CGK F + + H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSHLNERP 807
E+P+KC+ C K F C+ L +H H E+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 491 DTPFKCEICTKSFTRKEHFTNHIMWHTGETP 521
+ P+KCE C K F + H M HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 435 ETPHRCEICKKAFTRKEHYVNHVMWHTGETP 465
E P++CE C K F + H M HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+KC C K F + L H +HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY+C+ C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
E P+KC C K F + L H HTG+ P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 575 DSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+ P+KC C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 519 ETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
E P++C+ C K F + L H HTGE P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 578 HKCNYCAKSFTRKEHLVNHVRQHTGETPYQCQYCPKAFSRKDHLVNHVRQ 627
H C C +SF K H+R + C+YCP F L H+ +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 466 HVCQVCGKKYTRKEHLANHMRSHTNDTPFKCEICTKSFTRKEHFTNHI 513
H+C VCG+ + K H+R F C+ C +F T HI
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 662 HKCHFCSKSFTRKEHLNNHIRLHTGESPHKCDFCLKTFTRKEHLTNHLKQ 711
H C C +SF K H+RL C +C TF LT H+ +
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 384 CSVCMKTFARKEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRK 431
C VC ++FA K E H R + C+YC F + H+ K
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 634 HKCSYCKQSFTRKDHLNNHVRLHTGESPHKCHFCSKSFTRKEHLNNHI 681
H C C +SF K H+RL C +C +F L HI
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 465 PHVCQVCGKKYTRKEHLANHMRSH 488
P+VC+ CGK++ + LANH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKH 432
PY C+ CGK F + + NH+R H
Sbjct: 2 PYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P C C K+F+ LN H R+HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P C C ++F+ LN H R+HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E P+ C C KAFS L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P+ C CGK FS + H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++P+ C C K F+ L H R HTGE P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
T E P+KC+ C K+F + +L H +HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 487 SHTNDTPFKCEICTKSFTRKEHFTNHIMWHTGE 519
S T + P+KC C K+F + + T H + HTGE
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
T E PYKC CGK F + ++ H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 739 SHTGERPFACTDCGKSFPLKGNLLFHQRSH 768
S T E+P+ C +CGK+F + NL HQ H
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHTGE 631
T E PY+C C KAF + +L H HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 321 TERKPFTCHVCGKAFDFQAELMSHGKCHLG 350
T+ KP+ C+ CGKAF ++ L +H H G
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
T E P+KC C ++F + +L H +HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 433 TGETPHRCEICKKAFTRKEHYVNHVMWHTGE 463
T E P++C C KAF + + H + HTGE
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGE 38
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
ER + C++CGK+F K L HQR HR +
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEK 39
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+R Y CS C K F +K L H R H GE P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 634 HKCSYCKQSFTRKDHLNNHVRLHTGESP 661
++CS C ++F +K L+ H R+H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGESP 633
Y+C C KAF +K L H R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 410 YKCQYCGKNFSRKEHMVNHVRKHTGETP 437
Y+C CGK F +K + H R H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 662 HKCHFCSKSFTRKEHLNNHIRLHTGESP 689
++C C K+F +K L+ H R+H GE P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E PY C+ CG F + + +H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 659 ESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
E P+ C C F + L +H+R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 463 ETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
E P+ C++CG ++ + L +H+R HT P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 379 DRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
++PY C +C F + L++H R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
E P+ C C F L +H+R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
E PY C+ C F L +H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 601 TGETPYQCQYCPKAFSRKDHLVNHVRQHT 629
+GE PY C C + FS + LV H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHT 657
+GE P+ C+ CK++F+ + L H ++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 737 SRSHTGERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
S +GE+P++C +C ++F L+ HQ+ H ++G
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSG 38
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHT 433
+GE PY C C + FS +V H + HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 601 TGETPYQCQY--CPKAFSRKDHLVNHVRQH 628
TG P+QC + C ++FSR DHL H ++H
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 637 SYCKQSFTRKDHLNNHVRLHTGE 659
SYC + FTR D L H R HTGE
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGE 30
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 605 PYQC--QYCPKAFSRKDHLVNHVRQHTGE 631
P+ C YC K F+R D L H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 409 PYKC--QYCGKNFSRKEHMVNHVRKHTGE 435
P+ C YCGK F+R + + H R HTGE
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 380 RPYCC--SVCMKTFARKEHLENHTRCHTGE 407
RP+ C S C K F R + L+ H R HTGE
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 581 NYCAKSFTRKEHLVNHVRQHTGE 603
+YC K FTR + L H R HTGE
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 553 NYCAKSFTRKEHLVNHVRQHTGD 575
+YC K FTR + L H R HTG+
Sbjct: 8 SYCGKRFTRSDELQRHKRTHTGE 30
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 666 FCSKSFTRKEHLNNHIRLHTGE 687
+C K FTR + L H R HTGE
Sbjct: 9 YCGKRFTRSDELQRHKRTHTGE 30
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
PY C C KAFS L H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
PY C CGK FS + H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 577 PHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
P+ CN C K+F+ L H HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGETP 409
+PY C+ C K F+ L H HTGE P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
P+ C+ C K+F+ L H +HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
P+ CN C K+F+ L H HTG+ P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 324 KPFTCHVCGKAFDFQAELMSHGKCHLG 350
KP+ C+ CGKAF + L +H H G
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTG 37
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 493 PFKCEICTKSFTRKEHFTNHIMWHTGETP 521
P+ C C K+F+ T H + HTGE P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 660 SPHKCHFCSKSFTRKEHLNNHIRLHTGE 687
P KC C K FT +L H+R+H+GE
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 779 PFKCDVCPKDFTCKGHLVSHLRSHLNER 806
P KC C K FT G+L HLR H E+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGE 435
P KC+ CGK F+ ++ H+R H+GE
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 632 SPHKCSYCKQSFTRKDHLNNHVRLHTGE 659
P KC C + FT +L H+R+H+GE
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGE 28
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 576 SPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
P KC C K FT +L H+R H+GE
Sbjct: 1 GPLKCRECGKQFTTSGNLKRHLRIHSGE 28
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 805 ERPHVCPHCSKSFVEHTCMIKHIRKNHT 832
++P+ C C K+F+++T +I+H R HT
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHT 37
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVR-QHTGESP 633
PY+C C KAF + L+ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVR-KHTGETP 437
PY+C CGK F + ++ H R HTGE P
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 573 TGDSPHKCNYCAKSFTRKEHLVNHVRQHTGETP 605
+G P CN C K+F + L H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 657 TGESPHKCHFCSKSFTRKEHLNNHIRLHTGESP 689
+G+ P C+ C K+F + L+ H R+H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 377 SIDRPYCCSVCMKTFARKEHLENHTRCHTGETP 409
S +P C+ C KTF + L H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 405 TGETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
+G+ P C CGK F + + H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 517 TGETPHRCDFCSKTFTRKEHLLNHVRQHTGESP 549
+G+ P C+ C KTF + L H R H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 713 AGETEHVCNICSKPFLKKEHLVNHSRSHTGERP 745
+G+ VCN C K F + L H R H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 545 TGESPHKCNYCAKSFTRKEHLVNHVRQHTGDSP 577
+G+ P CN C K+F + L H R H+G+ P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP 493
+G+ P VC CGK + + L+ H R H+ + P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 629 TGESPHKCSYCKQSFTRKDHLNNHVRLHTGESP 661
+G+ P C+ C ++F + L+ H R+H+GE P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGE 659
P+ C +C++ F L HVR+HTGE
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGE 29
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 380 RPYCCSVCMKTFARKEHLENHTRCHTGE 407
+PY C C + FA L+ H R HTGE
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 719 VCNICSKPFLKKEHLVNHSRSHTGERPFA 747
C IC K F HL H SH+GE+P++
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 383 CCSVCMKTFARKEHLENHTRCHTGETPY 410
C +C K F HL H H+GE PY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 496 CEICTKSFTRKEHFTNHIMWHTGETPH 522
CEIC K F H H + H+GE P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTN 490
+G+ P VC++C +T K + A H++ HT+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTD 32
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 407 ETPYKCQY--CGKNFSRKEHMVNHVRKHTGETP 437
E P+ C + CG FSR + + H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 603 ETPYQCQY--CPKAFSRKDHLVNHVRQHTGESP 633
E P+ C + C FSR D L H R H+G P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 777 ERPFKCDVCPKDFTCKGHLVSHLRSH 802
E PFKC C + FT + +LV H R+H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 603 ETPYQCQYCPKAFSRKDHLVNHVRQHTGES 632
E P++C C + F+++++LV H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 547 ESPHKCNYCAKSFTRKEHLVNHVRQHTGDS 576
E+P KC+ C + FT++ +LV H R H S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 631 ESPHKCSYCKQSFTRKDHLNNHVRLHTGES 660
E+P KCS C + FT++++L H R H +S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQNG 773
E PF C+ C + F + L+ H+R+H +++G
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 661 PHKCHFCSKSFTRKEHLNNHIRLHTGE 687
P+KC CS + K +LN H+R HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 633 PHKCSYCKQSFTRKDHLNNHVRLHTGE 659
P+KC C + K +LN H+R HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGE 631
PY+C C A + K +L H+R+HTGE
Sbjct: 9 PYKCPQCSYASAIKANLNVHLRKHTGE 35
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 461 TGETPHVCQVCGKKYTRKEHLANHMRSHTNDTP---FKCEICTKSFTRKEHFTNH 512
+G + C++CG +K L H R H F CE C K F + + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 409 PYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
PY+C CGK+FS + H HT E P
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 605 PYQCQYCPKAFSRKDHLVNHVRQHTGESP 633
PYQC C K+FS L H HT E P
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 297 NHTCDLCGKFFPYRYQMIVHRRYHTERK 324
+HTCD CGK F Y + +H+R H K
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 715 ETEHVCNI--CSKPFLKKEHLVNHSRSHTGER 744
+ +H+C+I C K + K HL H R HTGER
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 407 ETPYKCQYCGKNFSRKEHMVNHVRKHTGETP 437
E P++C+ CG NFS + H+R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 743 ERPFACTDCGKSFPLKGNLLFHQRSHRKQN 772
E+PF C +CG +F +L H RSH + +
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 606 YQCQYCPKAFSRKDHLVNHVRQHTGE 631
+ C CPK F R DHL H++ H +
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNK 28
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 549 PHKCNYCAKSFTRKEHLVNHVRQHTGDSPHKCNYCAKSFTRKEHLVNHVRQHTGE 603
P KC+ C+ S + K L H R H D P KCNYC+ + +L H+++ G+
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 534 KEHLLNHVRQHTGESPHKCNYCAKSFTRKEHLVNHVRQHTGD 575
K L H R H + P KCNYC+ + +L H+++ GD
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 394 KEHLENHTRCHTGETPYKCQYCGKNFSRKEHMVNHVRKHTGE 435
K L H R H + P+KC YC + + ++ H++K G+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,532,258
Number of Sequences: 62578
Number of extensions: 936205
Number of successful extensions: 5737
Number of sequences better than 100.0: 190
Number of HSP's better than 100.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2034
Number of HSP's gapped (non-prelim): 3268
length of query: 896
length of database: 14,973,337
effective HSP length: 108
effective length of query: 788
effective length of database: 8,214,913
effective search space: 6473351444
effective search space used: 6473351444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)