BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16261
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+I P + + A + T C VESYP+P WT N LI ++ ++S +
Sbjct: 9 VITTPLETVDALVEEVATFMCAVESYPQPEISWTR-NKILI------KLFDTRYSIRENG 61
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGS 87
L I S+ SD G Y C A N +GG+
Sbjct: 62 QLLTILSVEDSDDGIYCCTANNGVGGA 88
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
L C PKP W + +L E SR + L I ++ K D G Y+
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSAL-RENSRIAVLESG--------SLRIHNVQKEDAGQYR 169
Query: 78 CNAKNTLG 85
C AKN+LG
Sbjct: 170 CVAKNSLG 177
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYM 61
PS LI ++ P TL+C E P P W ++ G + + R H S F++
Sbjct: 16 PSDLIVSK-GEPATLNCKAEGRPTPTIEW-YKGGERVETDKDDPRSHRMLLPSGSL-FFL 72
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
R+ G S+ D G Y C A+N LG
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
+ R + TL C V +PKPI W + +I +G +Y + K Y +L I S+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG----YHQLIIASV 69
Query: 69 SKSDFGTYKCNAKNTLGGSEG 89
+ D Y+ A N G G
Sbjct: 70 TDDDATVYQVRATNQGGSVSG 90
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
+ R + TL C V +PKPI W + +I +G +Y + K Y +L I S+
Sbjct: 12 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG----YHQLIIASV 67
Query: 69 SKSDFGTYKCNAKNTLGGSEG 89
+ D Y+ A N G G
Sbjct: 68 TDDDATVYQVRATNQGGSVSG 88
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169
Of Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
+ R + TL C V +PKPI W + +I +G +Y + K Y +L I S+
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG----YHQLIIASV 69
Query: 69 SKSDFGTYKCNAKNTLGGSEG 89
+ D Y+ A N G G
Sbjct: 70 TDDDATVYQVRATNQGGSVSG 90
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH---EGSRYHMWTEKFSSYKFYM 61
PS LI ++ P TL+C E P P W ++ G + + R H S F++
Sbjct: 16 PSDLIVSK-GEPATLNCKAEGRPTPTIEW-YKGGERVETDKDDPRSHRMLLPSGSL-FFL 72
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
R+ G S+ D G Y C A+N LG
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLG 96
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
A L+ +TL C + +P+P WT + + E + EK+S L I + K
Sbjct: 25 ANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNE-----EKYSFNYDGSELIIKKVDK 79
Query: 71 SDFGTYKCNAKNTLGGSEGVI 91
SD Y C A+N G + I
Sbjct: 80 SDEAEYICIAENKAGEQDATI 100
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P + + A + P+TL C V+ P+ W E+ L + + +S L
Sbjct: 11 PLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS------LV 64
Query: 65 IGSLSKSDFGTYKCNAKNTLGG 86
I + SD G Y C A+N++G
Sbjct: 65 INKVDHSDVGEYTCKAENSVGA 86
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
A + L+C ++ P W H++ + G +Y + +E F ++I ++ +D G
Sbjct: 400 ADVHLECELQGTPPFQVSW-HKDKRELRSGKKYKIMSENF-----LTSIHILNVDSADIG 453
Query: 75 TYKCNAKNTLGGSEGV 90
Y+C A N +G V
Sbjct: 454 EYQCKASNDVGSDTCV 469
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 20 DCHVESYPKPITFWTHENGSLIHEGSRYHM-WTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
+C + P+ W +++ + I E S++ M + E + + Y +LS D G Y C
Sbjct: 312 ECKIGGSPEIKVLW-YKDETEIQESSKFRMSFVESVAVLEMY------NLSVEDSGDYTC 364
Query: 79 NAKN 82
A N
Sbjct: 365 EAHN 368
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 18 TLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
T CHV + P IT W +N I G Y M + ++ L + ++K D G Y
Sbjct: 216 TFKCHVTGTAPIKIT-WAKDNRE-IRPGGNYKMTLVENTA-----TLTVLKVTKGDAGQY 268
Query: 77 KCNAKNTLG 85
C A N G
Sbjct: 269 TCYASNVAG 277
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSL 68
A L +TL C + +P+P WT + + + E H++++ S L I ++
Sbjct: 208 ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS------ELTIRNV 261
Query: 69 SKSDFGTYKCNAKNTLGGSEGVI 91
K+D Y C A+N G + I
Sbjct: 262 DKNDEAEYVCIAENKAGEQDASI 284
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 21 CHVESYPKPITFWTHENGSLI-HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79
C V S P W H+ +I + R+ + + + L I + K+D GTY+C
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--------LQIRGIKKTDEGTYRCE 173
Query: 80 AK 81
+
Sbjct: 174 GR 175
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+T C P+P W NG LI E +Y + K S+ + +R I S D G Y
Sbjct: 212 MTFSCRASGSPEPAISW-FRNGKLIEENEKYIL---KGSNTELTVRNIINS----DGGPY 263
Query: 77 KCNAKNTLGGSE 88
C A N G E
Sbjct: 264 VCRATNKAGEDE 275
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+T C P+P W NG LI E +Y + K S+ + +R I S D G Y
Sbjct: 116 MTFSCRASGSPEPAISW-FRNGKLIEENEKYIL---KGSNTELTVRNIINS----DGGPY 167
Query: 77 KCNAKNTLGGSE 88
C A N G E
Sbjct: 168 VCRATNKAGEDE 179
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+I P+ L+ + P TL+C VE P+P W + + + H K + FY
Sbjct: 12 IIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFY 70
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
+ + D G Y C AKN +G
Sbjct: 71 RTMQ--GKKEQDGGEYWCVAKNRVG 93
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+I P+ L+ + P TL+C VE P+P W + + + H K + FY
Sbjct: 12 IIEHPTDLV-VKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFY 70
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
+ + D G Y C AKN +G
Sbjct: 71 RTMQ--GKKEQDGGEYWCVAKNRVG 93
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
A +T C P+P W NG LI E +Y + K S+ + +R I
Sbjct: 16 AERGEEMTFSCRASGSPEPAISW-FRNGKLIEENEKYIL---KGSNTELTVRNII----N 67
Query: 71 SDFGTYKCNAKNTLGGSE 88
SD G Y C A N G E
Sbjct: 68 SDGGPYVCRATNKAGEDE 85
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 17 LTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C E P P W +G EG + + L+I + SD G
Sbjct: 112 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 171
Query: 76 YKCNAKNTLGG 86
Y C A + +GG
Sbjct: 172 YDCEAASRIGG 182
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
A + L+C ++ P P H++ + G +Y + +E F ++I ++ +D G
Sbjct: 208 ADVHLECELQGTP-PFQVSWHKDKRELRSGKKYKIMSENF-----LTSIHILNVDSADIG 261
Query: 75 TYKCNAKNTLG 85
Y+C A N +G
Sbjct: 262 EYQCKASNDVG 272
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 20 DCHVESYPKPITFWTHENGSLIHEGSRYHM-WTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
+C + P+ W +++ + I E S++ M + E + + Y +LS D G Y C
Sbjct: 120 ECKIGGSPEIKVLW-YKDETEIQESSKFRMSFVESVAVLEMY------NLSVEDSGDYTC 172
Query: 79 NAKN 82
A N
Sbjct: 173 EAHN 176
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 18 TLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
T CHV + P IT W +N I G Y M + ++ L + ++K D G Y
Sbjct: 24 TFKCHVTGTAPIKIT-WAKDNRE-IRPGGNYKMTLVENTA-----TLTVLKVTKGDAGQY 76
Query: 77 KCNAKNTLG 85
C A N G
Sbjct: 77 TCYASNVAG 85
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
A + L+C ++ P P H++ + G +Y + +E F ++I ++ +D G
Sbjct: 208 ADVHLECELQGTP-PFQVSWHKDKRELRSGKKYKIMSENF-----LTSIHILNVDSADIG 261
Query: 75 TYKCNAKNTLG 85
Y+C A N +G
Sbjct: 262 EYQCKASNDVG 272
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 20 DCHVESYPKPITFWTHENGSLIHEGSRYHM-WTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
+C + P+ W +++ + I E S++ M + E + + Y +LS D G Y C
Sbjct: 120 ECKIGGSPEIKVLW-YKDETEIQESSKFRMSFVESVAVLEMY------NLSVEDSGDYTC 172
Query: 79 NAKN 82
A N
Sbjct: 173 EAHN 176
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 18 TLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
T CHV + P IT W +N I G Y M + ++ L + ++K D G Y
Sbjct: 24 TFKCHVTGTAPIKIT-WAKDNRE-IRPGGNYKMTLVENTA-----TLTVLKVTKGDAGQY 76
Query: 77 KCNAKNTLG 85
C A N G
Sbjct: 77 TCYASNVAG 85
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 27 PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85
P+P WT ++G I +G +Y + +K F++ ++ SD G Y C KN+ G
Sbjct: 34 PRPTAIWT-KDGKAITQGGKYKLSEDKGG---FFLEIH--KTDTSDSGLYTCTVKNSAG 86
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
L L+C P P W + G L + +++ F L I ++S+ D G Y
Sbjct: 240 LLLECIASGVPTPDIAWYKKGGDLPSDKAKFE---------NFNKALRITNVSEEDSGEY 290
Query: 77 KCNAKNTLGGSEGVIKV 93
C A N +G I V
Sbjct: 291 FCLASNKMGSIRHTISV 307
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
+ + A + L+C P P W +G I +R H K L I
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH---------KSNGILEIP 263
Query: 67 SLSKSDFGTYKCNAKNTLG 85
+ + D G+Y+C A+N+ G
Sbjct: 264 NFQQEDAGSYECVAENSRG 282
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 42 HEGSRYHMWT-EKFSSYKFYMR--------LYIGSLSKSDFGTYKCNAKNTL 84
H G + W ++ SY+ R LYI + KSD G Y C NT+
Sbjct: 129 HSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 180
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
+ + A + L+C P P W +G I +R H K L I
Sbjct: 212 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH---------KSNGILEIP 262
Query: 67 SLSKSDFGTYKCNAKNTLG 85
+ + D G+Y+C A+N+ G
Sbjct: 263 NFQQEDAGSYECVAENSRG 281
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 42 HEGSRYHMWT-EKFSSYKFYMR--------LYIGSLSKSDFGTYKCNAKNTL 84
H G + W ++ SY+ R LYI + KSD G Y C NT+
Sbjct: 128 HSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV 179
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 33.1 bits (74), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+TL+C P P W +GSL + WT + L I S+S D GTY
Sbjct: 224 VTLECFAFGNPVPRIKWRKVDGSLSPQ------WTTAEPT------LQIPSVSFEDEGTY 271
Query: 77 KCNAKNTLG 85
+C A+N+ G
Sbjct: 272 ECEAENSKG 280
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 32.7 bits (73), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+ L+C + + P P FW N + R ++ + + L I ++K D G Y
Sbjct: 33 VKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGR----VTLLIKDVNKKDAGWY 88
Query: 77 KCNAKNTLG 85
+A N G
Sbjct: 89 TVSAVNEAG 97
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
DC VE YP P W ++ + E + + ++ + L I + D Y C
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNP-VKESRHFQIDYDEEGN----CSLTISEVCGDDDAKYTC 115
Query: 79 NAKNTLG 85
A N+LG
Sbjct: 116 KAVNSLG 122
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
DC VE YP P W ++ + E + + ++ + L I + D Y C
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNP-VKESRHFQIDYDEEGN----CSLTISEVCGDDDAKYTC 115
Query: 79 NAKNTLG 85
A N+LG
Sbjct: 116 KAVNSLG 122
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+ + C V+S P W + L + + K S M L I S +DFG
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTT----NLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 76 YKCNAKNTLG 85
Y C A N +G
Sbjct: 173 YNCTATNHIG 182
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 17 LTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C E P P W +G EG + + L+I + SD G
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 76 YKCNAKNTLGGSE 88
Y C A + +GG +
Sbjct: 78 YDCEAASRIGGHQ 90
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+ + C V+S P W + L + + K S M L I S +DFG
Sbjct: 117 PINISCDVKSNPPASIHWRRDKLVLPAKNTT----NLKTYSTGRKMILEIAPTSDNDFGR 172
Query: 76 YKCNAKNTLG 85
Y C A N +G
Sbjct: 173 YNCTATNHIG 182
Score = 29.6 bits (65), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 17 LTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C E P P W +G EG + + L+I + SD G
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 76 YKCNAKNTLGGSE 88
Y C A + +GG +
Sbjct: 78 YDCEAASRIGGHQ 90
>pdb|2I24|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain
pdb|2I25|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
pdb|2I25|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Pbla8 Variable Domain In Complex With Lysozyme
Length = 121
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 7 QLIGARLAAPLTLDCHVES----------YPKPITFWTHENGSLIHEGSRYHMWTEKFSS 56
Q I LT++C V Y KP E+ I +G RY + T S
Sbjct: 8 QRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEES---ISDGGRY-VETVNRGS 63
Query: 57 YKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFG 100
F +R I L+ D GTY+C ++ G + V N Y G
Sbjct: 64 KSFSLR--INDLTVKDSGTYRCKPESRYGSYDAVCAALNDQYGG 105
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
Q I LA+ +L C +SYP P W I +R + L I
Sbjct: 223 QFIDVELASSYSLLCMAQSYPTPSFRWYK----FIEGTTRKQAVVLNDRVKQVSGTLIIK 278
Query: 67 SLSKSDFGTYKCNAKNTLGG 86
D G Y C N++GG
Sbjct: 279 DAVVEDSGKYLCVVNNSVGG 298
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
L C P P W +G I RY + + L I S+ +D G YKC
Sbjct: 449 LKCVAGGNPTPEISW-ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKC 507
Query: 79 NAKNTLGGSE--GVIKVYNIGYF 99
AK+ +G +E + VY + Y
Sbjct: 508 IAKSKVGVAEHSAKLNVYGLPYI 530
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
++C + +PKP W G E Y + + L++ ++ K++ G Y C
Sbjct: 734 VECKADGFPKPQVTWKKAVGDTPGE---YKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLC 790
Query: 79 NAKNTLG-GSEGVIKV 93
A N +G G VI +
Sbjct: 791 EAINGIGSGLSAVIMI 806
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ + C V +YP W +G L+ S ++ +SY L + S++DFG
Sbjct: 36 VNITCEVFAYPSATISW-FRDGQLLPSSNYSNIKIYNTPSASY-----LEVTPDSENDFG 89
Query: 75 TYKCNAKNTLG 85
Y C A N +G
Sbjct: 90 NYNCTAVNRIG 100
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 11 ARLAAPLTLDCHVESYPKPITFW---THENGSLI-HEGSRYHMWTEKF--SSYKFYMRLY 64
A L + + C V S +P W NGS + +G+ Y + + S + +RL
Sbjct: 126 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLR 185
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEE 110
+ ++S+ D G Y C A N +G +E + G ++ + V +E
Sbjct: 186 LANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVEADE 231
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 19 LDCHVESYPKPITFW-----THENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLS-KSD 72
L C ES P P+T W T + GS + SS + L+I +L+ ++D
Sbjct: 103 LVCKSESVP-PVTDWAWYKITDSEDKALMNGSESRFF---VSSSQGRSELHIENLNMEAD 158
Query: 73 FGTYKCNAKNTLGGSEGVIKV 93
G Y+CN ++ G + +I +
Sbjct: 159 PGQYRCNGTSSKGSDQAIITL 179
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P ++I + +T+ C V P P W+H L G R + L
Sbjct: 315 PEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL--SGGRATVTDSG---------LV 363
Query: 65 IGSLSKSDFGTYKCNAKNTLG 85
I + D G Y C A N G
Sbjct: 364 IKGVKNGDKGYYGCRATNEHG 384
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 12 RLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
R T+ C ++ + + W EN S +Y+ W +Y+ L I S
Sbjct: 224 REGEEFTVTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSARV 282
Query: 71 SDFGTYKCNAKNTLGGSE--GVIKVYNIGYFG-----SDTQYVTDEE 110
+D G + C A NT G + ++V + G+ + T +V D E
Sbjct: 283 NDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPI--TFWTHE-----NGSLIHEGSRYHMWTEKFSSYKF 59
Q I LT++C + + T+W + N I +G RY + T S F
Sbjct: 8 QTITKETGESLTINCVLRDSNCALSSTYWYRKKSGSTNEESISKGGRY-VETVNSGSKSF 66
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFG 100
+R I L+ D GTY+C ++ G + N Y G
Sbjct: 67 SLR--INDLTVEDSGTYRCKPESRYGSYDAECAALNDQYGG 105
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 12 RLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
R T+ C ++ + + W EN S +Y+ W +Y+ L I S
Sbjct: 199 REGEEFTVTCTIKDVSSSVYSTWKREN-SQTKLQEKYNSWHHGDFNYERQATLTISSARV 257
Query: 71 SDFGTYKCNAKNTLGGSE--GVIKVYNIGYFG-----SDTQYVTDEE 110
+D G + C A NT G + ++V + G+ + T +V D E
Sbjct: 258 NDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 304
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 31 TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
FW +NG L E +Y + K L I +LS+ D G Y+C
Sbjct: 564 VFWKFQNGVLKAESPKYGLMGRK--------NLLIFNLSEGDSGVYQC 603
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 17 LTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C ++ P + WT NGSL K + + G ++ S GT
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQNRTLFFKGPINYSLAGT 283
Query: 76 YKCNAKNTLGGSEGVIKVYNIGYF 99
Y C A N +G G ++V NI F
Sbjct: 284 YICEATNPIGTRSGQVEV-NITEF 306
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 17 LTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C ++ P + WT NGSL K + + G ++ S GT
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQNRTLFFKGPINYSLAGT 283
Query: 76 YKCNAKNTLGGSEGVIKVYNIGYF 99
Y C A N +G G ++V NI F
Sbjct: 284 YICEATNPIGTRSGQVEV-NITEF 306
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 21 CHVESYPKPITFWTHENGSLI-HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79
C V S P W H+ +I + R+ + + + L I + K+D GTY+C
Sbjct: 122 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--------LQIRGIKKTDEGTYRCE 173
Query: 80 AK 81
+
Sbjct: 174 GR 175
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
+D V P P W + NG + + M S K L + SD G Y C
Sbjct: 25 MDFKVSGLPAPDVSW-YLNGRTVQSDDLHKMIV----SEKGLHSLIFEVVRASDAGAYAC 79
Query: 79 NAKNTLG 85
AKN G
Sbjct: 80 VAKNRAG 86
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 21 CHVESYPKPITFWTHENGSLI-HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79
C V S P W H+ +I + R+ + + + L I + K+D GTY+C
Sbjct: 23 CDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY--------LQIRGIKKTDEGTYRCE 74
Query: 80 AK 81
+
Sbjct: 75 GR 76
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 17 LTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C ++ P + WT NGSL K + + G ++ S GT
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQNRTLFFKGPINYSLAGT 298
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N +G G ++V
Sbjct: 299 YICEATNPIGTRSGQVEV 316
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSL--IHEGSRYHMWTEKFSSYKFYMRLYIG 66
I A + + L C V P P W L I SR + L I
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG--------ALQIS 182
Query: 67 SLSKSDFGTYKCNAKN---TLGGSEGVIKVYN 95
L D G Y+C+A+N T G+E +++ +
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILS 214
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+ +C V P P W +NG ++ + + L I + KSD G Y
Sbjct: 330 IEFECAVSGKPVPTVNWM-KNGDVVIPSDYFQIVGGS--------NLRILGVVKSDEGFY 380
Query: 77 KCNAKNTLGGSE 88
+C A+N G ++
Sbjct: 381 QCVAENEAGNAQ 392
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 17 LTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C ++ P + WT NGSL K + + G ++ S GT
Sbjct: 236 VKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQNRTLFFKGPINYSLAGT 284
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N +G G ++V
Sbjct: 285 YICEATNPIGTRSGQVEV 302
>pdb|1W99|A Chain A, Mosquito-Larvicidal Toxin Cry4ba From Bacillus
Thuringiensis Ssp. Israelensis
Length = 558
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTH 35
++ PS A L A LT D H+ ++ K + FWT+
Sbjct: 212 LVESPSSKSIAALEAALTRDVHLFTWLKRVDFWTN 246
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDF 73
P+ L C + P W + G + T + ++ + S+++ D
Sbjct: 21 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT 80
Query: 74 GTYKCNAKNTLGGSEGVIKV 93
GTY C G S G +KV
Sbjct: 81 GTYTCMVSEEGGNSYGEVKV 100
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like
Domain Of Nectin-1
Length = 95
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 17 LTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C ++ P + WT NGSL K + + G ++ S GT
Sbjct: 25 VKLTCKADANPPATEYHWTTLNGSL-----------PKGVEAQNRTLFFRGPITYSLAGT 73
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N +G G ++V
Sbjct: 74 YICEATNPIGTRSGQVEV 91
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+TL+C P P W +GS+ W SS L+I ++ D GTY
Sbjct: 225 VTLECFAFGNPVPQIKWRK------LDGSQTSKW---LSSEPL---LHIQNVDFEDEGTY 272
Query: 77 KCNAKNTLG 85
+C A+N G
Sbjct: 273 ECEAENIKG 281
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 17/70 (24%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
L+L CH S P W LI + H L+I ++++ + G Y
Sbjct: 399 LSLSCHAASNPPAQYSW------LIDGNIQQHT-----------QELFISNITEKNSGLY 441
Query: 77 KCNAKNTLGG 86
C A N+ G
Sbjct: 442 TCQANNSASG 451
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its
Receptor Junctional Adhesion Molecule-A
Length = 104
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDF 73
P+ L C + P W + G + T + ++ + S+++ D
Sbjct: 20 PVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT 79
Query: 74 GTYKCNAKNTLGGSEGVIKV 93
GTY C G S G +KV
Sbjct: 80 GTYTCMVSEEGGNSYGEVKV 99
>pdb|1WIT|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, Minimized Average Structure
pdb|1WIU|A Chain A, Twitchin Immunoglobulin Superfamily Domain (Igsf Module)
(Ig 18'), Nmr, 30 Structures
Length = 93
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
++ S ++D G YK KN LG E + +V
Sbjct: 60 IFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 9/63 (14%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKW 122
L IGSL+ D T + NTLGGS Y Y TDE + R + S +
Sbjct: 6 LVIGSLAFDDIETPFGRSDNTLGGSS--------TYIALSASYFTDEPI-RXVGVVGSDF 56
Query: 123 GSE 125
G E
Sbjct: 57 GKE 59
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 21 CHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF-------YMRLYIGSLS-KSD 72
C YP P W + + E S SS +F Y L I +L D
Sbjct: 114 CKSVGYPHPEWMWRKKENGVFEEISN--------SSGRFFIINKENYTELNIVNLQITED 165
Query: 73 FGTYKCNAKNTLGGS 87
G Y+CNA N++G +
Sbjct: 166 PGEYECNATNSIGSA 180
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTLG 85
LY+ ++K D GTY+C N G
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYG 82
>pdb|3NCJ|L Chain L, Crystal Structure Of Fab15 Mut8
Length = 214
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTL 84
L I SL DF TY C NTL
Sbjct: 73 LTISSLQPEDFATYYCQQGNTL 94
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1
pdb|3E6U|C Chain C, Crystal Structure Of Human Lancl1
pdb|3E6U|B Chain B, Crystal Structure Of Human Lancl1
pdb|3E6U|D Chain D, Crystal Structure Of Human Lancl1
pdb|3E73|A Chain A, Crystal Structure Of Human Lancl1 Complexed With Gsh
pdb|3E73|B Chain B, Crystal Structure Of Human Lancl1 Complexed With Gsh
Length = 411
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 97 GYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGP----IRLPDPS 152
GYF + + + + TN+I ER + A + G+GY +G + L D
Sbjct: 32 GYFDAAGRLTPEFSQRLTNKIRELLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVF 91
Query: 153 GDPVYL 158
GDP YL
Sbjct: 92 GDPAYL 97
>pdb|3NA9|L Chain L, Crystal Structure Of Fab15
pdb|3NAA|L Chain L, Crystal Structure Of Fab15 Mut5
pdb|3NAB|L Chain L, Crystal Structure Of Fab15 Mut6
pdb|3NAC|L Chain L, Crystal Structure Of Fab15 Mut7
pdb|3ULU|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|L Chain L, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 214
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTL 84
L I SL DF TY C NTL
Sbjct: 73 LTISSLQPEDFATYYCQQGNTL 94
>pdb|2FGW|L Chain L, X-Ray Structures Of Fragments From Binding And
Nonbinding Versions Of A Humanized Anti-Cd18 Antibody:
Structural Indications Of The Key Role Of Vh Residues
59 To 65
Length = 214
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTL 84
L I SL DF TY C NTL
Sbjct: 73 LTISSLQPEDFATYYCQQGNTL 94
>pdb|1FGV|L Chain L, X-Ray Structures Of Fragments From Binding And
Nonbinding Versions Of A Humanized Anti-Cd18 Antibody:
Structural Indications Of The Key Role Of Vh Residues
59 To 65
Length = 109
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTL 84
L I SL DF TY C NTL
Sbjct: 73 LTISSLQPEDFATYYCQQGNTL 94
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 76 YKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKW 135
YKC A N +G E VI + + +MQ T Q + S W + + W
Sbjct: 528 YKCEAVNKVGRGERVISF----HVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTW 583
Query: 136 GSGYRYTSGPIRLPDPSGD 154
Y GP LP G+
Sbjct: 584 -----YKLGPQPLPIHVGE 597
>pdb|1SQ2|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lyxozyme
pdb|1T6V|N Chain N, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lysozyme
pdb|1T6V|O Chain O, Crystal Structure Analysis Of The Nurse Shark New
Antigen Receptor (nar) Variable Domain In Complex With
Lysozyme
Length = 113
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 16 PLTLDCHVE--SYPKPITFWTHE-----NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
LT++C + SY T W + N I +G RY + T S F +R I L
Sbjct: 17 SLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRY-VETVNSGSKSFSLR--INDL 73
Query: 69 SKSDFGTYKC 78
+ D GTY+C
Sbjct: 74 TVEDGGTYRC 83
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 23 VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82
V+ PKP W + NG++++E + +++ L + + + + G Y AKN
Sbjct: 25 VKGNPKPALQWFY-NGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKN 83
Query: 83 TLGGSEGVIKVYNIGYFGSD 102
G E I + +G+ G D
Sbjct: 84 EYGKDEKQISAHFMGWPGID 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,266,813
Number of Sequences: 62578
Number of extensions: 219437
Number of successful extensions: 792
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 114
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)