Query psy16261
Match_columns 158
No_of_seqs 168 out of 1810
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 16:54:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05762 Ig8_MLCK Eighth immuno 99.8 2.3E-19 4.9E-24 111.5 13.1 95 2-102 3-97 (98)
2 cd05737 Ig_Myomesin_like_C C-t 99.8 9.4E-18 2E-22 103.1 11.7 89 2-95 4-92 (92)
3 cd05852 Ig5_Contactin-1 Fifth 99.8 6E-18 1.3E-22 99.5 9.0 73 14-95 1-73 (73)
4 cd05851 Ig3_Contactin-1 Third 99.8 1.2E-17 2.6E-22 101.7 10.6 85 2-96 4-88 (88)
5 cd05735 Ig8_DSCAM Eight immuno 99.8 3.6E-17 7.9E-22 99.6 12.4 86 14-101 1-87 (88)
6 cd05745 Ig3_Peroxidasin Third 99.8 6.1E-18 1.3E-22 99.8 8.5 74 13-95 1-74 (74)
7 cd05894 Ig_C5_MyBP-C C5 immuno 99.8 5.2E-17 1.1E-21 98.5 12.1 82 8-95 4-86 (86)
8 cd04975 Ig4_SCFR_like Fourth i 99.7 7.5E-17 1.6E-21 100.5 12.6 90 6-96 10-100 (101)
9 cd04972 Ig_TrkABC_d4 Fourth do 99.7 7.8E-17 1.7E-21 98.6 12.1 88 2-95 3-90 (90)
10 cd05747 Ig5_Titin_like M5, fif 99.7 1.4E-16 3E-21 97.8 12.2 85 3-93 7-91 (92)
11 cd05723 Ig4_Neogenin Fourth im 99.7 8.4E-17 1.8E-21 94.1 9.8 71 16-95 1-71 (71)
12 cd04968 Ig3_Contactin_like Thi 99.7 2.9E-16 6.4E-21 95.6 12.2 84 2-95 4-87 (88)
13 cd05728 Ig4_Contactin-2-like F 99.7 9.8E-17 2.1E-21 97.1 9.9 82 4-95 4-85 (85)
14 cd04969 Ig5_Contactin_like Fif 99.7 7.1E-17 1.5E-21 94.9 9.0 73 14-95 1-73 (73)
15 cd05892 Ig_Myotilin_C C-termin 99.7 1.1E-16 2.5E-21 94.4 9.8 74 17-95 1-75 (75)
16 cd05865 Ig1_NCAM-1 First immun 99.7 3.2E-16 6.8E-21 96.9 11.9 89 3-95 4-95 (96)
17 cd05891 Ig_M-protein_C C-termi 99.7 2.6E-16 5.6E-21 96.6 11.0 88 3-95 5-92 (92)
18 PF07679 I-set: Immunoglobulin 99.7 4.8E-16 1E-20 94.8 11.9 88 2-95 3-90 (90)
19 cd05866 Ig1_NCAM-2 First immun 99.7 4.9E-16 1.1E-20 95.2 11.8 88 2-95 3-91 (92)
20 cd05748 Ig_Titin_like Immunogl 99.7 3.9E-16 8.4E-21 92.0 10.8 74 16-95 1-74 (74)
21 cd05859 Ig4_PDGFR-alpha Fourth 99.7 6.7E-16 1.4E-20 96.3 11.7 88 8-96 12-100 (101)
22 cd05893 Ig_Palladin_C C-termin 99.7 2E-16 4.4E-21 93.4 8.9 74 17-95 1-75 (75)
23 cd05867 Ig4_L1-CAM_like Fourth 99.7 4.6E-16 9.9E-21 92.2 10.1 72 14-95 1-75 (76)
24 cd05869 Ig5_NCAM-1 Fifth immun 99.7 1E-15 2.2E-20 94.9 12.0 88 2-95 5-97 (97)
25 cd05730 Ig3_NCAM-1_like Third 99.7 7.9E-16 1.7E-20 95.0 11.5 82 8-97 12-94 (95)
26 cd05744 Ig_Myotilin_C_like Imm 99.7 6.2E-16 1.3E-20 91.4 9.9 74 17-95 1-75 (75)
27 cd05764 Ig_2 Subgroup of the i 99.7 5.4E-16 1.2E-20 91.4 9.5 74 14-95 1-74 (74)
28 cd05746 Ig4_Peroxidasin Fourth 99.7 2.6E-16 5.6E-21 91.5 7.9 68 17-93 1-68 (69)
29 cd05868 Ig4_NrCAM Fourth immun 99.7 8.4E-16 1.8E-20 91.1 10.1 73 14-95 1-75 (76)
30 cd05857 Ig2_FGFR Second immuno 99.7 1.6E-15 3.5E-20 91.6 10.6 82 9-95 4-85 (85)
31 cd05855 Ig_TrkB_d5 Fifth domai 99.7 1.8E-15 4E-20 89.8 10.3 76 18-94 2-77 (79)
32 cd05870 Ig5_NCAM-2 Fifth immun 99.7 2.7E-15 5.9E-20 93.1 11.1 85 6-95 8-98 (98)
33 cd05773 Ig8_hNephrin_like Eigh 99.7 5.4E-15 1.2E-19 93.5 12.5 85 13-99 22-108 (109)
34 cd05726 Ig4_Robo Fhird immunog 99.7 1.5E-15 3.3E-20 92.8 9.6 78 14-99 1-85 (90)
35 cd05743 Ig_Perlecan_D2_like Im 99.7 1.9E-15 4E-20 90.0 9.7 75 14-94 1-75 (78)
36 cd05876 Ig3_L1-CAM Third immun 99.7 1E-15 2.2E-20 89.5 8.3 70 17-95 1-70 (71)
37 cd04978 Ig4_L1-NrCAM_like Four 99.7 1.6E-15 3.4E-20 89.7 9.1 73 14-95 1-75 (76)
38 cd05854 Ig6_Contactin-2 Sixth 99.7 4.6E-15 9.9E-20 89.7 11.1 80 15-99 1-85 (85)
39 cd04977 Ig1_NCAM-1_like First 99.6 8E-15 1.7E-19 90.0 11.8 88 2-94 3-91 (92)
40 cd05732 Ig5_NCAM-1_like Fifth 99.6 4.9E-15 1.1E-19 91.5 10.9 83 7-95 9-96 (96)
41 KOG3513|consensus 99.6 2.2E-15 4.7E-20 122.9 11.9 131 5-152 337-517 (1051)
42 cd04976 Ig2_VEGFR Second immun 99.6 1.9E-15 4.1E-20 88.4 8.6 70 17-96 1-70 (71)
43 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 5.1E-15 1.1E-19 88.6 10.5 76 18-94 2-79 (81)
44 cd05724 Ig2_Robo Second immuno 99.6 3.3E-15 7.1E-20 90.4 9.8 80 5-93 2-84 (86)
45 cd05856 Ig2_FGFRL1-like Second 99.6 2.6E-15 5.7E-20 89.9 9.2 80 8-95 3-82 (82)
46 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.4E-15 5.3E-20 86.7 8.5 66 17-96 1-66 (67)
47 cd04973 Ig1_FGFR First immunog 99.6 4.3E-15 9.3E-20 88.6 9.5 78 7-95 2-79 (79)
48 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 5.5E-15 1.2E-19 85.9 9.1 68 14-93 1-68 (69)
49 cd05725 Ig3_Robo Third immunog 99.6 3.6E-15 7.9E-20 86.6 8.4 69 17-95 1-69 (69)
50 cd05758 Ig5_KIRREL3-like Fifth 99.6 2.2E-14 4.8E-19 89.0 12.5 86 6-93 8-97 (98)
51 cd05864 Ig2_VEGFR-2 Second imm 99.6 4.2E-15 9.1E-20 86.5 8.5 68 17-95 1-68 (70)
52 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 5.9E-15 1.3E-19 86.9 8.7 70 17-95 1-73 (74)
53 cd05740 Ig_CEACAM_D4 Fourth im 99.6 9.5E-15 2.1E-19 89.4 9.7 79 7-95 11-90 (91)
54 cd05853 Ig6_Contactin-4 Sixth 99.6 8.2E-15 1.8E-19 88.3 8.7 80 15-99 1-85 (85)
55 cd04970 Ig6_Contactin_like Six 99.6 1.1E-14 2.4E-19 88.0 9.4 80 15-99 1-85 (85)
56 cd05760 Ig2_PTK7 Second immuno 99.6 1.1E-14 2.4E-19 86.5 9.0 72 17-96 1-75 (77)
57 cd05731 Ig3_L1-CAM_like Third 99.6 7.6E-15 1.7E-19 85.6 8.0 70 17-95 1-70 (71)
58 cd07693 Ig1_Robo First immunog 99.6 1.8E-14 4E-19 89.2 10.0 90 2-95 4-99 (100)
59 cd05858 Ig3_FGFR-2 Third immun 99.6 1.9E-14 4.1E-19 87.9 9.8 82 14-95 1-89 (90)
60 cd05763 Ig_1 Subgroup of the i 99.6 9.6E-15 2.1E-19 86.2 8.2 72 17-95 1-74 (75)
61 cd05848 Ig1_Contactin-5 First 99.6 3E-14 6.5E-19 87.7 10.5 77 4-89 6-87 (94)
62 cd05722 Ig1_Neogenin First imm 99.6 2.5E-14 5.5E-19 88.2 10.1 83 3-94 3-94 (95)
63 cd05849 Ig1_Contactin-1 First 99.6 5.1E-14 1.1E-18 86.5 10.4 79 5-93 7-91 (93)
64 cd04974 Ig3_FGFR Third immunog 99.6 3.7E-14 7.9E-19 86.7 9.5 82 14-95 1-89 (90)
65 cd05850 Ig1_Contactin-2 First 99.6 1E-13 2.3E-18 85.3 11.3 81 3-93 5-92 (94)
66 cd05736 Ig2_Follistatin_like S 99.6 7.3E-14 1.6E-18 82.6 9.5 72 17-96 1-74 (76)
67 cd05765 Ig_3 Subgroup of the i 99.5 6.4E-14 1.4E-18 83.7 9.0 74 14-95 1-81 (81)
68 cd05734 Ig7_DSCAM Seventh immu 99.5 7.1E-14 1.5E-18 83.3 8.5 70 17-94 1-78 (79)
69 cd05749 Ig2_Tyro3_like Second 99.5 7.2E-14 1.6E-18 83.6 8.3 73 3-89 2-75 (81)
70 cd07702 Ig2_VEGFR-1 Second imm 99.5 9.3E-14 2E-18 81.1 8.5 67 17-93 1-68 (72)
71 cd05898 Ig5_KIRREL3 Fifth immu 99.5 5.2E-13 1.1E-17 82.4 12.2 88 4-93 6-97 (98)
72 cd05742 Ig1_VEGFR_like First i 99.5 2E-13 4.4E-18 82.3 10.2 81 14-95 1-83 (84)
73 KOG3513|consensus 99.5 9.3E-14 2E-18 113.6 10.8 130 6-151 248-423 (1051)
74 cd05756 Ig1_IL1R_like First im 99.5 1.6E-13 3.4E-18 84.5 8.4 79 7-95 7-94 (94)
75 cd05750 Ig_Pro_neuregulin Immu 99.5 1.7E-13 3.7E-18 80.7 8.3 70 17-92 1-74 (75)
76 cd05729 Ig2_FGFR_like Second i 99.5 8.2E-13 1.8E-17 79.4 10.7 83 8-95 3-85 (85)
77 cd05882 Ig1_Necl-1 First (N-te 99.5 1.3E-12 2.8E-17 80.5 11.2 83 6-93 4-93 (95)
78 cd04979 Ig_Semaphorin_C Immuno 99.5 9.2E-13 2E-17 80.2 9.6 82 5-97 2-88 (89)
79 cd05733 Ig6_L1-CAM_like Sixth 99.5 2.8E-13 6E-18 80.4 7.0 65 17-89 1-71 (77)
80 cd05875 Ig6_hNeurofascin_like 99.5 8.9E-13 1.9E-17 78.2 8.9 65 17-89 1-71 (77)
81 cd05873 Ig_Sema4D_like Immunog 99.5 1.7E-12 3.6E-17 78.5 9.8 69 5-84 2-71 (87)
82 cd07701 Ig1_Necl-3 First (N-te 99.4 2.5E-12 5.5E-17 79.3 10.6 85 5-94 3-94 (95)
83 cd05752 Ig1_FcgammaR_like Frst 99.4 8.9E-13 1.9E-17 78.3 8.1 66 1-83 2-68 (78)
84 cd05874 Ig6_NrCAM Sixth immuno 99.4 7.6E-13 1.6E-17 78.5 7.8 65 17-89 1-71 (77)
85 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 8.2E-12 1.8E-16 75.2 12.1 79 14-96 1-83 (84)
86 cd05754 Ig3_Perlecan_like Thir 99.4 1.3E-12 2.7E-17 78.9 8.4 78 4-93 6-84 (85)
87 cd04967 Ig1_Contactin First Ig 99.4 2.5E-12 5.5E-17 78.6 9.8 65 14-88 19-86 (91)
88 cd05895 Ig_Pro_neuregulin-1 Im 99.4 3.5E-12 7.6E-17 75.4 8.8 70 17-92 1-75 (76)
89 cd05845 Ig2_L1-CAM_like Second 99.4 1.2E-12 2.7E-17 80.1 6.6 73 6-86 10-84 (95)
90 cd05757 Ig2_IL1R_like Second i 99.4 4.9E-12 1.1E-16 77.5 9.1 77 8-94 4-85 (92)
91 KOG4194|consensus 99.4 5.2E-12 1.1E-16 98.2 9.8 93 5-104 618-712 (873)
92 cd05717 Ig1_Necl-1-3_like Firs 99.3 5.3E-11 1.2E-15 73.3 11.2 83 7-94 5-94 (95)
93 cd05860 Ig4_SCFR Fourth immuno 99.3 1.5E-10 3.2E-15 71.4 12.4 90 6-96 10-100 (101)
94 cd05871 Ig_Semaphorin_classIII 99.3 8.5E-11 1.8E-15 71.8 10.0 80 7-96 4-89 (91)
95 cd05727 Ig2_Contactin-2-like S 99.3 1.7E-11 3.6E-16 75.3 6.5 72 7-87 11-86 (96)
96 cd05862 Ig1_VEGFR First immuno 99.3 8.7E-11 1.9E-15 71.1 9.3 80 14-96 1-85 (86)
97 KOG4221|consensus 99.3 7.5E-11 1.6E-15 97.4 11.5 89 5-102 243-332 (1381)
98 smart00410 IG_like Immunoglobu 99.3 4E-10 8.7E-15 66.8 11.9 84 7-95 2-85 (86)
99 smart00409 IG Immunoglobulin. 99.3 4E-10 8.7E-15 66.8 11.9 84 7-95 2-85 (86)
100 smart00408 IGc2 Immunoglobulin 99.2 6.1E-11 1.3E-15 66.5 7.5 63 13-85 1-63 (63)
101 cd05753 Ig2_FcgammaR_like Seco 99.2 7E-11 1.5E-15 71.0 6.7 66 8-87 8-74 (83)
102 cd07690 Ig1_CD4 First immunogl 99.1 3E-10 6.4E-15 69.7 7.6 77 9-87 2-91 (94)
103 KOG4222|consensus 99.1 2E-10 4.4E-15 94.4 7.7 133 4-152 136-316 (1281)
104 PHA02826 IL-1 receptor-like pr 99.1 8.9E-10 1.9E-14 78.2 10.1 68 9-84 139-211 (227)
105 cd05872 Ig_Sema4B_like Immunog 99.1 1.1E-09 2.4E-14 65.8 8.5 66 6-82 3-68 (85)
106 cd05759 Ig2_KIRREL3-like Secon 99.1 2.1E-09 4.6E-14 64.3 9.7 76 17-93 2-80 (82)
107 cd05881 Ig1_Necl-2 First (N-te 99.1 5.5E-09 1.2E-13 64.1 11.3 74 6-83 4-84 (95)
108 PHA02785 IL-beta-binding prote 99.1 1.8E-09 3.9E-14 80.7 10.0 77 10-97 37-118 (326)
109 KOG4221|consensus 99.1 1.7E-09 3.7E-14 89.6 10.3 131 7-153 148-330 (1381)
110 PHA02785 IL-beta-binding prote 99.1 5.2E-09 1.1E-13 78.2 12.1 81 6-87 227-318 (326)
111 PF13895 Ig_2: Immunoglobulin 99.0 1.6E-09 3.4E-14 64.0 7.6 71 9-95 9-80 (80)
112 PF00047 ig: Immunoglobulin do 99.0 3.9E-10 8.5E-15 64.1 4.7 63 14-80 1-64 (64)
113 cd05774 Ig_CEACAM_D1 First imm 99.0 3.9E-09 8.4E-14 66.1 8.4 84 3-94 2-104 (105)
114 cd05897 Ig2_IL1R2_like Second 99.0 5.5E-09 1.2E-13 64.1 8.1 70 10-87 6-81 (95)
115 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 9E-09 1.9E-13 63.7 8.3 77 8-94 9-103 (104)
116 PF13927 Ig_3: Immunoglobulin 98.9 4.3E-09 9.3E-14 61.2 6.6 71 2-82 4-75 (75)
117 PHA02826 IL-1 receptor-like pr 98.9 6.6E-09 1.4E-13 73.7 8.4 88 7-97 30-134 (227)
118 cd04983 IgV_TCR_alpha_like Imm 98.9 1.6E-08 3.6E-13 63.5 9.1 79 3-84 2-93 (109)
119 cd05714 Ig_CSPGs_LP Immunoglob 98.9 2.8E-08 6.1E-13 62.3 10.1 85 13-97 1-104 (106)
120 cd05899 IgV_TCR_beta Immunoglo 98.9 1.5E-08 3.2E-13 64.0 8.7 77 3-84 2-95 (110)
121 KOG4194|consensus 98.9 3.6E-09 7.7E-14 82.8 6.6 142 3-152 507-707 (873)
122 cd05885 Ig2_Necl-4 Second immu 98.9 2.7E-08 5.8E-13 59.1 8.0 67 17-87 2-69 (80)
123 cd05751 Ig1_LILRB1_like First 98.8 2.1E-08 4.6E-13 61.2 7.1 70 3-83 6-75 (91)
124 cd05877 Ig_LP_like Immunoglobu 98.8 6.7E-08 1.5E-12 60.5 9.4 81 13-97 1-104 (106)
125 cd05900 Ig_Aggrecan Immunoglob 98.8 7.6E-08 1.6E-12 61.0 9.5 83 13-97 1-110 (112)
126 cd05741 Ig_CEACAM_D1_like Firs 98.8 4.8E-08 1.1E-12 59.5 8.2 73 14-94 1-91 (92)
127 cd05713 Ig_MOG_like Immunoglob 98.8 1.2E-07 2.7E-12 58.7 9.5 80 14-95 1-99 (100)
128 cd04980 IgV_L_kappa Immunoglob 98.8 8.9E-08 1.9E-12 60.0 8.2 77 2-83 3-93 (106)
129 cd00098 IgC Immunoglobulin Con 98.7 9.4E-08 2E-12 58.5 7.6 73 12-85 11-86 (95)
130 cd00099 IgV Immunoglobulin var 98.7 1.1E-07 2.4E-12 59.2 7.7 73 10-85 2-91 (105)
131 cd05878 Ig_Aggrecan_like Immun 98.7 7.3E-07 1.6E-11 56.3 10.7 83 13-97 1-108 (110)
132 cd05718 Ig1_PVR_like First imm 98.7 5E-07 1.1E-11 55.6 9.8 77 15-95 1-97 (98)
133 cd05879 Ig_P0 Immunoglobulin ( 98.7 9.7E-07 2.1E-11 56.3 11.1 79 6-87 5-106 (116)
134 cd04982 IgV_TCR_gamma Immunogl 98.7 2E-07 4.2E-12 59.4 7.8 76 4-82 3-98 (116)
135 cd05761 Ig2_Necl-1-4_like Seco 98.6 8.6E-07 1.9E-11 53.0 9.2 68 17-86 2-70 (82)
136 cd05880 Ig_EVA1 Immunoglobulin 98.6 1.3E-06 2.7E-11 55.7 10.3 80 6-86 5-104 (115)
137 KOG4222|consensus 98.6 7.2E-08 1.6E-12 79.9 5.4 85 5-99 231-316 (1281)
138 cd05775 Ig_SLAM-CD84_like_N N- 98.6 4.3E-07 9.3E-12 56.1 7.6 79 13-95 3-96 (97)
139 PF07686 V-set: Immunoglobulin 98.6 9.6E-07 2.1E-11 55.4 9.2 91 2-95 4-114 (114)
140 cd07705 Ig2_Necl-1 Second immu 98.5 2.4E-06 5.3E-11 51.1 9.5 68 17-86 2-71 (83)
141 cd05715 Ig_P0-like Immunoglobu 98.5 2.7E-06 5.9E-11 54.1 9.9 77 6-85 5-104 (116)
142 cd05902 Ig_Neurocan Immunoglob 98.5 3.4E-06 7.3E-11 53.2 10.0 83 13-97 1-108 (110)
143 cd05883 Ig2_Necl-2 Second immu 98.5 4.5E-06 9.8E-11 49.7 9.8 77 17-96 2-80 (82)
144 cd05884 Ig2_Necl-3 Second immu 98.5 1.7E-06 3.6E-11 51.9 8.0 68 17-85 2-70 (83)
145 cd04984 IgV_L_lambda Immunoglo 98.5 1.2E-06 2.5E-11 54.1 7.1 69 10-83 2-85 (98)
146 cd07706 IgV_TCR_delta Immunogl 98.4 2.6E-06 5.7E-11 54.2 8.7 79 2-83 2-94 (116)
147 cd07694 Ig2_CD4 Second immunog 98.4 5.5E-06 1.2E-10 49.6 9.3 75 10-96 10-86 (88)
148 cd05901 Ig_Versican Immunoglob 98.4 8.7E-06 1.9E-10 51.8 10.8 82 14-97 2-115 (117)
149 cd05886 Ig1_Nectin-1_like Firs 98.4 8E-06 1.7E-10 50.6 10.3 36 60-95 62-98 (99)
150 cd05846 Ig1_MRC-OX-2_like Firs 98.4 4.3E-06 9.3E-11 51.5 8.8 78 14-95 1-96 (97)
151 cd05888 Ig1_Nectin-4_like Frst 98.4 7.4E-06 1.6E-10 50.8 9.6 77 16-95 2-99 (100)
152 cd05711 Ig_FcalphaRI Immunoglo 98.3 3.7E-06 8E-11 51.6 7.1 71 3-81 5-75 (94)
153 cd05716 Ig_pIgR Immunoglobulin 98.3 1.1E-05 2.4E-10 49.7 8.7 73 9-84 2-87 (98)
154 cd00096 Ig Immunoglobulin doma 98.3 1.4E-05 3.1E-10 44.6 8.6 66 17-84 1-66 (74)
155 cd07700 IgV_CD8_beta Immunoglo 98.3 9.1E-06 2E-10 51.0 8.2 71 10-83 2-94 (107)
156 PHA02987 Ig domain OX-2-like p 98.2 3.4E-05 7.4E-10 52.5 10.7 88 7-98 23-124 (189)
157 cd05755 Ig2_ICAM-1_like Second 98.2 1.3E-05 2.9E-10 49.5 8.1 78 4-86 6-87 (100)
158 smart00407 IGc1 Immunoglobulin 98.2 2.5E-05 5.3E-10 45.8 8.8 67 17-84 2-71 (75)
159 cd05887 Ig1_Nectin-3_like Firs 98.2 2.9E-05 6.3E-10 47.8 9.3 77 15-95 1-95 (96)
160 cd05712 Ig_Siglec_N Immunoglob 98.2 1.8E-05 3.9E-10 50.6 8.5 76 5-83 5-102 (119)
161 cd05771 IgC_Tapasin_R Tapasin- 98.2 3.6E-05 7.8E-10 50.5 9.6 73 11-84 50-131 (139)
162 PF08205 C2-set_2: CD80-like C 98.2 3.4E-05 7.4E-10 46.5 8.8 72 14-86 14-86 (89)
163 cd05720 Ig_CD8_alpha Immunoglo 98.1 1.9E-05 4.2E-10 49.3 7.1 67 11-82 3-90 (104)
164 cd07698 IgC_MHC_I_alpha3 Class 98.1 6.5E-05 1.4E-09 45.9 8.4 68 14-85 14-84 (93)
165 cd05772 IgC_SIRP Signal-regula 98.1 0.00013 2.8E-09 46.1 10.0 71 11-84 18-92 (111)
166 cd05889 Ig1_DNAM-1_like First 98.1 6.8E-05 1.5E-09 46.1 8.4 75 15-93 1-93 (96)
167 PF07654 C1-set: Immunoglobuli 98.0 0.00018 3.9E-09 42.9 9.3 69 13-85 7-78 (83)
168 cd04981 IgV_H Immunoglobulin ( 98.0 8.5E-05 1.8E-09 47.4 8.2 75 5-82 3-97 (117)
169 cd05847 IgC_CH2_IgE CH2 domain 97.9 0.00012 2.5E-09 44.9 7.8 73 13-86 13-88 (94)
170 cd05770 IgC_beta2m Class I maj 97.9 0.00026 5.7E-09 43.3 8.6 67 13-83 14-82 (93)
171 cd07696 IgC_CH3 CH3 domain (th 97.8 0.00016 3.4E-09 44.5 6.8 79 5-84 5-86 (96)
172 cd05766 IgC_MHC_II_beta Class 97.8 0.00075 1.6E-08 41.3 9.8 69 12-84 12-83 (94)
173 cd05771 IgC_Tapasin_R Tapasin- 97.8 5.2E-05 1.1E-09 49.7 4.7 38 62-99 2-39 (139)
174 cd05719 Ig2_PVR_like Second im 97.8 0.00051 1.1E-08 42.2 8.7 70 14-87 15-85 (95)
175 cd07699 IgC_L Immunoglobulin C 97.8 9.8E-05 2.1E-09 45.8 5.6 73 11-84 14-89 (100)
176 cd05767 IgC_MHC_II_alpha Class 97.7 0.0006 1.3E-08 41.8 8.8 67 13-83 14-83 (94)
177 smart00406 IGv Immunoglobulin 97.7 0.00019 4.2E-09 42.0 6.3 61 16-79 1-80 (81)
178 cd05768 IgC_CH4 CH4 domain (fo 97.7 9E-05 2E-09 46.1 5.0 73 11-84 13-91 (102)
179 cd07697 IgC_TCR_gamma T cell r 97.7 0.00045 9.7E-09 42.5 7.7 67 13-83 15-84 (96)
180 PHA03376 BARF1; Provisional 97.7 0.0044 9.6E-08 42.5 12.6 73 8-85 20-111 (221)
181 cd07703 Ig2_Nectin-2_like Seco 97.6 0.0014 3E-08 40.2 9.1 71 15-89 16-87 (95)
182 cd05769 IgC_TCR_beta T cell re 97.5 0.00061 1.3E-08 43.3 6.8 76 12-88 16-96 (115)
183 PHA02633 hypothetical protein; 97.4 0.00095 2.1E-08 37.2 5.4 38 62-99 19-56 (63)
184 KOG3515|consensus 97.2 0.00026 5.6E-09 57.8 3.2 78 10-98 18-97 (741)
185 cd04985 IgC_CH1 CH1 domain (fi 97.2 0.0033 7.1E-08 38.6 7.4 70 13-84 15-87 (95)
186 cd05721 IgV_CTLA-4 Immunoglobu 97.2 0.006 1.3E-07 38.6 8.5 74 4-80 3-93 (115)
187 PF07354 Sp38: Zona-pellucida- 97.1 0.001 2.3E-08 47.6 4.6 49 28-84 12-60 (271)
188 cd07691 Ig_CD3_gamma_delta Imm 97.0 0.0052 1.1E-07 35.0 6.1 49 14-82 6-54 (69)
189 cd07704 Ig2_Nectin-3-4_like Se 96.9 0.024 5.2E-07 34.9 8.9 74 8-85 10-85 (97)
190 cd04986 IgC_CH2 CH2 domain (se 96.9 0.0034 7.3E-08 38.8 5.1 71 11-84 16-89 (99)
191 cd07692 Ig_CD3_epsilon Immunog 96.8 0.0027 5.9E-08 35.9 3.9 53 11-83 4-56 (65)
192 KOG1480|consensus 96.5 0.0015 3.2E-08 53.3 1.7 83 9-100 139-225 (909)
193 KOG4597|consensus 96.2 0.0087 1.9E-07 46.4 4.6 85 11-98 208-294 (560)
194 cd05735 Ig8_DSCAM Eight immuno 96.1 0.0034 7.5E-08 37.8 1.4 41 108-155 48-88 (88)
195 cd05762 Ig8_MLCK Eighth immuno 95.7 0.0058 1.3E-07 37.6 1.6 42 108-156 57-98 (98)
196 PF08204 V-set_CD47: CD47 immu 95.3 0.01 2.3E-07 38.4 1.7 84 11-96 24-120 (130)
197 PHA02982 hypothetical protein; 95.2 0.14 3.1E-06 35.8 6.9 73 10-87 35-126 (251)
198 cd07689 Ig2_VCAM-1 Second immu 94.7 0.18 3.9E-06 31.1 5.8 71 11-84 12-86 (99)
199 PHA03042 CD47-like protein; Pr 94.6 0.31 6.7E-06 35.5 7.6 73 11-97 28-106 (286)
200 PF11465 Receptor_2B4: Natural 94.3 0.38 8.2E-06 30.0 6.5 35 62-96 72-107 (108)
201 cd05890 Ig2_Nectin-1_like Seco 94.1 0.37 8.1E-06 29.4 6.0 72 17-93 23-96 (98)
202 PF05790 C2-set: Immunoglobuli 93.7 0.81 1.8E-05 27.0 8.0 34 62-95 44-78 (80)
203 PF06328 Lep_receptor_Ig: Ig-l 93.3 1.1 2.4E-05 27.1 7.5 65 7-79 11-80 (89)
204 cd05854 Ig6_Contactin-2 Sixth 93.3 0.048 1E-06 32.5 1.3 37 109-152 49-85 (85)
205 cd05893 Ig_Palladin_C C-termin 92.8 0.065 1.4E-06 31.1 1.4 33 109-148 43-75 (75)
206 cd04970 Ig6_Contactin_like Six 91.8 0.092 2E-06 31.0 1.2 38 108-152 48-85 (85)
207 cd05892 Ig_Myotilin_C C-termin 91.8 0.1 2.2E-06 30.3 1.4 33 109-148 43-75 (75)
208 PHA02865 MHC-like TNF binding 91.7 1.4 3.1E-05 33.3 7.5 65 16-83 216-303 (338)
209 PHA03052 Hypothetical protein; 91.4 1.1 2.3E-05 25.5 5.1 35 6-41 4-41 (69)
210 cd04974 Ig3_FGFR Third immunog 91.3 0.064 1.4E-06 32.2 0.2 33 109-148 57-89 (90)
211 cd05853 Ig6_Contactin-4 Sixth 91.2 0.1 2.2E-06 31.2 1.0 38 108-152 48-85 (85)
212 cd05852 Ig5_Contactin-1 Fifth 90.9 0.13 2.9E-06 29.6 1.2 33 109-148 41-73 (73)
213 cd05744 Ig_Myotilin_C_like Imm 90.2 0.18 3.9E-06 29.1 1.4 33 109-148 43-75 (75)
214 cd05858 Ig3_FGFR-2 Third immun 89.7 0.11 2.3E-06 31.2 0.1 34 108-148 56-89 (90)
215 cd05726 Ig4_Robo Fhird immunog 88.3 0.24 5.3E-06 29.5 1.0 36 109-151 49-84 (90)
216 cd05745 Ig3_Peroxidasin Third 88.0 0.26 5.7E-06 28.2 1.0 33 109-148 42-74 (74)
217 cd05754 Ig3_Perlecan_like Thir 87.9 1.6 3.6E-05 25.5 4.5 32 108-146 53-84 (85)
218 cd05723 Ig4_Neogenin Fourth im 87.7 0.35 7.7E-06 27.4 1.4 29 113-148 43-71 (71)
219 cd05870 Ig5_NCAM-2 Fifth immun 87.5 0.27 5.8E-06 29.9 0.9 33 109-148 66-98 (98)
220 cd05869 Ig5_NCAM-1 Fifth immun 87.2 0.35 7.5E-06 29.3 1.3 33 109-148 65-97 (97)
221 cd05725 Ig3_Robo Third immunog 86.8 0.4 8.7E-06 26.9 1.3 33 109-148 37-69 (69)
222 PHA02914 Immunoglobulin-like d 86.3 11 0.00024 29.3 8.9 37 62-98 82-119 (500)
223 cd05851 Ig3_Contactin-1 Third 85.9 0.4 8.6E-06 28.6 1.0 33 109-148 55-87 (88)
224 cd05763 Ig_1 Subgroup of the i 85.3 0.45 9.8E-06 27.2 1.0 31 111-148 44-74 (75)
225 cd05867 Ig4_L1-CAM_like Fourth 85.3 0.48 1E-05 27.2 1.2 33 109-148 43-75 (76)
226 cd04968 Ig3_Contactin_like Thi 85.2 0.46 1E-05 28.1 1.0 34 108-148 54-87 (88)
227 cd04975 Ig4_SCFR_like Fourth i 85.1 0.43 9.3E-06 29.4 0.9 35 107-148 65-99 (101)
228 cd04971 Ig_TrKABC_d5 Fifth dom 85.0 0.55 1.2E-05 27.6 1.3 33 109-148 48-80 (81)
229 cd05765 Ig_3 Subgroup of the i 84.9 0.64 1.4E-05 26.8 1.6 33 109-148 49-81 (81)
230 cd05748 Ig_Titin_like Immunogl 84.6 0.64 1.4E-05 26.4 1.5 33 109-148 42-74 (74)
231 cd05732 Ig5_NCAM-1_like Fifth 84.1 0.59 1.3E-05 28.0 1.2 33 109-148 64-96 (96)
232 KOG3515|consensus 84.1 3.5 7.5E-05 34.6 5.8 76 16-94 611-687 (741)
233 PHA03269 envelope glycoprotein 84.0 8.5 0.00019 30.7 7.5 71 10-81 338-414 (566)
234 cd05859 Ig4_PDGFR-alpha Fourth 83.9 0.51 1.1E-05 29.1 0.9 35 107-148 65-99 (101)
235 cd05731 Ig3_L1-CAM_like Third 83.9 0.55 1.2E-05 26.3 1.0 33 109-148 38-70 (71)
236 cd05746 Ig4_Peroxidasin Fourth 83.7 0.67 1.5E-05 26.1 1.3 31 109-146 38-68 (69)
237 cd05773 Ig8_hNephrin_like Eigh 83.6 0.62 1.3E-05 29.1 1.2 31 116-153 79-109 (109)
238 cd05876 Ig3_L1-CAM Third immun 83.4 0.62 1.3E-05 26.4 1.1 33 109-148 38-70 (71)
239 cd05863 Ig2_VEGFR-3 Second imm 83.2 0.55 1.2E-05 26.6 0.7 34 108-148 32-65 (67)
240 cd05868 Ig4_NrCAM Fourth immun 82.9 0.72 1.6E-05 26.6 1.2 29 113-148 47-75 (76)
241 cd05730 Ig3_NCAM-1_like Third 82.8 0.68 1.5E-05 27.8 1.1 33 109-148 60-92 (95)
242 cd04969 Ig5_Contactin_like Fif 82.5 0.79 1.7E-05 26.0 1.3 33 109-148 41-73 (73)
243 cd04978 Ig4_L1-NrCAM_like Four 82.3 0.71 1.5E-05 26.3 1.0 32 110-148 44-75 (76)
244 cd05894 Ig_C5_MyBP-C C5 immuno 81.9 0.92 2E-05 26.9 1.4 34 108-148 53-86 (86)
245 cd05864 Ig2_VEGFR-2 Second imm 81.2 0.64 1.4E-05 26.5 0.5 33 109-148 36-68 (70)
246 cd05728 Ig4_Contactin-2-like F 81.2 0.91 2E-05 26.7 1.2 33 109-148 53-85 (85)
247 cd05857 Ig2_FGFR Second immuno 80.2 1.2 2.6E-05 25.9 1.5 30 112-148 56-85 (85)
248 cd05760 Ig2_PTK7 Second immuno 80.0 0.83 1.8E-05 26.4 0.7 32 110-148 41-72 (77)
249 cd04972 Ig_TrkABC_d4 Fourth do 80.0 1.1 2.4E-05 26.6 1.3 33 109-148 58-90 (90)
250 cd05865 Ig1_NCAM-1 First immun 78.7 1.1 2.4E-05 27.3 1.0 34 108-148 61-95 (96)
251 cd05764 Ig_2 Subgroup of the i 78.5 1.3 2.8E-05 25.1 1.2 29 113-148 46-74 (74)
252 PHA03270 envelope glycoprotein 78.0 25 0.00053 27.8 8.1 70 10-81 230-305 (466)
253 cd04976 Ig2_VEGFR Second immun 77.6 1.1 2.5E-05 25.3 0.8 33 109-148 37-69 (71)
254 cd05855 Ig_TrkB_d5 Fifth domai 75.7 1.5 3.2E-05 25.8 1.0 32 109-147 46-77 (79)
255 PF07679 I-set: Immunoglobulin 75.6 1.6 3.4E-05 25.6 1.1 34 108-148 57-90 (90)
256 PHA03376 BARF1; Provisional 75.4 12 0.00026 26.2 5.3 26 14-39 139-164 (221)
257 PHA02914 Immunoglobulin-like d 74.7 19 0.00042 28.1 6.8 76 7-83 272-368 (500)
258 cd05737 Ig_Myomesin_like_C C-t 74.1 1.6 3.5E-05 26.1 0.9 32 109-147 60-91 (92)
259 PHA03271 envelope glycoprotein 73.0 32 0.00069 27.1 7.5 71 10-81 256-332 (490)
260 cd05750 Ig_Pro_neuregulin Immu 72.3 2.3 5E-05 23.9 1.2 29 109-144 45-73 (75)
261 cd05856 Ig2_FGFRL1-like Second 71.4 2.6 5.6E-05 24.1 1.3 32 109-147 50-81 (82)
262 cd05742 Ig1_VEGFR_like First i 70.6 2.3 5.1E-05 24.8 1.0 34 108-148 50-83 (84)
263 cd05747 Ig5_Titin_like M5, fif 69.3 3 6.6E-05 24.8 1.3 31 109-146 61-91 (92)
264 cd05743 Ig_Perlecan_D2_like Im 67.9 2.4 5.2E-05 24.4 0.7 32 109-147 44-75 (78)
265 PHA03273 envelope glycoprotein 67.6 62 0.0013 25.9 8.4 71 10-81 246-322 (486)
266 PHA03189 UL14 tegument protein 66.6 54 0.0012 24.7 8.7 28 62-90 135-162 (348)
267 cd05756 Ig1_IL1R_like First im 64.9 4.6 0.0001 24.4 1.5 33 109-148 62-94 (94)
268 cd05891 Ig_M-protein_C C-termi 61.1 4.6 0.0001 24.1 1.0 32 109-147 60-91 (92)
269 PHA03240 envelope glycoprotein 60.5 7.4 0.00016 27.5 2.0 73 9-82 33-125 (258)
270 KOG1026|consensus 57.8 5.6 0.00012 33.6 1.2 72 10-97 203-274 (774)
271 cd05860 Ig4_SCFR Fourth immuno 56.0 6.2 0.00014 24.4 1.0 38 104-148 62-99 (101)
272 PF06832 BiPBP_C: Penicillin-B 54.5 43 0.00094 19.7 8.5 55 16-88 31-85 (89)
273 PF02440 Adeno_E3_CR1: Adenovi 52.5 41 0.00089 18.9 4.5 21 11-35 2-22 (63)
274 PHA03112 IL-18 binding protein 44.1 93 0.002 20.6 5.8 27 11-37 35-63 (141)
275 PF01688 Herpes_gI: Alphaherpe 43.3 84 0.0018 21.3 4.8 24 62-85 125-148 (161)
276 PF05955 Herpes_gp2: Equine he 37.9 1E+02 0.0022 21.4 4.6 61 20-83 113-178 (226)
277 PF02480 Herpes_gE: Alphaherpe 35.2 51 0.0011 26.2 3.3 21 62-82 270-290 (439)
278 PHA03283 envelope glycoprotein 35.0 1.2E+02 0.0026 24.7 5.2 37 61-97 134-170 (542)
279 PHA03290 envelope glycoprotein 29.8 1.7E+02 0.0037 22.4 5.1 22 62-83 130-151 (357)
280 PHA03289 envelope glycoprotein 29.6 1.8E+02 0.0039 22.2 5.1 33 62-94 123-155 (352)
281 PHA03282 envelope glycoprotein 29.4 1.3E+02 0.0027 24.3 4.5 38 61-98 124-163 (540)
282 KOG3611|consensus 29.0 59 0.0013 27.7 2.9 59 16-83 571-634 (737)
283 PHA03292 envelope glycoprotein 26.6 2.1E+02 0.0045 22.4 5.1 26 62-87 129-154 (413)
284 PHA03291 envelope glycoprotein 23.1 2.5E+02 0.0054 21.8 4.9 35 62-96 130-164 (401)
285 PHA03282 envelope glycoprotein 21.5 1.1E+02 0.0023 24.7 2.9 21 62-82 334-354 (540)
286 KOG0613|consensus 21.1 79 0.0017 28.6 2.3 75 8-86 343-418 (1205)
287 PF13220 DUF4028: Protein of u 20.7 75 0.0016 17.1 1.3 17 70-86 7-23 (65)
288 PHA03286 envelope glycoprotein 20.4 1.2E+02 0.0026 24.3 2.9 20 62-81 308-327 (492)
No 1
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.84 E-value=2.3e-19 Score=111.46 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=82.4
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
|...++.+.+..|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+.... ..+.|.|.++.++|+|.|+|.|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kd-g~~l~~~~~~~~~~~~-----~~s~L~I~~~~~~D~G~Ytc~a~ 76 (98)
T cd05762 3 IIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKF-RKQIQEGEGIKIENTE-----NSSKLTITEGQQEHCGCYTLEVE 76 (98)
T ss_pred eEECCcCEEEECCCEEEEEEEEcccCCCceEEEEC-CEEecCCCcEEEEecC-----CeeEEEECCCChhhCEEEEEEEE
Confidence 45677788899999999999999999999999999 8888777777665433 12479999999999999999999
Q ss_pred cCCCceEEEEEEEEeccCCCC
Q psy16261 82 NTLGGSEGVIKVYNIGYFGSD 102 (158)
Q Consensus 82 n~~g~~~~~~~l~v~~~~~~~ 102 (158)
|.+|...+.+.|.|.+.|.+|
T Consensus 77 N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 77 NKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred cCCCceeEEEEEEEecCCCCC
Confidence 999999999999999987655
No 2
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.78 E-value=9.4e-18 Score=103.06 Aligned_cols=89 Identities=24% Similarity=0.326 Sum_probs=73.5
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+...|..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....+. .++|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~ 78 (92)
T cd05737 4 VGGLPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKN-DQALALSDHYNVKVEQGK----YASLTIKGVSSEDSGKYGIVVK 78 (92)
T ss_pred eccCCceEEEeCCCcEEEEEEEEecCCCeEEEEEC-CEECccCCCEEEEEcCCC----EEEEEEccCChhhCEEEEEEEE
Confidence 34456778899999999999999999999999999 888776666665533211 2379999999999999999999
Q ss_pred cCCCceEEEEEEEE
Q psy16261 82 NTLGGSEGVIKVYN 95 (158)
Q Consensus 82 n~~g~~~~~~~l~v 95 (158)
|.+|.....+.|.|
T Consensus 79 N~~G~~~~~~~v~v 92 (92)
T cd05737 79 NKYGGETVDVTVSV 92 (92)
T ss_pred ECCCcceEEEEEeC
Confidence 99999988887754
No 3
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.76 E-value=6e-18 Score=99.49 Aligned_cols=73 Identities=26% Similarity=0.507 Sum_probs=64.5
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.++.+...+ +|.|.+++.+|.|.|+|.|.|..|.......|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~-~~~l~~~~r~~~~~~g--------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKG-TELLVNNSRISIWDDG--------SLEILNITKLDEGSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeC-CEecccCCCEEEcCCC--------EEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence 67899999999999999999999 7777667777776555 79999999999999999999999999888877
Q ss_pred EE
Q psy16261 94 YN 95 (158)
Q Consensus 94 ~v 95 (158)
.|
T Consensus 72 ~~ 73 (73)
T cd05852 72 SV 73 (73)
T ss_pred EC
Confidence 54
No 4
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.76 E-value=1.2e-17 Score=101.72 Aligned_cols=85 Identities=25% Similarity=0.318 Sum_probs=70.1
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
|.+.+....+.+|+.+.|.|.+.|.|.|.++|+++ +..+....++... . +.|.|.+++.+|.|.|+|.|.
T Consensus 4 i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~-~--------~~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 4 INVKFKDTYALKGQNVTLECFALGNPVPVIRWRKI-LEPMPATAEISMS-G--------AVLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred eEEccccEEEeCCCcEEEEEEecccCCCEEEEEEC-CcCCCCCCEEecC-C--------CEEEECcCChhhCEEEEEEEE
Confidence 45666777889999999999999999999999999 6665544443221 1 269999999999999999999
Q ss_pred cCCCceEEEEEEEEe
Q psy16261 82 NTLGGSEGVIKVYNI 96 (158)
Q Consensus 82 n~~g~~~~~~~l~v~ 96 (158)
|..|.....+.|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999998888763
No 5
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.76 E-value=3.6e-17 Score=99.61 Aligned_cols=86 Identities=22% Similarity=0.338 Sum_probs=70.4
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK 92 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 92 (158)
|+.+.|.|.+.|.|.+.+.|+++ +..+... .++.+.... ......+.|.|.++...|+|.|+|.|.|.+|...+.+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~-~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKE-DRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeC-CEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78899999999999999999999 7766543 466555432 12234568999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy16261 93 VYNIGYFGS 101 (158)
Q Consensus 93 l~v~~~~~~ 101 (158)
|.|...|..
T Consensus 79 L~V~~~P~~ 87 (88)
T cd05735 79 LTVQEPPDP 87 (88)
T ss_pred EEEeCCCCC
Confidence 999887644
No 6
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.76 E-value=6.1e-18 Score=99.78 Aligned_cols=74 Identities=26% Similarity=0.511 Sum_probs=63.4
Q ss_pred cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261 13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK 92 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 92 (158)
+|+.+.|.|.+.|.|.|.+.|+|+ +..+....++.+...+ .|.|.+++.+|.|.|+|.|.|.+|.....+.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 71 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKG-GSQLSVDRRHLVLSSG--------TLRISRVALHDQGQYECQAVNIVGSQRTVAQ 71 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEEC-CEECCCCCCeEEccCC--------eEEEeeCCHHhCEEEEEEEEeCCCceeEEEE
Confidence 589999999999999999999999 7777655555444433 7999999999999999999999999988888
Q ss_pred EEE
Q psy16261 93 VYN 95 (158)
Q Consensus 93 l~v 95 (158)
|.|
T Consensus 72 L~V 74 (74)
T cd05745 72 LTV 74 (74)
T ss_pred EeC
Confidence 754
No 7
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.75 E-value=5.2e-17 Score=98.48 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=68.5
Q ss_pred eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
.+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.+.... ..+.|.|.++.++|+|.|+|.|.|.+|.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~-~~~i~~~~~r~~~~~~~-----~~~~L~I~~~~~~D~G~Y~c~a~N~~G~ 77 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRG-DKAFTETEGRVRVESYK-----DLSSFVIEGAEREDEGVYTITVTNPVGE 77 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEEC-CEECccCCCeEEEEEcC-----CeEEEEECCCccCcCEEEEEEEEeCCCc
Confidence 45688999999999999999999999999 7777543 466554432 1347999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
..+.+.|.|
T Consensus 78 ~~~~~~l~V 86 (86)
T cd05894 78 DHASLFVKV 86 (86)
T ss_pred EEEEEEEEC
Confidence 988888764
No 8
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.75 E-value=7.5e-17 Score=100.49 Aligned_cols=90 Identities=24% Similarity=0.294 Sum_probs=70.6
Q ss_pred CceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 6 SQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
.+.+.+.+|+.+.|.|.+.| .|.|.+.|+|+ +..+.......+...........+.|.|..+..+|+|.|+|.|.|..
T Consensus 10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~ 88 (101)
T cd04975 10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD 88 (101)
T ss_pred CceEEEECCCCEEEEEEEEecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence 34677899999999999999 89999999999 88776544332222110112234589999999999999999999999
Q ss_pred CceEEEEEEEEe
Q psy16261 85 GGSEGVIKVYNI 96 (158)
Q Consensus 85 g~~~~~~~l~v~ 96 (158)
|..+..+.|.|.
T Consensus 89 G~~~~t~~L~V~ 100 (101)
T cd04975 89 ASKSLTFELYVN 100 (101)
T ss_pred ccEEEEEEEEEE
Confidence 999998888775
No 9
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.75 E-value=7.8e-17 Score=98.55 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=69.6
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+..+++...+.+|+.+.|.|.+.|.|.|.+.|+++ +..+............ ..+.|.|.++..+|.|.|+|.|.
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~-g~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~g~Y~C~A~ 76 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIA-GLIVIQTRTDTLETTV-----DIYNLQLSNITSETQTTVTCTAE 76 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEEC-CEEccCCccEEEEecC-----CEEEEEEecCCcccCEEEEEEEE
Confidence 44567777799999999999999999999999999 7666444332121111 23479999999999999999999
Q ss_pred cCCCceEEEEEEEE
Q psy16261 82 NTLGGSEGVIKVYN 95 (158)
Q Consensus 82 n~~g~~~~~~~l~v 95 (158)
|..|...+.+.|.|
T Consensus 77 N~~G~~~~~~~L~v 90 (90)
T cd04972 77 NPVGQANVSVQVTV 90 (90)
T ss_pred CCCCceeEEEEEeC
Confidence 99999988888753
No 10
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.74 E-value=1.4e-16 Score=97.85 Aligned_cols=85 Identities=20% Similarity=0.397 Sum_probs=71.4
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
...+..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+.... ..+.|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTE-----YKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred cccCccEEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcC-----CeeEEEECCCCcccCEeEEEEEEc
Confidence 3456678899999999999999999999999999 7777666666665432 124799999999999999999999
Q ss_pred CCCceEEEEEE
Q psy16261 83 TLGGSEGVIKV 93 (158)
Q Consensus 83 ~~g~~~~~~~l 93 (158)
..|.....+.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99998887765
No 11
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.73 E-value=8.4e-17 Score=94.14 Aligned_cols=71 Identities=25% Similarity=0.535 Sum_probs=60.7
Q ss_pred CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
++.|.|.+.|.|.|.++|+++ +..+....++.+...+ .|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~-g~~~~~~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKN-GDMVIPSDYFKIVKEH--------NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEEC-CeECCCCCCEEEEecC--------CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999 7766666666665554 5888899999999999999999999998888754
No 12
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.72 E-value=2.9e-16 Score=95.57 Aligned_cols=84 Identities=24% Similarity=0.341 Sum_probs=68.1
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+...+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....... ... +.|.|.+++.+|+|.|+|.|.
T Consensus 4 ~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~-~~~~~~~~~~~-~~~--------~~L~i~~v~~~D~G~Y~C~a~ 73 (88)
T cd04968 4 IVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKV-DGSMPSSAEIS-MSG--------AVLKIPNIQFEDEGTYECEAE 73 (88)
T ss_pred EEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEEC-CCcCCCccEEE-EeC--------CEEEECCCCcccCEEEEEEEE
Confidence 45566777789999999999999999999999998 54443333332 122 279999999999999999999
Q ss_pred cCCCceEEEEEEEE
Q psy16261 82 NTLGGSEGVIKVYN 95 (158)
Q Consensus 82 n~~g~~~~~~~l~v 95 (158)
|..|.......|.|
T Consensus 74 N~~G~~~~~~~l~V 87 (88)
T cd04968 74 NIKGKDTHQGRIYV 87 (88)
T ss_pred ECCCcEEEEEEEEE
Confidence 99999988888866
No 13
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.72 E-value=9.8e-17 Score=97.09 Aligned_cols=82 Identities=24% Similarity=0.362 Sum_probs=69.8
Q ss_pred ecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
..|....+..|+.+.|.|.+.|.|.|.+.|+++ +..+....++... .+ .|.|.++..+|+|.|+|.|.|.
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~-~~--------~L~i~~~~~~D~G~Y~C~a~N~ 73 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKN-GQPLASENRIEVE-AG--------DLRITKLSLSDSGMYQCVAENK 73 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEEC-CEECCCCCeEEEe-CC--------EEEEeeCCHHHCEEEEEEEECC
Confidence 356667789999999999999999999999999 7777666666543 22 6999999999999999999999
Q ss_pred CCceEEEEEEEE
Q psy16261 84 LGGSEGVIKVYN 95 (158)
Q Consensus 84 ~g~~~~~~~l~v 95 (158)
.|...+.+.|.|
T Consensus 74 ~G~~~~~~~l~V 85 (85)
T cd05728 74 HGTIYASAELAV 85 (85)
T ss_pred CCeEEEEEEEEC
Confidence 999988887754
No 14
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.72 E-value=7.1e-17 Score=94.93 Aligned_cols=73 Identities=27% Similarity=0.549 Sum_probs=64.2
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+...+ .|.|.+++.+|+|.|+|.|.|.+|.....+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~-~~~~~~~~~~~~~~~~--------~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKG-TELLTNSSRICIWPDG--------SLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEEC-CEEcccCCCEEECCCC--------eEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 67899999999999999999999 7777766777665544 79999999999999999999999999988887
Q ss_pred EE
Q psy16261 94 YN 95 (158)
Q Consensus 94 ~v 95 (158)
.|
T Consensus 72 ~V 73 (73)
T cd04969 72 SV 73 (73)
T ss_pred EC
Confidence 64
No 15
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.72 E-value=1.1e-16 Score=94.43 Aligned_cols=74 Identities=22% Similarity=0.477 Sum_probs=60.8
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.+.|+|+ +..+.. ..++.+.....+ .++|.|.++..+|+|.|+|.|.|..|...+...|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~-~~~i~~~~~r~~~~~~~~g----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRN-NEMVQYNTDRISLYQDNSG----RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEEC-CEECcCCCCeEEEEEcCCC----cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999 777764 356666543311 136999999999999999999999999998888764
No 16
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.72 E-value=3.2e-16 Score=96.86 Aligned_cols=89 Identities=22% Similarity=0.261 Sum_probs=68.6
Q ss_pred eecCceEEEecCCCEEEEeEEeecCC-CeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPK-PITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA 80 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 80 (158)
.+.|....+..|+.+.|.|.+.|.|. |.+.|++.++..+.. ..++.+.... + ..+.|.|.+++.+|+|.|+|.|
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~-~---~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRND-D---YSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCC-C---CceEEEEeccChhhCEEEEEEE
Confidence 45566667899999999999999995 799999832665544 4455544332 1 1247999999999999999999
Q ss_pred EcCC-CceEEEEEEEE
Q psy16261 81 KNTL-GGSEGVIKVYN 95 (158)
Q Consensus 81 ~n~~-g~~~~~~~l~v 95 (158)
.|.. |..++++.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9997 87888887765
No 17
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.71 E-value=2.6e-16 Score=96.62 Aligned_cols=88 Identities=25% Similarity=0.367 Sum_probs=71.7
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
...|..+.+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....++...... +. .++|.|.+++.+|+|.|+|.|.|
T Consensus 5 ~~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~-~~~~~~~~~~~~~~~~-~~---~~~L~I~~~~~~D~G~Y~C~a~N 79 (92)
T cd05891 5 GGLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKN-DQDIELSEHYSVKLEQ-GK---YASLTIKGVTSEDSGKYSINVKN 79 (92)
T ss_pred ccCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEEC-CEECCCCCCEEEEEcC-CC---EEEEEECCCChhhCEEEEEEEEe
Confidence 3456778899999999999999999999999999 7766666555443322 11 24699999999999999999999
Q ss_pred CCCceEEEEEEEE
Q psy16261 83 TLGGSEGVIKVYN 95 (158)
Q Consensus 83 ~~g~~~~~~~l~v 95 (158)
.+|.....+.|.|
T Consensus 80 ~~G~~~~~~~v~~ 92 (92)
T cd05891 80 KYGGETVDVTVSV 92 (92)
T ss_pred CCCceeeEEEEEC
Confidence 9999998888754
No 18
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.71 E-value=4.8e-16 Score=94.80 Aligned_cols=88 Identities=23% Similarity=0.449 Sum_probs=76.9
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
|...+..+.+.+|+.+.|.|.+.+.|.|.+.|+++ +..+..+.++.+.... ..+.|.|.++..+|+|.|+|.+.
T Consensus 3 ~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~~~ 76 (90)
T PF07679_consen 3 FTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDG-----GSSSLTIKNVTREDAGTYTCVAS 76 (90)
T ss_dssp EEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEET-----TEEEEEESSESGGGSEEEEEEEE
T ss_pred EEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeeccc-----ceeEEccCCCChhhCEEEEEEEE
Confidence 44566788899999999999999999999999999 8888888888776654 24589999999999999999999
Q ss_pred cCCCceEEEEEEEE
Q psy16261 82 NTLGGSEGVIKVYN 95 (158)
Q Consensus 82 n~~g~~~~~~~l~v 95 (158)
|..|...+.+.|.|
T Consensus 77 n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 77 NSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEC
Confidence 99999988888765
No 19
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.71 E-value=4.9e-16 Score=95.20 Aligned_cols=88 Identities=20% Similarity=0.312 Sum_probs=69.9
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+.+++..+.+.+|+.+.|.|.+.|.|. .+.|+++++..+..+.++.+...+ ..+.|.|.++..+|+|.|+|.|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g-----~~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEG-----VRSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCC-----CeeEEEEecCChHHCEEEEEEEE
Confidence 346677788999999999999999998 899998647777666677665433 12379999999999999999999
Q ss_pred cCCCce-EEEEEEEE
Q psy16261 82 NTLGGS-EGVIKVYN 95 (158)
Q Consensus 82 n~~g~~-~~~~~l~v 95 (158)
|..|.. ..++.|.+
T Consensus 77 N~~G~~~~~~i~l~~ 91 (92)
T cd05866 77 DAKGQTQEATVVLEI 91 (92)
T ss_pred cCCCcEEEEEEEEEE
Confidence 999986 55566543
No 20
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.71 E-value=3.9e-16 Score=92.00 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=62.3
Q ss_pred CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
.+.|.|.+.|.|.|.+.|+++ +..+....++.+.... ..+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKD-GKPLKLSGRVQIETTA-----SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEEC-CEEcCCCCeEEEEECC-----CeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999 8877666666665432 1347999999999999999999999999988888754
No 21
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.70 E-value=6.7e-16 Score=96.27 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=68.8
Q ss_pred eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEee-cccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEK-FSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
...+..|+.+.|.|.+.|.|.|.+.|+|+ +..+..+.+....... ...+...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kd-g~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKD-NRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEEC-CEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 45678899999999999999999999999 8877655432221110 011223458999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy16261 87 SEGVIKVYNI 96 (158)
Q Consensus 87 ~~~~~~l~v~ 96 (158)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9888888774
No 22
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.70 E-value=2e-16 Score=93.40 Aligned_cols=74 Identities=28% Similarity=0.482 Sum_probs=59.7
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.+.|+|+ +..+.. ..++.+..... ....|.|.+++.+|+|.|+|.|.|..|..++...|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~-~~~l~~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKE-NESLTHNTDRVSMHQDNC----GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEEC-CEECCCCCCeEEEEEcCC----CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 47999999999999999999 666654 35665544321 1236999999999999999999999999998888764
No 23
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.69 E-value=4.6e-16 Score=92.19 Aligned_cols=72 Identities=29% Similarity=0.510 Sum_probs=60.3
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV 90 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 90 (158)
|+.+.|.|.+.|.|.|.++|+++ +..+... .++.. ..+ .|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~-g~~i~~~~~~~~~~~-~~~--------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 70 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSIN-GAPIEGTDPDPRRHV-SSG--------ALILTDVQPSDTAVYQCEARNRHGNLLAN 70 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEEC-CEECCCCCCCceEEe-eCC--------EEEECCCChhhCEEEEEEEECCCCeEEEE
Confidence 67899999999999999999999 7766543 23322 222 69999999999999999999999999888
Q ss_pred EEEEE
Q psy16261 91 IKVYN 95 (158)
Q Consensus 91 ~~l~v 95 (158)
+.|.|
T Consensus 71 ~~l~V 75 (76)
T cd05867 71 AHVHV 75 (76)
T ss_pred EEEEE
Confidence 88876
No 24
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.69 E-value=1e-15 Score=94.86 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=66.6
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-----CeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 76 (158)
|...+....+..|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.+.... ..+.|.|.+++.+|.|.|
T Consensus 5 i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~-~~~~~~~~~~~~~~~~v~~~~-----~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 5 ITYVENQTAMELEEQITLTCEASGDPIPSITWRTS-TRNISSEEKTLDGHIVVRSHA-----RVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred EEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEEC-CccccCCccccCccEEEEcCc-----cEEEEEEecCccCcCEEE
Confidence 34445444456689999999999999999999998 6554322 223222211 235799999999999999
Q ss_pred EEEEEcCCCceEEEEEEEE
Q psy16261 77 KCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 77 ~C~a~n~~g~~~~~~~l~v 95 (158)
+|.|.|..|.....+.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999998888764
No 25
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.69 E-value=7.9e-16 Score=94.97 Aligned_cols=82 Identities=28% Similarity=0.524 Sum_probs=67.8
Q ss_pred eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
.+.+..|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.....+ +.|.|.+++.+|.|.|+|.|.|..|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~-g~~~~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKD-GEPIESGEEKYSFNEDG-------SEMTILDVDKLDEAEYTCIAENKAGE 83 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEEC-CEECcCCCCEEEEeCCC-------CEEEECCCChhhCEEEEEEEEcCCCe
Confidence 34678999999999999999999999999 7776554 444433222 26999999999999999999999999
Q ss_pred eEEEEEEEEec
Q psy16261 87 SEGVIKVYNIG 97 (158)
Q Consensus 87 ~~~~~~l~v~~ 97 (158)
....+.|.|..
T Consensus 84 ~~~~~~L~V~~ 94 (95)
T cd05730 84 QEAEIHLKVFA 94 (95)
T ss_pred EEEEEEEEEEe
Confidence 99888888753
No 26
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.69 E-value=6.2e-16 Score=91.39 Aligned_cols=74 Identities=23% Similarity=0.450 Sum_probs=59.8
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.++|+|+ +..+.. ..++.+.....+ ...|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~-~~~i~~~~~r~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKN-NEMLTYNTDRISLYQDNCG----RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEEC-CEECCCCCCcEEEEEcCCC----eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999 777764 356655433211 236999999999999999999999999998888754
No 27
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.68 E-value=5.4e-16 Score=91.36 Aligned_cols=74 Identities=26% Similarity=0.474 Sum_probs=61.9
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
|+.+.|.|.+.|.|.|.+.|+++++..+....++.....+ .|.|..+..+|+|.|+|.|.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~--------~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--------TLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC--------EEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999999999999997547776655555554444 79999999999999999999999998888777
Q ss_pred EE
Q psy16261 94 YN 95 (158)
Q Consensus 94 ~v 95 (158)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 54
No 28
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.68 E-value=2.6e-16 Score=91.55 Aligned_cols=68 Identities=26% Similarity=0.592 Sum_probs=59.0
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
+.|.|.+.|.|.|.++|+|+ +..+....++.+...+ .|.|.++..+|+|.|+|.|.|.+|..+..+.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~~~~~--------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKD-GVQVTESGKFHISPEG--------YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEEC-CEECCCCCCEEECCCC--------EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47999999999999999999 7777666666665444 79999999999999999999999999887766
No 29
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.68 E-value=8.4e-16 Score=91.06 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=59.9
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI 91 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 91 (158)
|+.+.|.|.+.|.|.|.+.|+++ +..+.... ........ .|.|.+++..|.|.|+|.|.|..|...+.+
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~-g~~i~~~~~~~~~~~~~~--------~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTN-GVPIEIAPTDPSRKVDGD--------TIIFSKVQERSSAVYQCNASNEYGYLLANA 71 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEEC-CEEccccCCCceEEecCC--------EEEECCCCHhhCEEEEEEEEcCCCEEEEEE
Confidence 67899999999999999999999 87775332 11111122 588999999999999999999999999998
Q ss_pred EEEE
Q psy16261 92 KVYN 95 (158)
Q Consensus 92 ~l~v 95 (158)
.|.|
T Consensus 72 ~l~v 75 (76)
T cd05868 72 FVNV 75 (76)
T ss_pred EEEe
Confidence 8876
No 30
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.67 E-value=1.6e-15 Score=91.59 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=64.5
Q ss_pred EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 88 (158)
+.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+....+........ ....|.|.++..+|+|.|+|.|.|..|...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKN-GKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEEC-CEECCCCCceeeeEEeC----CceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 4577899999999999999999999999 77776543321111110 123699999999999999999999999999
Q ss_pred EEEEEEE
Q psy16261 89 GVIKVYN 95 (158)
Q Consensus 89 ~~~~l~v 95 (158)
..+.|.|
T Consensus 79 ~~~~l~v 85 (85)
T cd05857 79 HTYHLDV 85 (85)
T ss_pred EEEEEEC
Confidence 8888764
No 31
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.67 E-value=1.8e-15 Score=89.84 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=58.0
Q ss_pred EEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 18 ~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
-|.|.+.|.|.|.++|+|+ +..+..+.++.............+.|.|.++...|+|.|+|.|+|.+|..+..+.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kn-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHE-GAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEEC-CEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999999999999999 888876654422211101111245799999999999999999999999988877653
No 32
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.66 E-value=2.7e-15 Score=93.13 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=65.6
Q ss_pred CceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceeeec-----CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLIHE-----GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 79 (158)
+..+.+.+|+.+.|.|.+.|.|.|.+.|++.+ +..+.. ..++.+.... ..+.|.|.+++.+|+|.|+|.
T Consensus 8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~-----~~~~L~I~~v~~~D~G~Y~C~ 82 (98)
T cd05870 8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQH-----GESSLHIKDVKLSDSGRYDCE 82 (98)
T ss_pred eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecC-----CeeEEEEeeCCcCCCEEEEEE
Confidence 45567889999999999999999999999852 333321 2355443211 123799999999999999999
Q ss_pred EEcCCCceEEEEEEEE
Q psy16261 80 AKNTLGGSEGVIKVYN 95 (158)
Q Consensus 80 a~n~~g~~~~~~~l~v 95 (158)
|.|.+|....++.|.|
T Consensus 83 A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 83 AASRIGGHQKSMYLDI 98 (98)
T ss_pred EeccCCcceeEEEEeC
Confidence 9999999888877753
No 33
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.66 E-value=5.4e-15 Score=93.50 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=67.0
Q ss_pred cCCCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCC-CCCCeEEEEEEEcCCCceEEE
Q psy16261 13 LAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYKCNAKNTLGGSEGV 90 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C~a~n~~g~~~~~ 90 (158)
.|..+.|.|.+.|.|.|.++|+++ +..+.. ..++...... ......+.|.|.++. .+|.|.|+|.|.|.+|.....
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~-g~~l~~~~~r~~~~~~~-~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~ 99 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKN-GVPLDLGNPRYEETTEH-TGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLD 99 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEEC-CEECCCCCCeEEEEeec-cCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEE
Confidence 467899999999999999999999 777653 3455443222 111123579999997 589999999999999999999
Q ss_pred EEEEEeccC
Q psy16261 91 IKVYNIGYF 99 (158)
Q Consensus 91 ~~l~v~~~~ 99 (158)
+.|.+...|
T Consensus 100 i~L~~~~~p 108 (109)
T cd05773 100 IQLVSTSRP 108 (109)
T ss_pred EEEEecCCC
Confidence 999988765
No 34
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.66 E-value=1.5e-15 Score=92.82 Aligned_cols=78 Identities=23% Similarity=0.447 Sum_probs=63.5
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeee-------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
|+.+.|.|.+.|.|.|.+.|++++...+ ....++.+...+ .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~--------~L~I~~v~~~D~G~Y~C~a~N~~G~ 72 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG--------DLTITNVQRSDVGYYICQTLNVAGS 72 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC--------eEEEeeCChhhCEEEEEEEEcCCCc
Confidence 6789999999999999999999833321 123455554333 6999999999999999999999999
Q ss_pred eEEEEEEEEeccC
Q psy16261 87 SEGVIKVYNIGYF 99 (158)
Q Consensus 87 ~~~~~~l~v~~~~ 99 (158)
....+.|.|....
T Consensus 73 ~~~~~~l~V~~~~ 85 (90)
T cd05726 73 ILTKAYLEVTDVI 85 (90)
T ss_pred eEEEEEEEEeecc
Confidence 9999999988753
No 35
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.66 E-value=1.9e-15 Score=90.00 Aligned_cols=75 Identities=27% Similarity=0.421 Sum_probs=60.4
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
|+.+.|.|.+.|.|.|.+.|+++ +..+....++.+.... ..+.|.|.++..+|+|.|+|.|.|..|.......+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~-~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~ 74 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLN-WGHVPDSARVSITSEG-----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDG 74 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEEC-CeECCCCCCEEEEECC-----CEEEEEECCCChHHCEEEEEEEEecCCEEEecccE
Confidence 67899999999999999999999 6666555566554332 12479999999999999999999999988665544
Q ss_pred E
Q psy16261 94 Y 94 (158)
Q Consensus 94 ~ 94 (158)
.
T Consensus 75 ~ 75 (78)
T cd05743 75 I 75 (78)
T ss_pred E
Confidence 3
No 36
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.66 E-value=1e-15 Score=89.52 Aligned_cols=70 Identities=24% Similarity=0.432 Sum_probs=55.6
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.+.|+++ +..+........... +.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~-~~~~~~~~~~~~~~~--------~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRI-DGPLSPNRTKKLNNN--------KTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEEC-CcCCCCCceeEEcCC--------CEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999999 555443322111111 37999999999999999999999999988888876
No 37
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.65 E-value=1.6e-15 Score=89.73 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=60.1
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI 91 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 91 (158)
|+.+.|.|.+.|.|.|.+.|+++ +..+....+. ..... +.|.|.+++.+|+|.|+|.|.|..|...+.+
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~-g~~~~~~~~~~~~~~~~--------~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~ 71 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLN-GVPIEELPPDPRRRVDG--------GTLILSNVQPNDTAVYQCNASNVHGYLLANA 71 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEEC-CEECCCCCCcceEEccC--------CEEEECCCChhhCEEEEEEEEccCCeEEEeE
Confidence 67899999999999999999999 7766544321 11112 2799999999999999999999999999888
Q ss_pred EEEE
Q psy16261 92 KVYN 95 (158)
Q Consensus 92 ~l~v 95 (158)
.|.|
T Consensus 72 ~l~V 75 (76)
T cd04978 72 FVHV 75 (76)
T ss_pred EEEE
Confidence 8876
No 38
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.65 E-value=4.6e-15 Score=89.73 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=62.1
Q ss_pred CCEEEEeEEeecCCC--eeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261 15 APLTLDCHVESYPKP--ITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 15 ~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 89 (158)
+++.|.|.+.|.|.| .++|+++ +..+... .++...... ...++|.|.+++..|+|.|+|.|.|.+|...+
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~-g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLD-DFPIDLDKPNGHYRRMEVK----ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC-CeEccccCCCCcEEEEEec----ceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 468999999999988 5789999 7776532 233221111 01247999999999999999999999999999
Q ss_pred EEEEEEeccC
Q psy16261 90 VIKVYNIGYF 99 (158)
Q Consensus 90 ~~~l~v~~~~ 99 (158)
.+.|.|.++|
T Consensus 76 ~~~L~V~~~P 85 (85)
T cd05854 76 SATLVVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 9999988653
No 39
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.64 E-value=8e-15 Score=89.97 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=66.1
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+.+.|....+..|+.+.|.|.+.|.| +.+.|++.++..+....++...... ...++|.|.+++.+|+|.|+|.|.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQND----DVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCC----CCEEEEEEecCCcccCEEEEEEEE
Confidence 45667778899999999999999997 4999998536665544444433222 123479999999999999999999
Q ss_pred cCCCc-eEEEEEEE
Q psy16261 82 NTLGG-SEGVIKVY 94 (158)
Q Consensus 82 n~~g~-~~~~~~l~ 94 (158)
|..|. ..+++.|.
T Consensus 78 N~~g~~~~~sv~l~ 91 (92)
T cd04977 78 DAKGTESEATVNLK 91 (92)
T ss_pred cCCCCcceeEEEEE
Confidence 99765 46666654
No 40
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.64 E-value=4.9e-15 Score=91.51 Aligned_cols=83 Identities=24% Similarity=0.377 Sum_probs=65.1
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-----CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+... .++.+.... ..+.|.|.+++.+|+|.|+|.|.
T Consensus 9 ~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~ 82 (96)
T cd05732 9 ENQTAVELEQITLTCEAEGDPIPEITWRRA-TRNFSEGDKSLDGRIVVRGHA-----RVSSLTLKDVQLTDAGRYDCEAS 82 (96)
T ss_pred CceeEecCCcEEEEEEEeEcCCCcEEEEEC-CcccCCCCccccceEEEeCCc-----cEEEEEECcCCcCcCEEeEEEEE
Confidence 345688999999999999999999999998 6544322 233332211 23579999999999999999999
Q ss_pred cCCCceEEEEEEEE
Q psy16261 82 NTLGGSEGVIKVYN 95 (158)
Q Consensus 82 n~~g~~~~~~~l~v 95 (158)
|..|....++.|.|
T Consensus 83 N~~G~~~~s~~l~v 96 (96)
T cd05732 83 NRIGGDQQSMYLEV 96 (96)
T ss_pred eCCCCcEEEEEEeC
Confidence 99999988887754
No 41
>KOG3513|consensus
Probab=99.64 E-value=2.2e-15 Score=122.94 Aligned_cols=131 Identities=20% Similarity=0.307 Sum_probs=107.8
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCe---EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSR---YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
.++.+.+..|+++.|.|.+.|.|.|.++|++| +..+....+ +.+... .|+|.++...|+|.|+|.|+
T Consensus 337 ~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkN-g~pl~~~~r~~~~~i~~g---------~L~is~v~~~dsg~YQC~A~ 406 (1051)
T KOG3513|consen 337 KPQDTEADTGSNVTLECKASGKPNPTVKWLKN-GEPLEPAERDPRYKIDDG---------TLIISNVQESDSGVYQCIAE 406 (1051)
T ss_pred ccceeEecCCCCeEEEEEecCCCCCceEEeeC-CeecCccCCCcceEEeCC---------EEEEEecccccCeEEEeeee
Confidence 45667788999999999999999999999999 888876554 555544 59999999999999999999
Q ss_pred cCCCceEEEEEEEEeccCCC-CCc----------------------------------------------ccchhhhhhh
Q psy16261 82 NTLGGSEGVIKVYNIGYFGS-DTQ----------------------------------------------YVTDEEMQRT 114 (158)
Q Consensus 82 n~~g~~~~~~~l~v~~~~~~-~~~----------------------------------------------~~~~~~~~~~ 114 (158)
|.+|...+.+.|.|....+. ... ....+.+...
T Consensus 407 Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~ 486 (1051)
T KOG3513|consen 407 NKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNV 486 (1051)
T ss_pred cccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEeccc
Confidence 99999999999988876211 000 2234677777
Q ss_pred cccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261 115 NQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS 152 (158)
Q Consensus 115 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (158)
.+.|+|.| +|.|.|-.|.....+.|.|.+++
T Consensus 487 t~~DaG~Y-------tC~A~N~~G~a~~~~~L~Vkd~t 517 (1051)
T KOG3513|consen 487 TRSDAGKY-------TCVAENKLGKAESTGNLIVKDAT 517 (1051)
T ss_pred CcccCcEE-------EEEEEcccCccceEEEEEEecCc
Confidence 88899999 99999999999999999887765
No 42
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.64 E-value=1.9e-15 Score=88.37 Aligned_cols=70 Identities=26% Similarity=0.389 Sum_probs=57.6
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 96 (158)
+.|.|.+.|.|.|.+.|+|+ +..+....++... . +.|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~~~~~~~~-~--------~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRTKKS-G--------HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCCCCEEEcC-C--------CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 46899999999999999999 8877665544322 2 269999999999999999999999988777776653
No 43
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.64 E-value=5.1e-15 Score=88.64 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=58.3
Q ss_pred EEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeec--ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKF--SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 18 ~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
.+.|.+.|.|.|.++|+|+ +..+....+........ ......+.|.|.+++..|+|.|+|.|.|.+|.....+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHN-GAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEEC-CEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999999999999999 88887665433222110 1122345799999999999999999999999998877664
No 44
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.64 E-value=3.3e-15 Score=90.38 Aligned_cols=80 Identities=26% Similarity=0.476 Sum_probs=64.5
Q ss_pred cCceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 5 PSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
.|..+.+.+|+++.|.|.+ .|.|.|.+.|+++ +..+.. ..++.....+ .|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~-g~~~~~~~~~~~~~~~~--------~L~I~~~~~~D~G~Y~C~a~N 72 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKD-GQPLNLDNERVRIVDDG--------NLLIAEARKSDEGTYKCVATN 72 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEEC-CEECCCCCCCEEEccCC--------EEEEeECCcccCEEEEEEEEe
Confidence 4566778899999999998 7999999999999 776654 3455444433 799999999999999999999
Q ss_pred CCCceE-EEEEE
Q psy16261 83 TLGGSE-GVIKV 93 (158)
Q Consensus 83 ~~g~~~-~~~~l 93 (158)
..|... ..+.|
T Consensus 73 ~~G~~~s~~~~l 84 (86)
T cd05724 73 MVGERESAAARL 84 (86)
T ss_pred ccCceeeeeEEE
Confidence 999864 34444
No 45
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.64 E-value=2.6e-15 Score=89.89 Aligned_cols=80 Identities=20% Similarity=0.359 Sum_probs=62.8
Q ss_pred eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
.+.+..|+.+.|.|.+.|.|.|.++|+++ +..+........... .+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 74 (82)
T cd05856 3 VIARPVGSSVRLKCVASGNPRPDITWLKD-NKPLTPTEIGESRKK-------KWTLSLKNLKPEDSGKYTCHVSNRAGEI 74 (82)
T ss_pred ceeccCCCeEEEEEEeeEeCCCcEEEEEC-CcCCcCCccceecCc-------eEEEEEccCChhhCEEEEEEEEcCCccE
Confidence 34577899999999999999999999999 665543322211111 1379999999999999999999999998
Q ss_pred EEEEEEEE
Q psy16261 88 EGVIKVYN 95 (158)
Q Consensus 88 ~~~~~l~v 95 (158)
.+.+.|.|
T Consensus 75 ~~~~~v~v 82 (82)
T cd05856 75 NATYKVDV 82 (82)
T ss_pred EEEEEEeC
Confidence 88877753
No 46
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.64 E-value=2.4e-15 Score=86.65 Aligned_cols=66 Identities=29% Similarity=0.422 Sum_probs=54.6
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 96 (158)
+.|.|.+.|.|.|.+.|+|+ +..+.... . .+.|.|.++..+|+|.|+|.|.|..|..+..+.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~~~-----~--------~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKD-GKLISGKH-----S--------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEEC-CEECcccC-----C--------cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999999999999999 87764221 1 1269999999999999999999999988777776653
No 47
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.63 E-value=4.3e-15 Score=88.65 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=64.4
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
....+.+|+.+.|.|.+.+. .+.+.|+|+ +..+....++.+.. . .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~~~-~--------~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRITG-E--------EVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEEeC-C--------EEEECCCChhhCEEEEEEEeCCCCc
Confidence 45567899999999999996 578999999 88877666665542 2 6999999999999999999999998
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
....+.|.|
T Consensus 71 ~~~~~~v~V 79 (79)
T cd04973 71 DTTYFSVNV 79 (79)
T ss_pred ccEEEEEeC
Confidence 777766643
No 48
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.63 E-value=5.5e-15 Score=85.88 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=54.2
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
|+.+.|.|.+.|.|.|.+.|+|+ +..+....++... . ..|.|.++. |+|.|+|.|.|..|...+...|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~-g~~l~~~~~~~~~-~--------~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKG-GEELTKEDEMPVG-R--------NVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEEC-CEECCCccceecC-c--------cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 67899999999999999999999 7666544433221 1 258888874 7899999999999998877765
No 49
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.63 E-value=3.6e-15 Score=86.64 Aligned_cols=69 Identities=26% Similarity=0.530 Sum_probs=56.8
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.+.|+++ +..+. ..++...... .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~-~~~~~-~~~~~~~~~~--------~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKE-DGELP-KGRAEILDDK--------SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEEC-CccCC-CCcEEEeeCC--------EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 47999999999999999999 54443 3455554443 7999999999999999999999999988887754
No 50
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.63 E-value=2.2e-14 Score=89.00 Aligned_cols=86 Identities=27% Similarity=0.426 Sum_probs=67.8
Q ss_pred CceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCC-CeEEEEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCNAK 81 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~ 81 (158)
+....+.+|+.+.|.|.+.|.|.| .+.|+++ +..+... .++.+.... ......+.|.|.++..+| .|.|+|.|.
T Consensus 8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~-~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~ 85 (98)
T cd05758 8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWK-ENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAW 85 (98)
T ss_pred CCcEEEeCCCcEEEEEEEcccCCCCEeEEEEC-CEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEE
Confidence 445668999999999999999999 6999999 7766543 566665542 122334689999999955 899999999
Q ss_pred cCCCceEEEEEE
Q psy16261 82 NTLGGSEGVIKV 93 (158)
Q Consensus 82 n~~g~~~~~~~l 93 (158)
|..|.....+.|
T Consensus 86 N~~G~~~~~~~L 97 (98)
T cd05758 86 NSFGSGTAIISL 97 (98)
T ss_pred cCCCcccEEEEe
Confidence 999998887765
No 51
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.62 E-value=4.2e-15 Score=86.52 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=55.3
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.+.|+|+ +..+....++ ... +.|.|.++..+|+|.|+|.|.|..|..+...++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~-g~~l~~~~~~--~~~--------~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKN-GQLIVLNHTF--KRG--------VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEEC-CEECCCCCEE--ccC--------CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 36899999999999999999 8877654332 222 26999999999999999999999998877665554
No 52
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.62 E-value=5.9e-15 Score=86.94 Aligned_cols=70 Identities=24% Similarity=0.405 Sum_probs=56.7
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-EEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKV 93 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l 93 (158)
+.|.|.+.|.|.|.+.|+++ +..+. ...++.....+ .|.|.+++.+|+|.|+|.|.|..|.. +....|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~-~~~~~~~~~~~~~~~~~g--------~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l 71 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKD-FLPVDTTSNGRIKQLRSG--------ALQIENSEESDQGKYECVATNSAGTRYSAPANL 71 (74)
T ss_pred CEEEEEEeEecCCEEEEEEC-CEECccCCCCCEEEcCCc--------EEEECCCChhhCEEEEEEEECCCCceEcccEEE
Confidence 47999999999999999999 77665 34555554443 69999999999999999999999985 555666
Q ss_pred EE
Q psy16261 94 YN 95 (158)
Q Consensus 94 ~v 95 (158)
.|
T Consensus 72 ~v 73 (74)
T cd05738 72 YV 73 (74)
T ss_pred EE
Confidence 54
No 53
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.61 E-value=9.5e-15 Score=89.43 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=63.0
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
+.+.+.+|+.+.|.|.+.|. .|.+.|+++ +..+.. .++.+.... +.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kn-g~~l~~-~~~~~~~~~-------~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNN-GSLLVP-PRLQLSNDN-------RTLTFNNVTRSDTGHYQCEASNEVSN 80 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEEC-CEECCC-CCEEEeCCC-------CEEEECcCChhhCEEEEEEEEcCCCC
Confidence 45578899999999999999 999999999 766543 344433221 26999999999999999999999998
Q ss_pred e-EEEEEEEE
Q psy16261 87 S-EGVIKVYN 95 (158)
Q Consensus 87 ~-~~~~~l~v 95 (158)
. +..+.|.|
T Consensus 81 ~~S~~~~L~V 90 (91)
T cd05740 81 MTSDPYILNV 90 (91)
T ss_pred EEeeeEEEEe
Confidence 6 44666665
No 54
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.61 E-value=8.2e-15 Score=88.25 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCEEEEeEEeecC--CCeeEEEcCCCeeeec---CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261 15 APLTLDCHVESYP--KPITFWTHENGSLIHE---GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 15 ~~v~l~C~~~g~p--~p~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 89 (158)
+++.|.|.+.+.| .+.+.|+++ ++.+.. ..++...... ...+.|.|.+++..|+|+|+|.|+|.++..++
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~d-g~~i~~~~~~~~~~~~~~~----~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFN-GHLIDFQKDGDHFERVGGQ----DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEEC-CEECcccCCCccEEEeccC----CCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 4689999998744 778999999 887752 2354442110 01137999999999999999999999999999
Q ss_pred EEEEEEeccC
Q psy16261 90 VIKVYNIGYF 99 (158)
Q Consensus 90 ~~~l~v~~~~ 99 (158)
...|.|.++|
T Consensus 76 ~a~L~V~~pP 85 (85)
T cd05853 76 AADLIVRGPP 85 (85)
T ss_pred EEEEEEecCC
Confidence 9999998764
No 55
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=1.1e-14 Score=88.00 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=61.1
Q ss_pred CCEEEEeEEeecCCC--eeEEEcCCCeeeecC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261 15 APLTLDCHVESYPKP--ITFWTHENGSLIHEG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 15 ~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 89 (158)
+.+.|.|.+.|.|.| .+.|+++ +..+... .++...... ...+.|.|.+++..|+|.|+|.|.|..|....
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~-g~~i~~~~~~~~~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 75 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFN-GVPIDFDKDGGHYRRVGGK----DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEEC-CeEeeccCCCccEEEEecc----cccceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence 468999999999988 5689999 7776532 122111110 01247999999999999999999999999999
Q ss_pred EEEEEEeccC
Q psy16261 90 VIKVYNIGYF 99 (158)
Q Consensus 90 ~~~l~v~~~~ 99 (158)
.+.|.|.++|
T Consensus 76 ~~~l~V~~pP 85 (85)
T cd04970 76 SADLIVRGPP 85 (85)
T ss_pred EEEEEEECCC
Confidence 9999988753
No 56
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.60 E-value=1.1e-14 Score=86.46 Aligned_cols=72 Identities=28% Similarity=0.570 Sum_probs=55.9
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE--EEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE--GVIKV 93 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l 93 (158)
+.|.|.+.|.|.|.+.|+|+ +..+... .++.+.... +.|.|.++..+|+|.|+|.|.|.+|... ..++|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRD-GTPLSDGQGNYSVSSKE-------RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEeeecCCCcEEEEEC-CEECCCCCccEEEeCCC-------CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 47999999999999999999 7776544 233333221 2699999999999999999999999874 35666
Q ss_pred EEe
Q psy16261 94 YNI 96 (158)
Q Consensus 94 ~v~ 96 (158)
.|.
T Consensus 73 ~v~ 75 (77)
T cd05760 73 SII 75 (77)
T ss_pred EEe
Confidence 553
No 57
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.60 E-value=7.6e-15 Score=85.59 Aligned_cols=70 Identities=31% Similarity=0.513 Sum_probs=55.3
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v 95 (158)
+.|.|.+.|.|.|.+.|+++ +..+... +...... .+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~-~~~~~~~-~~~~~~~-------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKI-GGELPAD-RTKFENF-------NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEEC-CeECCCC-ceeEecC-------CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999 5544332 2222111 136999999999999999999999999988888766
No 58
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.60 E-value=1.8e-14 Score=89.23 Aligned_cols=90 Identities=28% Similarity=0.443 Sum_probs=63.0
Q ss_pred eeecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-----CeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 76 (158)
|...+..+.+.+|+.+.|.|.+.|.|.|.+.|+|+ +..+... .+......+ .. ....+.+..+..+|+|.|
T Consensus 4 i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 4 IVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKN-GQPLETDKDDPRSHRIVLPSG-SL--FFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred EEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEEC-CEECccccCCCCcceEEecCC-cE--EEEEeeccCCCcCcCEEE
Confidence 44566778899999999999999999999999999 7766541 111111111 00 011222333478999999
Q ss_pred EEEEEcCCCc-eEEEEEEEE
Q psy16261 77 KCNAKNTLGG-SEGVIKVYN 95 (158)
Q Consensus 77 ~C~a~n~~g~-~~~~~~l~v 95 (158)
+|.|.|..|. .+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 9999999998 466677665
No 59
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.60 E-value=1.9e-14 Score=87.94 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=58.4
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCC---CeeeecCC--eEEEEEeec--ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHEN---GSLIHEGS--RYHMWTEKF--SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
|+.+.|.|.+.|.|.|.+.|++.+ +..+.... ...+....+ ......+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999841 33333222 111111110 00001247999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
....+.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 988888876
No 60
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.60 E-value=9.6e-15 Score=86.23 Aligned_cols=72 Identities=25% Similarity=0.477 Sum_probs=55.7
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
+.|.|.+.|.|.|.++|+|++...+.. ..++...... +.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~-------~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~ 73 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPED-------DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT 73 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCC-------CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence 478999999999999999993322222 2344333222 2699999999999999999999999998888887
Q ss_pred E
Q psy16261 95 N 95 (158)
Q Consensus 95 v 95 (158)
|
T Consensus 74 V 74 (75)
T cd05763 74 V 74 (75)
T ss_pred E
Confidence 6
No 61
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.59 E-value=3e-14 Score=87.74 Aligned_cols=77 Identities=25% Similarity=0.372 Sum_probs=57.5
Q ss_pred ecCceEEEe---cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEE-EeecccceEEEEEEEcCCC-CCCCeEEEE
Q psy16261 4 IPSQLIGAR---LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMW-TEKFSSYKFYMRLYIGSLS-KSDFGTYKC 78 (158)
Q Consensus 4 ~~~~~~~~~---~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C 78 (158)
..|..+.+. +|+.+.|.|.+.|.|.|.++|+++ +..+......... ..+ .|.|.++. ..|+|.|+|
T Consensus 6 ~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~g--------~L~i~~~~~~~D~G~Y~C 76 (94)
T cd05848 6 QEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRN-GTEIDTESDYRYSLIDG--------NLIISNPSEVKDSGRYQC 76 (94)
T ss_pred ECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEEC-CeECccCCCceEEeeCC--------eEEEccCCccCcCEEEEE
Confidence 344444443 478999999999999999999999 7777543322222 222 68898875 699999999
Q ss_pred EEEcCCCceEE
Q psy16261 79 NAKNTLGGSEG 89 (158)
Q Consensus 79 ~a~n~~g~~~~ 89 (158)
.|.|..|....
T Consensus 77 ~A~N~~G~~~S 87 (94)
T cd05848 77 LATNSIGSILS 87 (94)
T ss_pred EEEcCCCeEEe
Confidence 99999998743
No 62
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.59 E-value=2.5e-14 Score=88.22 Aligned_cols=83 Identities=30% Similarity=0.478 Sum_probs=62.9
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCC-----CCCCCeE
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSL-----SKSDFGT 75 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v-----~~~d~G~ 75 (158)
...|....+.+|+++.|.|.+.|.|.|.+.|+|+ +..+.... ++.....+ .+.|.++ .+.|.|.
T Consensus 3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~--------~l~i~~v~~~~~~~~D~G~ 73 (95)
T cd05722 3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKD-GVLLNLVSDERRQQLPNG--------SLLITSVVHSKHNKPDEGF 73 (95)
T ss_pred EECCCCeEEcCCCCEEEeeecccCCCCEEEEEEC-CeECccccCcceEEccCC--------eEEEeeeeccCCCCCcCEE
Confidence 3456667788999999999999999999999999 77775443 23333332 4556655 6899999
Q ss_pred EEEEEEcC-CCce-EEEEEEE
Q psy16261 76 YKCNAKNT-LGGS-EGVIKVY 94 (158)
Q Consensus 76 Y~C~a~n~-~g~~-~~~~~l~ 94 (158)
|+|.|.|. .|.. +..+.|.
T Consensus 74 Y~C~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 74 YQCVAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEEEEECCccCcEEEeeeEEe
Confidence 99999999 9987 4456654
No 63
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.58 E-value=5.1e-14 Score=86.53 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=58.5
Q ss_pred cCceEEEecC---CCEEEEeEEeecCCCeeEEEcCCCeeeec-CCeEEEEEeecccceEEEEEEEcCCC-CCCCeEEEEE
Q psy16261 5 PSQLIGARLA---APLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTYKCN 79 (158)
Q Consensus 5 ~~~~~~~~~g---~~v~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y~C~ 79 (158)
.|..+.+.++ ..+.|.|.+.|.|.|.++|+|+ +..+.. ..++.+. .+ .|.|.++. ..|+|.|+|.
T Consensus 7 ~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~-~~~i~~~~~~~~~~-~g--------~L~I~~~~~~~D~G~Y~C~ 76 (93)
T cd05849 7 QPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKN-NLDIDLTNDRYSMV-GG--------NLVINNPDKYKDAGRYVCI 76 (93)
T ss_pred CCCCEEecCCccCCeEEEeCcCccCCCCEEEEEEC-CEEccCCCCeEEEE-CC--------EEEECcCCcCCCCEEEEEE
Confidence 4444444443 4799999999999999999999 766643 3444332 23 69999985 6899999999
Q ss_pred EEcCCCceEE-EEEE
Q psy16261 80 AKNTLGGSEG-VIKV 93 (158)
Q Consensus 80 a~n~~g~~~~-~~~l 93 (158)
|.|..|.... .+.|
T Consensus 77 A~N~~G~~~s~~a~l 91 (93)
T cd05849 77 VSNIYGKVRSREATL 91 (93)
T ss_pred EEeCcceEEEccEEE
Confidence 9999998744 3443
No 64
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.57 E-value=3.7e-14 Score=86.68 Aligned_cols=82 Identities=22% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCC---CeeeecC--CeEEEEEeec-ccc-eEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHEN---GSLIHEG--SRYHMWTEKF-SSY-KFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~---~~~~~~~--~~~~~~~~~~-~~~-~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
|+.+.|.|.+.|.|.|.++|+|++ +..+... .......... ..+ .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999861 2222211 1111111100 000 01126999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
..+++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 988888876
No 65
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.57 E-value=1e-13 Score=85.33 Aligned_cols=81 Identities=23% Similarity=0.335 Sum_probs=60.4
Q ss_pred eecCceEEEecC---CCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCC-CCCCeEE
Q psy16261 3 VIPSQLIGARLA---APLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLS-KSDFGTY 76 (158)
Q Consensus 3 ~~~~~~~~~~~g---~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~-~~d~G~Y 76 (158)
...|..+.+.+| +.+.|.|.+.|.|.|.++|+++ +..+... .++.+. .+ .|.|.++. ..|.|.|
T Consensus 5 ~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~-g~~l~~~~~~~~~~~-~g--------~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 5 EEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMN-GTEIKFAPESRYTLV-AG--------NLVINNPQKARDAGSY 74 (94)
T ss_pred EECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEEC-CEECccCCCceEEEE-CC--------eEEEccCCccCcCEEE
Confidence 345666656555 5799999999999999999999 7776533 344332 22 68898865 5999999
Q ss_pred EEEEEcCCCceEE-EEEE
Q psy16261 77 KCNAKNTLGGSEG-VIKV 93 (158)
Q Consensus 77 ~C~a~n~~g~~~~-~~~l 93 (158)
+|.|.|..|.... .+.|
T Consensus 75 ~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 75 QCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEcCcCcEEEEEEEE
Confidence 9999999998754 4443
No 66
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.55 E-value=7.3e-14 Score=82.61 Aligned_cols=72 Identities=28% Similarity=0.470 Sum_probs=58.6
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
+.|.|.+.|.|.|.+.|+|+ +..+.... ++.....+ +.|.|.++..+|.|.|+|.+.|..|.....+.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~-~~~l~~~~~~~~~~~~~~-------~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKN-GMDITPKLSKQLTLIANG-------SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF 72 (76)
T ss_pred CEeEeEeeecCCCEEEEEEC-CEECCCCCCccEEEeCCC-------CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence 46899999999999999999 77665442 33332221 2699999999999999999999999999999887
Q ss_pred Ee
Q psy16261 95 NI 96 (158)
Q Consensus 95 v~ 96 (158)
|.
T Consensus 73 V~ 74 (76)
T cd05736 73 VE 74 (76)
T ss_pred EE
Confidence 75
No 67
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=6.4e-14 Score=83.74 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=56.1
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCC--Ceee-e-cC---CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHEN--GSLI-H-EG---SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~--~~~~-~-~~---~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
|+.+.|.|.+.|.|.|.+.|+|+. +..+ . .. .++.... .+.|.|.+++.+|+|.|.|.|.|..|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 72 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN--------IGQLVIYNAQPQDAGLYTCTARNSGGL 72 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc--------ccEEEEccCCcccCEEEEEEEecCCce
Confidence 688999999999999999999972 1111 1 11 1111111 137999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
....+.|.|
T Consensus 73 ~~~~~~l~v 81 (81)
T cd05765 73 LRANFPLSV 81 (81)
T ss_pred EEEEEEEeC
Confidence 988888764
No 68
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.54 E-value=7.1e-14 Score=83.32 Aligned_cols=70 Identities=27% Similarity=0.564 Sum_probs=52.8
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-E
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-E 88 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~ 88 (158)
+.|.|.+.|.|.|.+.|+++++.... ...++.....+ +|.|.++..+|+|.|.|.|.|..|.. +
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~--------~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG--------SLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCC--------eEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 47999999999999999997332111 23344443333 79999999999999999999999987 4
Q ss_pred EEEEEE
Q psy16261 89 GVIKVY 94 (158)
Q Consensus 89 ~~~~l~ 94 (158)
..+.|.
T Consensus 73 ~~~~l~ 78 (79)
T cd05734 73 KSMVLT 78 (79)
T ss_pred eEEEEe
Confidence 455554
No 69
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.54 E-value=7.2e-14 Score=83.60 Aligned_cols=73 Identities=19% Similarity=0.401 Sum_probs=56.7
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+..|+.+.+.+|+.+.|.|.+.|.|.| .+.|.++ +..+... ... . .+.|.|..+ .|.|.|+|.|.
T Consensus 2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~-g~~l~~~--~~~-~--------~s~L~i~~~--~d~g~Y~C~A~ 67 (81)
T cd05749 2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQG-GSPLGDP--PAP-S--------PSVLNVPGL--NETSKFSCEAH 67 (81)
T ss_pred cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEEC-CEECCCC--CCC-C--------CCEEEEccc--cCCeEEEEEEE
Confidence 345677889999999999999999999 7999999 7766431 111 1 126888877 47899999999
Q ss_pred cCCCceEE
Q psy16261 82 NTLGGSEG 89 (158)
Q Consensus 82 n~~g~~~~ 89 (158)
|.+|....
T Consensus 68 N~~G~~~s 75 (81)
T cd05749 68 NAKGVTTS 75 (81)
T ss_pred eccCcEEe
Confidence 99997643
No 70
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=9.3e-14 Score=81.14 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=52.0
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
+.|.|.+.|.|.|.+.|+|+ +..+... .++.. ... +|.|.+++.+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~~~~~~~~-~~~--------~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKD-GLPAAEKCSRYHV-DGY--------SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEEC-CEECCCCCcEEEe-CCC--------EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 36899999999999999999 7776554 34332 112 69999999999999999999986665444433
No 71
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.53 E-value=5.2e-13 Score=82.45 Aligned_cols=88 Identities=20% Similarity=0.384 Sum_probs=69.2
Q ss_pred ecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCCCC-CeEEEEE
Q psy16261 4 IPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCN 79 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~ 79 (158)
.......+.+|+.+.|.|.+.+.|.| .+.|.+. +..+.. ..++.+.... ......+.|+|.++...| .|.|.|.
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~-~~~i~~~~~~r~~I~~~~-~~~g~~S~L~I~~~~~~d~~g~Y~C~ 83 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWK-ENVLESGTSERYTVERTS-TGSGVLSTLTINNIMEADFQTHYNCT 83 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEc-cccccCCCCCCEEEEEEc-cCCCcEEEEEECCCccccCCcEEEEE
Confidence 45566778999999999999998887 5789888 656544 3677776543 223346789999998877 6899999
Q ss_pred EEcCCCceEEEEEE
Q psy16261 80 AKNTLGGSEGVIKV 93 (158)
Q Consensus 80 a~n~~g~~~~~~~l 93 (158)
|.|.+|.....++|
T Consensus 84 a~N~~G~d~~~i~L 97 (98)
T cd05898 84 AWNSFGSGTAIIQL 97 (98)
T ss_pred EEeCCccceEEEEe
Confidence 99999999888776
No 72
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.53 E-value=2e-13 Score=82.28 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=57.7
Q ss_pred CCCEEEEeEEeec--CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261 14 AAPLTLDCHVESY--PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI 91 (158)
Q Consensus 14 g~~v~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 91 (158)
|+.+.|.|.+.+. |.|.+.|.++ +..+...................+.|.|.+++.+|+|.|.|.|.|..|..+.+.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYP-GKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecC-CcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 6889999999999 7889999987 543322111000000001122346899999999999999999999999988887
Q ss_pred EEEE
Q psy16261 92 KVYN 95 (158)
Q Consensus 92 ~l~v 95 (158)
.|.|
T Consensus 80 ~v~v 83 (84)
T cd05742 80 KVNI 83 (84)
T ss_pred EEEE
Confidence 7754
No 73
>KOG3513|consensus
Probab=99.53 E-value=9.3e-14 Score=113.60 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=96.6
Q ss_pred CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
++......|+.+.|.|.+.|.|.|.+.|.|.++..+. .+......+ ..|.|.+++.+|+|.|+|.|+|..|
T Consensus 248 p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~--~r~~~~~~~-------~vL~I~nv~~~D~G~Y~C~AeN~~G 318 (1051)
T KOG3513|consen 248 PETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP--RRATYSNYG-------KVLKIPNVQYEDAGEYECIAENSRG 318 (1051)
T ss_pred CCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC--cceeeeccc-------cEEEecccCcCCCeEEEEEEecccc
Confidence 4456678999999999999999999999999665443 223232222 2799999999999999999999999
Q ss_pred ceEEEEEEEEeccCCC------------------------CCc----------------------ccchhhhhhhccccc
Q psy16261 86 GSEGVIKVYNIGYFGS------------------------DTQ----------------------YVTDEEMQRTNQIAR 119 (158)
Q Consensus 86 ~~~~~~~l~v~~~~~~------------------------~~~----------------------~~~~~~~~~~~~~~~ 119 (158)
.......|.|...|.- |.+ ....+.+......+.
T Consensus 319 ~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~ds 398 (1051)
T KOG3513|consen 319 SATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDS 398 (1051)
T ss_pred cceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccC
Confidence 8888888887765411 000 011123333445677
Q ss_pred ccccCcccceEeeeccCCceEEEEccccCCCC
Q psy16261 120 SKWGSERTNQIARSKWGSGYRYTSGPIRLPDP 151 (158)
Q Consensus 120 ~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 151 (158)
|+| -|.|.|.-|+.+.+++|+|-+.
T Consensus 399 g~Y-------QC~A~Nk~G~i~anA~L~V~a~ 423 (1051)
T KOG3513|consen 399 GVY-------QCIAENKYGTIYANAELKVLAS 423 (1051)
T ss_pred eEE-------EeeeecccceEeeeeEEEEEcc
Confidence 888 9999999999999999996433
No 74
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.51 E-value=1.6e-13 Score=84.50 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=61.7
Q ss_pred ceEEEecCCCEEEEeEEee-----cCCCeeEEEcCCCeeeec----CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261 7 QLIGARLAAPLTLDCHVES-----YPKPITFWTHENGSLIHE----GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g-----~p~p~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 77 (158)
....+.+|+.+.|.|.+.+ .|.|.+.|+|+ +..+.. ..++... .. .|.|..+..+|+|.|+
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~-~~~~~~~~~~~~r~~~~-~~--------~L~I~~~~~~DsG~Y~ 76 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKS-DGKTPIPTEERSRMHQQ-KD--------LLWFLPAALEDSGLYT 76 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEc-CCCCcccccccceeeec-CC--------eEEEccCCcccCeEEE
Confidence 3455789999999999999 68899999999 544321 2233221 22 6999999999999999
Q ss_pred EEEEcCCCceEEEEEEEE
Q psy16261 78 CNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 78 C~a~n~~g~~~~~~~l~v 95 (158)
|.+.|..|.....+.|.|
T Consensus 77 C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 77 CVVRNSTYCMKVSISLTV 94 (94)
T ss_pred EEEcCCCccEEEEEEEEC
Confidence 999999999888887754
No 75
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.51 E-value=1.7e-13 Score=80.70 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=54.3
Q ss_pred EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEE---EEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEE
Q psy16261 17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYH---MWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK 92 (158)
Q Consensus 17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 92 (158)
+.|.|.+.| .|.|.+.|+++ +..+....+.. +.... ..+.|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~-g~~l~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKD-GKELNRKNKPRNIKIRNKK-----KNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcC-CeeccccCCcceEEEEecC-----ceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 99999999999 77776543322 21111 2347999999999999999999999998776654
No 76
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.49 E-value=8.2e-13 Score=79.41 Aligned_cols=83 Identities=24% Similarity=0.408 Sum_probs=64.0
Q ss_pred eEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 8 LIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
.+.+..|+.+.|.|.+.+.|.+.+.|+++ +..+.....+...... .....|.|.++..+|.|.|.|.+.|..|..
T Consensus 3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 3 LHAVPAGSTVRLKCPASGNPRPTITWLKD-GKPFKKEHRIGGYKVR----KKKWTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred eeEecCCCcEEEEEEcCCCCCCeEEEEEC-CEECcccCceeEEEcc----CcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence 35677899999999999999999999999 7666544333222111 112369999999999999999999999998
Q ss_pred EEEEEEEE
Q psy16261 88 EGVIKVYN 95 (158)
Q Consensus 88 ~~~~~l~v 95 (158)
..++.|.|
T Consensus 78 ~~~~~l~v 85 (85)
T cd05729 78 NHTYKVDV 85 (85)
T ss_pred EEEEEEeC
Confidence 88877753
No 77
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.48 E-value=1.3e-12 Score=80.46 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=58.8
Q ss_pred CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 78 (158)
.+.+.+.+|+++.|.|.+.+.|.|.+.|++++...+. ...|+.+..... ....|.|.+++.+|.|.|+|
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~L~I~nV~~~D~G~YtC 79 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP----TELIISISNVQLSDEGEYTC 79 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC----ceEEEEECCCCcccCEEEEE
Confidence 3556789999999999999999999999998333222 223444332221 12379999999999999999
Q ss_pred EEEcCCCceEEEEEE
Q psy16261 79 NAKNTLGGSEGVIKV 93 (158)
Q Consensus 79 ~a~n~~g~~~~~~~l 93 (158)
.+... -..++..+|
T Consensus 80 ~~~t~-~~~~~~~~~ 93 (95)
T cd05882 80 SIFTM-PVRTAKATV 93 (95)
T ss_pred EEEee-ccccEEEEE
Confidence 99872 233444444
No 78
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.47 E-value=9.2e-13 Score=80.24 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=62.1
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC----CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA 80 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 80 (158)
++..+.+.+|+.+.|.|.+.+ |.+.+.|+++ +..+... .++..... .|.|.+++.+|+|.|.|.|
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~-~~~~~~~~~~~~~~~~~~~---------~L~I~~~~~~D~G~Y~C~a 70 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQ-GGPLQRKEEPEERLLVTED---------GLLIRSVSPADAGVYTCQS 70 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEEC-CcccccccCcCceEEEcCC---------CEEEccCCHHHCEEEEEEE
Confidence 456677899999999999987 8889999999 6555433 23333222 4999999999999999999
Q ss_pred EcCC-CceEEEEEEEEec
Q psy16261 81 KNTL-GGSEGVIKVYNIG 97 (158)
Q Consensus 81 ~n~~-g~~~~~~~l~v~~ 97 (158)
.+.. +...+++.|.|..
T Consensus 71 ~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 71 VEHGFKQTLATYSLNVLE 88 (89)
T ss_pred ecCccceeEeEEEEEEec
Confidence 8764 4446677777653
No 79
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.46 E-value=2.8e-13 Score=80.37 Aligned_cols=65 Identities=26% Similarity=0.515 Sum_probs=48.9
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCC----CCCeEEEEEEEcCCCceEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSK----SDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~----~d~G~Y~C~a~n~~g~~~~ 89 (158)
+.|.|.+.|.|.|.++|+|+ +..+... .++...... +.|.|..+.. +|+|.|+|.|.|.+|....
T Consensus 1 i~l~C~~~G~P~P~v~W~k~-g~~l~~~~~~~~~~~~~~-------g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRN-GTHFDPEKDPRVTMKPDS-------GTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEEC-CeECCCCCCCCEEEeCCC-------CEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47899999999999999999 7766433 333332211 2688888754 6899999999999997643
No 80
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.46 E-value=8.9e-13 Score=78.19 Aligned_cols=65 Identities=26% Similarity=0.518 Sum_probs=48.4
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCC----CCCCeEEEEEEEcCCCceEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLS----KSDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~----~~d~G~Y~C~a~n~~g~~~~ 89 (158)
+.|.|.+.|.|.|.++|+++ +..+. ...++.+.... ++|.|..+. ..|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~-g~~~~~~~~~~~~~~~~~-------~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRN-GKFFNVAKDPRVSMRRRS-------GTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEEC-CEEccCcCCCcEEEeCCC-------ceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 47999999999999999999 77653 33444432211 268888764 24699999999999997744
No 81
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.45 E-value=1.7e-12 Score=78.52 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=56.6
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.|+...+..|+++.|.|.+.+ +.+.+.|+++ +..+..+ .++.+. .+ .|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~n-g~~i~~~~~r~~~~-~~--------~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFD-GKVLTPESAKYLLY-RD--------GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEEC-CEECCCCCceEEEE-CC--------cEEEeCCCHHHCEEEEEEEEec
Confidence 466778999999999999864 6789999999 8877665 455443 33 5999999999999999999886
Q ss_pred C
Q psy16261 84 L 84 (158)
Q Consensus 84 ~ 84 (158)
.
T Consensus 71 ~ 71 (87)
T cd05873 71 S 71 (87)
T ss_pred c
Confidence 3
No 82
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.45 E-value=2.5e-12 Score=79.26 Aligned_cols=85 Identities=15% Similarity=0.235 Sum_probs=60.5
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeee-------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 77 (158)
.++.+.+.+|+++.|.|.+.+.|.+.+.|++.+...+ ...+|+....... ...+|.|.+++.+|+|.|.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~----~~~sL~I~~v~~~DsG~Y~ 78 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW----HELSISISDVSLSDEGQYT 78 (95)
T ss_pred ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCC----CcEEEEECcCCcccCEEEE
Confidence 4567889999999999999999999999987522222 1234554422211 1237999999999999999
Q ss_pred EEEEcCCCceEEEEEEE
Q psy16261 78 CNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 78 C~a~n~~g~~~~~~~l~ 94 (158)
|.+.+.. .......|.
T Consensus 79 C~~~t~~-~~~~~~~l~ 94 (95)
T cd07701 79 CSLFTMP-VKTSKAYLT 94 (95)
T ss_pred EEeEeec-CccEEEEEE
Confidence 9999853 335555554
No 83
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.44 E-value=8.9e-13 Score=78.32 Aligned_cols=66 Identities=21% Similarity=0.429 Sum_probs=54.6
Q ss_pred CeeecCceEEEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261 1 MIVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79 (158)
Q Consensus 1 ~i~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 79 (158)
+|++.|+...+.+|+++.|.|.+.+.|.+ .+.|+++ +..+... . ..|.|.++ .+|+|.|+|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kn-g~~l~~~-------~--------~~l~i~~~-~~dsG~Y~C~ 64 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHN-GKLLETT-------T--------NSYRIRAA-NNDSGEYRCQ 64 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEEC-CEEeecc-------C--------CeEEEeec-ccCCEEeEEE
Confidence 36778888889999999999999998864 7999999 7765221 1 16889999 9999999999
Q ss_pred EEcC
Q psy16261 80 AKNT 83 (158)
Q Consensus 80 a~n~ 83 (158)
|.|.
T Consensus 65 a~~~ 68 (78)
T cd05752 65 TQGS 68 (78)
T ss_pred CCCC
Confidence 9986
No 84
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.44 E-value=7.6e-13 Score=78.49 Aligned_cols=65 Identities=23% Similarity=0.476 Sum_probs=47.8
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCC----CCCeEEEEEEEcCCCceEE
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSK----SDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~----~d~G~Y~C~a~n~~g~~~~ 89 (158)
+.|.|.+.|.|.|.++|+++ +..+... .++...... ++|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~~~-------g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRN-GTHFDIDKDPKVTMKPNT-------GTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEEC-CeECCCcCCCCEEEeCCC-------ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 47999999999999999999 7765322 333332221 2677777654 3789999999999998754
No 85
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.44 E-value=8.2e-12 Score=75.25 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=55.5
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecC-Ce-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC--ceEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEG-SR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG--GSEG 89 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g--~~~~ 89 (158)
|+.+.|.|.+.+.|.+.+.|.+. ++..... .. ..... +.....+.|.|.+++.+|+|.|.|.|.|..+ ....
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~---~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~ 76 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYP-GKDIGKGIPEVEEVKV---PATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFK 76 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEEC-CccCCCCceEEEEEec---CCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeE
Confidence 78899999999999999999987 4322111 00 00100 1122346899999999999999999999876 4566
Q ss_pred EEEEEEe
Q psy16261 90 VIKVYNI 96 (158)
Q Consensus 90 ~~~l~v~ 96 (158)
++.|.|.
T Consensus 77 sv~i~V~ 83 (84)
T cd05861 77 KVNITVH 83 (84)
T ss_pred EEEEEEe
Confidence 6666653
No 86
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.43 E-value=1.3e-12 Score=78.93 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=61.4
Q ss_pred ecCceEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 4 IPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
.+|..+.+.+|+.+.|.|.+.+ .|.+.+.|+++ +..+... . .... +.|.|.+++.+|+|.|.|.|.|
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~-~~~~~~~--~-~~~~--------~~L~I~~v~~~DsG~Y~C~a~n 73 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRV-GGGLPSR--A-MDFN--------GILTIRNVQLSDAGTYVCTGSN 73 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEEC-CCcCCCc--c-cccC--------CEEEECCCCHHHCEEEEEEEec
Confidence 3566778899999999999975 68889999999 5433221 1 1111 2799999999999999999999
Q ss_pred CCCceEEEEEE
Q psy16261 83 TLGGSEGVIKV 93 (158)
Q Consensus 83 ~~g~~~~~~~l 93 (158)
..|...+.+.|
T Consensus 74 ~~g~~~~~~~l 84 (85)
T cd05754 74 MLDTDEATATL 84 (85)
T ss_pred cCCeEeEEEEE
Confidence 99998887765
No 87
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.43 E-value=2.5e-12 Score=78.61 Aligned_cols=65 Identities=32% Similarity=0.589 Sum_probs=51.1
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeec--CCeEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEEEEcCCCceE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCNAKNTLGGSE 88 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~n~~g~~~ 88 (158)
++.+.|.|.+.|.|.|.++|+++ +..+.. ..++... .+ .|.|.++.. +|.|.|+|.|.|..|...
T Consensus 19 ~~~~~l~C~~~g~p~p~i~W~k~-~~~l~~~~~~~~~~~-~~--------~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 19 EGKVSLNCRARGSPPPTYRWLMN-GTEIDDEPDSRYSLV-GG--------NLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCEEEEEEeeeEcCCCEEEEEEC-CEECCCCCCCCEEEE-CC--------EEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 45799999999999999999999 776633 2333332 22 688988874 899999999999999764
No 88
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.40 E-value=3.5e-12 Score=75.35 Aligned_cols=70 Identities=29% Similarity=0.437 Sum_probs=52.0
Q ss_pred EEEEeEEee-cCCCeeEEEcCCCeeeecC----CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEE
Q psy16261 17 LTLDCHVES-YPKPITFWTHENGSLIHEG----SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVI 91 (158)
Q Consensus 17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 91 (158)
+.|.|.+.+ .|.+.+.|+++ ++.+... .++...... ..+.|.|.++..+|+|.|+|.+.|..|....++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~-g~~i~~~~~~~~~~~~~~~~-----~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKN-GKEIGAKNKPDNKIKIRKKK-----KSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEEC-CcccccCCCCCceEEEEeCC-----cEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 479999875 67789999999 7766432 222222111 124799999999999999999999999887765
Q ss_pred E
Q psy16261 92 K 92 (158)
Q Consensus 92 ~ 92 (158)
.
T Consensus 75 ~ 75 (76)
T cd05895 75 N 75 (76)
T ss_pred e
Confidence 4
No 89
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.40 E-value=1.2e-12 Score=80.15 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=60.3
Q ss_pred CceEEEecCCCEEEEeE-EeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEEEcC
Q psy16261 6 SQLIGARLAAPLTLDCH-VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAKNT 83 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~ 83 (158)
.+.+.+.+|+.+.|.|. ..|.|.|.+.|++++...+..+.|+.+...+ .|.|.+++..|+| .|.|.|.|.
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G--------nL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG--------NLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc--------eEEEEEEehhhCCCCeEEEEEcc
Confidence 45678999999999997 6999999999998844445556777666555 8999999999999 799999998
Q ss_pred CCc
Q psy16261 84 LGG 86 (158)
Q Consensus 84 ~g~ 86 (158)
...
T Consensus 82 ~~~ 84 (95)
T cd05845 82 GLR 84 (95)
T ss_pred ccc
Confidence 643
No 90
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.39 E-value=4.9e-12 Score=77.47 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=59.1
Q ss_pred eEEEecCCCEEEEeEEeec-----CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 8 LIGARLAAPLTLDCHVESY-----PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
...+.+|+...|.|...+. |.|.+.|+|+ +..+....+.. .... .|.|.++..+|+|.|+|.+.|
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~-~~~i~~~~~~~-~~~~--------~L~I~~v~~~DsG~YtC~~~n 73 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKD-CKLLEGDRKRF-VKGS--------KLLIQNVTEEDAGNYTCKLTF 73 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeEC-CEECCCCccEE-ecCC--------EEEEeeCChhhCEEEEEEEEe
Confidence 3457889999999987543 5779999999 77776544332 2333 799999999999999999999
Q ss_pred CCCceEEEEEEE
Q psy16261 83 TLGGSEGVIKVY 94 (158)
Q Consensus 83 ~~g~~~~~~~l~ 94 (158)
..+.....++..
T Consensus 74 ~~~~~~~~~t~t 85 (92)
T cd05757 74 THNGKQYNVTRT 85 (92)
T ss_pred cCCCEEEEEEEE
Confidence 988876554443
No 91
>KOG4194|consensus
Probab=99.37 E-value=5.2e-12 Score=98.23 Aligned_cols=93 Identities=19% Similarity=0.345 Sum_probs=77.5
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC--CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
.|..+....|+.+.|.|.+.|.|.|+|.|.|++|..++.. .|+++..+++ .+.|.+++.+|.|.|+|.|.|
T Consensus 618 tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd-------~f~Itnvk~eD~GiYtC~A~n 690 (873)
T KOG4194|consen 618 TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDD-------VFFITNVKIEDQGIYTCTAQN 690 (873)
T ss_pred CcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCC-------EEEEecccccccceeEEeeec
Confidence 3566778899999999999999999999999977656543 5666666552 588999999999999999999
Q ss_pred CCCceEEEEEEEEeccCCCCCc
Q psy16261 83 TLGGSEGVIKVYNIGYFGSDTQ 104 (158)
Q Consensus 83 ~~g~~~~~~~l~v~~~~~~~~~ 104 (158)
.+|...+..+|.|.+.|....+
T Consensus 691 ~AG~isanAtL~V~e~p~f~~P 712 (873)
T KOG4194|consen 691 VAGQISANATLTVLETPSFSIP 712 (873)
T ss_pred cccceeeceEEEEecCCccccc
Confidence 9999999999999887654443
No 92
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.33 E-value=5.3e-11 Score=73.28 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=58.4
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 79 (158)
+.+.+.+|+++.|.|.+.+.+.+.+.|++.++..+. ...|+.+...... ...|.|.+++.+|+|.|.|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSAN----ELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCC----eeEEEEccCCcccCEEEEEE
Confidence 456789999999999999988899999875232221 1245554322111 23699999999999999999
Q ss_pred EEcCCCceEEEEEEE
Q psy16261 80 AKNTLGGSEGVIKVY 94 (158)
Q Consensus 80 a~n~~g~~~~~~~l~ 94 (158)
+.+... ..+.+.|.
T Consensus 81 ~~~~~~-~~~~~~~~ 94 (95)
T cd05717 81 LYTMPV-QTAKATVT 94 (95)
T ss_pred EecCCC-ceEEEEEE
Confidence 998653 35555554
No 93
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.32 E-value=1.5e-10 Score=71.37 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=70.5
Q ss_pred CceEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
...+.+.+|+++.|.|.+.++|.|. +.|.++ +..+.............+.++..+.|.+..++.+|.|.|+|.|.|..
T Consensus 10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~-~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~ 88 (101)
T cd05860 10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYM-NRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSD 88 (101)
T ss_pred CceEEEECCCCEEEEEEEEeCCCCeeeEEEcC-CcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCC
Confidence 3456799999999999999999997 999998 65443322212232222456678899999999999999999999999
Q ss_pred CceEEEEEEEEe
Q psy16261 85 GGSEGVIKVYNI 96 (158)
Q Consensus 85 g~~~~~~~l~v~ 96 (158)
+..+.++.|.|.
T Consensus 89 ~~~s~tF~l~v~ 100 (101)
T cd05860 89 ASASVTFNVYVN 100 (101)
T ss_pred CeEEEEEEEEEe
Confidence 988888888764
No 94
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.28 E-value=8.5e-11 Score=71.85 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=57.8
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCC-Ceee----ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHEN-GSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
..+...+|+.+.|.|.. +.|.|.++|++.+ +... ....++.... +.|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~---------~~L~I~~~~~~DsG~Y~C~a~ 73 (91)
T cd05871 4 KVVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTE---------RGLLLRSLQRSDAGVYTCTAV 73 (91)
T ss_pred eEEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEec---------CeEEEeeCChhHCEEEEEEEE
Confidence 34568899999999997 5788999999842 2111 1223443322 259999999999999999998
Q ss_pred -cCCCceEEEEEEEEe
Q psy16261 82 -NTLGGSEGVIKVYNI 96 (158)
Q Consensus 82 -n~~g~~~~~~~l~v~ 96 (158)
|..+.....++|.|.
T Consensus 74 ~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 74 EHSFSQTLAKYTLHVI 89 (91)
T ss_pred ccCCeEEEEEEEEEEe
Confidence 466656667777765
No 95
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.27 E-value=1.7e-11 Score=75.28 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=55.0
Q ss_pred ceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeee--ecCCeEEEEE-eecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 7 QLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLI--HEGSRYHMWT-EKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
..+.+.+|+.+.|.|.. .|.|.+.+.|+++ +..+ ..+.|..+.. .+ .|.|.+++.+|+|.|+|.|+|
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~-~~~~~~~~d~r~~~~~~~G--------~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLN-EFPNFIPEDGRRFVSQTNG--------NLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEEC-CcccccccCCCeEEeCCCC--------cEEEeecCHhhCceeEEEEEe
Confidence 44568899999999965 7789999999999 6543 2233333332 34 799999999999999999999
Q ss_pred CCCce
Q psy16261 83 TLGGS 87 (158)
Q Consensus 83 ~~g~~ 87 (158)
.+...
T Consensus 82 ~~~~~ 86 (96)
T cd05727 82 PSSTK 86 (96)
T ss_pred cccCC
Confidence 86543
No 96
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.26 E-value=8.7e-11 Score=71.06 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=56.0
Q ss_pred CCCEEEEeEEeecCCC--eeEEEcCCCeeeec---CCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261 14 AAPLTLDCHVESYPKP--ITFWTHENGSLIHE---GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 88 (158)
|+.+.|.|.+.+.+.+ .+.|..+ +..... ....+... ...+...+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p-~~~~~~~~~~~~~~~~~--~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~ 77 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYP-GKKEQRAKSVSENRRSL--QEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK 77 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcC-Ccccccceecccccccc--cccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence 7889999999987654 6789877 432211 11100000 01123456899999999999999999999999888
Q ss_pred EEEEEEEe
Q psy16261 89 GVIKVYNI 96 (158)
Q Consensus 89 ~~~~l~v~ 96 (158)
..+.|.|.
T Consensus 78 ~~t~~~V~ 85 (86)
T cd05862 78 NSTIVIVH 85 (86)
T ss_pred ccEEEEEe
Confidence 88888774
No 97
>KOG4221|consensus
Probab=99.26 E-value=7.5e-11 Score=97.39 Aligned_cols=89 Identities=24% Similarity=0.321 Sum_probs=70.0
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.+....+.+|+.+.|.|.+.|.|.|.+.|.++ +..+.-+ .++.+... ++|.|.+++..|+|.|+|.|.|.
T Consensus 243 ~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrn-g~~i~~ds~rivl~g~--------~slliS~a~~~dSg~YtC~Atn~ 313 (1381)
T KOG4221|consen 243 EPSNAVVVEGDDVVLECVVSGVPKPSVKWLRN-GEKISVDSYRIVLVGG--------SSLLISNATDDDSGKYTCRATNT 313 (1381)
T ss_pred CCCccccccCCcEEEEEEecCCCCCceEEeeC-CeeeeecceEEEEecc--------cceEEeccccccCceEEEEecCC
Confidence 34455678999999999999999999999999 7776654 34433333 37999999999999999999997
Q ss_pred CCceEEEEEEEEeccCCCC
Q psy16261 84 LGGSEGVIKVYNIGYFGSD 102 (158)
Q Consensus 84 ~g~~~~~~~l~v~~~~~~~ 102 (158)
.....+...|.|...|..+
T Consensus 314 ~D~idasaev~V~a~P~~~ 332 (1381)
T KOG4221|consen 314 NDSIDASAEVTVLAPPGFT 332 (1381)
T ss_pred CcccccceEEEEEcCCCCC
Confidence 6666777777777765443
No 98
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.26 E-value=4e-10 Score=66.82 Aligned_cols=84 Identities=26% Similarity=0.490 Sum_probs=64.6
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
..+.+..|+.+.|.|.+.+.+.+.+.|+++++..+....++...... . ...|.|.+++..|.|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-S----NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-C----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 34567899999999999998888999998734444444555554443 1 347999999999999999999988887
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 766666654
No 99
>smart00409 IG Immunoglobulin.
Probab=99.26 E-value=4e-10 Score=66.82 Aligned_cols=84 Identities=26% Similarity=0.490 Sum_probs=64.6
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
..+.+..|+.+.|.|.+.+.+.+.+.|+++++..+....++...... . ...|.|.+++..|.|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSG-S----NSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcC-C----eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 34567899999999999998888999998734444444555554443 1 347999999999999999999988887
Q ss_pred eEEEEEEEE
Q psy16261 87 SEGVIKVYN 95 (158)
Q Consensus 87 ~~~~~~l~v 95 (158)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 766666654
No 100
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.25 E-value=6.1e-11 Score=66.50 Aligned_cols=63 Identities=32% Similarity=0.501 Sum_probs=49.0
Q ss_pred cCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 13 LAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
+|+.+.|.|.+.+.|.+.+.|+++ +..+.. ....... ...|.|.++...|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~-~~~~~~--~~~~~~~-------~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKD-GKPLPE--SNRLSAS-------GSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEEC-CEECCC--CCEEecC-------CcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999998999999999998 665542 1111111 12699999999999999999998765
No 101
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.21 E-value=7e-11 Score=71.00 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=51.3
Q ss_pred eEEEecCCCEEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 8 LIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
...+.+|+.+.|.|.+.+ .+.+.+.|+|+ +..+.... .. +.|.|..++.+|+|.|.|.+.+..|.
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~-g~~~~~~~-----~~--------~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRD-GKAKKYSH-----SN--------SNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEEC-CeEccccC-----CC--------ceEEECccCHHHCEEEEEEEEeCCce
Confidence 345889999999999854 55678999999 65543210 11 26999999999999999999999875
Q ss_pred e
Q psy16261 87 S 87 (158)
Q Consensus 87 ~ 87 (158)
.
T Consensus 74 ~ 74 (83)
T cd05753 74 Y 74 (83)
T ss_pred e
Confidence 4
No 102
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.15 E-value=3e-10 Score=69.72 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=53.3
Q ss_pred EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeee-------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIH-------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 75 (158)
+.+.+|+++.|.|.+.+.+.+.+.|++++.+.+. ..+|+...... ......+|.|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~--~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNL--WDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceeccc--CCCCeEEEEECCCCHHHCEE
Confidence 4577899999999999999999999976222211 11222222210 01123469999999999999
Q ss_pred EEEEEEcCCCce
Q psy16261 76 YKCNAKNTLGGS 87 (158)
Q Consensus 76 Y~C~a~n~~g~~ 87 (158)
|.|.+.|..+..
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999999986643
No 103
>KOG4222|consensus
Probab=99.12 E-value=2e-10 Score=94.39 Aligned_cols=133 Identities=18% Similarity=0.283 Sum_probs=98.5
Q ss_pred ecCceEEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeee--cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261 4 IPSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIH--EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA 80 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 80 (158)
+.+..+.+..|+.+.|.|.- .|.|.|.+.|.|+ +..+. ..+++.+...+ .|.|.++...|.|+|.|++
T Consensus 136 v~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kd-g~pl~~~~~~~~~lisgG--------~LlIsnvrksD~GtY~CVa 206 (1281)
T KOG4222|consen 136 VSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKD-GKPLDHYDVPIIALISGG--------NLLISNVRKSDEGTYACVA 206 (1281)
T ss_pred cCcccccccccceeEEeccCCCCCCCCcceeecC-CCccccccceeEEEecCC--------cEEEeccccCCCceeeeee
Confidence 34455678889999999975 7899999999999 77766 33555555555 7999999999999999999
Q ss_pred EcCCCceEE-EEEEEEeccCCC------------------------CCc-------------------c-cchhhhhhhc
Q psy16261 81 KNTLGGSEG-VIKVYNIGYFGS------------------------DTQ-------------------Y-VTDEEMQRTN 115 (158)
Q Consensus 81 ~n~~g~~~~-~~~l~v~~~~~~------------------------~~~-------------------~-~~~~~~~~~~ 115 (158)
.|.+|..+. ...|.|...+.. +.. . ...+.+.+..
T Consensus 207 tNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~t 286 (1281)
T KOG4222|consen 207 TNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVT 286 (1281)
T ss_pred cccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccC
Confidence 999998744 466666655422 000 1 1224455555
Q ss_pred ccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261 116 QIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS 152 (158)
Q Consensus 116 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (158)
.++.+.| .|.+.|..|-...++.++|-.|+
T Consensus 287 p~deg~y-------~C~a~n~vG~l~asa~ltV~apP 316 (1281)
T KOG4222|consen 287 PTDEGTY-------VCPAENLVGGLEASATLTVQAPP 316 (1281)
T ss_pred CCcccce-------eeeccccccccccccceEEecCc
Confidence 5667777 99999999999999988876554
No 104
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.12 E-value=8.9e-10 Score=78.16 Aligned_cols=68 Identities=19% Similarity=0.327 Sum_probs=54.7
Q ss_pred EEEecCCCEEEEeEEee-----cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 9 IGARLAAPLTLDCHVES-----YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
..+.+|+.+.|.|.+.+ .|.|.++|+|+ +..+....++.+.... +.|.|.+++.+|+|.|+|.|...
T Consensus 139 ~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn-g~~l~~~~r~~~~~~~-------~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 139 YQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN-GNIVLYTDRIQLRNNN-------STLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred ceEecCCCEEEEeeCCCCccccCCCceEEEEEC-CEECCCCCCEEEeCCC-------CEEEECcCCHHhCEEEEEEEEEe
Confidence 45678999999999863 45789999999 8887766666554322 26999999999999999999986
Q ss_pred C
Q psy16261 84 L 84 (158)
Q Consensus 84 ~ 84 (158)
.
T Consensus 211 ~ 211 (227)
T PHA02826 211 K 211 (227)
T ss_pred E
Confidence 4
No 105
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.10 E-value=1.1e-09 Score=65.79 Aligned_cols=66 Identities=23% Similarity=0.375 Sum_probs=55.4
Q ss_pred CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
.+.+.+.+|+++.|.|...+. ...+.|+++ +..+..+.++.....+ |.|..++..|+|.|.|.+..
T Consensus 3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~n-g~~l~~~~r~~~~~~G---------LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFN-GTPLNAQFSYRVGTDG---------LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred ceEEEEecCCCEEEECCCCCC-CccEEEEEC-CcccCCCcceEEeCCC---------CEEEECCHhhCEEEEEEEec
Confidence 356678999999999999885 669999999 8877766777666665 88999999999999999873
No 106
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.10 E-value=2.1e-09 Score=64.27 Aligned_cols=76 Identities=16% Similarity=0.253 Sum_probs=51.3
Q ss_pred EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce--EEEEEE
Q psy16261 17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS--EGVIKV 93 (158)
Q Consensus 17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l 93 (158)
+.|.|.+.| .|.+.++|+++ ++.+............+..+...+.|.+......|.|.|+|.|.|..... ..+++|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEEC-CEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 68889999999 87765432111111111234445678888777788999999999975443 444444
No 107
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.09 E-value=5.5e-09 Score=64.14 Aligned_cols=74 Identities=18% Similarity=0.268 Sum_probs=56.1
Q ss_pred CceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeee-------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 78 (158)
.+.+.+.+|+++.|.|.+.+.....+.|++.+...+ ....|+.......+.+ +|.|.+++.+|.|.|.|
T Consensus 4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~----tL~I~~vq~~D~G~Y~C 79 (95)
T cd05881 4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNEL----RVSLSNVSLSDEGRYFC 79 (95)
T ss_pred cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEE----EEEECcCCcccCEEEEE
Confidence 456778999999999999998777888987732222 2346777665332333 69999999999999999
Q ss_pred EEEcC
Q psy16261 79 NAKNT 83 (158)
Q Consensus 79 ~a~n~ 83 (158)
.+...
T Consensus 80 qv~t~ 84 (95)
T cd05881 80 QLYTD 84 (95)
T ss_pred EEEcc
Confidence 98763
No 108
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.06 E-value=1.8e-09 Score=80.65 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=57.2
Q ss_pred EEecCCCEEEEeEE-----eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 10 GARLAAPLTLDCHV-----ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 10 ~~~~g~~v~l~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
.+.+|+.+.|.|.+ .|.|.+.+.|+|+ +.. ..+......+ ..|.|..+..+|+|.|+|.+.|..
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~-g~~---~~~~~~~~~g-------~~l~i~~~~~~DsG~Y~C~a~N~~ 105 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKR-GAD---NDRIIPIDNG-------SNMLILNPTQSDSGIYICITKNET 105 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEEC-CCc---cceEEEccCC-------ceEEEcccCcccCeEEEEEEECCC
Confidence 35679999999997 6889999999999 532 1122222222 148899999999999999999998
Q ss_pred CceEEEEEEEEec
Q psy16261 85 GGSEGVIKVYNIG 97 (158)
Q Consensus 85 g~~~~~~~l~v~~ 97 (158)
|.....+.|.|..
T Consensus 106 g~~~~s~~L~V~~ 118 (326)
T PHA02785 106 YCDMMSLNLTIVS 118 (326)
T ss_pred cceEEEEEEEEEe
Confidence 8777776666543
No 109
>KOG4221|consensus
Probab=99.05 E-value=1.7e-09 Score=89.62 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=94.0
Q ss_pred ceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
....+..|+.+.|.|.+.+.|.|.+.|.++ ...+..++++.....+ .|.|.+++..|.|.|.|.+.+..-.
T Consensus 148 ~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn-~~pl~~~~r~i~lpsG--------~L~I~~~qp~d~g~yrc~vt~g~~~ 218 (1381)
T KOG4221|consen 148 ESTTLLYGQTALFSCEVNAEPVPTIMWLKN-DQPLPLDSRVIVLPSG--------ALEISGLQPSDTGEYRCVVTGGASQ 218 (1381)
T ss_pred cceeEecCCcEEEEEEEcCccCceeEEecc-cccccCCCcEEEcCCC--------cEEecccccCCCceEEEEEecCCcC
Confidence 345678899999999999999999999999 7777767787777776 8999999999999999999987544
Q ss_pred e-EEEEEEEEeccC------------CC------------------CCc---------------------ccchhhhhhh
Q psy16261 87 S-EGVIKVYNIGYF------------GS------------------DTQ---------------------YVTDEEMQRT 114 (158)
Q Consensus 87 ~-~~~~~l~v~~~~------------~~------------------~~~---------------------~~~~~~~~~~ 114 (158)
. +....|.+...+ .. +.. ....+.+.+.
T Consensus 219 r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a 298 (1381)
T KOG4221|consen 219 RTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNA 298 (1381)
T ss_pred CccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEecc
Confidence 3 223344333111 00 000 0123455556
Q ss_pred cccccccccCcccceEeeeccCCceEEEEccccCCCCCC
Q psy16261 115 NQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSG 153 (158)
Q Consensus 115 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (158)
..++.|.| .|||.|..-.-..++.++|-.||+
T Consensus 299 ~~~dSg~Y-------tC~Atn~~D~idasaev~V~a~P~ 330 (1381)
T KOG4221|consen 299 TDDDSGKY-------TCRATNTNDSIDASAEVTVLAPPG 330 (1381)
T ss_pred ccccCceE-------EEEecCCCcccccceEEEEEcCCC
Confidence 66777888 999999777777788888655544
No 110
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.05 E-value=5.2e-09 Score=78.21 Aligned_cols=81 Identities=22% Similarity=0.311 Sum_probs=57.8
Q ss_pred CceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecC-----CeEEEEEee---cccceEEEEEEEcCCCCCCCe
Q psy16261 6 SQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEG-----SRYHMWTEK---FSSYKFYMRLYIGSLSKSDFG 74 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~l~i~~v~~~d~G 74 (158)
|+.+.+..|+.+.|.|.+.|.|.+ .+.|+++ +..+... .++...... .......+.|.|.+++.+|+|
T Consensus 227 p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kn-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G 305 (326)
T PHA02785 227 PEGVVTSIGSNLTIACRVSLRPPTTDADVFWISN-GMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDAT 305 (326)
T ss_pred CCcEEecCCCcEEEEEEEECCCCCCCceEEEEEC-CEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCe
Confidence 344566789999999999998864 8999999 7766432 233222110 011123457999999999999
Q ss_pred EEEEEEEcCCCce
Q psy16261 75 TYKCNAKNTLGGS 87 (158)
Q Consensus 75 ~Y~C~a~n~~g~~ 87 (158)
.|+|.|.|..+..
T Consensus 306 ~Y~C~A~n~~~~~ 318 (326)
T PHA02785 306 TFTCMAFTIPSIS 318 (326)
T ss_pred eeEEEEEeccCce
Confidence 9999999987544
No 111
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.05 E-value=1.6e-09 Score=64.03 Aligned_cols=71 Identities=30% Similarity=0.530 Sum_probs=54.2
Q ss_pred EEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc-e
Q psy16261 9 IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG-S 87 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~ 87 (158)
..+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.... . .+.+..+..+|.|.|.|.+.+..+. .
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~-~~~~~~~~-------~--------~~~~~~~~~~~~g~y~C~~~~~~~~~~ 72 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKN-GSPINSSQ-------N--------GLFIPNVSPEDSGNYTCRASNGSGSNT 72 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEET-TEEEEEES-------S--------EEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeee-eeeeeeee-------e--------eeeeeeeccccCEEEEEEEEeCCCCeE
Confidence 4578999999999999998999999998 65554221 1 2667888999999999999996543 3
Q ss_pred EEEEEEEE
Q psy16261 88 EGVIKVYN 95 (158)
Q Consensus 88 ~~~~~l~v 95 (158)
+..+.|.|
T Consensus 73 s~~~~v~V 80 (80)
T PF13895_consen 73 STSVNVTV 80 (80)
T ss_dssp EEEEEEEE
T ss_pred eeeEEeeC
Confidence 45555543
No 112
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.05 E-value=3.9e-10 Score=64.13 Aligned_cols=63 Identities=30% Similarity=0.512 Sum_probs=44.1
Q ss_pred CCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261 14 AAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA 80 (158)
Q Consensus 14 g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 80 (158)
|+.+.|.|.+ .+.+...+.|.++ +............... ......|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKN-GQSLPEGSTTNRSTNS---VSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEET-TTTTSEEEEEEEEETT---TEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEEC-CccccCcceeEeeccc---ceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 7777889999999 5544333222222211 111124999999999999999986
No 113
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.01 E-value=3.9e-09 Score=66.08 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=56.2
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCe----ee-e-------------cCCeEEEEEeecccceEEEEEE
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGS----LI-H-------------EGSRYHMWTEKFSSYKFYMRLY 64 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~----~~-~-------------~~~~~~~~~~~~~~~~~~~~l~ 64 (158)
++++-...+.+|+++.|.|.........+.|+|+... .+ . ...|..+...+ +|.
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng--------SL~ 73 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG--------SLL 73 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC--------cEE
Confidence 4445445678999999999765444448999997211 11 0 11333344333 899
Q ss_pred EcCCCCCCCeEEEEEEEcCCC-ceEEEEEEE
Q psy16261 65 IGSLSKSDFGTYKCNAKNTLG-GSEGVIKVY 94 (158)
Q Consensus 65 i~~v~~~d~G~Y~C~a~n~~g-~~~~~~~l~ 94 (158)
|.+++.+|+|.|+|.+.+... .....+.|.
T Consensus 74 I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 74 IQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 999999999999999998763 334455553
No 114
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.98 E-value=5.5e-09 Score=64.13 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=51.6
Q ss_pred EEecCCCEEEEeEE-e----ecCCCeeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 10 GARLAAPLTLDCHV-E----SYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 10 ~~~~g~~v~l~C~~-~----g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.+..|....|.|.- . ..+.|.+.|+|+ +..+.... ++...... +.|.|.++..+|+|.|+|.+.+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd-~~~l~~~~~~~~~~~~~-------~~L~I~~v~~~D~G~YtC~~~~~ 77 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKD-SVLLDKDNEKFYSLKGS-------TYLHIIDVSLNDSGYYTCKLQFT 77 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccC-CEECcCCCcceEecCCC-------CEEEEEEcChhhCEEEEEEEEEe
Confidence 45678899999973 2 346679999999 87775443 33221111 25999999999999999999998
Q ss_pred CCce
Q psy16261 84 LGGS 87 (158)
Q Consensus 84 ~g~~ 87 (158)
.|..
T Consensus 78 ~~g~ 81 (95)
T cd05897 78 HEGK 81 (95)
T ss_pred eCCE
Confidence 7655
No 115
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.95 E-value=9e-09 Score=63.72 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=53.4
Q ss_pred eEEEecCCCEEEEeEEe-----------ecCCCeeEEEcCCCeeeecC-------CeEEEEEeecccceEEEEEEEcCCC
Q psy16261 8 LIGARLAAPLTLDCHVE-----------SYPKPITFWTHENGSLIHEG-------SRYHMWTEKFSSYKFYMRLYIGSLS 69 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~-----------g~p~p~i~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~v~ 69 (158)
...+.+|+.+.|.|... ......+.|+|+ +...... .|+..... .|.|..+.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~-~~~~~~~~~~~~~~~Ri~~~~~---------~Lwf~Pa~ 78 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKS-SGDGEEPIEIIFDGVRMSKEED---------SIWFRPAE 78 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEEC-CCCCCCCCcccccceeEEEeCC---------EEEEEeCC
Confidence 45688999999999961 112347899999 5333221 13333322 59999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 70 KSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 70 ~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
.+|+|.|+|.+.|.-......+.|.
T Consensus 79 ~eDSG~Y~C~~rN~t~C~~~~i~l~ 103 (104)
T cd05896 79 LQDSGLYTCVLRNSTYCMKVSMSLT 103 (104)
T ss_pred hhhCeEEEEEECCCCcceEEEEEEE
Confidence 9999999999999865555555544
No 116
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.94 E-value=4.3e-09 Score=61.21 Aligned_cols=71 Identities=30% Similarity=0.442 Sum_probs=46.4
Q ss_pred eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNA 80 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 80 (158)
|...+.......+. +.|.|.+.+.+ .+.+.|+.. ............. ..+.|.|.++..+|.|.|+|.|
T Consensus 4 I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~--------~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 4 ISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFNSNSRGSSS--------SNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp EEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEEEEEEEEEE--------EEEEEEESSCCGGGTEEEEEEE
T ss_pred EEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCceeeeeeeccc--------eeeEEEEccCCHHhCcEEEEEE
Confidence 34444444333333 99999999988 779999922 1111111111111 2347999999999999999999
Q ss_pred Ec
Q psy16261 81 KN 82 (158)
Q Consensus 81 ~n 82 (158)
.|
T Consensus 74 ~N 75 (75)
T PF13927_consen 74 SN 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 87
No 117
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.94 E-value=6.6e-09 Score=73.74 Aligned_cols=88 Identities=22% Similarity=0.312 Sum_probs=60.5
Q ss_pred ceEEEecCCCEEEEeEEeecC-----------CCeeEEEcCCCeee--e-cCCeE---EEEEeecccceEEEEEEEcCCC
Q psy16261 7 QLIGARLAAPLTLDCHVESYP-----------KPITFWTHENGSLI--H-EGSRY---HMWTEKFSSYKFYMRLYIGSLS 69 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~p-----------~p~i~W~~~~~~~~--~-~~~~~---~~~~~~~~~~~~~~~l~i~~v~ 69 (158)
..+.+.+|+.+.|.|.+.+.| .+.+.|+|. +... . .+.+. .+.... .......|.|.+++
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~-~s~~~v~~~~~~~~~~~i~~~~--~~~r~~~L~I~~v~ 106 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKT-DSLAFVRDSGARTKIKKITHNE--IGDRSENLWIGNVI 106 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeC-CeEEEEEcCCCccccccccccc--eecCCCeEEECCCC
Confidence 456789999999999997754 348999999 4331 1 11110 000000 00012379999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 70 KSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 70 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
.+|+|.|+|.|.|..+.....+.|.|..
T Consensus 107 ~~DsG~Y~C~a~N~~~~~~~~i~L~V~~ 134 (227)
T PHA02826 107 NIDEGIYICTISSGNICEESTIRLTFDS 134 (227)
T ss_pred hHHCEEEEEEEEECCcceEEEEEEEEec
Confidence 9999999999999988877778777744
No 118
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.92 E-value=1.6e-08 Score=63.54 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=56.6
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC-e-e---ee--------cCCeEEEEEeecccceEEEEEEEcCCC
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG-S-L---IH--------EGSRYHMWTEKFSSYKFYMRLYIGSLS 69 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~-~-~---~~--------~~~~~~~~~~~~~~~~~~~~l~i~~v~ 69 (158)
..++..+.+.+|+++.|.|.+.+.+...+.|++... . . +. ..+|+.+..... ....+|.|.+++
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~---~~~~~L~I~~~~ 78 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS---RKSSSLHISAAQ 78 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc---CCEEEEEECCCC
Confidence 456777889999999999999988888999987521 1 0 10 124554433210 123479999999
Q ss_pred CCCCeEEEEEEEcCC
Q psy16261 70 KSDFGTYKCNAKNTL 84 (158)
Q Consensus 70 ~~d~G~Y~C~a~n~~ 84 (158)
.+|+|.|.|.+.+..
T Consensus 79 ~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 79 LSDSAVYFCALSESG 93 (109)
T ss_pred HHHCEEEEEEEecCC
Confidence 999999999998764
No 119
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.92 E-value=2.8e-08 Score=62.29 Aligned_cols=85 Identities=22% Similarity=0.395 Sum_probs=56.3
Q ss_pred cCCCEEEEeEEeecC------CCeeEEEcCC--C--e-ee-e-cCCeEEEE------EeecccceEEEEEEEcCCCCCCC
Q psy16261 13 LAAPLTLDCHVESYP------KPITFWTHEN--G--S-LI-H-EGSRYHMW------TEKFSSYKFYMRLYIGSLSKSDF 73 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p------~p~i~W~~~~--~--~-~~-~-~~~~~~~~------~~~~~~~~~~~~l~i~~v~~~d~ 73 (158)
.|+++.|.|.....+ ...+.|++.. . . .+ . .+.+.... ...........+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987753 4589999861 1 1 11 1 11111110 00000111346899999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEec
Q psy16261 74 GTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 74 G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999877778888888765
No 120
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.92 E-value=1.5e-08 Score=63.99 Aligned_cols=77 Identities=16% Similarity=0.223 Sum_probs=54.2
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCC-ee---ee-------------cCCeEEEEEeecccceEEEEEEE
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENG-SL---IH-------------EGSRYHMWTEKFSSYKFYMRLYI 65 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~-~~---~~-------------~~~~~~~~~~~~~~~~~~~~l~i 65 (158)
...|..+.+.+|+++.|.|.+.+ +.+.+.|++... .. +. ..+|+........ ...|.|
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~L~I 76 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLT----RSSLTI 76 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCC----ccEEEE
Confidence 34667788999999999999988 778999998621 11 10 0134433322111 247999
Q ss_pred cCCCCCCCeEEEEEEEcCC
Q psy16261 66 GSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 66 ~~v~~~d~G~Y~C~a~n~~ 84 (158)
.+++.+|+|.|.|.+.+..
T Consensus 77 ~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 77 KSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred CCCChhhCEEEEEEeeCCC
Confidence 9999999999999998753
No 121
>KOG4194|consensus
Probab=98.91 E-value=3.6e-09 Score=82.82 Aligned_cols=142 Identities=10% Similarity=0.121 Sum_probs=91.0
Q ss_pred eecCceEEEecCCCEEEEeEEeec--CCCeeEEEcCCCeeeec-----CCeEEEEEee---cccceEEEEEEEcCCCCCC
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESY--PKPITFWTHENGSLIHE-----GSRYHMWTEK---FSSYKFYMRLYIGSLSKSD 72 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~--p~p~i~W~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~l~i~~v~~~d 72 (158)
...|..+.+..|+++.|.|.+.+. .+-.+.|.++ .+.... .-++...... ++.....+.|.+.+|...|
T Consensus 507 ~~qPe~~~al~g~nirftC~a~sssasplsi~WR~d-nevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td 585 (873)
T KOG4194|consen 507 VTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKD-NEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTD 585 (873)
T ss_pred ecCchHhhhhhccceEEEEEeccCCCCCceeEeeec-cccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeeccc
Confidence 345555667789999999999883 3448889998 443221 1111111100 1122234579999999999
Q ss_pred CeEEEEEEEcCCCce-EEEEEEEEeccCCC------------------------CCc----------ccch---------
Q psy16261 73 FGTYKCNAKNTLGGS-EGVIKVYNIGYFGS------------------------DTQ----------YVTD--------- 108 (158)
Q Consensus 73 ~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~------------------------~~~----------~~~~--------- 108 (158)
.|.|+|++.|.+|+. +..+.|.|-..|.- |.+ ..+.
T Consensus 586 ~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vm 665 (873)
T KOG4194|consen 586 EGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVM 665 (873)
T ss_pred CceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeec
Confidence 999999999999987 44555555443311 111 0011
Q ss_pred -----hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261 109 -----EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS 152 (158)
Q Consensus 109 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (158)
-.+...+..|.|.| +|.|.|..|....++.++|-+.|
T Consensus 666 pedd~f~Itnvk~eD~GiY-------tC~A~n~AG~isanAtL~V~e~p 707 (873)
T KOG4194|consen 666 PEDDVFFITNVKIEDQGIY-------TCTAQNVAGQISANATLTVLETP 707 (873)
T ss_pred CCCCEEEEeccccccccee-------EEeeeccccceeeceEEEEecCC
Confidence 12223456677888 99999999999999999976554
No 122
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.87 E-value=2.7e-08 Score=59.08 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=49.1
Q ss_pred EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
+.|.|...+ .|.+.++|+++ ++.+..... ....+..+...+.|.|.-....|.+.|.|.|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~-~~~l~~~~~---~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRD-RKELKGVIS---QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEEC-CEECCCCcc---cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 689999855 78889999999 877743211 01111223445679999999999999999999998764
No 123
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.83 E-value=2.1e-08 Score=61.18 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=49.5
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
...+.. .+..|+++.|.|... .+...+.|+++ +...... .. . .....+.|.|.+++.+|+|.|+|...+
T Consensus 6 ~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~-g~~~~~~-~~---~----~~~~~~~f~i~~v~~~~~G~Y~C~~~~ 74 (91)
T cd05751 6 WAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYRE-GSTFAVK-KP---P----EPQNKAKFFIPSMKREHAGRYRCYYRS 74 (91)
T ss_pred EecCCC-ccCCCCcEEEEEecC-CCCCEEEEEEC-CCCcccc-cc---C----CCceeEEEEccCCChhHCEEEEEEEEC
Confidence 444544 378999999999885 56778889998 5532211 00 0 011224799999999999999999988
Q ss_pred C
Q psy16261 83 T 83 (158)
Q Consensus 83 ~ 83 (158)
.
T Consensus 75 ~ 75 (91)
T cd05751 75 G 75 (91)
T ss_pred C
Confidence 6
No 124
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.83 E-value=6.7e-08 Score=60.53 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=56.1
Q ss_pred cCCCEEEEeEEeecC------CCeeEEEcCCCe-----e-eec-----------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261 13 LAAPLTLDCHVESYP------KPITFWTHENGS-----L-IHE-----------GSRYHMWTEKFSSYKFYMRLYIGSLS 69 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p------~p~i~W~~~~~~-----~-~~~-----------~~~~~~~~~~~~~~~~~~~l~i~~v~ 69 (158)
.|+++.|.|.....| ...+.|+|.... . +.. ..|+.+... .....+|.|.+++
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~----~~~~~sL~I~~v~ 76 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA----HDLDASLVITDLR 76 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC----CCCcEEEEEccCC
Confidence 488999999987653 347999986211 1 111 122222111 0123579999999
Q ss_pred CCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 70 KSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 70 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
.+|+|.|.|.+.+..+.....+.|.|.+
T Consensus 77 ~~DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 77 LEDYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred hHHCEEEEEEEEecccceEEEEEEEEEE
Confidence 9999999999999988888888888765
No 125
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.82 E-value=7.6e-08 Score=60.96 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=55.7
Q ss_pred cCCCEEEEeEEeecC------------CCeeEEEcCC-C---eeee-cC----------CeEEEEEeecccceEEEEEEE
Q psy16261 13 LAAPLTLDCHVESYP------------KPITFWTHEN-G---SLIH-EG----------SRYHMWTEKFSSYKFYMRLYI 65 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p------------~p~i~W~~~~-~---~~~~-~~----------~~~~~~~~~~~~~~~~~~l~i 65 (158)
.|+++.|.|...... .+.+.|+|.. + ..+. .. .|+.+.... ......+|.|
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~--~~~~~asL~I 78 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYP--AIPSDATLEI 78 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccC--CCCCCcEEEE
Confidence 489999999997643 4689999851 1 1111 11 244333210 0112358999
Q ss_pred cCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 66 GSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 66 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 79 ~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 79 TELRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred eecccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 99999999999999998777777777777764
No 126
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.81 E-value=4.8e-08 Score=59.46 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCee----ee-------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSL----IH-------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 76 (158)
|++|.|.|.........+.|+++.... +. ...|+.+... .+|.|.+++.+|+|.|
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--------~sL~I~~l~~~DsG~Y 72 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN--------GSLLIQNLTKEDSGTY 72 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC--------ceEEEccCCchhcEEE
Confidence 789999999887667799999873211 10 0123333222 3899999999999999
Q ss_pred EEEEEcCCCce-EEEEEEE
Q psy16261 77 KCNAKNTLGGS-EGVIKVY 94 (158)
Q Consensus 77 ~C~a~n~~g~~-~~~~~l~ 94 (158)
.|.+....+.. ...+.|.
T Consensus 73 ~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 73 TLQIISTNGVTENAKFFLR 91 (92)
T ss_pred EEEEEcCCCcEEEEEEEEE
Confidence 99999876443 4445443
No 127
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.79 E-value=1.2e-07 Score=58.66 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=51.8
Q ss_pred CCCEEEEeEEeecCC---CeeEEEcCCCee-e--ecC-------------CeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261 14 AAPLTLDCHVESYPK---PITFWTHENGSL-I--HEG-------------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74 (158)
Q Consensus 14 g~~v~l~C~~~g~p~---p~i~W~~~~~~~-~--~~~-------------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G 74 (158)
|+++.|.|....... ..+.|++..... + ... +|+.+.... ......+|.|.+++.+|+|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~--~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDA--IAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeeccc--ccCCcEEEEEEcCChhhCE
Confidence 688999999864322 267898763211 1 000 233221110 0112357999999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEE
Q psy16261 75 TYKCNAKNTLGGSEGVIKVYN 95 (158)
Q Consensus 75 ~Y~C~a~n~~g~~~~~~~l~v 95 (158)
.|.|.+.|..+..+..+.|.|
T Consensus 79 ~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEecCCcEEEEEEEEEE
Confidence 999999998777777787766
No 128
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.76 E-value=8.9e-08 Score=60.02 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=53.5
Q ss_pred eeecCceEEEecCCCEEEEeEEeecC-CCeeEEEcCC-C---eeee-c--------CCeEEEEEeecccceEEEEEEEcC
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESYP-KPITFWTHEN-G---SLIH-E--------GSRYHMWTEKFSSYKFYMRLYIGS 67 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~p-~p~i~W~~~~-~---~~~~-~--------~~~~~~~~~~~~~~~~~~~l~i~~ 67 (158)
+...|..+.+.+|+++.|.|.+.+.. ...+.|++.. + ..+. . ..++...... ....|.|.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~-----~~~~L~I~~ 77 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSG-----TDFTLTISR 77 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccC-----CEEEEEECC
Confidence 55667778899999999999997765 5689998752 1 1111 0 1234332211 124699999
Q ss_pred CCCCCCeEEEEEEEcC
Q psy16261 68 LSKSDFGTYKCNAKNT 83 (158)
Q Consensus 68 v~~~d~G~Y~C~a~n~ 83 (158)
++.+|+|.|.|.+.+.
T Consensus 78 ~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 78 VEPEDAAVYYCQQYGT 93 (106)
T ss_pred CChHHCEEEEEEEeCC
Confidence 9999999999998764
No 129
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.73 E-value=9.4e-08 Score=58.51 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=55.3
Q ss_pred ecCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 12 RLAAPLTLDCHVESY-PK-PITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 12 ~~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
..|+.+.|.|.+.|. |. ..++|+++ +..+..... .......++.|...+.|.+......|.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKN-GKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEEC-CEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 468899999999998 53 58999999 777655433 334444445677777888877777799999999998754
No 130
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.71 E-value=1.1e-07 Score=59.25 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=50.9
Q ss_pred EEecCCCEEEEeEEeec-CCCeeEEEcCCC----eeee------------cCCeEEEEEeecccceEEEEEEEcCCCCCC
Q psy16261 10 GARLAAPLTLDCHVESY-PKPITFWTHENG----SLIH------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~-p~p~i~W~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d 72 (158)
.+.+|+.+.|.|.+... +...+.|++... ..+. ...|+.+..... ....+|.|.+++.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~sL~I~~v~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSS---KSSFTLTISSLQPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEecc---CCEEEEEECCCCHHH
Confidence 46789999999999886 677899988522 1111 113444333221 123479999999999
Q ss_pred CeEEEEEEEcCCC
Q psy16261 73 FGTYKCNAKNTLG 85 (158)
Q Consensus 73 ~G~Y~C~a~n~~g 85 (158)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999998764
No 131
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.68 E-value=7.3e-07 Score=56.32 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=55.7
Q ss_pred cCCCEEEEeEEeecC----------CCeeEEEcCC-Cee--ee--cC----------CeEEEEEeecccceEEEEEEEcC
Q psy16261 13 LAAPLTLDCHVESYP----------KPITFWTHEN-GSL--IH--EG----------SRYHMWTEKFSSYKFYMRLYIGS 67 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p----------~p~i~W~~~~-~~~--~~--~~----------~~~~~~~~~~~~~~~~~~l~i~~ 67 (158)
.|+++.|.|.....+ ...+.|+|.. ++. +. .+ +|+.+.... .-....+|.|.+
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~--~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYP--ENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCC--CCCCcEEEEECC
Confidence 489999999997654 2578999852 111 10 11 233221110 011235799999
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
++.+|+|.|.|.+.......+..+.|.|.+
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999998777778888888865
No 132
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.68 E-value=5e-07 Score=55.63 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=50.5
Q ss_pred CCEEEEeEEeecC---CCeeEEEcCCCe---ee--e---------c--CCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261 15 APLTLDCHVESYP---KPITFWTHENGS---LI--H---------E--GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75 (158)
Q Consensus 15 ~~v~l~C~~~g~p---~p~i~W~~~~~~---~~--~---------~--~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 75 (158)
+++.|.|.....+ ...+.|+|.... .+ . . ..|....... ....+|.|.+++.+|+|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~----~~~~sL~I~~v~~~D~G~ 76 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSS----LEDATISISNLRLEDEGN 76 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCC----CCceEEEEccCCcccCEE
Confidence 4689999997754 347999986321 10 0 0 0121111100 023589999999999999
Q ss_pred EEEEEEc-CCCceEEEEEEEE
Q psy16261 76 YKCNAKN-TLGGSEGVIKVYN 95 (158)
Q Consensus 76 Y~C~a~n-~~g~~~~~~~l~v 95 (158)
|.|.+.+ ..|.....+.|.|
T Consensus 77 Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 77 YICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEEEEEeCCCCcEEEEEEEEe
Confidence 9999875 6677787777766
No 133
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.67 E-value=9.7e-07 Score=56.26 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=51.1
Q ss_pred CceEEEecCCCEEEEeEEeecC----CCeeEEEcC-C-------------Ceeee-cC----CeEEEEEeecccceEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYP----KPITFWTHE-N-------------GSLIH-EG----SRYHMWTEKFSSYKFYMR 62 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~-~-------------~~~~~-~~----~~~~~~~~~~~~~~~~~~ 62 (158)
+..+.+..|+.+.|.|...... ...+.|... . +.... .. +|+.... +......+
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g---~~~~~daS 81 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVG---NPSRKDGS 81 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeC---CCCcCeeE
Confidence 3456788999999999997643 348899332 1 11111 00 1222211 11223468
Q ss_pred EEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 63 LYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 63 l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
|.|.+++.+|.|.|+|.+.|.-+..
T Consensus 82 I~I~nv~~sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 82 IVIHNLDYTDNGTFTCDVKNPPDIV 106 (116)
T ss_pred EEEccCCcccCEEEEEEEEcCCCcC
Confidence 9999999999999999999986543
No 134
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.66 E-value=2e-07 Score=59.37 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=52.7
Q ss_pred ecCceEEEecCCCEEEEeEEee--cCCCeeEEEcCC--Cee---ee-------------cCCeEEEEEeecccceEEEEE
Q psy16261 4 IPSQLIGARLAAPLTLDCHVES--YPKPITFWTHEN--GSL---IH-------------EGSRYHMWTEKFSSYKFYMRL 63 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~~g--~p~p~i~W~~~~--~~~---~~-------------~~~~~~~~~~~~~~~~~~~~l 63 (158)
..+..+.+.+|+++.|.|.+.+ .+.+.+.|++.. ..+ +. ...|+.+..... .....|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~L 79 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVG---KSTSTL 79 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECC---CCEEEE
Confidence 3566778899999999999987 677889999851 111 10 123444432221 013479
Q ss_pred EEcCCCCCCCeEEEEEEEc
Q psy16261 64 YIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 64 ~i~~v~~~d~G~Y~C~a~n 82 (158)
.|.+++.+|+|.|.|.+..
T Consensus 80 ~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 80 TIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEECCHHHCEEEEEEEec
Confidence 9999999999999998864
No 135
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.61 E-value=8.6e-07 Score=52.97 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=46.8
Q ss_pred EEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 17 LTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 17 v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
+.|.|.+.+. |.+.++|+++ +..+.... .......+..|...+.|.+......+.+.|+|.+.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~-~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKG-DKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEEC-CEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999775 8889999999 77765332 1222112234556667777666666678999999997554
No 136
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.61 E-value=1.3e-06 Score=55.69 Aligned_cols=80 Identities=21% Similarity=0.337 Sum_probs=50.1
Q ss_pred CceEEEecCCCEEEEeEEeecC----CCeeEEEcC---CCe--eee-c--------CCeEE--EEEeecccceEEEEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYP----KPITFWTHE---NGS--LIH-E--------GSRYH--MWTEKFSSYKFYMRLYI 65 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~---~~~--~~~-~--------~~~~~--~~~~~~~~~~~~~~l~i 65 (158)
+..+.+.+|+++.|.|.....+ ...+.|++. ++. .+. . .+++. ....+ +.....++|.|
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~-~~~~~~~sL~I 83 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDG-NIMRRDASILI 83 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEec-CCcCCceEEEE
Confidence 5567899999999999986543 236899742 111 111 0 11221 11000 11112357999
Q ss_pred cCCCCCCCeEEEEEEEcCCCc
Q psy16261 66 GSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 66 ~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
.+++.+|+|.|.|.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999987553
No 137
>KOG4222|consensus
Probab=98.60 E-value=7.2e-08 Score=79.88 Aligned_cols=85 Identities=26% Similarity=0.466 Sum_probs=69.3
Q ss_pred cCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEe-ecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTE-KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
++....+..|..+.|.|.+.|.|.|.+.|.|. +..+. ..|+.+... . +|.|..++..|.|.|.|.+.|.
T Consensus 231 rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~-~~~~P-~~ry~i~~d~q--------tl~i~r~tp~deg~y~C~a~n~ 300 (1281)
T KOG4222|consen 231 RPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKD-DPSLP-RSRYSILDDTQ--------TLRIDRVTPTDEGTYVCPAENL 300 (1281)
T ss_pred ccccceeecccccccccccCCCCCCceeeecc-CCCCC-ccceeeeeccc--------cccccccCCCcccceeeecccc
Confidence 34456688899999999999999999999997 44443 245555544 4 7999999999999999999999
Q ss_pred CCceEEEEEEEEeccC
Q psy16261 84 LGGSEGVIKVYNIGYF 99 (158)
Q Consensus 84 ~g~~~~~~~l~v~~~~ 99 (158)
+|...+...|.|...+
T Consensus 301 vG~l~asa~ltV~apP 316 (1281)
T KOG4222|consen 301 VGGLEASATLTVQAPP 316 (1281)
T ss_pred ccccccccceEEecCc
Confidence 9999888888877765
No 138
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.59 E-value=4.3e-07 Score=56.06 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=50.7
Q ss_pred cCCCEEEEeEEee-cCCCeeEEEcCCCeeee-cC------------CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEE
Q psy16261 13 LAAPLTLDCHVES-YPKPITFWTHENGSLIH-EG------------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78 (158)
Q Consensus 13 ~g~~v~l~C~~~g-~p~p~i~W~~~~~~~~~-~~------------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 78 (158)
.|++|.|.|.... .....+.|++. ...+. .. +++.....- .....+|.|.+++.+|+|.|.|
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~-~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c 78 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFN-TSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA 78 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecC-CEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence 6999999998855 44558899987 33221 11 111110000 0112479999999999999999
Q ss_pred EEEcCCCce-EEEEEEEE
Q psy16261 79 NAKNTLGGS-EGVIKVYN 95 (158)
Q Consensus 79 ~a~n~~g~~-~~~~~l~v 95 (158)
.+.+..|.. ...+.|.|
T Consensus 79 ~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 79 EINTKNGVTITKEFTLHI 96 (97)
T ss_pred EEEcCCCCeEEEEEEEEe
Confidence 999887654 44555544
No 139
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.58 E-value=9.6e-07 Score=55.36 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=58.8
Q ss_pred eeecCceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCC----eeee---c-----------CCeEEEEEeecccceEEEE
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVE-SYPKPITFWTHENG----SLIH---E-----------GSRYHMWTEKFSSYKFYMR 62 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~----~~~~---~-----------~~~~~~~~~~~~~~~~~~~ 62 (158)
++.++..+.+.+|+++.|.|... ......+.|++... ..+. . ..++.+..... ....+
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~s 80 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGS---QNNFS 80 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETT---TTEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeeccc---CCeEE
Confidence 34557788899999999999999 44566899988522 1111 0 12222222221 11347
Q ss_pred EEEcCCCCCCCeEEEEEEEcCC-CceEEEEEEEE
Q psy16261 63 LYIGSLSKSDFGTYKCNAKNTL-GGSEGVIKVYN 95 (158)
Q Consensus 63 l~i~~v~~~d~G~Y~C~a~n~~-g~~~~~~~l~v 95 (158)
|.|.+++.+|+|.|.|.+.... ......+.|.|
T Consensus 81 L~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 81 LTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 9999999999999999998872 22233455543
No 140
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.53 E-value=2.4e-06 Score=51.15 Aligned_cols=68 Identities=9% Similarity=0.148 Sum_probs=48.3
Q ss_pred EEEEeEEeec-CCCeeEEEcCCCeeeecCCeEEEEEeec-ccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 17 LTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 17 v~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
+.|.|.+.|. |.+.|+|+++ +..+.... ........ ..|...+.|.+......+...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~-g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKG-DQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEEC-CEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6899999885 8889999999 77665432 23333332 24555677877666677778899999987543
No 141
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.51 E-value=2.7e-06 Score=54.14 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=49.0
Q ss_pred CceEEEecCCCEEEEeEEeecC----CCeeEEEcCCC-----ee-eec---------CCeE----EEEEeecccceEEEE
Q psy16261 6 SQLIGARLAAPLTLDCHVESYP----KPITFWTHENG-----SL-IHE---------GSRY----HMWTEKFSSYKFYMR 62 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p----~p~i~W~~~~~-----~~-~~~---------~~~~----~~~~~~~~~~~~~~~ 62 (158)
|..+.+.+|+.+.|.|...... ...+.|++... .. +.. .+++ .... +.-...++
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~s 81 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVG---NPSRKDAS 81 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEec---CCcCCeeE
Confidence 5566788999999999986543 24688975311 11 110 1111 1111 11112357
Q ss_pred EEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 63 LYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 63 l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
|.|.+++.+|.|.|.|.+.|.-.
T Consensus 82 L~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 82 IVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EEEeeCCcccCEEEEEEEEeCCC
Confidence 99999999999999999998644
No 142
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.50 E-value=3.4e-06 Score=53.25 Aligned_cols=83 Identities=20% Similarity=0.348 Sum_probs=54.6
Q ss_pred cCCCEEEEeEEeecC-------CCeeEEEcCC----Cee---ee-cC----------CeEEEEEeecccceEEEEEEEcC
Q psy16261 13 LAAPLTLDCHVESYP-------KPITFWTHEN----GSL---IH-EG----------SRYHMWTEKFSSYKFYMRLYIGS 67 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p-------~p~i~W~~~~----~~~---~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~ 67 (158)
.|+.+.|.|...-.| .+.+.|.+.. ... +. .+ +|..+.... .-....+|.|.+
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~--~~~~~asL~i~n 78 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYP--KNRYNASLVLSR 78 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCC--CCCceEEEEECC
Confidence 378899999976433 3689998751 111 10 11 233332211 112346899999
Q ss_pred CCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 68 LSKSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 68 v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
++.+|+|.|.|.+.......+..+.|.|.+
T Consensus 79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999999766667788888765
No 143
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.49 E-value=4.5e-06 Score=49.73 Aligned_cols=77 Identities=10% Similarity=0.081 Sum_probs=49.4
Q ss_pred EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy16261 17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVY 94 (158)
Q Consensus 17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 94 (158)
+.|.|.+.| .|.+.|+|+++ +..+..... ............++|.|.--...|...|+|.|.|..-.. .....|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~-~~~l~~~~~--~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~ 78 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKG-NKELTGKST--VEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLE 78 (82)
T ss_pred EEEEEEecCCCCCCEEEEEEC-CEECcCccc--ceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEE
Confidence 689999877 57779999999 777644311 111111234455678886666666777999999975432 4455555
Q ss_pred Ee
Q psy16261 95 NI 96 (158)
Q Consensus 95 v~ 96 (158)
|.
T Consensus 79 V~ 80 (82)
T cd05883 79 VQ 80 (82)
T ss_pred EE
Confidence 54
No 144
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.49 E-value=1.7e-06 Score=51.86 Aligned_cols=68 Identities=12% Similarity=0.117 Sum_probs=47.6
Q ss_pred EEEEeEEee-cCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 17 LTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 17 v~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
+.|.|.+.| .|...++|+++ +..+............+..|...+.|.+..-...+...|+|.+.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kn-g~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKN-DKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEEC-CEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 689999988 66778999999 777654332222233334566677888875556667789999998744
No 145
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.46 E-value=1.2e-06 Score=54.10 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=47.5
Q ss_pred EEecCCCEEEEeEEeec--CCCeeEEEcCCC-ee---ee---------cCCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261 10 GARLAAPLTLDCHVESY--PKPITFWTHENG-SL---IH---------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~--p~p~i~W~~~~~-~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G 74 (158)
.+.+|+++.|.|...+. ....+.|++... .. +. ..+|+...... ....|.|.+++.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-----NTASLTISGAQTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-----CEEEEEECCCChhhCE
Confidence 36789999999998775 556799987521 11 11 01244443322 2347999999999999
Q ss_pred EEEEEEEcC
Q psy16261 75 TYKCNAKNT 83 (158)
Q Consensus 75 ~Y~C~a~n~ 83 (158)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999988753
No 146
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.45 E-value=2.6e-06 Score=54.18 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=53.6
Q ss_pred eeecCceEEEecCCCEEEEeEEeec-CCCeeEEEcCC-Ce---eee---------cCCeEEEEEeecccceEEEEEEEcC
Q psy16261 2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHEN-GS---LIH---------EGSRYHMWTEKFSSYKFYMRLYIGS 67 (158)
Q Consensus 2 i~~~~~~~~~~~g~~v~l~C~~~g~-p~p~i~W~~~~-~~---~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~ 67 (158)
+...+..+.+.+|+++.|.|..... ....+.|++.. +. .+. ..+|+.+.... .....+|.|.+
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~---~~~~~sL~I~~ 78 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQK---AQKSISLTISA 78 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEec---cCCEEEEEECC
Confidence 3456677889999999999998764 45679998751 11 111 12455544211 01134799999
Q ss_pred CCCCCCeEEEEEEEcC
Q psy16261 68 LSKSDFGTYKCNAKNT 83 (158)
Q Consensus 68 v~~~d~G~Y~C~a~n~ 83 (158)
++.+|+|.|.|.+...
T Consensus 79 ~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 79 LQLEDSAKYFCALSTL 94 (116)
T ss_pred CCHHHCEEEEEEEECC
Confidence 9999999999998853
No 147
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.45 E-value=5.5e-06 Score=49.60 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=52.3
Q ss_pred EEecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 10 GARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
.+..|+++.|.|.....+.| .++|...++....... ... -+|.+..+...|+|.++|.+....-..
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~----~~~--------ktL~~~qv~~qdSG~WtC~V~~~~k~~ 77 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN----QDK--------KTLNLVQLGPNDSGTWDCIVSVNSSEK 77 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc----CCc--------cEEEeceeCcccCCEEEEEEEECceEE
Confidence 57899999999999665555 9999877444332110 011 169999999999999999997654444
Q ss_pred EEEEEEEEe
Q psy16261 88 EGVIKVYNI 96 (158)
Q Consensus 88 ~~~~~l~v~ 96 (158)
.+.+.+.|.
T Consensus 78 ~~~~~V~Vl 86 (88)
T cd07694 78 TLKLDIKVL 86 (88)
T ss_pred EEEeeEEEE
Confidence 555555554
No 148
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.44 E-value=8.7e-06 Score=51.77 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCCEEEEeEEeecCC-----------CeeEEEcCC----C-----eee--ecC----------CeEEEEEeecccceEEE
Q psy16261 14 AAPLTLDCHVESYPK-----------PITFWTHEN----G-----SLI--HEG----------SRYHMWTEKFSSYKFYM 61 (158)
Q Consensus 14 g~~v~l~C~~~g~p~-----------p~i~W~~~~----~-----~~~--~~~----------~~~~~~~~~~~~~~~~~ 61 (158)
|.++.|.|...-.|. ..|.|++-. + ..+ ..+ +|..+.... ......
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~--~~~g~a 79 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHP--EDQGDA 79 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccC--CcCCce
Confidence 678999999986542 389997640 1 111 111 233322111 111246
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
+|.|.+++.+|.|.|.|.+.+........+.|.|.+
T Consensus 80 sL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 80 SLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 899999999999999999999888788888888765
No 149
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.43 E-value=8e-06 Score=50.57 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=31.7
Q ss_pred EEEEEEcCCCCCCCeEEEEEEEc-CCCceEEEEEEEE
Q psy16261 60 YMRLYIGSLSKSDFGTYKCNAKN-TLGGSEGVIKVYN 95 (158)
Q Consensus 60 ~~~l~i~~v~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 95 (158)
.++|.|.+++.+|.|.|.|.+.+ ..|+.+..+.|.|
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 46899999999999999999999 6887788888776
No 150
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.41 E-value=4.3e-06 Score=51.50 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCCEEEEeEEeecCC-CeeEEEcCCCe---eee---c----------CCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261 14 AAPLTLDCHVESYPK-PITFWTHENGS---LIH---E----------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76 (158)
Q Consensus 14 g~~v~l~C~~~g~p~-p~i~W~~~~~~---~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 76 (158)
|+++.|.|....... -.+.|+|..+. .+. . ..|+..... -...++|.|.+++.+|+|.|
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~sL~I~nv~~~D~G~Y 76 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSL----GLNSTSITIWNVTLEDEGCY 76 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCC----CCCccEEEEeCCceeeeEEE
Confidence 789999998755433 26899875221 110 0 012211111 11245799999999999999
Q ss_pred EEEEE-cCCCceEEEEEEEE
Q psy16261 77 KCNAK-NTLGGSEGVIKVYN 95 (158)
Q Consensus 77 ~C~a~-n~~g~~~~~~~l~v 95 (158)
.|.+. ...|.....+.|.|
T Consensus 77 ~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 77 KCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEEEeCCCCCeeeEEEEEE
Confidence 99987 45677677777765
No 151
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.40 E-value=7.4e-06 Score=50.79 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=49.8
Q ss_pred CEEEEeEEeecC---CCeeEEEcCCCe----ee---ec--C--------CeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261 16 PLTLDCHVESYP---KPITFWTHENGS----LI---HE--G--------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75 (158)
Q Consensus 16 ~v~l~C~~~g~p---~p~i~W~~~~~~----~~---~~--~--------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 75 (158)
++.|.|...... ...+.|+|.... .+ .. + +|.+.... .....++|.|.+++.+|+|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~---~~~~~~sL~I~nv~~sD~Gt 78 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETP---NPIADGALILRNAVQADEGK 78 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCC---CCCCceEEEEecCccccceE
Confidence 689999987554 347889885211 11 10 1 22222211 11124579999999999999
Q ss_pred EEEEEEc-CCCceEEEEEEEE
Q psy16261 76 YKCNAKN-TLGGSEGVIKVYN 95 (158)
Q Consensus 76 Y~C~a~n-~~g~~~~~~~l~v 95 (158)
|.|.+.+ ..|..++.+.|.|
T Consensus 79 Y~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 79 YKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEEeCCCCCeeeEEEEEe
Confidence 9999997 6776677777765
No 152
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.33 E-value=3.7e-06 Score=51.57 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=46.6
Q ss_pred eecCceEEEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 3 ~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
..++..+ +..|++++|.|.... ....+.|+|+ +..... .+ .... ......+.+.|..++.+|+|.|.|...
T Consensus 5 ~a~p~~v-V~~G~~VTL~C~~~~-~~~~f~l~k~-g~~~~~--~~-~~~~--~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 5 SAHPSPV-VPSGENVTLQCHSDI-RFDRFILYKE-GRSKPV--LH-LYEK--HHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EecCCCc-cCCCCeEEEEEecCC-CCCEEEEEEC-CCCCCc--ee-cccc--cCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 4445444 779999999998865 4567889998 433111 00 0000 001123479999999999999999875
No 153
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.30 E-value=1.1e-05 Score=49.66 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=48.9
Q ss_pred EEEecCCCEEEEeEEee-cCCCeeEEEcCCCe----ee--------ecCCeEEEEEeecccceEEEEEEEcCCCCCCCeE
Q psy16261 9 IGARLAAPLTLDCHVES-YPKPITFWTHENGS----LI--------HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~~g-~p~p~i~W~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 75 (158)
+.+.+|+++.|.|.... .....+.|++.... .+ ....|+.+.... ......|.|.+++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~---~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDP---DNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecC---CCCEEEEEEcCCCHHHCEE
Confidence 35788999999999865 34567899987211 11 012344443221 1123479999999999999
Q ss_pred EEEEEEcCC
Q psy16261 76 YKCNAKNTL 84 (158)
Q Consensus 76 Y~C~a~n~~ 84 (158)
|.|.+....
T Consensus 79 Y~C~~~~~~ 87 (98)
T cd05716 79 YWCGVGDDG 87 (98)
T ss_pred EEEEcccCC
Confidence 999887653
No 154
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.30 E-value=1.4e-05 Score=44.65 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=45.0
Q ss_pred EEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 17 v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
+.|.|.+.+.+...+.|+++ +......... ........+.....|.|.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKN-GKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEEC-CEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 46899999877889999998 5443322111 001111233345579999999999999999998875
No 155
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.28 E-value=9.1e-06 Score=50.98 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=45.6
Q ss_pred EEecCCCEEEEeEEeecC-CCeeEEEcCCCe----e----ee-c------------CCeEEEEEeecccceEEEEEEEcC
Q psy16261 10 GARLAAPLTLDCHVESYP-KPITFWTHENGS----L----IH-E------------GSRYHMWTEKFSSYKFYMRLYIGS 67 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~----~----~~-~------------~~~~~~~~~~~~~~~~~~~l~i~~ 67 (158)
.+.+|+++.|.|.+.+.. ...+.|++.... . +. . .+++....... .....|.|.+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~I~~ 78 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD---SSRYRLHINR 78 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC---CCEEEEEECC
Confidence 467899999999987643 457999876221 0 00 0 12333321110 0123699999
Q ss_pred CCCCCCeEEEEEEEcC
Q psy16261 68 LSKSDFGTYKCNAKNT 83 (158)
Q Consensus 68 v~~~d~G~Y~C~a~n~ 83 (158)
++.+|+|.|.|...+.
T Consensus 79 ~~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 79 VKPEDSGTYFCMTVGS 94 (107)
T ss_pred CCHHHCEEEEEeEcCC
Confidence 9999999999987643
No 156
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.25 E-value=3.4e-05 Score=52.52 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=58.7
Q ss_pred ceEEEecCCCEEEEeEEe-ecCCCeeEEEcCCCeeee---c--------CCeEEEEEeecccceEEEEEEEcCCCCCCCe
Q psy16261 7 QLIGARLAAPLTLDCHVE-SYPKPITFWTHENGSLIH---E--------GSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G 74 (158)
..+.+.+|+++.|.|... +...+.+.|+|.+..... . ..|+...... ...+.|.|.+++.+|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s----~~~StItIknVt~sDeG 98 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKS----FNESTILIKNVSLKDNG 98 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccC----CCcceEEEEeCChhhCe
Confidence 356788999999999985 656789999987322111 0 1233221111 12357999999999999
Q ss_pred EEEEEEEc-CCC-ceEEEEEEEEecc
Q psy16261 75 TYKCNAKN-TLG-GSEGVIKVYNIGY 98 (158)
Q Consensus 75 ~Y~C~a~n-~~g-~~~~~~~l~v~~~ 98 (158)
.|.|...- ..| ..+..+-|.|...
T Consensus 99 cY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 99 CYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEEEEEEecCCCCCceeEEEEEEEch
Confidence 99998764 455 5566666766654
No 157
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.24 E-value=1.3e-05 Score=49.54 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=48.3
Q ss_pred ecCceEEEecCCCEEEEeEEee-cCCCe--eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEE
Q psy16261 4 IPSQLIGARLAAPLTLDCHVES-YPKPI--TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCN 79 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~ 79 (158)
+.++...+.+|+.+.|.|.+.| .|.+. +.|+++ +..+.... +... .. ......++|.+. +.++|.| .|.|.
T Consensus 6 l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG-~~~l~~~~-~~~~-~~-~~~~~~stlt~~-~~r~D~g~~~sC~ 80 (100)
T cd05755 6 LSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRG-NETLSRQP-FGDN-TK-SPVNAPATITIT-VDREDHGANFSCE 80 (100)
T ss_pred EecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeC-CEEcccce-eccc-cC-CCceeEEEEEEe-cchhhCCcEEEEE
Confidence 3333344689999999999977 56665 699999 77664321 1110 00 111223456665 4455555 79999
Q ss_pred EEcCCCc
Q psy16261 80 AKNTLGG 86 (158)
Q Consensus 80 a~n~~g~ 86 (158)
|.+..+.
T Consensus 81 A~l~l~~ 87 (100)
T cd05755 81 TELDLRP 87 (100)
T ss_pred EEeccCc
Confidence 9987654
No 158
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.23 E-value=2.5e-05 Score=45.77 Aligned_cols=67 Identities=19% Similarity=0.312 Sum_probs=46.7
Q ss_pred EEEEeEEeec-CC-CeeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 17 LTLDCHVESY-PK-PITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 17 v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
+.|.|.+.|. |. ..+.|+++ +..+..+.. .......++.|...+.|.+......+...|+|.+....
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~-g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRN-GQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEEC-CEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 6899999996 44 48899999 775433321 12223344677778888887767777789999997653
No 159
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.23 E-value=2.9e-05 Score=47.76 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=50.7
Q ss_pred CCEEEEeEEeecC-CCeeEEEcCCC---eeee-c----C--------CeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261 15 APLTLDCHVESYP-KPITFWTHENG---SLIH-E----G--------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77 (158)
Q Consensus 15 ~~v~l~C~~~g~p-~p~i~W~~~~~---~~~~-~----~--------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 77 (158)
+++.|.|.....+ ...+.|.|... ..+. . + +|....... ...++|.|.+++.+|.|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~----~~d~sl~i~nv~~~D~G~Y~ 76 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYS----LLDATIMLENVGFSDIGVYI 76 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCC----CCccEEEEeCCCccccEEEE
Confidence 3689999987533 33888987522 1111 0 1 233332111 12458999999999999999
Q ss_pred EEEE-cCCCceEEEEEEEE
Q psy16261 78 CNAK-NTLGGSEGVIKVYN 95 (158)
Q Consensus 78 C~a~-n~~g~~~~~~~l~v 95 (158)
|.+. ...|+..+.+.|.|
T Consensus 77 C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 77 CKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEEeCCCCCeeEEEEEEE
Confidence 9975 56888888888876
No 160
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.21 E-value=1.8e-05 Score=50.61 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=49.2
Q ss_pred cCceEEEecCCCEEEEeEEeecC------CCeeEEEcCCCe----e-ee--c---------CCeEEEEEeecccceEEEE
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYP------KPITFWTHENGS----L-IH--E---------GSRYHMWTEKFSSYKFYMR 62 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p------~p~i~W~~~~~~----~-~~--~---------~~~~~~~~~~~~~~~~~~~ 62 (158)
.|+.+.+.+|+.+.|.|...... ...+.|++.... . .. . .+|+.+.. +.....++
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~---~~~~~~~s 81 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLG---DLGKKNCS 81 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEec---CCCCCEEE
Confidence 35667899999999999875322 246889976211 1 11 0 12333321 11123468
Q ss_pred EEEcCCCCCCCeEEEEEEEcC
Q psy16261 63 LYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 63 l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
|.|.+++.+|+|.|.|.+...
T Consensus 82 L~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccCChhhCeEEEEEEEcC
Confidence 999999999999999988664
No 161
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.18 E-value=3.6e-05 Score=50.52 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=48.2
Q ss_pred EecCCCEEEEeEEeec-CC-CeeEEEcCCCeeee-----cCC-eE-EEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 11 ARLAAPLTLDCHVESY-PK-PITFWTHENGSLIH-----EGS-RY-HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~-----~~~-~~-~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
...|+.+.|.|.+.|. |. ..+.|+++ +.... ... .+ ......++.|...+.|.+..-...+...|.|.+.
T Consensus 50 ~~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~ 128 (139)
T cd05771 50 SMIEEPQTLICHIAGYYPLDVQVEWTRE-PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVS 128 (139)
T ss_pred eecCCcEEEEEEECCCCCCCeEEEEEEC-CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEE
Confidence 3367889999999996 43 38999999 53211 111 11 1223344567777888887666566778999998
Q ss_pred cCC
Q psy16261 82 NTL 84 (158)
Q Consensus 82 n~~ 84 (158)
+..
T Consensus 129 H~~ 131 (139)
T cd05771 129 HVS 131 (139)
T ss_pred cCC
Confidence 753
No 162
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.17 E-value=3.4e-05 Score=46.52 Aligned_cols=72 Identities=17% Similarity=0.282 Sum_probs=45.6
Q ss_pred CCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 14 AAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 14 g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
|+.+.+.|.+ .++|.|.++|+.+ +..+...............+...+.|.+..-...+...++|.+.+..-.
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~-~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLD-GGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEET-TCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEEC-CCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 6799999966 5588899999999 5544111111222222244555567887655555667789999987543
No 163
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.12 E-value=1.9e-05 Score=49.26 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred EecCCCEEEEeEEeecCCCeeEEEcCCCe---e---ee-c--------------CCeEEEEEeecccceEEEEEEEcCCC
Q psy16261 11 ARLAAPLTLDCHVESYPKPITFWTHENGS---L---IH-E--------------GSRYHMWTEKFSSYKFYMRLYIGSLS 69 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~---~---~~-~--------------~~~~~~~~~~~~~~~~~~~l~i~~v~ 69 (158)
+.+|+++.|.|.........+.|++.... . +. . ..++...... ....|.|.+++
T Consensus 3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-----~~~~L~I~~~~ 77 (104)
T cd05720 3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-----NSFVLTLKNFQ 77 (104)
T ss_pred ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-----CEEEEEECCCC
Confidence 56899999999986655567999876211 1 11 0 1122221111 23479999999
Q ss_pred CCCCeEEEEEEEc
Q psy16261 70 KSDFGTYKCNAKN 82 (158)
Q Consensus 70 ~~d~G~Y~C~a~n 82 (158)
.+|+|.|.|.+.+
T Consensus 78 ~sDsgtY~Ca~~~ 90 (104)
T cd05720 78 KENEGYYFCSVAS 90 (104)
T ss_pred HHHCEEEEEEEcc
Confidence 9999999998764
No 164
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.06 E-value=6.5e-05 Score=45.86 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=45.1
Q ss_pred CCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 14 AAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 14 g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
++.+.|.|.+.|. |.+ .++|.++ +....... ........++.|...+.|.+..- +...|+|.+.+..-
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~-g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRD-GEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEEC-CEECcccccccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCCC
Confidence 6789999999995 444 8899999 64322221 11233344456666667777653 67899999987643
No 165
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.05 E-value=0.00013 Score=46.10 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=47.3
Q ss_pred EecCCCEEEEeEEeecCC--CeeEEEcCCCeeeecCCeEEEEEeec-ccceEEEEEEEcCCCCCCCe-EEEEEEEcCC
Q psy16261 11 ARLAAPLTLDCHVESYPK--PITFWTHENGSLIHEGSRYHMWTEKF-SSYKFYMRLYIGSLSKSDFG-TYKCNAKNTL 84 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~~ 84 (158)
...|+.+.|.|.+.|.-+ ..++|++| +..+.... ......++ +.|...+.|.+.. ...|.| .|.|.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kn-g~~~~~~~-~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKN-GNELSAEQ-PNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEEC-CEECcccc-cceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 446888999999999543 37899999 87765432 12222333 3677777787775 344444 4999998864
No 166
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.05 E-value=6.8e-05 Score=46.11 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=47.4
Q ss_pred CCEEEEeEEee-cCCCeeEEEcCCC---eeee-----cC--------CeEEEEEeecccceEEEEEEEcCCCCCCCeEEE
Q psy16261 15 APLTLDCHVES-YPKPITFWTHENG---SLIH-----EG--------SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77 (158)
Q Consensus 15 ~~v~l~C~~~g-~p~p~i~W~~~~~---~~~~-----~~--------~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 77 (158)
+.+.|.|.... .....+.|.|.++ ..+. .+ +|+...... ...++|.|.+++.+|.|.|.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~----~~d~sI~i~nvt~~D~G~Y~ 76 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNST----REDMSLSFNNATEEDVGLYC 76 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCC----CCccEEEEcCCCcccCEEEE
Confidence 46889999854 2345788987522 1111 01 233222111 12358999999999999999
Q ss_pred EEEEc-CCCceEEEEEE
Q psy16261 78 CNAKN-TLGGSEGVIKV 93 (158)
Q Consensus 78 C~a~n-~~g~~~~~~~l 93 (158)
|.+.. ..|...+.+.+
T Consensus 77 C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 77 CSLVTYPQGSWEKVIEV 93 (96)
T ss_pred EEEEeCCCCCeEEEEEE
Confidence 99876 47777776665
No 167
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.99 E-value=0.00018 Score=42.85 Aligned_cols=69 Identities=22% Similarity=0.364 Sum_probs=48.7
Q ss_pred cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCCeEEEEE-eecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGSRYHMWT-EKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
.++.+.|.|.+.+. |.. .+.|+++ +..+.......... ..++.|...+.|.+. ..+...|.|.+.....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~-~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKN-GKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEET-TEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEec-cceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 37889999999995 433 6889999 77765543332222 345678888888888 4445579999987643
No 168
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.98 E-value=8.5e-05 Score=47.38 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=48.4
Q ss_pred cCceEEEecCCCEEEEeEEeecC--CCeeEEEcCCC-e-e--e---ec-----------CCeEEEEEeecccceEEEEEE
Q psy16261 5 PSQLIGARLAAPLTLDCHVESYP--KPITFWTHENG-S-L--I---HE-----------GSRYHMWTEKFSSYKFYMRLY 64 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~p--~p~i~W~~~~~-~-~--~---~~-----------~~~~~~~~~~~~~~~~~~~l~ 64 (158)
.|..+.+.+|+++.|.|...+.. ...+.|++... . + + .. ..|+....... .....|.
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~---~~~~~L~ 79 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTS---KSTVYLQ 79 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEcc---CCEEEEE
Confidence 45566789999999999986543 45789987521 1 1 1 00 12333332210 0123699
Q ss_pred EcCCCCCCCeEEEEEEEc
Q psy16261 65 IGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 65 i~~v~~~d~G~Y~C~a~n 82 (158)
|.+++.+|+|.|.|.+..
T Consensus 80 I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 80 LNSLTPEDTAVYYCARGL 97 (117)
T ss_pred ECCCCHHHCEEEEEEEEc
Confidence 999999999999998765
No 169
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.92 E-value=0.00012 Score=44.90 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=46.6
Q ss_pred cCCCEEEEeEEeec-CC-CeeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 13 LAAPLTLDCHVESY-PK-PITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 13 ~g~~v~l~C~~~g~-p~-p~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
..+.+.|.|.+.|. |. -.++|.++ +..+..+ .........++.|...+.|.+..-.-.+...|.|.+......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~d-g~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~ 88 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVD-GQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT 88 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEEC-CEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence 45679999999995 43 37789999 7765332 111122223346777777877644434567899999876433
No 170
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.86 E-value=0.00026 Score=43.26 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=46.1
Q ss_pred cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.|+...|.|.+.|.-++ .++|+++ |..+...........++..|...+.|.+. ..+...|.|.+...
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~d-g~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~ 82 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKN-GVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHN 82 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEEC-CEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEEC
Confidence 45567899999995444 6789999 87765222233445555667766777766 45666799999875
No 171
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.80 E-value=0.00016 Score=44.53 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=47.2
Q ss_pred cCceEEEecCCCEEEEeEEeec-CCC--eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 5 PSQLIGARLAAPLTLDCHVESY-PKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 5 ~~~~~~~~~g~~v~l~C~~~g~-p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+|....+..++.+.|.|.+.|. -++ .++|.++++........ ......++.|...+.|.+..-.-.+.-.|.|.+.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 3333335568899999999998 333 67899983333221111 1122333557666777776433233446999998
Q ss_pred cCC
Q psy16261 82 NTL 84 (158)
Q Consensus 82 n~~ 84 (158)
...
T Consensus 84 H~~ 86 (96)
T cd07696 84 HPD 86 (96)
T ss_pred CCC
Confidence 764
No 172
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.80 E-value=0.00075 Score=41.31 Aligned_cols=69 Identities=25% Similarity=0.373 Sum_probs=46.3
Q ss_pred ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecC-CeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEG-SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
..++.+.|.|.+.|.-++ .++|+++ +..+... ........++..|...+.|.+.. .+...|+|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKN-GQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEEC-CeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence 357889999999995444 6789999 7765443 11233334444576667776653 45568999998764
No 173
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=97.77 E-value=5.2e-05 Score=49.73 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=34.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF 99 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 99 (158)
+|.|.+++..|.|.|.|.+.+..|.....+.|.|...|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P 39 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPP 39 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCC
Confidence 69999999999999999999988888888888887654
No 174
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.76 E-value=0.00051 Score=42.15 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=43.3
Q ss_pred CCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 14 AAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 14 g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
.....+.|.+ .|.|.+.|+|+++ ... ..........++.+...+.|.+.-....+...|+|.+.+..-..
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~-~~~---~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETT-LGG---EAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeC-CCC---cceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 3456888998 6789999999987 211 11111112221335556677775555556667999999976433
No 175
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.76 E-value=9.8e-05 Score=45.76 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=47.8
Q ss_pred EecCCCEEEEeEEeec-C-CCeeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 11 ARLAAPLTLDCHVESY-P-KPITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
...++.+.|.|.+.|. | ...+.|+++ +..+..+.. .......++.|...+.|.+..-.-.+...|+|.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~-g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVD-GATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEEC-CEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 3457789999999994 4 337889999 776643311 11222334567777778775554445678999998764
No 176
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.74 E-value=0.0006 Score=41.76 Aligned_cols=67 Identities=21% Similarity=0.428 Sum_probs=45.8
Q ss_pred cCCCEEEEeEEeec-CCC-eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 13 LAAPLTLDCHVESY-PKP-ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 13 ~g~~v~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.++...|.|.+.|. |.. .++|.++ |..+..+. .......+++.|...+.|.+.. .+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~-g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKN-GVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEEC-CeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeC
Confidence 35568999999994 433 6789999 77665432 2233445556677777887754 3456899999875
No 177
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.72 E-value=0.00019 Score=41.99 Aligned_cols=61 Identities=23% Similarity=0.398 Sum_probs=38.3
Q ss_pred CEEEEeEEeecCCC--eeEEEcCCC-e---eee-------------cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEE
Q psy16261 16 PLTLDCHVESYPKP--ITFWTHENG-S---LIH-------------EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76 (158)
Q Consensus 16 ~v~l~C~~~g~p~p--~i~W~~~~~-~---~~~-------------~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 76 (158)
++.|.|.......+ .+.|++... . .+. ...|+...... -....+|.|.+++.+|+|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~---~~~~~~L~i~~~~~~D~G~Y 77 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDT---SKNDVSLTISNLRVEDTGTY 77 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecC---cCCEEEEEEcCCCHHHCEEE
Confidence 47899998776554 788987521 1 111 01333333221 01234799999999999999
Q ss_pred EEE
Q psy16261 77 KCN 79 (158)
Q Consensus 77 ~C~ 79 (158)
.|.
T Consensus 78 ~C~ 80 (81)
T smart00406 78 YCA 80 (81)
T ss_pred EEc
Confidence 995
No 178
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.72 E-value=9e-05 Score=46.11 Aligned_cols=73 Identities=18% Similarity=0.314 Sum_probs=45.9
Q ss_pred EecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeEE--EEEe--ecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 11 ARLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYH--MWTE--KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
+..++.+.|.|.+.|..++ .++|+++ +..+....... .... +++.|...+.|.+..-.-.+...|+|.+....
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~-g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQN-GQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEEC-CEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 3457889999999995544 5689999 77654322111 1111 13557777778774433334557999988753
No 179
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.69 E-value=0.00045 Score=42.48 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=43.4
Q ss_pred cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.+..+.|.|.+.|.-++ .++|.++ |..+..+.. ......+ +.|...+.|.+..-.. ...|+|.+...
T Consensus 15 ~~~~~tL~C~a~gFyP~~I~v~W~kn-g~~~~~~~~~~~~~~~~-dty~~~S~L~vt~~~~--~~~ysC~V~H~ 84 (96)
T cd07697 15 KQGQGIYLCLLENFFPDVIQVHWREG-NSPSILGSQKSEKDKDN-DVYSTTSWLTVTKDSL--GKKFRCIYKHE 84 (96)
T ss_pred cCCCEEEEEEEEEEeCCCeEEEEEEC-CEECcCCeEeccEecCC-CEEEEEEEEEECchhC--CCeEEEEEEEC
Confidence 45678999999995444 6789999 776544322 2223333 3676677787764422 23499999874
No 180
>PHA03376 BARF1; Provisional
Probab=97.66 E-value=0.0044 Score=42.55 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=47.0
Q ss_pred eEEEecCCCEEEEeEEeec---CCCeeEEEcCC---Ce-eeec------------CCeEEEEEeecccceEEEEEEEcCC
Q psy16261 8 LIGARLAAPLTLDCHVESY---PKPITFWTHEN---GS-LIHE------------GSRYHMWTEKFSSYKFYMRLYIGSL 68 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~---p~p~i~W~~~~---~~-~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~v 68 (158)
.+.+..|+++.|.|..... +.-.+.|+|.+ .. .+.. ..++.+.... .+.+|.|.++
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-----gnvsLvI~~l 94 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-----NTFFLVVTAA 94 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-----CeEEEEEEee
Confidence 4557789999999987632 33478899941 11 1111 1222221111 2347999999
Q ss_pred CCCCCeEEEEEEEcCCC
Q psy16261 69 SKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 69 ~~~d~G~Y~C~a~n~~g 85 (158)
+.+|.|.|.|.++....
T Consensus 95 ~lSDdGtY~C~fQkge~ 111 (221)
T PHA03376 95 NISHDGNYLCRMKLGET 111 (221)
T ss_pred eecCCceEEEEEEcCCC
Confidence 99999999999986543
No 181
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.62 E-value=0.0014 Score=40.22 Aligned_cols=71 Identities=6% Similarity=-0.012 Sum_probs=43.0
Q ss_pred CCEEEEeEEe-ecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261 15 APLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 15 ~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 89 (158)
....+.|.+. |.|.+.|+|+++ .... .........+..+...+.|.+.--...|...|+|.+.+..-....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~-~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~ 87 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST-LGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQ 87 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC-CCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 3578899875 688889999987 2211 111111111123444567777555555667799999997644433
No 182
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.52 E-value=0.00061 Score=43.31 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=48.1
Q ss_pred ecCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCeE--EEEEeecccceEEEEEEEcCCCCCC-CeEEEEEEEcCCCc
Q psy16261 12 RLAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSRY--HMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCNAKNTLGG 86 (158)
Q Consensus 12 ~~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~n~~g~ 86 (158)
..+..+.|.|.+.|.-+. .+.|+++ +..+..+... ......++.|...+.|.+..-.-.+ ...|.|.+......
T Consensus 16 ~~~~~~tL~Cla~gFyP~~I~V~W~kn-g~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 16 RNKRKATLVCLATGFYPDHVSLSWKVN-GKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred ccCCCcEEEEEEEeEeCCCcEEEEEEC-CEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 356679999999995444 7889999 7766543211 1112212467777788877554333 45799999876444
Q ss_pred eE
Q psy16261 87 SE 88 (158)
Q Consensus 87 ~~ 88 (158)
..
T Consensus 95 ~~ 96 (115)
T cd05769 95 DT 96 (115)
T ss_pred cc
Confidence 43
No 183
>PHA02633 hypothetical protein; Provisional
Probab=97.38 E-value=0.00095 Score=37.15 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEeccC
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF 99 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~ 99 (158)
.|.|.++..+|+|.|.|..+|..-....++.|.|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 59999999999999999999986666777777776543
No 184
>KOG3515|consensus
Probab=97.25 E-value=0.00026 Score=57.77 Aligned_cols=78 Identities=24% Similarity=0.306 Sum_probs=56.2
Q ss_pred EEecCCCEEEEeEEeecCCC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce-
Q psy16261 10 GARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS- 87 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~- 87 (158)
.+.+|+.|.|.|.+.++|++ .+.|++. ..... .|+...... .|.+....+...+.|.|.+.|..+..
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~-~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~c~a~ns~~~~~ 86 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHS-TSGEH--GRYATIADP--------TLVTTGDVRDTVAELNCRAFNSVGMPS 86 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEec-Ccccc--cccccccCC--------ceeeecchhhhhhhhhhhhcccccCce
Confidence 67899999999999987755 8999999 55443 333333333 68888888888899999999986654
Q ss_pred EEEEEEEEecc
Q psy16261 88 EGVIKVYNIGY 98 (158)
Q Consensus 88 ~~~~~l~v~~~ 98 (158)
...+.+.+.+.
T Consensus 87 ~~~~~l~v~~~ 97 (741)
T KOG3515|consen 87 RCPMILDVDYP 97 (741)
T ss_pred ecceeeccccC
Confidence 33444444443
No 185
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.24 E-value=0.0033 Score=38.56 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=43.0
Q ss_pred cCCCEEEEeEEeecCCC--eeEEEcCCCeeeecCCe-EEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 13 LAAPLTLDCHVESYPKP--ITFWTHENGSLIHEGSR-YHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 13 ~g~~v~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
..+.+.|.|.+.|.-+. .++|.++ +.. ..+.. .......++.|...+.|.+..-.-.....|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~-g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSG-SNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeEC-CEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 45679999999995443 6789999 775 33211 11111213567767777766432122456999998753
No 186
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.22 E-value=0.006 Score=38.60 Aligned_cols=74 Identities=9% Similarity=0.037 Sum_probs=46.8
Q ss_pred ecCceEEEecCCCEEEEeEEeecCCC---eeEEEcCCCeeee--------------cCCeEEEEEeecccceEEEEEEEc
Q psy16261 4 IPSQLIGARLAAPLTLDCHVESYPKP---ITFWTHENGSLIH--------------EGSRYHMWTEKFSSYKFYMRLYIG 66 (158)
Q Consensus 4 ~~~~~~~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~ 66 (158)
+++....+..|..+.|.|.+.|.... .+.|.+.....+. ...++.+...... ....|.|.
T Consensus 3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~---ntv~L~l~ 79 (115)
T cd05721 3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGN---EQVNFTLQ 79 (115)
T ss_pred eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCC---CEEEEEEc
Confidence 34445567889999999999775433 5778875211110 1123333322211 23479999
Q ss_pred CCCCCCCeEEEEEE
Q psy16261 67 SLSKSDFGTYKCNA 80 (158)
Q Consensus 67 ~v~~~d~G~Y~C~a 80 (158)
+++.+|.+.|.|..
T Consensus 80 ~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 80 NLRANQTDIYFCKI 93 (115)
T ss_pred CCCHHHCeEEEEEe
Confidence 99999999999965
No 187
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.09 E-value=0.001 Score=47.64 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=42.9
Q ss_pred CCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 28 KPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 28 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
-|.+.|.-.++..+....++.++..+ .|.+.+...+++|.|+|..+...
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG--------~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETG--------KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCc--------eEEeeccccccCCceEEEEEEEe
Confidence 57889998878888888899999888 89999999999999999987543
No 188
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.01 E-value=0.0052 Score=35.03 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=35.5
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEc
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n 82 (158)
...|.|.|.. ...+.|+++ ....... .. .|.+..+.....|.|.|.+.+
T Consensus 6 ~~~V~L~C~~----~tsi~W~kG-~~~~~~~-------~~--------tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG----ATNITWKKG-KEILEVS-------NT--------LLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC----CCcEEEecC-ccccccc-------cc--------EEeccCcccCCCcceEecCcc
Confidence 4468999966 245999995 5543222 11 588888888999999998877
No 189
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.90 E-value=0.024 Score=34.85 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=46.4
Q ss_pred eEEEecCCCEEE-EeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 8 LIGARLAAPLTL-DCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 8 ~~~~~~g~~v~l-~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
.+.+.+|+.+.+ .|.+ .|.|.+.|+|+.+ ..... .........+.+...+.+.+..-...|.-.++|.+....-
T Consensus 10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~-~~G~~---~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 10 SLLIDGGNGTTLAACCAAEGRPAADVTWETN-VYGTS---ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred eeEeecCcceeEEEEEccCCccCCEeEEeCC-CCCcc---ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 345778888888 7775 6688889999977 32211 1111111112444556677765556677779999988743
No 190
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.88 E-value=0.0034 Score=38.79 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=42.6
Q ss_pred EecCCCEEEEeEEeecC--CC-eeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 11 ARLAAPLTLDCHVESYP--KP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p--~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
...+..+.|.|.+.+.- .. .+.|.++ +.. ...........++.|...+.|.+..-.-.....|+|.+....
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~-g~~--~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPS-GGK--EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEEC-Ccc--CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 33577899999999944 32 7889999 543 111111112223567777778766322222345999998763
No 191
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.82 E-value=0.0027 Score=35.88 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=34.2
Q ss_pred EecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
...|.+|.|.|...... +.|.++ ...+..... .+...+-. ++.|.|.|.+.+.
T Consensus 4 sisGTtVtlTCP~~~~~---i~W~~n-~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGDD---IKWKKN-DQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCCC---ceEEeC-CccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence 35688999999876332 999999 544332211 12223333 7899999998654
No 192
>KOG1480|consensus
Probab=96.47 E-value=0.0015 Score=53.27 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=60.1
Q ss_pred EEEecCCCEEEEeEE-eecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 9 IGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
..+..+..+.+.|.. .+.|...++|+++ +..+.+...+...... .++|.-+...|.|+|+|.+.|.++..
T Consensus 139 q~V~~~s~~~l~cr~pe~~paae~~w~k~-e~~~~pd~n~~~~~d~--------~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 139 QEVQEETTLQLPCRPPEGDPKAEVEWLKN-EVVIDPDANVIRASDH--------NLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred heecccccccccccCcccchhhhhhcccc-CCCCCccccchhhhcC--------Cccccchhhhhcccceeeeehhhccc
Confidence 346667778888764 7788889999999 7777665444333333 68999999999999999999998876
Q ss_pred ---EEEEEEEEeccCC
Q psy16261 88 ---EGVIKVYNIGYFG 100 (158)
Q Consensus 88 ---~~~~~l~v~~~~~ 100 (158)
...+.+.|.....
T Consensus 210 ~~~~~~v~vyv~ggws 225 (909)
T KOG1480|consen 210 KSDPATVQVYVNGGWS 225 (909)
T ss_pred cccceEEEEEEcCccc
Confidence 3345555555443
No 193
>KOG4597|consensus
Probab=96.22 E-value=0.0087 Score=46.41 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=59.0
Q ss_pred EecCCCEEEEeEEeecCCCeeEEEcC--CCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261 11 ARLAAPLTLDCHVESYPKPITFWTHE--NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p~p~i~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 88 (158)
+-++++..++|-+.|.+.+.++|.+- ++..+..... +.. +.-.+..++.|.|-+-...|+|.|+|.+.+..|...
T Consensus 208 vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~n-q~~--e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 208 VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPN-QTV--ENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred cccchhhcccccccCCcCceeeeehhhccccceeecCc-ccc--CCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 55788999999999999999999643 0221111100 000 001122345799999999999999999999999988
Q ss_pred EEEEEEEecc
Q psy16261 89 GVIKVYNIGY 98 (158)
Q Consensus 89 ~~~~l~v~~~ 98 (158)
..+.+.+...
T Consensus 285 rdv~c~s~~g 294 (560)
T KOG4597|consen 285 RDVPCSSVKG 294 (560)
T ss_pred ccceeeeecc
Confidence 8877765543
No 194
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=96.05 E-value=0.0034 Score=37.75 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=35.5
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDP 155 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 155 (158)
.+.+......|.|.| .|.|.|..|.......|.|.++|..|
T Consensus 48 ~L~I~~~~~~D~G~Y-------tC~A~N~~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 48 TLQILPTVREDSGFF-------SCHAINSYGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred EEEECCCCcccCEEE-------EEEEEcCCCcceEEEEEEEeCCCCCC
Confidence 455556667889999 99999999999999999999998877
No 195
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=95.74 E-value=0.0058 Score=37.56 Aligned_cols=42 Identities=12% Similarity=0.076 Sum_probs=36.4
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCCCCCC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPV 156 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 156 (158)
.+.+......|.|.| +|.+.|..|....++.|.|-++|++|+
T Consensus 57 ~L~I~~~~~~D~G~Y-------tc~a~N~~G~~~~~~~l~V~~~P~pP~ 98 (98)
T cd05762 57 KLTITEGQQEHCGCY-------TLEVENKLGSRQAQVNLTVVDKPDPPA 98 (98)
T ss_pred EEEECCCChhhCEEE-------EEEEEcCCCceeEEEEEEEecCCCCCC
Confidence 345566678889999 999999999999999999989998884
No 196
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.33 E-value=0.01 Score=38.37 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=44.1
Q ss_pred EecCCCEEEEeEEeec-----CCCeeEEEcCCCeeee-c-CCeEEEEEee------cccceEEEEEEEcCCCCCCCeEEE
Q psy16261 11 ARLAAPLTLDCHVESY-----PKPITFWTHENGSLIH-E-GSRYHMWTEK------FSSYKFYMRLYIGSLSKSDFGTYK 77 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~-~-~~~~~~~~~~------~~~~~~~~~l~i~~v~~~d~G~Y~ 77 (158)
..-.++|.|+|.+... +.-.+.|..+ +..+. . +......... .......++|.|.....- .|+|+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~-~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFK-NKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEET-TEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEEC-CeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 4457889999999652 2236889988 55432 1 1111110000 012223446777764444 89999
Q ss_pred EEEEcCCCceEEEEEEEEe
Q psy16261 78 CNAKNTLGGSEGVIKVYNI 96 (158)
Q Consensus 78 C~a~n~~g~~~~~~~l~v~ 96 (158)
|.+.......+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999887777777777653
No 197
>PHA02982 hypothetical protein; Provisional
Probab=95.20 E-value=0.14 Score=35.80 Aligned_cols=73 Identities=15% Similarity=0.378 Sum_probs=48.5
Q ss_pred EEecCCCEEEEeEEeecC-CCeeEEEcCCCeeeecC------------------CeEEEEEeecccceEEEEEEEcCCCC
Q psy16261 10 GARLAAPLTLDCHVESYP-KPITFWTHENGSLIHEG------------------SRYHMWTEKFSSYKFYMRLYIGSLSK 70 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p-~p~i~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~i~~v~~ 70 (158)
....++.+.|.|...... ..+..|+++++..+... ..+.++..+ ..|+|+|+++..
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g-----~~STLTIkk~~i 109 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG-----NSSTFTMKKPDP 109 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec-----cceeEEeccCCc
Confidence 345689999999953322 34677998766554310 112222222 246899999999
Q ss_pred CCCeEEEEEEEcCCCce
Q psy16261 71 SDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 71 ~d~G~Y~C~a~n~~g~~ 87 (158)
+..|-|+|.+....+..
T Consensus 110 ~N~GCYtc~~ks~~~k~ 126 (251)
T PHA02982 110 QNLGCFTCEAKDAEGKE 126 (251)
T ss_pred ccCCceEEEEecCCCch
Confidence 99999999998865443
No 198
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=94.70 E-value=0.18 Score=31.06 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=38.4
Q ss_pred EecCCCEEEEeEEee-cCC--CeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCe-EEEEEEEcCC
Q psy16261 11 ARLAAPLTLDCHVES-YPK--PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG-TYKCNAKNTL 84 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G-~Y~C~a~n~~ 84 (158)
..+|..+.+.|.+.+ .|. ..+.|+++ ...+............ ......+.+.|.- .++|.| +|.|.|.-.+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG-~~~l~~~~f~~~~~~k-s~~~~~~~vtftp-treD~g~~fsC~A~L~l 86 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKG-ETLLPSKSFLEDMDKK-SLETKSLEVTFTP-TIEDIGKVLVCRAKLHI 86 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecC-cceecccccccccccC-CCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence 468999999999976 444 36889887 5544332111000000 0000011344443 366666 7999987543
No 199
>PHA03042 CD47-like protein; Provisional
Probab=94.64 E-value=0.31 Score=35.47 Aligned_cols=73 Identities=14% Similarity=0.264 Sum_probs=46.6
Q ss_pred EecCCCEEEEeEEeec-----CCCeeEEEcCCCeeee-cCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCC
Q psy16261 11 ARLAAPLTLDCHVESY-----PKPITFWTHENGSLIH-EGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTL 84 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 84 (158)
..-.+++.++|....- ..-.+.|..+ +..+. .++. .. ++|.+.--. .-.|+|+|.|.+..
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~-~~~If~~n~t-n~-----------aSL~~~f~~-~l~GNYTCEv~~l~ 93 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFN-NKVIFKKNNT-NT-----------SSLKFNFSK-NLSGNYTCEAINKF 93 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeC-CeeEEEecCC-cc-----------eEEEEeccc-cCCCceeEEEeecc
Confidence 4457889999998653 3457899999 55443 2221 11 256554333 33799999999876
Q ss_pred CceEEEEEEEEec
Q psy16261 85 GGSEGVIKVYNIG 97 (158)
Q Consensus 85 g~~~~~~~l~v~~ 97 (158)
......+.|....
T Consensus 94 n~gk~~IeLk~~~ 106 (286)
T PHA03042 94 NKIKNTIELQYVI 106 (286)
T ss_pred cCccEEEEEEEEE
Confidence 6666666665553
No 200
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=94.28 E-value=0.38 Score=30.01 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=27.2
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCce-EEEEEEEEe
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGS-EGVIKVYNI 96 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 96 (158)
.|.|+.++..|+|.|.-.+.+..|.. ...+.+.|.
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 69999999999999999999999987 334666553
No 201
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=94.08 E-value=0.37 Score=29.41 Aligned_cols=72 Identities=10% Similarity=0.192 Sum_probs=40.9
Q ss_pred EEEEeE-EeecCCCeeEEEcCC-CeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEE
Q psy16261 17 LTLDCH-VESYPKPITFWTHEN-GSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93 (158)
Q Consensus 17 v~l~C~-~~g~p~p~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 93 (158)
+.-.|. +.|.|+..|+|..+- |.. .++.....++....++.+.+--....|.-..+|.+....-....++.|
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L 96 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL 96 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence 455788 688999999997541 111 111111221233344455555555667777899998764444444544
No 202
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.74 E-value=0.81 Score=27.04 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCeEEEEEE-EcCCCceEEEEEEEE
Q psy16261 62 RLYIGSLSKSDFGTYKCNA-KNTLGGSEGVIKVYN 95 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 95 (158)
.+........|+|.+.|.| .+..-.......|.+
T Consensus 44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4667778889999999999 555433444444443
No 203
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.26 E-value=1.1 Score=27.06 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=40.6
Q ss_pred ceEEEecCCCEEEEeEEeec-----CCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEE
Q psy16261 7 QLIGARLAAPLTLDCHVESY-----PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCN 79 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 79 (158)
+...+..|+.+...|..... ....+.|..+ +. ..+.++++..... .+++++.+......-.|-|.
T Consensus 11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln-~~-~iP~~qy~~in~~------~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLN-GE-KIPGSQYRVINDT------VSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECS-SC-ESTCGCEEEESTT------EEEEEESS--SSEEEEEEEE
T ss_pred CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEEC-CE-ECChhHcceeCCe------EEEEEEccCCCCCceEEEEE
Confidence 33348899999999998542 4558999998 66 4445555555443 35788887766555556565
No 204
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=93.25 E-value=0.048 Score=32.47 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=30.9
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS 152 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (158)
+.+......|.|.| .|.|.|..|....++.|.|-.||
T Consensus 49 L~I~~v~~~D~G~Y-------tC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 49 LVIVNAQLSHAGTY-------TCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred EEEccCChhhCeEE-------EEEEecCCCCEEEEEEEEEECCC
Confidence 44555667889999 99999999999999999986654
No 205
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=92.79 E-value=0.065 Score=31.12 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=28.0
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.|.|..|....++.|.|
T Consensus 43 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 43 LLIQGATKEDAGWY-------TVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred EEECCCCHHHCEEE-------EEEEEcCCCEEEEEEEEeC
Confidence 34566778899999 9999999999999988764
No 206
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=91.83 E-value=0.092 Score=31.04 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=31.7
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS 152 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (158)
.+.+......+.|.| .|.+.|..|....++.|.|-.||
T Consensus 48 ~L~I~~v~~~D~G~Y-------~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 48 DLMIRNAQLKHAGKY-------TCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred eEEEccCCHHhCeee-------EEEEecCCCcEEEEEEEEEECCC
Confidence 355666677899999 99999999999999999986664
No 207
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=91.82 E-value=0.1 Score=30.35 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=28.0
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|.....+.|.|
T Consensus 43 L~I~~~~~~D~G~Y-------~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 43 LLIKNVNKKDAGWY-------TVSAVNEAGVATCHARLDV 75 (75)
T ss_pred EEECCCChhhCEEE-------EEEEEcCcCeEEEEEEEeC
Confidence 45566778899999 9999999999999988764
No 208
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=91.70 E-value=1.4 Score=33.28 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=38.1
Q ss_pred CEEEEeEEeecCCC--eeEEEcC--------CC---eeeecCC---------eEEEEEeec-ccceEEEEEEEcCCCCCC
Q psy16261 16 PLTLDCHVESYPKP--ITFWTHE--------NG---SLIHEGS---------RYHMWTEKF-SSYKFYMRLYIGSLSKSD 72 (158)
Q Consensus 16 ~v~l~C~~~g~p~p--~i~W~~~--------~~---~~~~~~~---------~~~~~~~~~-~~~~~~~~l~i~~v~~~d 72 (158)
.+.|.|.|.|.-+. .++|.++ .+ ..+..+. ...+...++ +.|+....+. +...+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~---v~~~~ 292 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVR---VPTDM 292 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEE---eCCCC
Confidence 47999999996554 6679998 12 1111110 011344444 3565555554 34556
Q ss_pred CeEEEEEEEcC
Q psy16261 73 FGTYKCNAKNT 83 (158)
Q Consensus 73 ~G~Y~C~a~n~ 83 (158)
...|+|.+...
T Consensus 293 ~~~Y~C~V~Hs 303 (338)
T PHA02865 293 SNQIVCVVFHS 303 (338)
T ss_pred CCCcEEEEEeC
Confidence 66799999875
No 209
>PHA03052 Hypothetical protein; Provisional
Probab=91.36 E-value=1.1 Score=25.49 Aligned_cols=35 Identities=29% Similarity=0.525 Sum_probs=27.2
Q ss_pred CceEEEecCCCEEEEeEEeecC---CCeeEEEcCCCeee
Q psy16261 6 SQLIGARLAAPLTLDCHVESYP---KPITFWTHENGSLI 41 (158)
Q Consensus 6 ~~~~~~~~g~~v~l~C~~~g~p---~p~i~W~~~~~~~~ 41 (158)
|..+.+..|+.+.+.|.+.-.+ .+.+.|..| +..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N-~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISN-GMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeC-CcEE
Confidence 3667788999999999995543 347889988 7666
No 210
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=91.29 E-value=0.064 Score=32.20 Aligned_cols=33 Identities=6% Similarity=-0.058 Sum_probs=27.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.|.|..|....++.|+|
T Consensus 57 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 57 LYLRNVSFDDAGEY-------TCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred EEEeccccccCcEE-------EEEeecccCcccCCEEEEe
Confidence 34444567899999 9999999999999998876
No 211
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=91.18 E-value=0.1 Score=31.21 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=31.8
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCCC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPS 152 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (158)
.+.+......+.|.| +|.+.|..+....++.|.|-.||
T Consensus 48 ~L~I~nv~~~dsG~Y-------tC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 48 DLMIRSIQLKHAGKY-------VCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred cEEEecCCHHHCEEE-------EEEEEcccCceEEEEEEEEecCC
Confidence 355566677888999 99999999999999999987665
No 212
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=90.88 E-value=0.13 Score=29.61 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=28.0
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.|+|
T Consensus 41 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 41 LEILNITKLDEGSY-------TCFAENNRGKANSTGVLSV 73 (73)
T ss_pred EEECcCChhHCEEE-------EEEEECCCCceeEEEEEEC
Confidence 55666678889999 9999999999999988864
No 213
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=90.21 E-value=0.18 Score=29.12 Aligned_cols=33 Identities=9% Similarity=0.048 Sum_probs=27.8
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+.+....|.|.| .|.+.|..|....++.|.|
T Consensus 43 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 43 LLIQNANKEDAGWY-------TVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred EEECCCCcccCEEE-------EEEEEcCCCcEEEEEEEeC
Confidence 45567778999999 9999999999999887754
No 214
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=89.65 E-value=0.11 Score=31.19 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=29.5
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+.+......|.|.| .|.+.|..|....+++|.|
T Consensus 56 ~L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 56 VLYLRNVTFEDAGEY-------TCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred EEEEccCCHHHCEEE-------EEEEEeCCCcccceEEEEE
Confidence 456677788899999 9999999999999998875
No 215
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=88.29 E-value=0.24 Score=29.54 Aligned_cols=36 Identities=11% Similarity=0.098 Sum_probs=30.1
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccCCCC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDP 151 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 151 (158)
+.+......|.|.| .|.+.|..|.....+.|.|.+.
T Consensus 49 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V~~~ 84 (90)
T cd05726 49 LTITNVQRSDVGYY-------ICQTLNVAGSILTKAYLEVTDV 84 (90)
T ss_pred EEEeeCChhhCEEE-------EEEEEcCCCceEEEEEEEEeec
Confidence 45556667888999 9999999999999999998753
No 216
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=88.02 E-value=0.26 Score=28.21 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=26.9
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.|.|
T Consensus 42 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 42 LRISRVALHDQGQY-------ECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred EEEeeCCHHhCEEE-------EEEEEeCCCceeEEEEEeC
Confidence 45556667888999 9999999999988887764
No 217
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=87.93 E-value=1.6 Score=25.48 Aligned_cols=32 Identities=0% Similarity=-0.060 Sum_probs=26.0
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccc
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPI 146 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 146 (158)
.+.+......|.|.| .|.+.|..|....++.|
T Consensus 53 ~L~I~~v~~~DsG~Y-------~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 53 ILTIRNVQLSDAGTY-------VCTGSNMLDTDEATATL 84 (85)
T ss_pred EEEECCCCHHHCEEE-------EEEEeccCCeEeEEEEE
Confidence 355666678888999 99999999999888765
No 218
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=87.73 E-value=0.35 Score=27.44 Aligned_cols=29 Identities=7% Similarity=-0.017 Sum_probs=24.2
Q ss_pred hhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 113 RTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.....|.|.| .|.+.|..|....++.|.|
T Consensus 43 ~v~~~D~G~Y-------~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 43 GLVKSDEGFY-------QCIAENDVGNVQASAQLII 71 (71)
T ss_pred cCCcccCEEE-------EEEEEcCCCEEEEEEEEEC
Confidence 4456788899 9999999999999887764
No 219
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=87.53 E-value=0.27 Score=29.92 Aligned_cols=33 Identities=6% Similarity=-0.002 Sum_probs=27.0
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+.+|.|
T Consensus 66 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 66 LHIKDVKLSDSGRY-------DCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeeCCcCCCEEE-------EEEEeccCCcceeEEEEeC
Confidence 45556667888999 9999999999988887764
No 220
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=87.20 E-value=0.35 Score=29.34 Aligned_cols=33 Identities=6% Similarity=0.036 Sum_probs=26.9
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.|.|..|....+.+|.|
T Consensus 65 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 65 LTLKYIQYTDAGEY-------LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCccCcCEEE-------EEEEecCCCCeeEEEEEEC
Confidence 44555667888999 9999999999998888764
No 221
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=86.76 E-value=0.4 Score=26.92 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=26.0
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.|.|
T Consensus 37 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 37 LKIRNVTAGDEGSY-------TCEAENMVGKIEASASLTV 69 (69)
T ss_pred EEECcCChhHCEEE-------EEEEEcCCCcEEEEEEEEC
Confidence 44555567788999 9999999999888877654
No 222
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=86.26 E-value=11 Score=29.35 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=26.5
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC-CCceEEEEEEEEecc
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNT-LGGSEGVIKVYNIGY 98 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~-~g~~~~~~~l~v~~~ 98 (158)
++.+.+++.+|.|.|.|...-. .-...+.+.+.|.+.
T Consensus 82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH~I~vrVmPK 119 (500)
T PHA02914 82 SFIEENIGEHEDGDFKCIFYLGDNESHKHEILVRKAPK 119 (500)
T ss_pred EEEecCcccccCCcEEEEEEeCCceeEEEEEEEEEccc
Confidence 6889999999999999998743 333355566555443
No 223
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=85.91 E-value=0.4 Score=28.61 Aligned_cols=33 Identities=3% Similarity=-0.021 Sum_probs=27.2
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.+.|
T Consensus 55 L~I~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~V 87 (88)
T cd05851 55 LKIFNIQPEDEGTY-------ECEAENIKGKDKHQARVYV 87 (88)
T ss_pred EEECcCChhhCEEE-------EEEEEcCCCceEEEEEEEE
Confidence 44556667888999 9999999999999888765
No 224
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=85.32 E-value=0.45 Score=27.21 Aligned_cols=31 Identities=3% Similarity=0.041 Sum_probs=25.0
Q ss_pred hhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 111 MQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 111 ~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+......|.|.| .|.+.|..|....++.|.|
T Consensus 44 I~~~~~~D~G~Y-------~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 44 IVDVKIEDTGVY-------SCTAQNTAGSISANATLTV 74 (75)
T ss_pred EeeCCcccCEEE-------EEEEEcCCCEEEeeEEEEE
Confidence 344456788999 9999999999988887765
No 225
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=85.32 E-value=0.48 Score=27.23 Aligned_cols=33 Identities=3% Similarity=0.064 Sum_probs=26.2
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.+.|
T Consensus 43 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 43 LILTDVQPSDTAVY-------QCEARNRHGNLLANAHVHV 75 (76)
T ss_pred EEECCCChhhCEEE-------EEEEECCCCeEEEEEEEEE
Confidence 34445556788899 9999999999999888764
No 226
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=85.17 E-value=0.46 Score=28.13 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=27.5
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+.+......|.|.| .|.+.|..|....++.|+|
T Consensus 54 ~L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 87 (88)
T cd04968 54 VLKIPNIQFEDEGTY-------ECEAENIKGKDTHQGRIYV 87 (88)
T ss_pred EEEECCCCcccCEEE-------EEEEEECCCcEEEEEEEEE
Confidence 345556667888999 9999999999988888765
No 227
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=85.15 E-value=0.43 Score=29.45 Aligned_cols=35 Identities=3% Similarity=0.022 Sum_probs=29.0
Q ss_pred chhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 107 TDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
..+.+.+....|.|.| +|.|.|..|.......|.|
T Consensus 65 ~~L~i~~v~~~D~G~Y-------tc~A~N~~G~~~~t~~L~V 99 (101)
T cd04975 65 SELKLVRLKESEAGTY-------TFLASNSDASKSLTFELYV 99 (101)
T ss_pred EEEEEeecCHhhCeeE-------EEEEECCCccEEEEEEEEE
Confidence 4466777888999999 9999999999888777664
No 228
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=84.95 E-value=0.55 Score=27.61 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=25.6
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.|.|..|....+..+++
T Consensus 48 L~I~~~~~~D~G~Y-------tC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 48 LQFDNPTHVNNGNY-------TLVASNEYGQDSKSISAHF 80 (81)
T ss_pred EEECCCCcccCeEE-------EEEEEeCCCCeeeEEEeee
Confidence 34445556788999 9999999999888776654
No 229
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=84.87 E-value=0.64 Score=26.81 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=26.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..|.|
T Consensus 49 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 49 LVIYNAQPQDAGLY-------TCTARNSGGLLRANFPLSV 81 (81)
T ss_pred EEEccCCcccCEEE-------EEEEecCCceEEEEEEEeC
Confidence 45555667888999 9999999999888877654
No 230
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=84.63 E-value=0.64 Score=26.44 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=25.7
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..+.|
T Consensus 42 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 42 LVIKNAERSDSGKY-------TLTLKNPAGEKSATINVKV 74 (74)
T ss_pred EEECCCCcCcCEEE-------EEEEECCCccEEEEEEEEC
Confidence 44555667888999 9999999999888766643
No 231
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=84.08 E-value=0.59 Score=28.03 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=26.2
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+.+|.|
T Consensus 64 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 64 LTLKDVQLTDAGRY-------DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEECcCCcCcCEEe-------EEEEEeCCCCcEEEEEEeC
Confidence 44555567888899 9999999999988877754
No 232
>KOG3515|consensus
Probab=84.07 E-value=3.5 Score=34.61 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=51.1
Q ss_pred CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEE-EEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR-LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
.+...|.+.+.|.+.+.|.|. ......+.++........ +...++ ..+..+-..|.+ ..|.+.|..|..-....+.
T Consensus 611 ~as~~~~a~~~~~~~~~~~k~-p~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~~~~~ 687 (741)
T KOG3515|consen 611 NASDDCVASGVPSTSFTTAKT-PLQTTEGPHIREKATQQG-QTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVSGAIH 687 (741)
T ss_pred cccccceecccccceeecccC-CCcccCCceEEEeeeecc-ccccccccccCCcchhhhc-ceeeecccCCCccccceec
Confidence 678899999999999999999 655555555444333322 333333 444555566666 8999999999876555543
No 233
>PHA03269 envelope glycoprotein C; Provisional
Probab=83.97 E-value=8.5 Score=30.70 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=44.6
Q ss_pred EEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecCC-eEEEEEeecccceEEEEEEEcCCCCCC--CeEEEEEEE
Q psy16261 10 GARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSD--FGTYKCNAK 81 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~v~~~d--~G~Y~C~a~ 81 (158)
.+.+|+...-.|.+..+-+| .+.|+.+ +..+.... +.......++....+|.|.+......| --..+|.+.
T Consensus 338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n-g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~ 414 (566)
T PHA03269 338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSN-FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL 414 (566)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeC-CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence 36789999999999886544 7889999 65554321 112222333556677788775443333 345688775
No 234
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=83.93 E-value=0.51 Score=29.09 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=29.4
Q ss_pred chhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 107 TDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 107 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
..+.+.+....|.|.| +|.|.|..|....+..+.|
T Consensus 65 s~L~I~~v~~~D~G~Y-------tc~A~N~~g~~~~t~~l~V 99 (101)
T cd05859 65 SKLKLIRAKEEDSGLY-------TALAQNEDAVKSYTFALQI 99 (101)
T ss_pred cEEEEeeCCHHHCEEE-------EEEEEcCCceEEEEEEEEE
Confidence 4567778888999999 9999999999888877664
No 235
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=83.90 E-value=0.55 Score=26.29 Aligned_cols=33 Identities=3% Similarity=0.053 Sum_probs=25.8
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..+.|
T Consensus 38 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 38 LKIDNVSEEDDGEY-------RCTASNSLGSARHTISVTV 70 (71)
T ss_pred EEECCCCHHHCEEE-------EEEEEeCCceEEEEEEEEE
Confidence 45555667888999 9999999998887766654
No 236
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=83.68 E-value=0.67 Score=26.07 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=24.4
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPI 146 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 146 (158)
+.+......|.|.| .|.+.|..|....+..|
T Consensus 38 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 38 LAIRDVGVADQGRY-------ECVARNTIGYASVSMVL 68 (69)
T ss_pred EEECcCChhhCEEE-------EEEEECCCCcEEEEEEe
Confidence 34445557788999 99999999998887665
No 237
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=83.55 E-value=0.62 Score=29.06 Aligned_cols=31 Identities=3% Similarity=-0.058 Sum_probs=26.5
Q ss_pred ccccccccCcccceEeeeccCCceEEEEccccCCCCCC
Q psy16261 116 QIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSG 153 (158)
Q Consensus 116 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 153 (158)
..|.|.| .|.|.|..|.......|.+..+|+
T Consensus 79 ~~D~G~Y-------~C~A~N~~G~~~~~i~L~~~~~p~ 109 (109)
T cd05773 79 ALDYALF-------TCTAHNSLGEDSLDIQLVSTSRPD 109 (109)
T ss_pred cCCCEEE-------EEEEEeCCccCcEEEEEEecCCCC
Confidence 3577788 999999999999999999887764
No 238
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=83.45 E-value=0.62 Score=26.41 Aligned_cols=33 Identities=3% Similarity=0.105 Sum_probs=25.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..+.|
T Consensus 38 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 38 LQLDNVLESDDGEY-------VCTAENSEGSARHHYTVTV 70 (71)
T ss_pred EEEcccCHHhCEEE-------EEEEEcCCCeEEEEEEEEE
Confidence 44455566788889 9999999999888776654
No 239
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=83.24 E-value=0.55 Score=26.63 Aligned_cols=34 Identities=3% Similarity=-0.069 Sum_probs=26.6
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+.+.+....|.|.| +|.+.|..|...++..++|
T Consensus 32 ~L~i~~v~~~D~G~Y-------tC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 32 SLQIKDVTEASAGTY-------TLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred EEEECCCCHHHCEEE-------EEEEEECCccEEEEEEEEE
Confidence 455566678899999 9999999998777766653
No 240
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=82.87 E-value=0.72 Score=26.59 Aligned_cols=29 Identities=7% Similarity=0.192 Sum_probs=24.5
Q ss_pred hhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 113 RTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.....+.|.| .|.+.|..|....++.|.|
T Consensus 47 ~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 47 KVQERSSAVY-------QCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCHhhCEEE-------EEEEEcCCCEEEEEEEEEe
Confidence 4456778888 9999999999999998875
No 241
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=82.79 E-value=0.68 Score=27.78 Aligned_cols=33 Identities=3% Similarity=0.133 Sum_probs=26.1
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..|.|
T Consensus 60 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~L~V 92 (95)
T cd05730 60 MTILDVDKLDEAEY-------TCIAENKAGEQEAEIHLKV 92 (95)
T ss_pred EEECCCChhhCEEE-------EEEEEcCCCeEEEEEEEEE
Confidence 34445566788889 9999999999988887764
No 242
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=82.54 E-value=0.79 Score=26.03 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=26.7
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.|.|
T Consensus 41 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 41 LEILNVTKSDEGKY-------TCFAENFFGKANSTGSLSV 73 (73)
T ss_pred EEEccCChhHCEEE-------EEEEECCCCceEEEEEEEC
Confidence 45556667888999 9999999999988877754
No 243
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=82.35 E-value=0.71 Score=26.26 Aligned_cols=32 Identities=6% Similarity=0.108 Sum_probs=25.1
Q ss_pred hhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 110 EMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+......+.|.| .|.+.|..|....++.++|
T Consensus 44 ~i~~v~~~D~G~Y-------~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 44 ILSNVQPNDTAVY-------QCNASNVHGYLLANAFVHV 75 (76)
T ss_pred EECCCChhhCEEE-------EEEEEccCCeEEEeEEEEE
Confidence 3444455778888 9999999999998888764
No 244
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=81.86 E-value=0.92 Score=26.90 Aligned_cols=34 Identities=6% Similarity=-0.036 Sum_probs=26.5
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+.+......|.|.| .|.+.|..|....+..|.|
T Consensus 53 ~L~I~~~~~~D~G~Y-------~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 53 SFVIEGAEREDEGVY-------TITVTNPVGEDHASLFVKV 86 (86)
T ss_pred EEEECCCccCcCEEE-------EEEEEeCCCcEEEEEEEEC
Confidence 345556677888999 9999999999887766543
No 245
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=81.23 E-value=0.64 Score=26.54 Aligned_cols=33 Identities=3% Similarity=-0.090 Sum_probs=25.3
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..++|
T Consensus 36 L~I~~v~~~D~G~Y-------tC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 36 LTIYEVTEKDAGNY-------TVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred EEECcCCHHHCEEE-------EEEEEECCCceeeEEEEEE
Confidence 34556667888999 9999999998777666553
No 246
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=81.23 E-value=0.91 Score=26.72 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=26.1
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....++.|.|
T Consensus 53 L~i~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 53 LRITKLSLSDSGMY-------QCVAENKHGTIYASAELAV 85 (85)
T ss_pred EEEeeCCHHHCEEE-------EEEEECCCCeEEEEEEEEC
Confidence 34445556788889 9999999999998887764
No 247
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=80.15 E-value=1.2 Score=25.93 Aligned_cols=30 Identities=3% Similarity=-0.018 Sum_probs=23.4
Q ss_pred hhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 112 QRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 112 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
......+.|.| .|.+.|..|....+..|.|
T Consensus 56 ~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 56 ESVVPSDKGNY-------TCVVENEYGSINHTYHLDV 85 (85)
T ss_pred ccCCcccCEEE-------EEEEEeCCCEEEEEEEEEC
Confidence 33445677888 9999999999988877654
No 248
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=80.02 E-value=0.83 Score=26.37 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=24.1
Q ss_pred hhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 110 EMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 110 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+......+.|.| .|.+.|..|....++.++|
T Consensus 41 ~I~~~~~~D~G~Y-------~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 41 TLRSAGPDDSGLY-------YCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred EEeeCCcccCEEE-------EEEEEeCCCeEeeCceEEE
Confidence 3444456788999 9999999998877666654
No 249
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=80.02 E-value=1.1 Score=26.63 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=25.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......+.|.| .|.+.|..|....++.|.|
T Consensus 58 L~I~~v~~~D~g~Y-------~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 58 LQLSNITSETQTTV-------TCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EEEecCCcccCEEE-------EEEEECCCCceeEEEEEeC
Confidence 34445556678888 9999999999988877754
No 250
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=78.72 E-value=1.1 Score=27.27 Aligned_cols=34 Identities=6% Similarity=-0.022 Sum_probs=27.1
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCC-ceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGS-GYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-g~~~~~~~~~~ 148 (158)
.+.+......|.|.| .|.|.|.. |....++.|.+
T Consensus 61 ~L~I~~v~~~D~G~Y-------tC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 61 TLTIYNANIDDAGIY-------KCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EEEEeccChhhCEEE-------EEEEEcCCCCcEEEEEEEEE
Confidence 456677788899999 99999996 88777776653
No 251
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=78.45 E-value=1.3 Score=25.12 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=22.4
Q ss_pred hhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 113 RTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 113 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.....+.|.| .|.+.|..|....+..++|
T Consensus 46 ~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 46 ITTVKDTGSF-------TCIASNAAGEATATVELHI 74 (74)
T ss_pred ECChhhCEEE-------EEEEECCCCeEEEEEEEEC
Confidence 3446778888 9999999998877766653
No 252
>PHA03270 envelope glycoprotein C; Provisional
Probab=77.99 E-value=25 Score=27.76 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=42.0
Q ss_pred EEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeec-C-CeEEEEEeecccceEEEEEEEcCCCCCC-CeEEEEEEE
Q psy16261 10 GARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHE-G-SRYHMWTEKFSSYKFYMRLYIGSLSKSD-FGTYKCNAK 81 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~ 81 (158)
.+.+|+...-.|.+..+-+| .+.|+.+ +..+.. . -+.... ...+.....|++++....... --+.+|.+.
T Consensus 230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n-g~~V~~~~~i~~~~~-~~~dGfs~vStvtsea~~~~~~PPsLrC~v~ 305 (466)
T PHA03270 230 AVLEGEPFGATCVAANYYPGDRAAFRWFEG-GDEVFAPERVRTRVD-AQRDGFSATSTLTSEARAGLAPPRNLTCEFT 305 (466)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeC-CccccCcceeeeeeE-ecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence 36789999999999886554 7889999 655432 2 111122 122334456677766654322 235788775
No 253
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=77.62 E-value=1.1 Score=25.35 Aligned_cols=33 Identities=3% Similarity=-0.102 Sum_probs=25.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..++|
T Consensus 37 L~I~~v~~~D~G~Y-------tC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 37 LTIKDVTEEDAGNY-------TVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred EEECcCCHHHCEEE-------EEEEEcCCccEEEEEEEEE
Confidence 44556678889999 9999999998777766553
No 254
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=75.69 E-value=1.5 Score=25.78 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=24.4
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEcccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIR 147 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 147 (158)
+.+......|.|.| .|.|.|..|....+..+.
T Consensus 46 L~i~~~~~~D~G~Y-------tC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 46 LQLDNPTHLNNGIY-------TLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEECCCCcccCEEE-------EEEEEcCCcccceEEEee
Confidence 34555667899999 999999999877665443
No 255
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=75.60 E-value=1.6 Score=25.59 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=27.2
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+.+......|.|.| .|.+.|..|....+..|.|
T Consensus 57 ~L~I~~v~~~D~G~Y-------~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 57 SLTIKNVTREDAGTY-------TCVASNSSGEATASVNLTV 90 (90)
T ss_dssp EEEESSESGGGSEEE-------EEEEEETTEEEEEEEEEEE
T ss_pred EEccCCCChhhCEEE-------EEEEEECCCEEEEEEEEEC
Confidence 355666678899999 9999999999888876653
No 256
>PHA03376 BARF1; Provisional
Probab=75.41 E-value=12 Score=26.20 Aligned_cols=26 Identities=31% Similarity=0.713 Sum_probs=21.5
Q ss_pred CCCEEEEeEEeecCCCeeEEEcCCCe
Q psy16261 14 AAPLTLDCHVESYPKPITFWTHENGS 39 (158)
Q Consensus 14 g~~v~l~C~~~g~p~p~i~W~~~~~~ 39 (158)
.+...+.|...|.|.|++.|.-+.|.
T Consensus 139 ~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 139 FSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred CCeeEEEEecCCcCCchheeccccCC
Confidence 45678899999999999999987553
No 257
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=74.68 E-value=19 Score=28.10 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=46.7
Q ss_pred ceEEEecCCCEEEEeEEee---cCCCeeEEEcCCCeeee-----------------cCCeEEEEEee-cccceEEEEEEE
Q psy16261 7 QLIGARLAAPLTLDCHVES---YPKPITFWTHENGSLIH-----------------EGSRYHMWTEK-FSSYKFYMRLYI 65 (158)
Q Consensus 7 ~~~~~~~g~~v~l~C~~~g---~p~p~i~W~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~l~i 65 (158)
..+.+..|.++.|.|...- .......|... +-.+. ....+.+.... ...-.-.++|+|
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t-~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDT-GFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEec-CCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 3455667999999998754 33456779765 32211 11222222110 000112468999
Q ss_pred cCCCCCCCeEEEEEEEcC
Q psy16261 66 GSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 66 ~~v~~~d~G~Y~C~a~n~ 83 (158)
+.+.-+..|-|+|.|...
T Consensus 351 kka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 351 KKAHINNAGCYEAQAFMG 368 (500)
T ss_pred eeEEEEcCCceEEEEecC
Confidence 999999999999999864
No 258
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=74.15 E-value=1.6 Score=26.06 Aligned_cols=32 Identities=9% Similarity=-0.046 Sum_probs=24.9
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEcccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIR 147 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 147 (158)
+.+......|.|.| .|.+.|..|.......+.
T Consensus 60 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05737 60 LTIKGVSSEDSGKY-------GIVVKNKYGGETVDVTVS 91 (92)
T ss_pred EEEccCChhhCEEE-------EEEEEECCCcceEEEEEe
Confidence 45556667888999 999999999887765543
No 259
>PHA03271 envelope glycoprotein C; Provisional
Probab=72.98 E-value=32 Score=27.13 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=42.6
Q ss_pred EEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecCCe--EEE-EEeecccceEEEEEEEcCCCCCCCeEEEEEEE
Q psy16261 10 GARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEGSR--YHM-WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 81 (158)
.+..|+...-.|.+..+-+| .++|+.+ +........ ... ...+.+.....++|.+.+.....--..+|.+.
T Consensus 256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n-G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~ 332 (490)
T PHA03271 256 PVLSGENYKASCIVRHFYPPGSVYVSWRQN-GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVA 332 (490)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeC-CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEE
Confidence 36789999999999886555 7889999 655433211 111 11122334455667665543333446788775
No 260
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=72.32 E-value=2.3 Score=23.94 Aligned_cols=29 Identities=3% Similarity=0.024 Sum_probs=22.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSG 144 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~ 144 (158)
+.+......|.|.| .|.+.|..|....++
T Consensus 45 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~ 73 (75)
T cd05750 45 LQINKAKLADSGEY-------TCVVENILGNDTVTA 73 (75)
T ss_pred EEEccCCcccCeEE-------EEEEEEcCCceeEEE
Confidence 34455567888999 999999999877664
No 261
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=71.36 E-value=2.6 Score=24.10 Aligned_cols=32 Identities=6% Similarity=0.027 Sum_probs=23.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEcccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIR 147 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 147 (158)
+.+......+.|.| .|.+.|..|....+..+.
T Consensus 50 L~i~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 50 LSLKNLKPEDSGKY-------TCHVSNRAGEINATYKVD 81 (82)
T ss_pred EEEccCChhhCEEE-------EEEEEcCCccEEEEEEEe
Confidence 34455567788899 999999999876665443
No 262
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=70.57 E-value=2.3 Score=24.76 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=26.7
Q ss_pred hhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 108 DEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 108 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+.+......|.|.| .|.+.|..|....++.+.|
T Consensus 50 ~L~I~~v~~~DsG~Y-------~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 50 TLTIPNATLKDSGTY-------TCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEECCCChhhCEEE-------EEEEccCCCceEEEEEEEE
Confidence 355566678889999 9999999988877776654
No 263
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=69.32 E-value=3 Score=24.79 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=24.2
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPI 146 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 146 (158)
+.+......|.|.| .|.+.|..|....+..|
T Consensus 61 L~i~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 61 FEISKVQMSDEGNY-------TVVVENSEGKQEAQFTL 91 (92)
T ss_pred EEECCCCcccCEeE-------EEEEEcCCCCEeEEEEe
Confidence 44556667888999 99999999988776554
No 264
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=67.90 E-value=2.4 Score=24.37 Aligned_cols=32 Identities=3% Similarity=-0.012 Sum_probs=24.5
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEcccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIR 147 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 147 (158)
+.+......|.|.| .|.+.|..|..+..+-+.
T Consensus 44 L~I~~v~~~D~G~Y-------~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 44 LTIRDVKESDQGAY-------TCEAINTRGMVFGIPDGI 75 (78)
T ss_pred EEECCCChHHCEEE-------EEEEEecCCEEEecccEE
Confidence 44555667788899 999999999987766543
No 265
>PHA03273 envelope glycoprotein C; Provisional
Probab=67.64 E-value=62 Score=25.87 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=44.3
Q ss_pred EEecCCCEEEEeEEeecCCC---eeEEEcCCCeeeecCC--eEEEEEeecccceEEEEEEEcCCCC-CCCeEEEEEEE
Q psy16261 10 GARLAAPLTLDCHVESYPKP---ITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMRLYIGSLSK-SDFGTYKCNAK 81 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p---~i~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~v~~-~d~G~Y~C~a~ 81 (158)
.+.+|+...-.|.+..+-+| .+.|+.+ +..+.... +-......++.....|.|.+..... ..--+.+|.+.
T Consensus 246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d-g~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~ 322 (486)
T PHA03273 246 PSLKGENYRAVCVVASYFPHSSVKLRWYKN-AKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE 322 (486)
T ss_pred ccccCCCceEEEEeeeecCCCceEEEEEeC-CeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence 36789999999999886544 7889999 66665221 1111112223455667787776543 33445788775
No 266
>PHA03189 UL14 tegument protein; Provisional
Probab=66.58 E-value=54 Score=24.75 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEE
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGV 90 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 90 (158)
+|+| ++..+.+|.|.|...|..+.....
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~tHglv~~ 162 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNETHGLVLQ 162 (348)
T ss_pred EEEE-EEEecccceEEEEeccccceeeeE
Confidence 4554 455677999999999986655433
No 267
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=64.92 E-value=4.6 Score=24.37 Aligned_cols=33 Identities=3% Similarity=-0.178 Sum_probs=25.9
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
+.+......|.|.| .|.+.|..|....+..|+|
T Consensus 62 L~I~~~~~~DsG~Y-------~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 62 LWFLPAALEDSGLY-------TCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred EEEccCCcccCeEE-------EEEEcCCCccEEEEEEEEC
Confidence 45556677888999 9999999998877776653
No 268
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=61.11 E-value=4.6 Score=24.12 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=24.4
Q ss_pred hhhhhhcccccccccCcccceEeeeccCCceEEEEcccc
Q psy16261 109 EEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIR 147 (158)
Q Consensus 109 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~ 147 (158)
+.+......|.|.| .|.+.|..|....+..+.
T Consensus 60 L~I~~~~~~D~G~Y-------~C~a~N~~G~~~~~~~v~ 91 (92)
T cd05891 60 LTIKGVTSEDSGKY-------SINVKNKYGGETVDVTVS 91 (92)
T ss_pred EEECCCChhhCEEE-------EEEEEeCCCceeeEEEEE
Confidence 34455567888999 999999999887766554
No 269
>PHA03240 envelope glycoprotein M; Provisional
Probab=60.55 E-value=7.4 Score=27.51 Aligned_cols=73 Identities=25% Similarity=0.251 Sum_probs=40.9
Q ss_pred EEEecCCCEEEEeEEeecCCCeeEEEc-------CCCe---ee-ec----CCe---EEEEEee--cccceEEEEEEEcCC
Q psy16261 9 IGARLAAPLTLDCHVESYPKPITFWTH-------ENGS---LI-HE----GSR---YHMWTEK--FSSYKFYMRLYIGSL 68 (158)
Q Consensus 9 ~~~~~g~~v~l~C~~~g~p~p~i~W~~-------~~~~---~~-~~----~~~---~~~~~~~--~~~~~~~~~l~i~~v 68 (158)
+.+.+|+.|.|--.-.-.|...+.|++ ++|. .+ .. .++ ....... .......++|.|.++
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 456788998886544445677899998 2222 11 00 011 0000000 011233568999999
Q ss_pred CCCCCeEEEEEEEc
Q psy16261 69 SKSDFGTYKCNAKN 82 (158)
Q Consensus 69 ~~~d~G~Y~C~a~n 82 (158)
..+|.|+| |+-.+
T Consensus 113 n~sd~~nY-cr~k~ 125 (258)
T PHA03240 113 NLSDAGEY-CRKKC 125 (258)
T ss_pred eecCcchh-hhccC
Confidence 99999999 44443
No 270
>KOG1026|consensus
Probab=57.78 E-value=5.6 Score=33.56 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=43.8
Q ss_pred EEecCCCEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceEE
Q psy16261 10 GARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEG 89 (158)
Q Consensus 10 ~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 89 (158)
.+..+..+.+.|.+.+.|.|.+.|+.. ................ -..... ++.|.+.|..|....
T Consensus 203 ~v~~~~~~~~~c~~~~~~vp~~~~~~~-~~~~~~~~~~~~~c~~-------~~~~~~--------~~~c~~E~~~~~~~~ 266 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPVPCHYWFPN-CLASSNTNQTSSLCRS-------ECEVLE--------NDLCIAENAVARSNP 266 (774)
T ss_pred hhcccchheeeeecccCCCcceeeecc-cccccCCCcccccccc-------cceeee--------chhhHHHHhhhhcCc
Confidence 356788999999999999999999987 4333222111000000 001111 178999998887765
Q ss_pred EEEEEEec
Q psy16261 90 VIKVYNIG 97 (158)
Q Consensus 90 ~~~l~v~~ 97 (158)
.+.+.+..
T Consensus 267 ~v~~~~~~ 274 (774)
T KOG1026|consen 267 SILLVVDL 274 (774)
T ss_pred eeeeEEec
Confidence 55554443
No 271
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=56.02 E-value=6.2 Score=24.44 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=30.6
Q ss_pred cccchhhhhhhcccccccccCcccceEeeeccCCceEEEEccccC
Q psy16261 104 QYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRL 148 (158)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (158)
.+++.+.+.|.+..+.|.| +|++.|+.+....+..|.|
T Consensus 62 rY~S~L~L~Rlk~~E~G~Y-------Tf~a~N~~~~~s~tF~l~v 99 (101)
T cd05860 62 RYVSELHLTRLKGTEGGTY-------TFLVSNSDASASVTFNVYV 99 (101)
T ss_pred EEEEEEEEeecChhhCcEE-------EEEEECCCCeEEEEEEEEE
Confidence 3566677788889999999 9999999988877666554
No 272
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=54.49 E-value=43 Score=19.74 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=34.4
Q ss_pred CEEEEeEEeecCCCeeEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCceE
Q psy16261 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88 (158)
Q Consensus 16 ~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 88 (158)
...|.+.+.+. .+.++|+.+ +..+....... .+.. .....|.|+..+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vd-g~~~g~~~~~~-------------~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVD-GEPLGTTQPGH-------------QLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEEC-CEEcccCCCCC-------------eEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 56777777776 559999999 77763221110 1222 22456888888877777654
No 273
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=52.50 E-value=41 Score=18.89 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=14.1
Q ss_pred EecCCCEEEEeEEeecCCCeeEEEc
Q psy16261 11 ARLAAPLTLDCHVESYPKPITFWTH 35 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~p~p~i~W~~ 35 (158)
+..|+.+.|. |.+...++|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 4567788775 44445788983
No 274
>PHA03112 IL-18 binding protein; Provisional
Probab=44.10 E-value=93 Score=20.59 Aligned_cols=27 Identities=30% Similarity=0.668 Sum_probs=20.6
Q ss_pred EecCCCEEEEeEEeec-CC-CeeEEEcCC
Q psy16261 11 ARLAAPLTLDCHVESY-PK-PITFWTHEN 37 (158)
Q Consensus 11 ~~~g~~v~l~C~~~g~-p~-p~i~W~~~~ 37 (158)
..+++.+.|.|.+-++ |. ..+.|.+++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 4568899999999876 43 478899773
No 275
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=43.28 E-value=84 Score=21.32 Aligned_cols=24 Identities=21% Similarity=0.045 Sum_probs=20.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCC
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLG 85 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g 85 (158)
.|.|.+.+.+|+|.|.-.+.-...
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~ 148 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGA 148 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCC
Confidence 499999999999999988875533
No 276
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=37.92 E-value=1e+02 Score=21.36 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=36.7
Q ss_pred EeEEee-cCCCeeEEEcCCCeeeecCCeEEE----EEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 20 DCHVES-YPKPITFWTHENGSLIHEGSRYHM----WTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 20 ~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.|...- ...|.++|... ...+..++..+. .... -+...+...|...+..|.-.|.|.+.-.
T Consensus 113 vCitseL~s~PtitWsVg-s~rl~n~gftqtwy~iqPGv--CgilrS~v~~~R~~G~~~~~y~c~~~~~ 178 (226)
T PF05955_consen 113 VCITSELVSQPTITWSVG-SDRLRNDGFTQTWYGIQPGV--CGILRSEVRIPRAEGRDNVDYLCEIRAL 178 (226)
T ss_pred EEeeccccCCCeEEEEec-cceeecCCccceeecccCcc--eeeEeeeeecccCCCCCcccEEeccccc
Confidence 465533 45789999887 555555433222 1111 1122345778888888889999977653
No 277
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.24 E-value=51 Score=26.23 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=16.1
Q ss_pred EEEEcCCCCCCCeEEEEEEEc
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n 82 (158)
.|.|.+....++|.|.|++.-
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEE
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 599999999999999998874
No 278
>PHA03283 envelope glycoprotein E; Provisional
Probab=35.05 E-value=1.2e+02 Score=24.72 Aligned_cols=37 Identities=16% Similarity=-0.014 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEec
Q psy16261 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIG 97 (158)
Q Consensus 61 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 97 (158)
+.|.|.+.+.+++|.|+-...+..+.....+.|.|..
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 3599999999999999999998766445556666666
No 279
>PHA03290 envelope glycoprotein I; Provisional
Probab=29.81 E-value=1.7e+02 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCCeEEEEEEEcC
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
.|.|.+...+|+|.|...++-.
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ld 151 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLD 151 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeC
Confidence 5999999999999999988755
No 280
>PHA03289 envelope glycoprotein I; Provisional
Probab=29.60 E-value=1.8e+02 Score=22.22 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=23.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 94 (158)
.|.|.+.+.+|+|.|.-.++-........+.+.
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~ls 155 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTS 155 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCccCceEEEE
Confidence 589999999999999998886544333333333
No 281
>PHA03282 envelope glycoprotein E; Provisional
Probab=29.42 E-value=1.3e+02 Score=24.34 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCCCeEEEEEEEcCCCc--eEEEEEEEEecc
Q psy16261 61 MRLYIGSLSKSDFGTYKCNAKNTLGG--SEGVIKVYNIGY 98 (158)
Q Consensus 61 ~~l~i~~v~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~ 98 (158)
.+|.|.+++.+|+|.|+..+...-.. ....+.|.|...
T Consensus 124 ~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~ 163 (540)
T PHA03282 124 GTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR 163 (540)
T ss_pred ceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence 36999999999999999886322111 244455555543
No 282
>KOG3611|consensus
Probab=28.98 E-value=59 Score=27.75 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=35.3
Q ss_pred CEEEEeEEeecCCCeeEEEcCC-C--e--eeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcC
Q psy16261 16 PLTLDCHVESYPKPITFWTHEN-G--S--LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNT 83 (158)
Q Consensus 16 ~v~l~C~~~g~p~p~i~W~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 83 (158)
...|.|...+...+ +.|+... + . ......+......+ .+.+..++..|.|.|.|.+...
T Consensus 571 ~~~l~c~~~~~~a~-~~w~~~~~~~~~~~~~~~~~~~~~~~~G--------~lll~~~q~~~~G~y~c~~~e~ 634 (737)
T KOG3611|consen 571 SEVLRCVPSSNQAP-VVWYHQSTKDGRKEEVRQRDVVSRTDEG--------GLVLLSVQKLDGGTYPCYADES 634 (737)
T ss_pred cceeeccccccccc-eeeEeeccCccccceeccCcceeecccC--------ceeEEEEeeccCcccccccccC
Confidence 36778887776555 6675220 1 1 12222222222222 4778889999999999998764
No 283
>PHA03292 envelope glycoprotein I; Provisional
Probab=26.56 E-value=2.1e+02 Score=22.44 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCce
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~ 87 (158)
.|.|.+.+.+|+|.|...+.-.....
T Consensus 129 LL~I~~P~~~DSGiY~LRV~Ldga~~ 154 (413)
T PHA03292 129 LLNITGPQPADSGAYILRVKLDHAPT 154 (413)
T ss_pred EEEeCCCCcccceeEEEEEEeCCCcc
Confidence 59999999999999999888654333
No 284
>PHA03291 envelope glycoprotein I; Provisional
Probab=23.11 E-value=2.5e+02 Score=21.83 Aligned_cols=35 Identities=9% Similarity=-0.031 Sum_probs=26.0
Q ss_pred EEEEcCCCCCCCeEEEEEEEcCCCceEEEEEEEEe
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 96 (158)
.|.|.+...+|+|.|...++-........+.|.+.
T Consensus 130 LL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 130 LLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred EEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 58999999999999999988665444444444444
No 285
>PHA03282 envelope glycoprotein E; Provisional
Probab=21.47 E-value=1.1e+02 Score=24.72 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCeEEEEEEEc
Q psy16261 62 RLYIGSLSKSDFGTYKCNAKN 82 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~n 82 (158)
.|.|.+....++|.|.|++.-
T Consensus 334 dL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 334 NLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ceEecCCCcccCceEEEEEEE
Confidence 699999999999999998874
No 286
>KOG0613|consensus
Probab=21.11 E-value=79 Score=28.56 Aligned_cols=75 Identities=13% Similarity=-0.033 Sum_probs=0.0
Q ss_pred eEEEecCCCEEEEeEEeecCCCe-eEEEcCCCeeeecCCeEEEEEeecccceEEEEEEEcCCCCCCCeEEEEEEEcCCCc
Q psy16261 8 LIGARLAAPLTLDCHVESYPKPI-TFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 8 ~~~~~~g~~v~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 86 (158)
.+.+..+..+.+.|...+.+.|. +.|+.+ ......+............-. .+.|..+...+.+.|.|.|.|..|.
T Consensus 343 ~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ts~---~~~~~~~~~~e~~~~~~~a~n~~g~ 418 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTALSGTQKPDEAQGYHG-EEVSSESLGALPCPVGTVTSH---TYTIKDAGPGEGYFTRVPAVNKGGT 418 (1205)
T ss_pred eeccccCcceeecccccCCcCCchheeecc-cccccccccccccccccccCc---chhhhhcCcccccccccceeccCCc
No 287
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=20.66 E-value=75 Score=17.14 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=12.2
Q ss_pred CCCCeEEEEEEEcCCCc
Q psy16261 70 KSDFGTYKCNAKNTLGG 86 (158)
Q Consensus 70 ~~d~G~Y~C~a~n~~g~ 86 (158)
...+..+.|.++|..|.
T Consensus 7 kdssnsflctvqnkng~ 23 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGD 23 (65)
T ss_pred ecCCCceEEEEecccHh
Confidence 34456689999998764
No 288
>PHA03286 envelope glycoprotein E; Provisional
Probab=20.35 E-value=1.2e+02 Score=24.31 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCeEEEEEEE
Q psy16261 62 RLYIGSLSKSDFGTYKCNAK 81 (158)
Q Consensus 62 ~l~i~~v~~~d~G~Y~C~a~ 81 (158)
+|.+.+....++|.|.|++.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~ 327 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVAL 327 (492)
T ss_pred ceeecCCCcccCceEEEEEE
Done!