RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16261
(158 letters)
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 71.3 bits (175), Expect = 4e-17
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYI 65
+ L + V+ PKP W + NG++++E + +++ L +
Sbjct: 8 TFLESPTSDHHWCIPFTVKGNPKPALQWFY-NGAILNESKYICTKIHVTNHTEYHGCLQL 66
Query: 66 GSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ + + G Y AKN G E I
Sbjct: 67 DNPTHMNNGDYTLIAKNEYGKDEKQISA 94
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 72.6 bits (178), Expect = 4e-16
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 6/95 (6%)
Query: 1 MIVIPSQLIG--ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK 58
+ ++ A L +TL C + +P+P WT +G I EK
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK-DGEPIENEEEDD---EKHIFSD 251
Query: 59 FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I ++ K+D Y C A+N G + I +
Sbjct: 252 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 55.7 bits (134), Expect = 5e-10
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHE-GSRYHMWTEKFSSYKF 59
M + + C V S P W H+ +I + R+ + +
Sbjct: 102 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN------ 155
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGS 87
L I + K+D GTY+C + G
Sbjct: 156 --YLQIRGIKKTDEGTYRCEGRILARGE 181
Score = 51.4 bits (123), Expect = 1e-08
Identities = 17/89 (19%), Positives = 23/89 (25%), Gaps = 6/89 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEG-SRYHMWTEKFSSYKF 59
+ I + C V K W NG + R + S
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST- 63
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L I + + D G YKC G
Sbjct: 64 ---LTIYNANIDDAGIYKCVVTAEDGTQS 89
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 65.0 bits (159), Expect = 8e-15
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I+ S+ I + L+ P P WT S + + ++
Sbjct: 5 ILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGAALAPELLVDAKSSTT----- 58
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
++ S ++D G YK KN LG E + +V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 66.7 bits (163), Expect = 4e-14
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ A + L+C ++ P W + + G +Y + +E F +
Sbjct: 195 FRKKPHPVETLKGADVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENFLT----- 248
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
++I ++ +D G Y+C A N +G V +
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSIT 281
Score = 61.7 bits (150), Expect = 3e-12
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + +C + P+ W + + I E S++ M + +
Sbjct: 102 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVA----- 155
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L + +LS D G Y C A N G
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAG 179
Score = 60.1 bits (146), Expect = 1e-11
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 6/84 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + L T CHV W + I G Y M + ++
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTA----- 61
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L + ++K D G Y C A N G
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAG 85
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 62.0 bits (151), Expect = 2e-13
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L+C + + P P FW N + R ++ + L I ++K D G
Sbjct: 32 SVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRV----TLLIKDVNKKDAGW 87
Query: 76 YKCNAKNTLG 85
Y +A N G
Sbjct: 88 YTVSAVNEAG 97
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 62.0 bits (151), Expect = 2e-13
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 6/92 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I+ + R + L V W I E + + S
Sbjct: 10 IIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQIQESEHMKVENSENGS----- 63
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+L I + + G Y +N LG + + +
Sbjct: 64 KLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 65.6 bits (160), Expect = 2e-13
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L+C ++ P W + + G +Y + +E F + ++I ++ +D G
Sbjct: 401 DVHLECELQGTPPFQVSWHK-DKRELRSGKKYKIMSENFLT-----SIHILNVDSADIGE 454
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y+C A N +G V +
Sbjct: 455 YQCKASNDVGSDTCVGSI 472
Score = 62.1 bits (151), Expect = 4e-12
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+ +C + W +G L+ + + + L I +S G
Sbjct: 118 PVAFECRINGSEPLQVSWYK-DGELLKDDANLQTSFIHNVA-----TLQILQTDQSHVGQ 171
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y C+A N LG + K+
Sbjct: 172 YNCSASNPLGTASSSAKLT 190
Score = 61.0 bits (148), Expect = 9e-12
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + L T CHV W + I G Y M + ++
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTA----- 253
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L + ++K D G Y C A N G ++
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Score = 59.8 bits (145), Expect = 2e-11
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 5/92 (5%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
V I + + L +E W + G ++ E + + +
Sbjct: 480 FVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIA----- 534
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L ++ G Y C KN G E +
Sbjct: 535 TLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Score = 59.4 bits (144), Expect = 3e-11
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + +C + P+ W + + I E S++ M + +
Sbjct: 294 IKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVA----- 347
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L + +LS D G Y C A N G
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAG 371
Score = 56.7 bits (137), Expect = 3e-10
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+TL C V+ P+ W + + Y M + + L I + SD G
Sbjct: 22 PITLQCKVDGTPEIRIAWYK-EHTKLRSAPAYKMQFKNNVA-----SLVINKVDHSDVGE 75
Query: 76 YKCNAKNTLG 85
Y C A+N++G
Sbjct: 76 YTCKAENSVG 85
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A
{Homo sapiens}
Length = 291
Score = 64.5 bits (157), Expect = 3e-13
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ I + + C P+ I W + G I R + E S
Sbjct: 7 VTISLSKVELSVGESKFFTCTAIGEPESID-WYNPQGEKIISTQRVVVQKEGVRS----- 60
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGG---SEGVIKVY 94
RL I + + D G Y+C A + G + V+++Y
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
Score = 58.3 bits (141), Expect = 5e-11
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+T C P+P W NG LI E +Y + L + ++ SD G
Sbjct: 211 EMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTE-------LTVRNIINSDGGP 262
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N G E +
Sbjct: 263 YVCRATNKAGEDEKQAFL 280
Score = 53.7 bits (129), Expect = 2e-09
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ C V S P P W + N + R+ M L I +++KSD G
Sbjct: 115 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--------NLQILNINKSDEG 166
Query: 75 TYKCNAKNTLGGS 87
Y+C + G
Sbjct: 167 IYRCEGRVEARGE 179
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 63.2 bits (154), Expect = 3e-13
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + A +++ P P+ W LI Y + + F
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQV----IVTRSFTS 161
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
++ + + D G Y AKN G
Sbjct: 162 LVFPNGVERKDAGFYVVCAKNRFG 185
Score = 59.0 bits (143), Expect = 1e-11
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
TL C V +PKPI W + +I +G +Y + K + +L I S++ D
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH----QLIIASVTDDDATV 76
Query: 76 YKCNAKNTLG 85
Y+ A N G
Sbjct: 77 YQVRATNQGG 86
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 64.5 bits (157), Expect = 3e-13
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L L C+V P P W N + ++ E + I +S +D G
Sbjct: 239 ALNLTCNVWGDPPPEVSWLK-NEKALASDDHCNLKFEAGRTA----YFTINGVSTADSGK 293
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y KN G V
Sbjct: 294 YGLVVKNKYGSETSDFTV 311
Score = 55.3 bits (133), Expect = 7e-10
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ L C V + K W + I ++ + L I SK D G
Sbjct: 23 NVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-------LLITEFSKKDAG 74
Query: 75 TYKCNAKNTLGGSEGVIKV 93
Y+ K+ G + +K+
Sbjct: 75 IYEVILKDDRGKDKSRLKL 93
Score = 51.1 bits (122), Expect = 2e-08
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 6/75 (8%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
W+H NGS I R L I + +D G Y
Sbjct: 128 YSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQI-----WLQINEPTPNDKGKYVM 181
Query: 79 NAKNTLGGSEGVIKV 93
+ G + + +
Sbjct: 182 ELFDGKTGHQKTVDL 196
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 61.4 bits (149), Expect = 4e-13
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
L L ++ V P P W H NG + E H+ + L
Sbjct: 13 SLEEPELRLEHCIEFVVRGNPPPTLHWLH-NGQPLRESKIIHVEYYQEGEISEGC-LLFN 70
Query: 67 SLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ + G Y AKN LG + I
Sbjct: 71 KPTHYNNGNYTLIAKNPLGTANQTING 97
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 60.8 bits (148), Expect = 4e-13
Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+D V P P W NG + + M + + L + SD G
Sbjct: 22 FCRMDFKVSGLPAPDVSWYL-NGRTVQSDDLHKMIVSEKGLH----SLIFEVVRASDAGA 76
Query: 76 YKCNAKNTLG 85
Y C AKN G
Sbjct: 77 YACVAKNRAG 86
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 60.9 bits (148), Expect = 5e-13
Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 2 IVIPSQL---IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK 58
I +P L ++ L L + P+P WT L + SR H+ T F +
Sbjct: 24 IRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL--DTSRVHVRTSDFDT-- 79
Query: 59 FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
++ ++SD G Y+ + + I++
Sbjct: 80 ---VFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 64.2 bits (156), Expect = 6e-13
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I Q + L C P P W +G I RY + +
Sbjct: 432 IRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL-DGKKIANNDRYQVGQYVTVNGDVVS 490
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I S+ +D G YKC AK+ +G +E K+
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 55.3 bits (133), Expect = 8e-10
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 13/87 (14%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P+ I + ++C P P W +G+ + + S +L
Sbjct: 45 PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ---ISSDG----KLV 97
Query: 65 IGSLSKSDF------GTYKCNAKNTLG 85
D+ Y C A+N G
Sbjct: 98 FPPFRAEDYRQEVHAQVYACLARNQFG 124
Score = 54.2 bits (130), Expect = 2e-09
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
LTL C V P+ WT +G I E L I ++ S G
Sbjct: 636 YLTLHCSVPGGDLPLNIDWTL-DGQAISEDLGITTSRVGRRGSV----LTIEAVEASHAG 690
Query: 75 TYKCNAKNTLGGSE 88
+ C+A+N G +
Sbjct: 691 NFTCHARNLAGHQQ 704
Score = 54.2 bits (130), Expect = 2e-09
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFG 74
L + C V YP W + + + ++ L I ++ + SD
Sbjct: 543 TLIVTCPVAGYPIDSIVWER-DNRALPINRKQKVFPNG--------TLIIENVERNSDQA 593
Query: 75 TYKCNAKNTLGGSE 88
TY C AKN G S
Sbjct: 594 TYTCVAKNQEGYSA 607
Score = 52.6 bits (126), Expect = 7e-09
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 4/93 (4%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + ++ + L C + YP P+ W + + ++
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTR--KQAVVLNDRVKQVSG- 306
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I D G Y C N++GG +
Sbjct: 307 -TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Score = 51.5 bits (123), Expect = 2e-08
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM---RLYIGSLSKSD 72
++C + +PKP W G E S + L++ ++ K++
Sbjct: 731 DAKVECKADGFPKPQVTWKKAVGDTPGEYKDLK------KSDNIRVEEGTLHVDNIQKTN 784
Query: 73 FGTYKCNAKNTLG 85
G Y C A N +G
Sbjct: 785 EGYYLCEAINGIG 797
Score = 50.7 bits (121), Expect = 3e-08
Identities = 15/70 (21%), Positives = 19/70 (27%), Gaps = 16/70 (22%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P C P W +G I L I S+ K D G
Sbjct: 360 PAVFTCQYTGNPIKTVSWMK-DGKAIGHSESV---------------LRIESVKKEDKGM 403
Query: 76 YKCNAKNTLG 85
Y+C +N
Sbjct: 404 YQCFVRNDRE 413
Score = 48.0 bits (114), Expect = 3e-07
Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 16/81 (19%)
Query: 16 PLTLDCHVESY---PKPITFWTHENGSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSL 68
+ C + S+ + W + +Y + L+I +
Sbjct: 155 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG--------ELHIREV 206
Query: 69 SKSD-FGTYKCNAKNTLGGSE 88
D + +Y+C K+ L G
Sbjct: 207 GPEDGYKSYQCRTKHRLTGET 227
Score = 29.9 bits (67), Expect = 0.39
Identities = 2/31 (6%), Positives = 6/31 (19%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ + + + A G
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANP 31
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 60.0 bits (146), Expect = 8e-13
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+P WT +G I +G +Y + +K L I SD G
Sbjct: 23 VAKFAVKATGEPRPTAIWTK-DGKAITQGGKYKLSEDKGGF-----FLEIHKTDTSDSGL 76
Query: 76 YKCNAKNTLG 85
Y C KN+ G
Sbjct: 77 YTCTVKNSAG 86
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 60.0 bits (146), Expect = 9e-13
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+V+S P W H NG + E S+ H L I D GT
Sbjct: 25 NTRFILNVQSKPTAEVKWYH-NGVELQESSKIHYTNTSGVL-----TLEILDCHTDDSGT 78
Query: 76 YKCNAKNTLG 85
Y+ N G
Sbjct: 79 YRAVCTNYKG 88
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 59.6 bits (145), Expect = 9e-13
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + V+ PKP+ W N + R + RL I + + D G
Sbjct: 22 DVIMSIRVQGEPKPVVSWLR-NRQPVRPDQRRFAEEAEGGLC----RLRILAAERGDAGF 76
Query: 76 YKCNAKNTLG 85
Y C A N G
Sbjct: 77 YTCKAVNEYG 86
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 62.3 bits (151), Expect = 1e-12
Identities = 19/96 (19%), Positives = 27/96 (28%), Gaps = 4/96 (4%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
+ A + L C + P W +G ++ + S
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKSTRAFSNSSYVLN 167
Query: 60 Y--MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L LS SD G Y C A+N G V
Sbjct: 168 PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
Score = 55.7 bits (134), Expect = 3e-10
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 2/95 (2%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + P+ L C + P W + G + T + ++
Sbjct: 7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
Query: 62 --RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ S+++ D GTY C G S G +KV
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 59.3 bits (144), Expect = 1e-12
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
C + P P W G ++ +R+ + T K+ S I S+ SD G
Sbjct: 31 SARFSCDTDGEPVPTVTWLR-KGQVLSTSARHQVTTTKYKS-----TFEISSVQASDEGN 84
Query: 76 YKCNAKNTLG 85
Y +N+ G
Sbjct: 85 YSVVVENSEG 94
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 60.6 bits (147), Expect = 1e-12
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
DC VE YP P W + + + E + + ++ + L I + D
Sbjct: 58 AARFDCKVEGYPDPEVMWFK-DDNPVKESRHFQIDYDEEGNC----SLTISEVCGDDDAK 112
Query: 76 YKCNAKNTLG 85
Y C A N+LG
Sbjct: 113 YTCKAVNSLG 122
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 61.3 bits (149), Expect = 2e-12
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ I + + C P+ I ++ G I R + E S
Sbjct: 5 VTISLSKVELSVGESKFFTCTAIGEPESIDWYNP-QGEKIISTQRVVVQKEGVRS----- 58
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
RL I + + D G Y+C A + G
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKG 82
Score = 56.3 bits (136), Expect = 1e-10
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ C V S P P W + + + S ++ L I +++KSD G
Sbjct: 113 DAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNN------LQILNINKSDEGI 165
Query: 76 YKCNAKNTLGGSEGV 90
Y+C + G
Sbjct: 166 YRCEGRVEARGEIDF 180
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 58.8 bits (143), Expect = 2e-12
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
V P P W NG I R + + + + L I ++ D +
Sbjct: 22 DAHFRVRVVGKPDPECEWYK-NGVKIERSDRIYWYWPEDNVC----ELVIRDVTGEDSAS 76
Query: 76 YKCNAKNTLG 85
A N G
Sbjct: 77 IMVKAINIAG 86
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 60.6 bits (147), Expect = 3e-12
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+T C P+P W NG LI E +Y + L + ++ SD G
Sbjct: 115 EMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTE-------LTVRNIINSDGGP 166
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N G E +
Sbjct: 167 YVCRATNKAGEDEKQAFL 184
Score = 54.8 bits (132), Expect = 3e-10
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGS-RYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ C V S P P W + N + R+ M L I +++KSD G
Sbjct: 19 DAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--------NLQILNINKSDEG 70
Query: 75 TYKCNAKNTLGGS 87
Y+C + G
Sbjct: 71 IYRCEGRVEARGE 83
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 60.5 bits (147), Expect = 3e-12
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I P + L C PKP W S + E SR +
Sbjct: 103 ITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENSRIAVLESG-------- 153
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I ++ K D G Y+C AKN+LG
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 55.1 bits (133), Expect = 2e-10
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I P + + A + T C VESYP+P WT + +RY +
Sbjct: 10 ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL------ 63
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87
L I S+ SD G Y C A N +GG+
Sbjct: 64 -LTILSVEDSDDGIYCCTANNGVGGA 88
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 60.5 bits (147), Expect = 3e-12
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L V P P+ + +G+ I + + S L I D GT
Sbjct: 120 QVRLQVRVTGIPTPVVKFYR-DGAEIQSSLDFQI-----SQEGDLYSLLIAEAYPEDSGT 173
Query: 76 YKCNAKNTLG 85
Y NA N++G
Sbjct: 174 YSVNATNSVG 183
Score = 58.6 bits (142), Expect = 2e-11
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
T + H+ +P P W +G +I + + + S +L I +++K++ G
Sbjct: 22 TATFEAHISGFPVPEVSWFR-DGQVISTSTLPGV---QISFSDGRAKLTIPAVTKANSGR 77
Query: 76 YKCNAKNTLG 85
Y A N G
Sbjct: 78 YSLKATNGSG 87
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 58.5 bits (142), Expect = 3e-12
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+DC V P P W +G + S + M + + L I ++ D G
Sbjct: 26 LCRMDCKVSGLPTPDLSWQL-DGKPVRPDSAHKMLVRENGVH----SLIIEPVTSRDAGI 80
Query: 76 YKCNAKNTLG 85
Y C A N G
Sbjct: 81 YTCIATNRAG 90
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 61.5 bits (149), Expect = 3e-12
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 3/93 (3%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + + C S + N + + + + Y+
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF---HNNRYQKV 244
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ L + + G Y C A N G +
Sbjct: 245 LTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
Score = 44.2 bits (104), Expect = 4e-06
Identities = 9/88 (10%), Positives = 18/88 (20%), Gaps = 9/88 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ +Q + L C + + G + + Y
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH------- 144
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
I Y+C+A
Sbjct: 145 -GFTIHRAKFIQSQDYQCSALMGGRKVM 171
Score = 38.4 bits (89), Expect = 4e-04
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 15/79 (18%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C + W + ++++ SS L + + + GT
Sbjct: 21 TVTLRCVGNG---SVE-WDGPPSP------HWTLYSDGSSSI-----LSTNNATFQNTGT 65
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y+C G I +Y
Sbjct: 66 YRCTEPGDPLGGSAAIHLY 84
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 60.7 bits (147), Expect = 4e-12
Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L L C+V P P W N + + ++ E + I +S +D G
Sbjct: 134 ALNLTCNVWGDPPPEVSWLK-NEKALAQTDHCNLKFEAGRTA----YFTINGVSTADSGK 188
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y KN G V
Sbjct: 189 YGLVVKNKYGSETSDFTV 206
Score = 52.2 bits (125), Expect = 4e-09
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 7/116 (6%)
Query: 17 LTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L V Y W+H NGS I R L I + +D G
Sbjct: 20 IQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVKTGVTGEQI-----WLQINEPTPNDKGK 73
Query: 76 YKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIA 131
Y + G + + + Y + ++ ++ + G
Sbjct: 74 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTI 129
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 61.4 bits (149), Expect = 5e-12
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + + P+ + C V+S P W + ++ + ++ K S M
Sbjct: 103 FISNQTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVLPAKNTTNL---KTYSTGRKM 158
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I S +DFG Y C A N +G +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
Score = 49.8 bits (119), Expect = 6e-08
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 16 PLTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+TL C E P P W +G EG + + L+I + SD G
Sbjct: 17 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76
Query: 75 TYKCNAKNTLGGSEGVIKV 93
Y C A + +GG + + +
Sbjct: 77 RYDCEAASRIGGHQKSMYL 95
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 57.7 bits (140), Expect = 5e-12
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ C +E+Y + W + +Y + E + LY+ ++K D G
Sbjct: 18 HVKYVCKIENYDQSTQVTWYF-GVRQLENSEKYEITYEDGVA-----ILYVKDITKLDDG 71
Query: 75 TYKCNAKNTLG 85
TY+C N G
Sbjct: 72 TYRCKVVNDYG 82
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo
sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 57.4 bits (139), Expect = 1e-11
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C V P P+ W G + R + L + + +D G
Sbjct: 30 EAELKCVVLGEPPPVVVWEK-GGQQLAASERLSFPADGAEH-----GLLLTAALPTDAGV 83
Query: 76 YKCNAKNTLG 85
Y C A+N G
Sbjct: 84 YVCRARNAAG 93
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 57.4 bits (139), Expect = 1e-11
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+T C V PKP +W + + + Y + + + L+ + + D G
Sbjct: 25 PVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC----SLHTTASTLDDDGN 80
Query: 76 YKCNAKNTLG 85
Y A N G
Sbjct: 81 YTIMAANPQG 90
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 57.0 bits (138), Expect = 1e-11
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + C P P W + + E S + + L I + K D G
Sbjct: 27 SIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRN-------LTIRRVRKEDEGL 78
Query: 76 YKCNAKNTLG 85
Y C A + LG
Sbjct: 79 YTCQACSVLG 88
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 58.9 bits (143), Expect = 1e-11
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C + P P W G + + +Y M ++ + L + + + D G
Sbjct: 24 AAQLSCQIVGRPLPDIKWYR-FGKELIQSRKYKMSSDGRTH-----TLTVMTEEQEDEGV 77
Query: 76 YKCNAKNTLG 85
Y C A N +G
Sbjct: 78 YTCIATNEVG 87
Score = 58.2 bits (141), Expect = 3e-11
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL-SKSDFG 74
L L P P W H L+ + + + Y L + ++ K+ G
Sbjct: 120 TLRLHVMYIGRPVPAMTWFH-GQKLLQNSENITI-----ENTEHYTHLVMKNVQRKTHAG 173
Query: 75 TYKCNAKNTLGGSEGVIKVY 94
YK N G + ++ V
Sbjct: 174 KYKVQLSNVFGTVDAILDVE 193
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 60.1 bits (145), Expect = 2e-11
Identities = 12/93 (12%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
V + + ++A +TL V++ W S ++ + + S
Sbjct: 51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF-KHSSLNCQPHFDLQNRGVVS----- 104
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ I ++++ G Y ++ + V
Sbjct: 105 -MVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 53.9 bits (129), Expect = 2e-09
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
PL + C W EN +L + + ++ S++++D G
Sbjct: 244 PLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303
Query: 75 TYKCNAKNTLGGSEGVIKVYNIGYF 99
Y C++ ++ + G+
Sbjct: 304 YYTCSSSKHP-SQSALVTIVEKGFI 327
Score = 52.0 bits (124), Expect = 9e-09
Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 10/93 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
S+ ++YP+ WT S +
Sbjct: 329 ATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSF----------PCEQKGLDNGY 378
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ K G Y +A+N + +
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 47.0 bits (111), Expect = 6e-07
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSL---SK 70
C + YP P W + E +W K + F + +L
Sbjct: 424 ASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEA 483
Query: 71 SDFGTYKCNAKNTLGGSEGVIKV 93
KC A N+LG S I +
Sbjct: 484 IKGFLVKCCAYNSLGTSCETILL 506
Score = 42.4 bits (99), Expect = 2e-05
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
L C ES P+PI W + ++ L + +
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQGESCKEESP----------AVVKKEEKVLHELFGTDIR 207
Query: 78 CNAKNTLG 85
C A+N LG
Sbjct: 208 CCARNELG 215
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 58.3 bits (141), Expect = 2e-11
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+T C P+P W NG LI E +Y + L + ++ SD G
Sbjct: 21 EMTFSCRASGSPEPAISWFR-NGKLIEENEKYILKGSNTE-------LTVRNIINSDGGP 72
Query: 76 YKCNAKNTLG 85
Y C A N G
Sbjct: 73 YVCRATNKAG 82
Score = 52.5 bits (126), Expect = 2e-09
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 16 PLTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+TL C E P P W +G EG + + L+I + SD G
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170
Query: 75 TYKCNAKNTLG 85
Y C A + +G
Sbjct: 171 RYDCEAASRIG 181
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 59.3 bits (143), Expect = 3e-11
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
T+ C ++ + W S +Y+ W +Y+ L I S +D G
Sbjct: 228 EFTVTCTIKDVSSSVYSTWKR-ENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSG 286
Query: 75 TYKCNAKNTLGGSE--GVIKVYNIGYFGSDTQYVTDEE 110
+ C A NT G + ++V + G+ T
Sbjct: 287 VFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVF 324
Score = 58.5 bits (141), Expect = 6e-11
Identities = 15/79 (18%), Positives = 30/79 (37%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L E++PKP + + +E S+ ++ L++ L ++ GT
Sbjct: 330 NVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGT 389
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y N+ + VY
Sbjct: 390 YTFLVSNSDVNAAIAFNVY 408
Score = 55.4 bits (133), Expect = 6e-10
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSR------YHMWTEKFSSYKFYMRLYIGSLS 69
L C +P+P W G+ + + + K ++ I S +
Sbjct: 423 NGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSA 482
Query: 70 KSDFGTYKCNAKNTLGGSEGVIKVY 94
GT +C A N +G +
Sbjct: 483 FKHNGTVECKAYNDVGKTSAYFNFA 507
Score = 40.8 bits (95), Expect = 6e-05
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 19/93 (20%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C + K WT E +E + ++ G
Sbjct: 53 EIRLLCTDPGFVK----WTFEILDETNENKQN--------------EWITEKAEATNTGK 94
Query: 76 YKCNAKNTLGGSEGV-IKVYNIGYFGSDTQYVT 107
Y C K+ L S V ++ + + Y
Sbjct: 95 YTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGK 127
Score = 39.3 bits (91), Expect = 2e-04
Identities = 6/83 (7%), Positives = 22/83 (26%), Gaps = 9/83 (10%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + + + + C + G + + R+ +
Sbjct: 116 KLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKA------- 168
Query: 61 MRLYIGSLSKS-DFGTYKCNAKN 82
+ I S+ ++ C+
Sbjct: 169 -GIMIKSVKRAYHRLCLHCSVDQ 190
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 59.0 bits (142), Expect = 3e-11
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 2/95 (2%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGS-RYHMWTEKFSSYK 58
++ +P + T+ C ++ + W N H +++ W +Y+
Sbjct: 190 VVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYE 249
Query: 59 FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I S D G + C A NT G + +
Sbjct: 250 RQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284
Score = 44.3 bits (104), Expect = 3e-06
Identities = 4/82 (4%), Positives = 17/82 (20%), Gaps = 7/82 (8%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + + + + C + +G + + +
Sbjct: 93 KLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGI----- 147
Query: 61 MRLYIGSLSKSDFGTYKCNAKN 82
+C A+
Sbjct: 148 --TIKNVKRAYHRLCVRCAAQR 167
Score = 35.1 bits (80), Expect = 0.006
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 17/72 (23%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L+L C + WT + ++ + + GT
Sbjct: 29 TLSLTCIDPD---FVR-WTFKTYFNEMVENKKN-------------EWIQEKAEATRTGT 71
Query: 76 YKCNAKNTLGGS 87
Y C+ N L S
Sbjct: 72 YTCSNSNGLTSS 83
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 59.0 bits (143), Expect = 3e-11
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
TL C V +PKPI W + +I +G +Y + K ++ L I S++ D
Sbjct: 21 NATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ----LIIASVTDDDATV 76
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y+ A N G G +
Sbjct: 77 YQVRATNQGGSVSGTASLE 95
Score = 57.8 bits (140), Expect = 7e-11
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM-WTEKFSSYKFYMRLYIGSLSKSDFG 74
+++ P P+ W LI Y + T F+S ++ + + D G
Sbjct: 121 VVSIKIPFSGKPDPVITWQK-GQDLIDNNGHYQVIVTRSFTS-----LVFPNGVERKDAG 174
Query: 75 TYKCNAKNTLGGSEGVIKV 93
Y AKN G + +++
Sbjct: 175 FYVVCAKNRFGIDQKTVEL 193
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 55.8 bits (135), Expect = 3e-11
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
LT+ C P P W+ G IH + + L I + K D G
Sbjct: 22 VLTVACAFTGEPTPEVTWSC-GGRKIHSQEQGRF---HIENTDDLTTLIIMDVQKQDGGL 77
Query: 76 YKCNAKNTLG 85
Y + N G
Sbjct: 78 YTLSLGNEFG 87
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 57.5 bits (139), Expect = 4e-11
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
++ + P+ L+C VE +P W +G+++ + ++ + F
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVK-DGAVVQNLDQLYIPVSEQHWIGF-- 61
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87
L + S+ +SD G Y C ++
Sbjct: 62 -LSLKSVERSDAGRYWCQVEDGGETE 86
Score = 45.2 bits (107), Expect = 1e-06
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 16/88 (18%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT-FWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + AP L C P+P+T W +
Sbjct: 101 FTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS-------------- 146
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
+ + + C A N G +
Sbjct: 147 -PSVLNVTGVTQSTMFSCEAHNLKGLAS 173
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 58.1 bits (140), Expect = 4e-11
Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 5/98 (5%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
S + L C P W +G + SS+
Sbjct: 106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKKTRAFMNSSFTI 164
Query: 60 YMR---LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ L ++ D G Y C A+N G + +
Sbjct: 165 DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
Score = 55.0 bits (132), Expect = 4e-10
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 2/95 (2%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + + L C + P W GS T ++ +
Sbjct: 4 VYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS 63
Query: 62 R--LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ S+++ D G Y C G + G + ++
Sbjct: 64 SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 56.1 bits (135), Expect = 4e-11
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDFGT 75
+ V+ P P W NGS+++E S + ++ + L + + + G
Sbjct: 19 CIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y A N G + I
Sbjct: 78 YTLLAANPFGQASASIMAA 96
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 58.9 bits (142), Expect = 4e-11
Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 7/93 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
V + + ++A +TL V++ W ++ SL + + + S
Sbjct: 51 TVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL-NCQPHFDLQNRGVVS----- 104
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ I ++++ G Y ++ + V
Sbjct: 105 -MVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 53.1 bits (127), Expect = 3e-09
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 10/80 (12%)
Query: 15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
++YP+ WT S E +S + K G
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLD---NGYS-------ISKFCNHKHQPG 391
Query: 75 TYKCNAKNTLGGSEGVIKVY 94
Y +A+N + +
Sbjct: 392 EYIFHAENDDAQFTKMFTLN 411
Score = 52.4 bits (125), Expect = 6e-09
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 16 PLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM-RLYIGSLSKSDF 73
PL + C W + EG+ + M T + + ++ S++++D
Sbjct: 244 PLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT 302
Query: 74 GTYKCNAKNTLGGSEGVIKVYNIGYF 99
G Y C++ S ++ + G+
Sbjct: 303 GYYTCSSSKHPSQS-ALVTIVEKGFI 327
Score = 37.7 bits (87), Expect = 7e-04
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
L C ES P+PI W + +K + L +D +
Sbjct: 158 ALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-------KVLHELFGTD---IR 207
Query: 78 CNAKNTLG 85
C A+N LG
Sbjct: 208 CCARNELG 215
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 56.1 bits (135), Expect = 4e-11
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT-FWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
I+ +Q A + C + S P P W+ + L S + +
Sbjct: 16 IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 75
Query: 61 MRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKVY 94
L I ++ ++DF T Y C A N+ G +I++
Sbjct: 76 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding,
immunoglobulin domain, kinase, membrane, nucleotid
binding; HET: NAG; 2.10A {Homo sapiens}
Length = 241
Score = 57.6 bits (139), Expect = 6e-11
Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
+ +L+ A + C P P W NG R + + L
Sbjct: 20 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQW----SL 74
Query: 64 YIGSLSKSDFGTYKCNAKNTLG 85
+ S+ SD G Y C +N G
Sbjct: 75 VMESVVPSDRGNYTCVVENKFG 96
Score = 52.2 bits (125), Expect = 5e-09
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHE---NGSLIHEGSRYHMWTEKFSSYKF---YMRLYIGSLS 69
+ C V S +P W NGS + ++ K + +RL + ++S
Sbjct: 131 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVS 190
Query: 70 KSDFGTYKCNAKNTLGGSE 88
+ D G Y C A N +G +E
Sbjct: 191 ERDGGEYLCRATNFIGVAE 209
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 58.3 bits (141), Expect = 7e-11
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ V + + A + L+C P P W +G I +R H
Sbjct: 207 IEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNG-------- 258
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I + + D G+Y+C A+N+ G + ++
Sbjct: 259 -ILEIPNFQQEDAGSYECVAENSRGKNVAKGQL 290
Score = 57.5 bits (139), Expect = 1e-10
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 9/74 (12%)
Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ L C + W + R+ LYI + KSD G
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG--------NLYIAKVEKSDVG 170
Query: 75 TYKCNAKNTLGGSE 88
Y C NT+ +
Sbjct: 171 NYTCVVTNTVTNHK 184
Score = 54.1 bits (130), Expect = 2e-09
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
V I + + +C PKP W NG + R +
Sbjct: 298 WVQIINDIHVAMEESVFWECKANGRPKPTYRWLK-NGDPLLTRDRIQIEQG--------- 347
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I ++ SD G Y+C A+N G
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHG 371
Score = 48.3 bits (115), Expect = 2e-07
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFG 74
+ L C V+ PKP W NG+ + G + S L I + +K D G
Sbjct: 25 KVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVDGS-------LLINNPNKTQDAG 76
Query: 75 TYKCNAKNTLG 85
TY+C A N+ G
Sbjct: 77 TYQCIATNSFG 87
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 54.8 bits (132), Expect = 7e-11
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
+L A + C P P W NG + R + + + L +
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHW----SLIME 70
Query: 67 SLSKSDFGTYKCNAKNTLG 85
S+ SD G Y C +N G
Sbjct: 71 SVVPSDKGNYTCVVENEYG 89
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 58.2 bits (140), Expect = 8e-11
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + C P P W + + E S + + L I + K D G
Sbjct: 683 SIEVSCTASGNPPPQIMWFK-DNETLVEDSGIVLKDGNRN-------LTIRRVRKEDEGL 734
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A + LG ++
Sbjct: 735 YTCQACSVLGCAKVEAFF 752
Score = 54.0 bits (129), Expect = 2e-09
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEG----SRYHMWTEKFSSY 57
++ PS I + L L+C + + E S H+ +R
Sbjct: 227 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 286
Query: 58 KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
KF L I +++SD G Y C A + L + V
Sbjct: 287 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 322
Score = 53.6 bits (128), Expect = 3e-09
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 11/73 (15%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + YP P W NG + L I +S+ D G
Sbjct: 347 RVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHV----------LTIMEVSERDTGN 395
Query: 76 YKCNAKNTLGGSE 88
Y N + +
Sbjct: 396 YTVILTNPISKEK 408
Score = 51.7 bits (123), Expect = 1e-08
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 14/93 (15%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIH--------------EGSRYHMWTEKFSSYKFYM 61
++L C + W + + T +S +
Sbjct: 566 SVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL 625
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ + + S D G Y C A++ +
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 47.4 bits (112), Expect = 4e-07
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 16 PLTLDCHVESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ + C ++ + +G+R ++K I S S G
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK--------GFTIPSYMISYAG 196
Query: 75 TYKCNAKNTLGGSE 88
C AK +
Sbjct: 197 MVFCEAKINDESYQ 210
Score = 42.8 bits (100), Expect = 2e-05
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ I ++ + L + C + W N E + S F
Sbjct: 34 LSIQKDILTIKANTTLQITCRGQRDLD----WLWPNNQSGSEQRVEV---TECSDGLFCK 86
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I + +D G YKC + T S + V
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118
Score = 42.4 bits (99), Expect = 2e-05
Identities = 17/107 (15%), Positives = 25/107 (23%), Gaps = 28/107 (26%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTE---------------------- 52
TL C V + P P W + +
Sbjct: 440 TQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEV 499
Query: 53 -----KFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
K + + + YKC A N +G E VI +
Sbjct: 500 NKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546
Score = 29.0 bits (64), Expect = 0.73
Identities = 2/29 (6%), Positives = 6/29 (20%)
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ S + C + +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSL 29
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 57.9 bits (140), Expect = 9e-11
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + A + + +C V P P W NG ++ + +
Sbjct: 315 FLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK-NGDVVIPSDYFQIVGGS-------- 365
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I + KSD G Y+C A+N G
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAG 389
Score = 52.1 bits (125), Expect = 8e-09
Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + A L+C V YP P W + +Y + S+
Sbjct: 223 YFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG--SN---- 276
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
L I +++ D GTY C
Sbjct: 277 --LLISNVTDDDSGTYTCVVTYKNE 299
Score = 52.1 bits (125), Expect = 8e-09
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSL--IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
+ L C V P P W L I SR + S L I L D
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV----LPSGA----LQISRLQPGDS 189
Query: 74 GTYKCNAKNTLG 85
G Y+C+A+N
Sbjct: 190 GVYRCSARNPAS 201
Score = 46.0 bits (109), Expect = 1e-06
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 16 PLTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ L+C E P+ W +G ++ G S + K D G
Sbjct: 38 NVLLNCSAESDRGVPVIKWKK-DGLILALGMDDRKQQLPNGSLLI-QNILHSRHHKPDEG 95
Query: 75 TYKCNAKNTLGGS----EGVIKVYNIGYFGSDTQYVT 107
Y+C A GS + V F S T+ +T
Sbjct: 96 LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESIT 132
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 56.8 bits (137), Expect = 1e-10
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
+ +L A + C P P W NG + R + + + L
Sbjct: 24 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK-NGKEFKQEHRIGGYKVRNQHW----SL 78
Query: 64 YIGSLSKSDFGTYKCNAKNTLG 85
+ S+ SD G Y C +N G
Sbjct: 79 IMESVVPSDKGNYTCVVENEYG 100
Score = 50.7 bits (121), Expect = 2e-08
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 5/73 (6%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR-----LYIGSLSKSD 72
C V S +P W + + K + L + +++++D
Sbjct: 137 EFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEAD 196
Query: 73 FGTYKCNAKNTLG 85
G Y C N +G
Sbjct: 197 AGEYICKVSNYIG 209
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 57.5 bits (138), Expect = 1e-10
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 12/94 (12%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + L C ++ P + WT NGSL K +
Sbjct: 235 TIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLP-----------KGVEAQNR 283
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
+ G ++ S GTY C A N +G G ++V
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Score = 35.1 bits (80), Expect = 0.006
Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 16/102 (15%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT----FWTHENGSLIHEGSRYHMWTEKFSSY 57
+V + + + + L C + + W + Y+
Sbjct: 17 VVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLA 76
Query: 58 KFYMR------------LYIGSLSKSDFGTYKCNAKNTLGGS 87
+ R + + L D G Y C G+
Sbjct: 77 PYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGN 118
Score = 30.5 bits (68), Expect = 0.22
Identities = 10/80 (12%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 16 PLTLDCHV-ESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
L C P + W G ++ R T S R + ++
Sbjct: 152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS-----RYRLVPSREAHQ 206
Query: 74 GTYKCNAKNTLGGSEGVIKV 93
+ C + + + +
Sbjct: 207 QSLACIVNYHMDRFKESLTL 226
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 56.2 bits (135), Expect = 1e-10
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI---HEGSRYHMWTEKFSSY 57
+ + S+ + LT+ C V ++P P W G
Sbjct: 106 TLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK----EKDG 161
Query: 58 KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGV 90
+ + SL K C KN + GV
Sbjct: 162 SLSVAV-DLSLPKPWHLPVTCVGKNDKEEAHGV 193
Score = 30.0 bits (67), Expect = 0.25
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 20/77 (25%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+ D +P F H + + L + + + S G Y
Sbjct: 43 MHHDVIFIEWPFRGFFDIHRSANTF--------------------FLVVTAANISHDGNY 82
Query: 77 KCNAKNTLGGSEGVIKV 93
C K +
Sbjct: 83 LCRMKLGETEVTKQEHL 99
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 56.4 bits (136), Expect = 1e-10
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + C V +YP W +G L+ + ++ K + L + S++DFG
Sbjct: 35 QVNITCEVFAYPSATISWFR-DGQLLPSSNYSNI---KIYNTPSASYLEVTPDSENDFGN 90
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N +G +
Sbjct: 91 YNCTAVNRIGQESLEFIL 108
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 54.2 bits (131), Expect = 1e-10
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C + P+ W + I + +Y + E + L I S D G
Sbjct: 25 DVELRCELSRAGTPVH-WLK-DRKAIRKSQKYDVVCEGTMA-----MLVIRGASLKDAGE 77
Query: 76 YKCNAKNTLG 85
Y C + +
Sbjct: 78 YTCEVEASKS 87
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 55.6 bits (134), Expect = 2e-10
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ C V S P W H+ +I + + L I + K+D GT
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY-------LQIRGIKKTDEGT 169
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y+C + G +
Sbjct: 170 YRCEGRILARGEINFKDIQ 188
Score = 54.1 bits (130), Expect = 7e-10
Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 6/86 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT-FWTHENGSLIHEGS-RYHMWTEKFSSYKF 59
+ I + C V K W NG + R + S
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST- 63
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLG 85
L I + + D G YKC G
Sbjct: 64 ---LTIYNANIDDAGIYKCVVTAEDG 86
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 53.6 bits (129), Expect = 2e-10
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L L C + + I W +G + E +R + E + + +D G
Sbjct: 20 LLQLRCRLRDDVQSIN-WLR-DGVQLAESNRTRITGE---------EVEVQDSVPADSGL 68
Query: 76 YKCNAKNTLG 85
Y C + G
Sbjct: 69 YACVTSSPSG 78
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 53.5 bits (129), Expect = 2e-10
Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C V P P W NG I +R L+I D GT
Sbjct: 28 DFVLQCSVRGTPVPRITWLL-NGQPIQY-ARSTCEAGVAE-------LHIQDALPEDHGT 78
Query: 76 YKCNAKNTLG 85
Y C A+N LG
Sbjct: 79 YTCLAENALG 88
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 56.5 bits (136), Expect = 2e-10
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ L C V + K W + I ++ + L I SK D G
Sbjct: 238 NVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-------LLITEFSKKDAG 289
Query: 75 TYKCNAKNTLG 85
Y+ K+ G
Sbjct: 290 IYEVILKDDRG 300
Score = 54.6 bits (131), Expect = 1e-09
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 15 APLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
L +C PK W+ + + R + ++ + ++ L D G
Sbjct: 19 ISLNFECDK-MTPKSEFSWSK-DYVSTEDSPRLEVESKGNKT-----KMTFKDLGMDDLG 71
Query: 75 TYKCNAKNTLGGSE 88
Y C+ +T G +
Sbjct: 72 IYSCDVTDTDGIAS 85
Score = 53.1 bits (127), Expect = 3e-09
Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 18 TLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
E + N I EG +Y M + +++ L D GTY
Sbjct: 126 RFWMQAEKLSGNAKVNYIF-NEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 77 KCNAKNTLG 85
++
Sbjct: 182 TFQLQDGKA 190
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 56.5 bits (136), Expect = 3e-10
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
P++++ R P L+C +E + + + W +G + + S L
Sbjct: 13 PAEVL-FRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAALRKDEGS------L 64
Query: 64 YIGSLSKSDFGTYKCNAKNTLG---GSEGVIKVYNIGYFGSDTQYVTDEE 110
SD G Y+C A+ G + + + T T E
Sbjct: 65 VFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIE 114
Score = 54.5 bits (131), Expect = 1e-09
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 6/89 (6%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSL-IHEGSRYHMWTEKFSSYKF 59
+ S+ + A+ + C S P + + + R
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK--- 270
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
RL + D G Y C N +G +
Sbjct: 271 --RLLFKTTLPEDEGVYTCEVDNGVGKPQ 297
Score = 53.4 bits (128), Expect = 3e-09
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
P ++I + +T+ C V P P W+H N + G R +
Sbjct: 312 EQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGG-RATVTDS--------- 360
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I + D G Y C A N G
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHG 384
Score = 47.2 bits (112), Expect = 4e-07
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK---S 71
P LDC + +YPKP+ W S + + + ++ LY ++K S
Sbjct: 117 PFQLDCVLPNAYPKPLITWKK-RLSGADPNADVTDFDRRITAGPDG-NLYFTIVTKEDVS 174
Query: 72 DFGTYKCNAKNTLGGSEGVIKVYNI 96
D Y C AKN E V+ Y I
Sbjct: 175 DIYKYVCTAKNAAVDEEVVLVEYEI 199
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 56.5 bits (136), Expect = 3e-10
Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 11/108 (10%)
Query: 16 PLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ L C P T W +G+ + R + ++ L + + S D G
Sbjct: 25 AVELSCPPPGGGPMGPTVWVK-DGTGLVPSERVLVGPQR---------LQVLNASHEDSG 74
Query: 75 TYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKW 122
Y C + T D + DE W
Sbjct: 75 AYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYW 122
Score = 55.8 bits (134), Expect = 4e-10
Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
+L+ A + C P P W NG R + + L +
Sbjct: 131 KLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGIKLRHQQW----SLVME 185
Query: 67 SLSKSDFGTYKCNAKNTLG 85
S+ SD G Y C +N G
Sbjct: 186 SVVPSDRGNYTCVVENKFG 204
Score = 54.2 bits (130), Expect = 1e-09
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 16 PLTLDCHVESYPKPITFWTHE---NGSLIHEGSRYHMWTEKFSSYKFYMR----LYIGSL 68
+ C V S +P W NGS + ++ K + + L + ++
Sbjct: 239 DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298
Query: 69 SKSDFGTYKCNAKNTLG 85
+ D G Y C A N++G
Sbjct: 299 TFEDAGEYTCLAGNSIG 315
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 56.5 bits (136), Expect = 3e-10
Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I R L L CH S P W NG+
Sbjct: 206 PTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQE--------------- 249
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT 107
L+I +++ ++ G+Y C A N+ G Y ++T
Sbjct: 250 -LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFIT 294
Score = 56.1 bits (135), Expect = 4e-10
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + C E+ +W NG + R + +
Sbjct: 469 PSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV--NGQSLPVSPRLQLSNGNRT----- 521
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L + +++++D Y C +N++ +
Sbjct: 522 --LTLFNVTRNDARAYVCGIQNSVSANR 547
Score = 55.7 bits (134), Expect = 5e-10
Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+I A L L CH S P P W NG
Sbjct: 562 PIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI-NGIPQQHTQV--------------- 605
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L+I ++ ++ GTY C N G
Sbjct: 606 -LFIAKITPNNNGTYACFVSNLATGRN 631
Score = 54.6 bits (131), Expect = 1e-09
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 17/87 (19%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I R L+L CH S P W +G++
Sbjct: 384 PTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQE--------------- 427
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L+I ++++ + G Y C A N+ G
Sbjct: 428 -LFISNITEKNSGLYTCQANNSASGHS 453
Score = 50.7 bits (121), Expect = 3e-08
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 9/86 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + + C E+ +W N + R + +
Sbjct: 114 SISSNNSKPVEDKDAVAFTCEPETQDATYLWWV--NNQSLPVSPRLQLSNGNRT------ 165
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGS 87
L + +++++D +YKC +N +
Sbjct: 166 -LTLFNVTRNDTASYKCETQNPVSAR 190
Score = 49.2 bits (117), Expect = 1e-07
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ + + L C E +W N + R + + +
Sbjct: 292 FITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV--NNQSLPVSPRLQLSNDNRT------ 343
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L + S++++D G Y+C +N L
Sbjct: 344 -LTLLSVTRNDVGPYECGIQNELSVDH 369
Score = 47.6 bits (113), Expect = 3e-07
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 10/85 (11%)
Query: 16 PLTLDCHVESYPKPITFWTH-ENGSLIHEGSRYHMWTEKFSSYKFYMR---------LYI 65
+ L H W E + Y + T++ + Y L I
Sbjct: 16 EVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLI 75
Query: 66 GSLSKSDFGTYKCNAKNTLGGSEGV 90
++ ++D G Y + + +E
Sbjct: 76 QNIIQNDTGFYTLHVIKSDLVNEEA 100
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 55.2 bits (133), Expect = 4e-10
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + + + C P P +W N + + + + +
Sbjct: 113 ITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNPRYSLKDG-------- 163
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I + + D G Y+C A+N++G
Sbjct: 164 FLQIENSREEDQGKYECVAENSMG 187
Score = 50.2 bits (120), Expect = 3e-08
Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYI-GSLSKSDFG 74
+ C P P W + SRY + + L I + D
Sbjct: 23 VASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG----ISILRIEPVRAGRDDA 78
Query: 75 TYKCNAKNTLG 85
Y+C A+N +G
Sbjct: 79 PYECVAENGVG 89
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 52.4 bits (126), Expect = 6e-10
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I+ + L C P P+ W E + R + E+ +
Sbjct: 11 ILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI-QEQGT------ 63
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I +L SD GTY C A ++ G
Sbjct: 64 -LQIKNLRISDTGTYTCVATSSSG 86
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 54.2 bits (130), Expect = 7e-10
Identities = 15/83 (18%), Positives = 20/83 (24%), Gaps = 16/83 (19%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
LTL P G I G L + L D GT
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 157
Query: 76 YKCNAKNTLGGSEGVIKVYNIGY 98
+ C E I + + +
Sbjct: 158 WTCTVLQNQKKVEFKIDIVVLAF 180
Score = 43.4 bits (102), Expect = 5e-06
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM------WTEKFSSYKFYMR-----LY 64
+ L C W + N I + ++ S + L
Sbjct: 12 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 71
Query: 65 IGSLSKSDFGTYKCNAKN 82
I +L D TY C ++
Sbjct: 72 IKNLKIEDSDTYICEVED 89
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 52.5 bits (126), Expect = 7e-10
Identities = 16/85 (18%), Positives = 21/85 (24%), Gaps = 8/85 (9%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+I + L C P P W + + + SR
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLEN--GV---- 63
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
L I D G Y C A G
Sbjct: 64 --LQIRYAKLGDTGRYTCIASTPSG 86
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 54.7 bits (131), Expect = 9e-10
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 21/98 (21%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSL----IHEGSRYHMWTEKFSS 56
+ TL C S P+P + W+ G L + +G++
Sbjct: 220 SISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQ---------- 269
Query: 57 YKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
L I + K T CN N LG + + V
Sbjct: 270 ------LLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 38.9 bits (90), Expect = 2e-04
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 17/104 (16%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT-----FWTHEN------------GSLIHEG 44
+V + L +TL C+++ +T W G E
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 45 SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
R + + L + L D G Y C GS
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSR 106
Score = 33.9 bits (77), Expect = 0.016
Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 4/80 (5%)
Query: 16 PLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
C P W + G + + + + + S+ D
Sbjct: 134 VPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTS---LWILVPSSQVDGK 190
Query: 75 TYKCNAKNTLGGSEGVIKVY 94
C ++ ++ V
Sbjct: 191 NVTCKVEHESFEKPQLLTVN 210
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 54.1 bits (130), Expect = 9e-10
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + QL T+ C P P W + + + + S
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDTSNNNGRIKQLRSESIG-- 167
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I +SD G Y+C A N+ G
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAG 191
Score = 51.7 bits (124), Expect = 6e-09
Identities = 16/85 (18%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
P + C P+P W G + + + S
Sbjct: 10 TRTPVDQT-GVSGGVASFICQATGDPRPKIVWNK-KGKKVSNQRFEVIEFDDGSGS---- 63
Query: 62 RLYIGSL-SKSDFGTYKCNAKNTLG 85
L I L + D Y+C A N +G
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVG 88
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 54.1 bits (130), Expect = 1e-09
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + QL T+ C P P W + + + + S
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQLRSG----- 164
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L I S ++D G Y+C A N+ G
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRY 191
Score = 51.4 bits (123), Expect = 1e-08
Identities = 12/84 (14%), Positives = 19/84 (22%), Gaps = 12/84 (14%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + + C P P W + +
Sbjct: 208 FSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ-GAEDLTPEDDMPV-----------G 255
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
R + D Y C A ++LG
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLG 279
Score = 47.9 bits (114), Expect = 3e-07
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL-SKSDFG 74
+ C PKP W + + + + E + L I L + D
Sbjct: 23 VASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV-----LRIQPLRTPRDEN 77
Query: 75 TYKCNAKNTLG 85
Y+C A+N++G
Sbjct: 78 VYECVAQNSVG 88
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 54.5 bits (131), Expect = 2e-09
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L L+C P P W + G L + +++ + + L I ++S+ D G
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNK---------ALRITNVSEEDSGE 289
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A N +G I V
Sbjct: 290 YFCLASNKMGSIRHTISV 307
Score = 54.1 bits (130), Expect = 2e-09
Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C PKP W NG + + + S
Sbjct: 329 DGRLVCRANGNPKPTVQWMV-NGEPLQSAPPNPNREVAGDT------IIFRDTQISSRAV 381
Query: 76 YKCNAKNTLG 85
Y+CN N G
Sbjct: 382 YQCNTSNEHG 391
Score = 52.6 bits (126), Expect = 6e-09
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD-F 73
PLTL C+ P P+ FW + I + R LY ++ D
Sbjct: 133 PLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG--------DLYFSNVMLQDMQ 184
Query: 74 GTYKCNAKNTLGGS 87
Y CNA+ +
Sbjct: 185 TDYSCNARFHFTHT 198
Score = 49.9 bits (119), Expect = 5e-08
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ ++C + P P WT N + + + S + G + G
Sbjct: 34 NILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRRSG-TLVIDFRSGGRPEEYEGE 91
Query: 76 YKCNAKNTLG 85
Y+C A+N G
Sbjct: 92 YQCFARNKFG 101
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 54.1 bits (130), Expect = 2e-09
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ A + + L C P+P W +G + +R +
Sbjct: 297 WLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR-DGQPLASQNRIEVSGG--------- 346
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L L D G Y+C A+N G
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHG 370
Score = 51.8 bits (124), Expect = 1e-08
Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
+ C YP W +G R+ T LYI SD
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--------NLYIAKTEASD 169
Query: 73 FGTYKCNAKNTLGGSE 88
G Y C A + +
Sbjct: 170 LGNYSCFATSHIDFIT 185
Score = 48.7 bits (116), Expect = 1e-07
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 12/93 (12%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ A +TL+C P P W +GS S++
Sbjct: 209 IKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT---SKWLSSE--------- 256
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L+I ++ D GTY+C A+N G ++
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Score = 45.6 bits (108), Expect = 2e-06
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C + P W NG+ + G + + + + D G+
Sbjct: 24 KVTLTCRARANPPATYRWKM-NGTELKMGPDSRY---RLVAGDLVI---SNPVKAKDAGS 76
Query: 76 YKCNAKNTLG 85
Y+C A N G
Sbjct: 77 YQCVATNARG 86
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 51.2 bits (123), Expect = 2e-09
Identities = 12/81 (14%), Positives = 17/81 (20%), Gaps = 7/81 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
C V W NG + R + +L I + D G
Sbjct: 25 QAVFKCEVSDEKVTGK-WYK-NGVEVRPSKRITISHVGRFH-----KLVIDDVRPEDEGD 77
Query: 76 YKCNAKNTLGGSEGVIKVYNI 96
Y + I
Sbjct: 78 YTFVPDGYALSLSAKLNFLEI 98
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 51.6 bits (124), Expect = 2e-09
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
T C + W + + +H + + + L + L+ D GT
Sbjct: 32 TFRCRISPANYEPVHWFL-DKTPLHANELNEIDAQPGGYH----VLTLRQLALKDSGTIY 86
Query: 78 CNAKNT 83
A +
Sbjct: 87 FEAGDQ 92
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 51.0 bits (122), Expect = 2e-09
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L L C + + I W +G + E +R + E + + +D G
Sbjct: 26 LLQLRCRLRDDVQSIN-WLR-DGVQLVESNRTRITGE---------EVEVRDSIPADSGL 74
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C + G V
Sbjct: 75 YACVTSSPSGSDTTYFSV 92
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein;
1.85A {Homo sapiens}
Length = 207
Score = 53.0 bits (127), Expect = 2e-09
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 19 LDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKC 78
+ + N I EG +Y M + +++ L D GTY
Sbjct: 23 WMQAEKLSGNAKVNYIF-NEKEIFEGPKYKM---HIDRNTGIIEMFMEKLQDEDEGTYTF 78
Query: 79 NAKNTLGGSE 88
++ +
Sbjct: 79 QLQDGKATNH 88
Score = 52.6 bits (126), Expect = 3e-09
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ L C V + K W + I ++ + L I SK D G
Sbjct: 133 NVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICT-------LLITEFSKKDAG 184
Query: 75 TYKCNAKNTLGGSEGVIKV 93
Y+ K+ G + +K+
Sbjct: 185 IYEVILKDDRGKDKSRLKL 203
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 54.0 bits (129), Expect = 2e-09
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--LYIGSLSKSDFG 74
+ V+ P P W NGS+++E S + ++ + L + + + G
Sbjct: 264 WCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322
Query: 75 TYKCNAKNTLGGSEGVIKV 93
Y A N G + I
Sbjct: 323 NYTLLAANPFGQASASIMA 341
Score = 50.9 bits (121), Expect = 2e-08
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 7/94 (7%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + + L C VE W +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL----- 214
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
S + C A+N +G +E ++V
Sbjct: 215 --TLANVTSDLNRKNVTCWAENDVGRAEVSVQVN 246
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 52.9 bits (126), Expect = 2e-09
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITF-WTHENGSLIHEG--SRYHMWTEKFSSY 57
++ PS I + L L+C + I F W + + H+ +R
Sbjct: 108 VLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 167
Query: 58 KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
KF L I +++SD G Y C A + L + V
Sbjct: 168 KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 33.6 bits (76), Expect = 0.014
Identities = 10/67 (14%), Positives = 14/67 (20%), Gaps = 7/67 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + C ++ W K I S S G
Sbjct: 26 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG-------FTIPSYMISYAGM 78
Query: 76 YKCNAKN 82
C AK
Sbjct: 79 VFCEAKI 85
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 53.4 bits (128), Expect = 3e-09
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 13/87 (14%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P+ I + ++C P P W +G+ + + + L
Sbjct: 10 PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK-------LV 62
Query: 65 IGSLSKSDF------GTYKCNAKNTLG 85
D+ Y C A+N G
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFG 89
Score = 51.5 bits (123), Expect = 2e-08
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + + +A ++L C + +P P W + + ++ +
Sbjct: 214 TPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTR--KQAVVLNDRVK--QVS 269
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I D G Y C N++GG +
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302
Score = 49.9 bits (119), Expect = 5e-08
Identities = 16/84 (19%), Positives = 20/84 (23%), Gaps = 16/84 (19%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I P C P W +G I
Sbjct: 310 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES--------------- 353
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L I S+ K D G Y+C +N
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRE 377
Score = 46.5 bits (110), Expect = 7e-07
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 16 PLTLDCHVESY---PKPITFWTHENGSLI----HEGSRYHMWTEKFSSYKFYMRLYIGSL 68
+ C + S+ + W + +Y + S + L+I +
Sbjct: 120 SAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV----LPSGE----LHIREV 171
Query: 69 SKSD-FGTYKCNAKNTLGGSE 88
D + +Y+C K+ L G
Sbjct: 172 GPEDGYKSYQCRTKHRLTGET 192
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 53.2 bits (127), Expect = 3e-09
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C V WT+ + Y L+I S D GT
Sbjct: 198 NITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP-YHIRSILHIPSAELEDSGT 256
Query: 76 YKCNAKNTLG 85
Y CN ++
Sbjct: 257 YTCNVTESVN 266
Score = 38.9 bits (90), Expect = 2e-04
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C + P+ W + E ++ F L + +L+ D G
Sbjct: 17 TFVLTCSGSA---PVV-WERMSQEPPQEMAKAQ-------DGTFSSVLTLTNLTGLDTGE 65
Query: 76 YKCNAKNTLG 85
Y C ++ G
Sbjct: 66 YFCTHNDSRG 75
Score = 34.3 bits (78), Expect = 0.011
Identities = 12/93 (12%), Positives = 21/93 (22%), Gaps = 18/93 (19%)
Query: 4 IPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
I +T+ C V P+ + + G +
Sbjct: 100 AEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPY---------------DH 143
Query: 64 YIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96
G + +Y C G E Y +
Sbjct: 144 QRGFSGIFEDRSYICKTTI--GDREVDSDAYYV 174
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 50.4 bits (121), Expect = 3e-09
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
TL C + S P+ W + +++ G +Y + E L + +L D G
Sbjct: 25 AATLRCVLSSVAAPVK-WCY-GNNVLRPGDKYSLRQEGAML-----ELVVRNLRPQDSGR 77
Query: 76 YKCNAKNT 83
Y C+ +
Sbjct: 78 YSCSFGDQ 85
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 53.0 bits (127), Expect = 4e-09
Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + + + C + + + + + YK
Sbjct: 189 IKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNS---DFQDNYYKKVR 245
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L + ++ D G Y C A N +G +
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNF 277
Score = 44.2 bits (104), Expect = 4e-06
Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 9/87 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESY-PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ +Q + L C + K E G + + Y +
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR------- 144
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGS 87
I D TY C S
Sbjct: 145 -GFIIRKAKVLDSNTYVCKTMVNGRES 170
Score = 39.5 bits (92), Expect = 2e-04
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 15/79 (18%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C + W E S L + + + GT
Sbjct: 21 TVTLRCVSNG---SVE-WDGPISPYWTLDP------ESPGS-----TLTTRNATFKNTGT 65
Query: 76 YKCNAKNTLGGSEGVIKVY 94
Y+C I +Y
Sbjct: 66 YRCTELEDPMAGSTTIHLY 84
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 52.6 bits (126), Expect = 4e-09
Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 15/84 (17%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + + + L C +P W N + + +
Sbjct: 21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS--------------- 65
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLG 85
L ++ D G Y C N
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFT 89
Score = 48.7 bits (116), Expect = 7e-08
Identities = 12/70 (17%), Positives = 18/70 (25%), Gaps = 15/70 (21%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L L C P P W N + ++ + + GT
Sbjct: 135 TLVLQCVAVGSPIPHYQWFK-NELPLTHETKK--------------LYMVPYVDLEHQGT 179
Query: 76 YKCNAKNTLG 85
Y C+ N
Sbjct: 180 YWCHVYNDRD 189
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 53.3 bits (127), Expect = 4e-09
Identities = 20/120 (16%), Positives = 30/120 (25%), Gaps = 17/120 (14%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
LTL P G I G L + L D GT
Sbjct: 113 SLTLTLESPPGSSPSVQCRSPRGKNIQGGK----------------TLSVSQLELQDSGT 156
Query: 76 YKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKW 135
+ C E I + + F + V +E ++ + E+ W
Sbjct: 157 WTCTVLQNQKKVEFKIDI-VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWW 215
Score = 47.5 bits (112), Expect = 4e-07
Identities = 7/88 (7%), Positives = 19/88 (21%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
L S K + +N + + + ++ L + G
Sbjct: 213 LWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNL 272
Query: 77 KCNAKNTLGGSEGVIKVYNIGYFGSDTQ 104
+ G + + +
Sbjct: 273 TLALEAKTGKLHQEVNLVVMRATQLQKN 300
Score = 42.1 bits (98), Expect = 2e-05
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHM------WTEKFSSYKFYMR-----LY 64
+ L C W + N I + ++ S + L
Sbjct: 11 TVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLI 70
Query: 65 IGSLSKSDFGTYKCNAKN 82
I +L D TY C ++
Sbjct: 71 IKNLKIEDSDTYICEVED 88
Score = 35.2 bits (80), Expect = 0.005
Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 15/67 (22%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C V P + + + + S+ R + + G
Sbjct: 298 QKNLTCEVWGPTSPKLMLSLKLENKEAKVSK---------------REKAVWVLNPEAGM 342
Query: 76 YKCNAKN 82
++C +
Sbjct: 343 WQCLLSD 349
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.0 bits (124), Expect = 4e-09
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 2/95 (2%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKF 59
+ L C ES P + W S SS +
Sbjct: 85 RVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQG 144
Query: 60 YMRLYIGSLS-KSDFGTYKCNAKNTLGGSEGVIKV 93
L+I +L+ ++D G Y+CN ++ G + +I +
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 44.2 bits (104), Expect = 3e-06
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 15/74 (20%)
Query: 16 PLTLDCHVESYPKPIT--FWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
+ L C + +T W G ++ E + + S +
Sbjct: 15 KILLTCSLNDSATEVTGHRWLK-GGVVLKEDA------------LPGQKTEFKVDSDDQW 61
Query: 74 GTYKCNAKNTLGGS 87
G Y C G+
Sbjct: 62 GEYSCVFLPEPMGT 75
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 49.6 bits (119), Expect = 5e-09
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 7/65 (10%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
+ + S P W G + + + L + + G
Sbjct: 24 HFEIEL-SEPDVHGQWKL-KGQPLAASPDCEIIEDGKKH-----ILILHNCQLGMTGEVS 76
Query: 78 CNAKN 82
A N
Sbjct: 77 FQAAN 81
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 52.2 bits (125), Expect = 5e-09
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P TL+C VE P+P W +G + + + F + + + D G
Sbjct: 26 PATLNCKVEGKPEPTIEWFK-DGEPVSTNEKKSHRVQ-FKDGALFFYRTMQGKKEQDGGE 83
Query: 76 YKCNAKNTLG 85
Y C AKN +G
Sbjct: 84 YWCVAKNRVG 93
Score = 46.8 bits (111), Expect = 4e-07
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 2 IVIPSQLIGARLAAPLTLDCH-VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + L+C + P+P W +G + +
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDDLKAMSFGASSRVRIVDG 169
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
L I ++ D G YKC A+N +G
Sbjct: 170 GNLLISNVEPIDEGNYKCIAQNLVG 194
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 49.7 bits (119), Expect = 6e-09
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+V+ + +TL C V + P P W + L S
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPV-------------- 58
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
L + + D GTY C A ++ G +
Sbjct: 59 -LILPEIGPQDQGTYSCVATHSSHGPQ 84
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 52.4 bits (125), Expect = 6e-09
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYH-------MWTEK 53
++ ++ + L + + L C+V I +W NGS+I E
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKW-NGSVIDEDDPVLGEDYYSVENPAN 269
Query: 54 FSSYKFYMRLYIGSLSKSDF-GTYKCNAKNTLGGSEGVIKV 93
L I + + + C AKNT G I++
Sbjct: 270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
Score = 47.4 bits (112), Expect = 4e-07
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
L P E+ P W + L+ + + + RL + ++++
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---------RLIVMNVAE 171
Query: 71 SDFGTYKCNAKNTLGGSEGVIK 92
G Y C+A T G + I
Sbjct: 172 KHRGNYTCHASYTYLGKQYPIT 193
Score = 43.2 bits (101), Expect = 8e-06
Identities = 11/80 (13%), Positives = 19/80 (23%), Gaps = 9/80 (11%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSL-IHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
C + T W ++ + + K L+ D
Sbjct: 22 IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-------LWFVPAKVEDS 74
Query: 74 GTYKCNAKNTLGGSEGVIKV 93
G Y C +N+ I
Sbjct: 75 GHYYCVVRNSSYCLRIKISA 94
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 51.4 bits (123), Expect = 7e-09
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
IV+ + + A + +TL+C P P W + +
Sbjct: 116 IVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMPSTAEISTSGA--------- 165
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
L I ++ D G Y+C A+N G + ++Y
Sbjct: 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 48.0 bits (114), Expect = 1e-07
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 16 PLTLDCHVE-SYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
+ L C +P +++ W + + ++ + LYI ++ SD
Sbjct: 25 GMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN------LYIANVEASDK 78
Query: 74 GTYKCNAKNTLGGSE 88
G Y C +
Sbjct: 79 GNYSCFVSSPSITKS 93
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 50.1 bits (119), Expect = 7e-09
Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 3 VIPSQLIGARLAAPLTLDCHVESYPKP-ITF-WTHENGSLIHEG--SRYHMWTEKFSSYK 58
+ PS I + L L+C + I F W + + H+ +R K
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 59 FYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
F L I +++SD G Y C A + L + V
Sbjct: 72 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 52.1 bits (124), Expect = 8e-09
Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 6/97 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT----FWTHENGSLIHEGSRYHMWTEKFSSY 57
+I I + P + C S + W + +G +I +
Sbjct: 231 KLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGI 290
Query: 58 KFYMRLYIGSLSKSDFG-TYKCNAKNTLGGSEGVIKV 93
LY ++++ G TY C N V
Sbjct: 291 T-EATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
Score = 46.4 bits (109), Expect = 8e-07
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ + +G + L C + W N LI +G++Y +
Sbjct: 131 CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ-------- 182
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L I + D G Y C + I V
Sbjct: 183 -NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214
Score = 30.2 bits (67), Expect = 0.28
Identities = 9/71 (12%), Positives = 20/71 (28%), Gaps = 3/71 (4%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P + C + ++ + E + + L+I + + +D
Sbjct: 46 PFSAKCPPIEDSLLSHRYNDKDNVVNWE--KIGKTRRPLNRRVKNGDLWIANYTSNDSHR 103
Query: 76 -YKCNAKNTLG 85
Y C G
Sbjct: 104 RYLCTVTTKNG 114
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 51.0 bits (122), Expect = 1e-08
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLI----HEGSRYHMWTEKFSSY 57
I + + C YP P W + + + R+ + ++ +
Sbjct: 95 ITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE 154
Query: 58 KFYMRLYIGSLS-KSDFGTYKCNAKNTLG 85
L I +L D G Y+CNA N++G
Sbjct: 155 -----LNIVNLQITEDPGEYECNATNSIG 178
Score = 47.2 bits (112), Expect = 2e-07
Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT--FWTHENGSLIHEGSRYHMWTEKFSSYKF 59
IV ++I P+TL C++ S + +WT NG + + E
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNME------- 57
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
I D G Y C + + + +
Sbjct: 58 ---YRINKPRAEDSGEYHCVY-HFVSAPKANATI 87
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 49.4 bits (118), Expect = 1e-08
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 2 IVIPSQL--IGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
IV PS + A + L C + P WT +G + E + E
Sbjct: 14 IVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTK-DGEEVVESPALLLQKEDTVR--- 68
Query: 60 YMRLYIGSLSKSDFGTYKCNAKN 82
RL + ++ D G Y C +
Sbjct: 69 --RLVLPAVQLEDSGEYLCEIDD 89
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 51.4 bits (123), Expect = 2e-08
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
C V + P+ W H++ + + +Y L I + D G Y
Sbjct: 501 NFYCRVIASSPPVVTW-HKDDRELKQSVKYMKRYNGNDYG-----LTINRVKGDDKGEYT 554
Query: 78 CNAKNTLGGSEGVIKV 93
AKN+ G E ++ +
Sbjct: 555 VRAKNSYGTKEEIVFL 570
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 51.3 bits (123), Expect = 2e-08
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS--RYHMWTEKFSSYKFYMR 62
+Q + + C + P P W L+ S R ++ +
Sbjct: 391 KAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGT-------- 442
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
L + D GTY C A N G ++
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 50.2 bits (120), Expect = 2e-08
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK-FYMRLYIGSLSKSDFG 74
P TL+C E P P W + + S F++R+ G S+ D G
Sbjct: 26 PATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85
Query: 75 TYKCNAKNTLG 85
Y C A+N LG
Sbjct: 86 VYVCVARNYLG 96
Score = 48.3 bits (115), Expect = 1e-07
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
+ + P ++C +P+P W +GS + +
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERITIRGG------ 165
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLG 85
+L I KSD G Y C N +G
Sbjct: 166 --KLMITYTRKSDAGKYVCVGTNMVG 189
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 48.7 bits (116), Expect = 3e-08
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYK-FY 60
+ PS LI P TL+C E P P W + + S F+
Sbjct: 13 VEHPSDLI-VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
+R+ G S+ D G Y C A+N LG
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLG 96
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 48.1 bits (115), Expect = 3e-08
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ + + PK W NG I ++Y + L+I + +D
Sbjct: 25 RVRFVVEL-ADPKLEVKWYK-NGQEIRPSTKYIFEHKGCQR-----ILFINNCQMTDDSE 77
Query: 76 YKCNAKNT 83
Y A +
Sbjct: 78 YYVTAGDE 85
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 50.6 bits (121), Expect = 3e-08
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 7/77 (9%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
LT+ C + + + N ++ +GS + + + L+ + D G Y
Sbjct: 264 LTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSV-SVRNGD------LFFKKVQVEDGGVY 316
Query: 77 KCNAKNTLGGSEGVIKV 93
C A +++
Sbjct: 317 TCYAMGETFNETLSVEL 333
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 48.1 bits (115), Expect = 3e-08
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
C +P W + ++ E + RL I +L K+D TY
Sbjct: 27 VFTCKT-EHPAATVTWRK-GLLELRASGKHQPSQEGLTL-----RLTISALEKADSDTYT 79
Query: 78 CNAKNT 83
C+
Sbjct: 80 CDIGQA 85
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 48.9 bits (116), Expect = 3e-08
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 18 TLDCHVESYPKPITFWTHENGSL------IHEGSRYHMWTEKFSSYKFYM-RLYIGSLSK 70
L C P P W E + +G+R + ++ + I +L +
Sbjct: 40 ELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVE 99
Query: 71 SDFGTYKCNAKNTLG 85
D GTY+C A N
Sbjct: 100 EDTGTYECRASNDPD 114
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 50.5 bits (120), Expect = 3e-08
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
L W + L+ + + + + L + ++ D G Y+
Sbjct: 144 DLSEFTRDKTDVKIQWYK-DSLLLDKDNEKFLSVRGTTH------LLVHDVALEDAGYYR 196
Query: 78 CNAKNTLGGSEG 89
C G +
Sbjct: 197 CVLTFAHEGQQY 208
Score = 48.5 bits (115), Expect = 2e-07
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 2 IVIPSQLIGARLAAPLTLDCHV---ESYPKPITFWTHENGSLIHEGSRYHMWTE------ 52
I+ P + I A L + LT+ C V P W N + I TE
Sbjct: 229 IISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288
Query: 53 -KFSSYKFYMRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKV 93
+ + + L +++ D +KC NTL V
Sbjct: 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 15/86 (17%)
Query: 16 PLTLDC-------HVESYPKPITFWTHENGSL-IHEGSRYHMWTEKFSSYKFYMRLYIGS 67
P+ L C P+ W + + + MW + + L++
Sbjct: 35 PVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-------LWLLP 87
Query: 68 LSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ D GTY C +N + I++
Sbjct: 88 ALQEDSGTYVCTTRNASYCDKMSIEL 113
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 47.8 bits (114), Expect = 4e-08
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C + P T W +G + E + + RL + D G
Sbjct: 27 RVVLTCELSRVDFPAT-WYK-DGQKVEESELLVVKMDGRKH-----RLILPEAKVQDSGE 79
Query: 76 YKCNAKN 82
++C +
Sbjct: 80 FECRTEG 86
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 47.8 bits (114), Expect = 4e-08
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
TL C V + W +G + S+ + + RL + +++ G
Sbjct: 28 SATLSCEVAQ-AQTEVTWYK-DGKKLSSSSKVRVEAVGCTR-----RLVVQQAGQAEAGE 80
Query: 76 YKCNAKNT 83
Y C A
Sbjct: 81 YSCEAGGQ 88
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 47.5 bits (113), Expect = 4e-08
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
V + R A +T C +S P WT + + +
Sbjct: 13 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI--------- 63
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
L I ++ SD GTY C N
Sbjct: 64 --LTIRNVQPSDAGTYVCTGSNMFA 86
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 49.3 bits (117), Expect = 5e-08
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 9/93 (9%)
Query: 2 IVIPSQLIGARLAAPLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ L C E W + S T
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV------ 177
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ + + S GTY C +N +G + ++++
Sbjct: 178 --ISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 40.1 bits (93), Expect = 1e-04
Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 22/114 (19%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT----FWTHENGSLIHEGSRYHMWTEKFSSY 57
I P Q I L C P+ W +++
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 58 KFYMR------------------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+Y + + +L SD GTY+C K G + +
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL 116
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 47.3 bits (113), Expect = 5e-08
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P + E + W GS I ++Y + TE L + + +D G+
Sbjct: 25 PAVFEAETERAGVKVR-WQR-GGSDISASNKYGLATEGTRH-----TLTVREVGPADQGS 77
Query: 76 YKCNAKNT 83
Y A ++
Sbjct: 78 YAVIAGSS 85
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 47.4 bits (113), Expect = 5e-08
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 16 PLTLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+ +C + WT G + SR+ + L + + SD G
Sbjct: 25 SCSFECVLSHESASDPAMWTV-GGKTVGSSSRFQATRQGRKY-----ILVVREAAPSDAG 78
Query: 75 TYKCNAKNTLG 85
+ +
Sbjct: 79 EVVFSVRGLTS 89
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 45.8 bits (109), Expect = 2e-07
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 15/87 (17%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I + + L L C P P W N + ++
Sbjct: 6 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHETK--------------K 50
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
+ + GTY C+ N +
Sbjct: 51 LYMVPYVDLEHQGTYWCHVYNDRDSQD 77
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 46.7 bits (110), Expect = 2e-07
Identities = 19/106 (17%), Positives = 25/106 (23%), Gaps = 33/106 (31%)
Query: 16 PLTLDCHVESYPKPITFWTHENGS----------------------------LIHEGSRY 47
L LD + P P W L R
Sbjct: 35 KLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRV 94
Query: 48 HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+ T K S + K D G Y KN +G + + V
Sbjct: 95 RVETTKDRS-----IFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 135
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 47.4 bits (112), Expect = 3e-07
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 19/78 (24%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
T C P P + + G ++++ GT
Sbjct: 202 QQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-------------------TVTRDLEGT 242
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C A++T G + V
Sbjct: 243 YLCRARSTQGEVTREVTV 260
Score = 27.3 bits (60), Expect = 2.5
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 18/71 (25%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+T+ C E++P+ T G R L + + + + +
Sbjct: 115 EVTVKC--EAHPRAK--VTLNGVPAQPLGPRAQ--------------LLLKATPEDNGRS 156
Query: 76 YKCNAKNTLGG 86
+ C+A + G
Sbjct: 157 FSCSATLEVAG 167
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 46.9 bits (111), Expect = 3e-07
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 3/93 (3%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ L+ + + L C E YPK WT + ++ + + +
Sbjct: 118 NKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVT 177
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L ++ + + C + ++
Sbjct: 178 STL---RINTTTNEIFYCTFRRLDPEENHTAEL 207
Score = 32.3 bits (73), Expect = 0.044
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 17/99 (17%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPIT-----FWTHENGSLIHEGSRYHMWTEKFS 55
+ +P L + +T++C + +W E+ ++I + S
Sbjct: 3 TVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHS 62
Query: 56 SYKFYMR------------LYIGSLSKSDFGTYKCNAKN 82
SY+ R L I + D G Y+C
Sbjct: 63 SYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY 101
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.4 bits (113), Expect = 4e-07
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
I+ + + L C P W NG+++ SR+ + S
Sbjct: 355 IMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRH----PRISVLNDGT 408
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L + SD G Y C N G S +
Sbjct: 409 -LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 44.3 bits (105), Expect = 7e-07
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
TL C + W + +G RY + + L I LS +D G Y
Sbjct: 27 TLQCELS--KVAPVEWKK-GPETLRDGGRYSLKQDGTRC-----ELQIHDLSVADAGEYS 78
Query: 78 CNAKN 82
C
Sbjct: 79 CMCGQ 83
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 43.9 bits (104), Expect = 9e-07
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C + WT NG + E R + + +L I + D G
Sbjct: 24 EICLKCEISENIPGK--WTK-NGLPVQESDRLKVVQKGRIH-----KLVIANALTEDEGD 75
Query: 76 YKCNAKN 82
Y
Sbjct: 76 YVFAPDA 82
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 46.0 bits (108), Expect = 1e-06
Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 19/92 (20%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
+ T C P P + + G
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESV-------------- 418
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
++++ GTY C A++T G + V
Sbjct: 419 -----TVTRDLEGTYLCRARSTQGEVTREVTV 445
Score = 31.8 bits (71), Expect = 0.074
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 18/73 (24%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+T+ C E++P+ G R L + + + + +
Sbjct: 300 EVTVKC--EAHPRAKVTLNGVPAQP--LGPRAQ--------------LLLKATPEDNGRS 341
Query: 76 YKCNAKNTLGGSE 88
+ C+A + G
Sbjct: 342 FSCSATLEVAGQL 354
Score = 28.7 bits (63), Expect = 0.80
Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 10/72 (13%)
Query: 16 PLTLDCHVE-SYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
LTL C VE P+ +T + E + +
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELK--------REPAVGEPAEVTTTVLVRRDHHG 154
Query: 74 GTYKCNAKNTLG 85
+ C + L
Sbjct: 155 ANFSCRTELDLR 166
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 45.6 bits (107), Expect = 1e-06
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 13/105 (12%)
Query: 1 MIVIPSQ--LIGARLAAPLTLDCHV----ESYPKPITFWTHENGSLIHEGSRYHMWTE-- 52
+I P+ + L + C V + +WT +G + + E
Sbjct: 226 VIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTI-DGKKPDDITIDVTINESI 284
Query: 53 ---KFSSYKFYMRLYIGSLSKSDFGT-YKCNAKNTLGGSEGVIKV 93
+ L I ++ D Y C+A++ G KV
Sbjct: 285 SHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Score = 43.7 bits (102), Expect = 6e-06
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 10/74 (13%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
+D + S KP W + + + L S+ G Y
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKI--QNFNNVIPEGM--------NLSFLIALISNNGNYT 193
Query: 78 CNAKNTLGGSEGVI 91
C G +
Sbjct: 194 CVVTYPENGRTFHL 207
Score = 34.1 bits (77), Expect = 0.014
Identities = 12/84 (14%), Positives = 20/84 (23%), Gaps = 13/84 (15%)
Query: 16 PLTLDCHVESYPKPITFWTHENGS------LIHEGSRYHMWTEKFSSYKFYMRLYIGSLS 69
L + W + + EK L+
Sbjct: 35 FLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV-------LWFRPTL 87
Query: 70 KSDFGTYKCNAKNTLGGSEGVIKV 93
+D G Y C +NT S+ +
Sbjct: 88 LNDTGNYTCMLRNTTYCSKVAFPL 111
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 44.9 bits (106), Expect = 1e-06
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYM----RLYIGSLSK 70
TL C ++ +P W +G ++ + +L I SL
Sbjct: 19 TGTLRCQLQVQGEPPEVHWLR-DGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQL 77
Query: 71 SDFGTYKCNAKNTLG 85
SD G Y+C
Sbjct: 78 SDTGQYQCLVFLGHQ 92
Score = 39.9 bits (93), Expect = 9e-05
Identities = 12/74 (16%), Positives = 24/74 (32%), Gaps = 14/74 (18%)
Query: 16 PLTLDCHVESYPKPIT-FWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
P L C + P+P+ W + + + L++ L+
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGHGP----------QRSLHVPGLN--KTS 169
Query: 75 TYKCNAKNTLGGSE 88
++ C A N G +
Sbjct: 170 SFSCEAHNAKGVTT 183
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 44.5 bits (105), Expect = 2e-06
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C P+ + N SLI + +I + + +D G
Sbjct: 24 SVTLKCQGAYSPEDNSTQWFHNESLISSQAS---------------SYFIDAATVNDSGE 68
Query: 76 YKCNAKNTLG 85
Y+C +
Sbjct: 69 YRCQTNLSTL 78
Score = 39.1 bits (91), Expect = 2e-04
Identities = 14/74 (18%), Positives = 19/74 (25%), Gaps = 19/74 (25%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLI---HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
P+ L CH +NG H S +H I + D
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH----------------IPKATLKD 148
Query: 73 FGTYKCNAKNTLGG 86
G+Y C
Sbjct: 149 SGSYFCRGLVGSKN 162
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 44.9 bits (105), Expect = 2e-06
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSL-------IHEGSRYHMWTEK 53
+ V ++++ +T+ C W + + +
Sbjct: 138 VHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGIT 197
Query: 54 FSSYKFYMR--------LYIGSLSKSDFGTYKCNAKNTLGGSEG-----VIKV 93
+ S + R L I + +D G C G + ++KV
Sbjct: 198 WFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
Score = 33.7 bits (76), Expect = 0.017
Identities = 11/113 (9%), Positives = 21/113 (18%), Gaps = 26/113 (23%)
Query: 2 IVIPSQLIGARLAAPLTLDCHV---ESYPKPITFWTHENGSLIHE--GSRYHMWTEKFSS 56
+ + + L C P+ W + W +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 57 YKFYMR---------------------LYIGSLSKSDFGTYKCNAKNTLGGSE 88
+ L + + D G Y C +E
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 117
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 43.4 bits (102), Expect = 3e-06
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 18 TLDCHVESYP---KPITFWTHENGSLIHEGSRYHM---WTEKFSSYKFYMRLYIGSLSKS 71
T V++ KP W + + H+ T + S + + I +
Sbjct: 26 TFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85
Query: 72 DFGTYKCNAKNTLG 85
G Y+C
Sbjct: 86 FAGNYRCEVTYKDK 99
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 44.7 bits (106), Expect = 3e-06
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM 61
IV P + L C + W NG+++ G+
Sbjct: 344 IVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT---- 398
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSD 102
L +++ D G Y C N++G + + G
Sbjct: 399 -LNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 42.7 bits (101), Expect = 3e-06
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L + + + W + GS+Y + L I S +D
Sbjct: 33 KIRLTVELADHDAEVK-WLKNGQEIQMSGSKYIFESIGAKR-----TLTISQCSLADDAA 86
Query: 76 YKCNAKN 82
Y+C
Sbjct: 87 YQCVVGG 93
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 42.8 bits (100), Expect = 4e-06
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKP-ITF-WTHENGSLI--HEGSRYHMWTEKFSSY 57
I + + A + ++ C S +TF W +N +L + H+ +
Sbjct: 13 ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELM 72
Query: 58 KFYMRLYIGSLSKSDFGTYKCNAKNTLG 85
++ L + ++ + G Y+C N G
Sbjct: 73 EYTTILRLRNVEFTSEGXYQCVISNHFG 100
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 43.7 bits (103), Expect = 4e-06
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C P+ + N SLI + +I + + D G
Sbjct: 24 SVTLKCQGAYSPEDQSTQWFHNESLISSQAS---------------SYFIDAATVDDSGE 68
Query: 76 YKCNAKNT 83
Y+C + +
Sbjct: 69 YRCQTQLS 76
Score = 41.8 bits (98), Expect = 2e-05
Identities = 12/71 (16%), Positives = 16/71 (22%), Gaps = 13/71 (18%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+ L CH +NG YI + D G+
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNS-------------DFYIPKATLKDSGS 151
Query: 76 YKCNAKNTLGG 86
Y C
Sbjct: 152 YFCRGLVGSKN 162
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 42.4 bits (100), Expect = 5e-06
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L C + P+ W + +G R+ + + L I L D G
Sbjct: 36 TAVLRCELSKMA-PVE-WWK-GHETLRDGDRHSLRQDGARC-----ELQIRGLVAEDAGE 87
Query: 76 YKCNAKN 82
Y C
Sbjct: 88 YLCMCGK 94
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 43.8 bits (103), Expect = 5e-06
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 15/68 (22%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C V P + NG+ + I S S +D G
Sbjct: 18 TVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYRITSASVNDSGE 62
Query: 76 YKCNAKNT 83
Y+C +
Sbjct: 63 YRCQRGLS 70
Score = 43.4 bits (102), Expect = 8e-06
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 13/78 (16%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
PL L CH + NG L I + S GT
Sbjct: 99 PLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNS-------------NLTILKTNISHNGT 145
Query: 76 YKCNAKNTLGGSEGVIKV 93
Y C+ + I V
Sbjct: 146 YHCSGMGKHRYTSAGISV 163
Score = 36.4 bits (84), Expect = 0.002
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 17/74 (22%)
Query: 16 PLTLDCHVESYPKP----ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKS 71
+TL C + + + F + + + I + +
Sbjct: 187 LVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS-------------EYQILTARRE 233
Query: 72 DFGTYKCNAKNTLG 85
D G Y C A G
Sbjct: 234 DSGLYWCEAATEDG 247
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 41.9 bits (98), Expect = 6e-06
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 18 TLDCHVESYP---KPITFWTHENGSLIHEGSRYHMW---TEKFSSYKFYMRLYIGSLSKS 71
T V P+ W + H+ + +S + L+I +
Sbjct: 23 TFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82
Query: 72 DFGTYKCNAKNTLG 85
G+Y+C
Sbjct: 83 FTGSYRCEVSTKDK 96
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 43.0 bits (101), Expect = 7e-06
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+TL C+ ++ + + NGSL E + L I + D G
Sbjct: 21 NVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------------SLNIVNAKFEDSGE 65
Query: 76 YKCNAKNT 83
YKC +
Sbjct: 66 YKCQHQQV 73
Score = 42.2 bits (99), Expect = 1e-05
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 13/73 (17%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
PL L CH +++G + H + I + + D GT
Sbjct: 102 PLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH-------------NISITNATVEDSGT 148
Query: 76 YKCNAKNTLGGSE 88
Y C K E
Sbjct: 149 YYCTGKVWQLDYE 161
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.5 bits (97), Expect = 1e-05
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 4/80 (5%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY---MRLYIGSLSKSDF 73
LTL C W +G I + K+ + + + +++ D
Sbjct: 19 LTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE 78
Query: 74 GTYKCNAKNTLGGSEGVIKV 93
G YKC + S +KV
Sbjct: 79 GVYKCLH-YSDSVSTKEVKV 97
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 42.3 bits (99), Expect = 1e-05
Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGS-----RYHMWTEKFSS 56
+ P ++ + + ++L+C + + + + R + E+
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 57 YKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYF 99
K +I S+ D G Y+C + V +
Sbjct: 65 GKAL--FHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASY 105
Score = 38.9 bits (90), Expect = 2e-04
Identities = 10/72 (13%), Positives = 16/72 (22%), Gaps = 8/72 (11%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+ L C YP W + + R + Y + L +
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTSHIR--------TPEGLYQVTSVLRLKPQPSRNF 172
Query: 77 KCNAKNTLGGSE 88
C N
Sbjct: 173 SCMFWNAHMKEL 184
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 42.5 bits (99), Expect = 1e-05
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR 62
P A++ ++L C P W + S ++ T
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT---------ST 55
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L + +S + +Y C A E I+V
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86
Score = 36.7 bits (84), Expect = 0.001
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 16 PLTLDCHVE-SYPKPITFWT-HENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
P+T+ C V YP + L+ K S + + + +
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRK-SLETKSLEVTFTPVIEDIG 166
Query: 74 GTYKCNAKNTLGGSEGVIKV 93
C AK + + V V
Sbjct: 167 KVLVCRAKLHIDEMDSVPTV 186
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 42.7 bits (99), Expect = 2e-05
Identities = 16/111 (14%), Positives = 27/111 (24%), Gaps = 3/111 (2%)
Query: 3 VIPSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR 62
V +G +A C S R + +
Sbjct: 235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS---FS 291
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQR 113
+ I L K D G Y C A + EG + ++ + +
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK 342
Score = 40.8 bits (94), Expect = 7e-05
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGS-LIHEGSRYHMWTEKFSSYKFYMRL 63
+ ++G L P C SY K W + L + + L
Sbjct: 452 VTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSL 511
Query: 64 YIGSLSKSDFGTYKCNAKNTLGGSE 88
+ ++++D G Y C K E
Sbjct: 512 TLNLVTRADEGWYWCGVKQGHFYGE 536
Score = 39.2 bits (90), Expect = 3e-04
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLI--------HEGSRYHMWT 51
I ++ + + + C I +W G+ EG +
Sbjct: 333 TIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE 392
Query: 52 EKFS----SYKFYMRLYIGSLSKSDFGTYKCNAKN 82
+ S + + L+ D G Y C
Sbjct: 393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNG 427
Score = 33.4 bits (75), Expect = 0.022
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKPITFW-------------THENGSLIHEGSRY 47
++ +++ L +T++C ++ + R
Sbjct: 114 GLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRI 173
Query: 48 HMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIK 92
+ + F + I L SD G Y C A + ++
Sbjct: 174 RLDIQGTGQLLFS--VVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216
Score = 31.5 bits (70), Expect = 0.11
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 13/84 (15%)
Query: 16 PLTLDCHVES---YPKPITFWTHENGSLI------HEGSRYHMWTEKFS----SYKFYMR 62
+++ C+ +W + EG + + +
Sbjct: 17 SVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFV 76
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGG 86
+ I LS+ D G YKC G
Sbjct: 77 VNIAQLSQDDSGRYKCGLGINSRG 100
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 41.3 bits (97), Expect = 2e-05
Identities = 10/73 (13%), Positives = 15/73 (20%), Gaps = 19/73 (26%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLI--HEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
+ L CH + + S H + I + S
Sbjct: 102 TIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFS----------------IPQANHSH 145
Query: 73 FGTYKCNAKNTLG 85
G Y C
Sbjct: 146 SGDYHCTGNIGYT 158
Score = 41.0 bits (96), Expect = 3e-05
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFG 74
+TL C P+ + W H NG+LI ++ Y + +D G
Sbjct: 21 SVTLTCQGARSPESDSIQWFH-NGNLIPTHTQ---------------PSYRFKANNNDSG 64
Query: 75 TYKCNAKNT 83
Y C T
Sbjct: 65 EYTCQTGQT 73
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 39.9 bits (93), Expect = 9e-05
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 6 SQLIGARLAAPLTLDCHVESYPKPIT--FWTHENGSLIHEGSRYHMWTEKFSSYKFYMR- 62
S + L + L+ I W +L+ E R K +++
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWER-GSTLVAEFKRKMKPFLKSGAFEILANG 61
Query: 63 -LYIGSLSKSDFGTYKCNAKNTLG 85
L I +L++ D GTY +T G
Sbjct: 62 DLKIKNLTRDDSGTYNVTVYSTNG 85
Score = 34.2 bits (78), Expect = 0.009
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 17/68 (25%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
TL C V ++ + + + + +K
Sbjct: 114 TLTCEVLEGTDVELKL-YQGKEHLRSLRQKT----------------MSYQWTNLRAPFK 156
Query: 78 CNAKNTLG 85
C A N +
Sbjct: 157 CKAVNRVS 164
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 40.0 bits (93), Expect = 9e-05
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 9/71 (12%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
TL C I + N + R + L I + + D G Y+
Sbjct: 129 TLTCLSNDIGANIQWLF--NSQSLQLTERMTLSQNNSI-------LRIDPIKREDAGEYQ 179
Query: 78 CNAKNTLGGSE 88
C N +
Sbjct: 180 CEISNPVSVRR 190
Score = 36.2 bits (83), Expect = 0.002
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 10/81 (12%)
Query: 18 TLDCHVESYPKPITFWTH-ENGSLIHEGSRYHMWTEKFSSYKFYMR---------LYIGS 67
L H W ++ E +R+ + + + Y L
Sbjct: 18 LLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQM 77
Query: 68 LSKSDFGTYKCNAKNTLGGSE 88
++ D G Y + +
Sbjct: 78 ITMKDMGVYTLDMTDENYRRT 98
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 38.5 bits (90), Expect = 1e-04
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEG--SRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
L+C V + W NG I G SRY + E L I +K+D
Sbjct: 26 ELECEVSEDDANVK-WFK-NGEEIIPGPKSRYRIRVEGKKH-----ILIIEGATKADAAE 78
Query: 76 YKCNAKN 82
Y
Sbjct: 79 YSVMTTG 85
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 3/66 (4%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYK 77
+ V S W NG + + K + L + + D G Y+
Sbjct: 27 EMAVEV-SEEGAQVMWMK-NGVELTREDSFKARYRFKKDGKRH-ILIFSDVVQEDRGRYQ 83
Query: 78 CNAKNT 83
Sbjct: 84 VITNGG 89
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 38.5 bits (90), Expect = 1e-04
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 17 LTLDCHVE--SYPKPITFW-----THENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLS 69
LT++C + SY T W N I +G RY E +S L I L+
Sbjct: 18 LTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRY---VETVNSGSKSFSLRINDLT 74
Query: 70 KSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT 107
D GTY+C G + + G T VT
Sbjct: 75 VEDGGTYRCGLGVAGGYCDYALCSSRYAECGDGTA-VT 111
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 39.5 bits (92), Expect = 1e-04
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 17/69 (24%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
TL C V + P +G + R + + S +
Sbjct: 118 TTLTCEVMNGTDPELNLYQ-DGKHLKLSQR----------------VITHKWTTSLSAKF 160
Query: 77 KCNAKNTLG 85
KC A N +
Sbjct: 161 KCTAGNKVS 169
Score = 37.2 bits (86), Expect = 7e-04
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 16 PLTLDCH--VESYPKPITFWTHE-NGSLIHEGSRYHMWTEKFSSYKFYM--RLYIGSLSK 70
+ LD S W + I + + ++ +YK + L I L
Sbjct: 16 DINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKT 75
Query: 71 SDFGTYKCNAKNTLGGSEGVIKV 93
D YK + +T G +
Sbjct: 76 DDQDIYKVSIYDTKGKNVLEKIF 98
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 39.0 bits (89), Expect = 3e-04
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
L C +S FW +NG L E +Y + K L I +LS+ D G Y
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--------NLLIFNLSEGDSGVY 601
Query: 77 KCNA 80
+C +
Sbjct: 602 QCLS 605
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 38.7 bits (89), Expect = 3e-04
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 21/113 (18%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF---WTHENGSLIHEGSRYHMWTEKFSSY- 57
+ + + R+ + C ++S + W +GS E + + S
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 58 ----KFYMR-------------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+F R + + ++ +SD G Y C+ S I +
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Score = 38.3 bits (88), Expect = 5e-04
Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 17/110 (15%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHV---ESYPKPITFWTHENGSLIHEGSRYHMWT-EKFSS 56
+ + S + + + + C V E W ++ +
Sbjct: 7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPT 66
Query: 57 YKFYMR-------------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
+F R L + + K+D G Y C + V
Sbjct: 67 GRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPV 116
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 37.2 bits (86), Expect = 3e-04
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 18 TLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR---LYIGSLSKSDFG 74
L C V+ W++ ++ + + + + + + +S SD G
Sbjct: 25 ILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEG 84
Query: 75 TYKC 78
Y C
Sbjct: 85 QYTC 88
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 37.5 bits (87), Expect = 7e-04
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 8/84 (9%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
S +I L + + C +N + G R W E +
Sbjct: 16 SSPVI--PLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF------V 67
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
I + + G Y+C +
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFR 91
Score = 29.5 bits (66), Expect = 0.37
Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 10/63 (15%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
++L C P E + S + +G + + G
Sbjct: 122 NISLTCSSAHIPFDRFSLAKEGEL----------SLPQHQSGEHPANFSLGPVDLNVSGI 171
Query: 76 YKC 78
Y+C
Sbjct: 172 YRC 174
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 36.0 bits (82), Expect = 0.001
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 15 APLTLDCHV-ESYPKPITFWTHENG-SLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSD 72
P L+C V +P W NG + + R W E+ + F L+ + +D
Sbjct: 27 DPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFI--LHFEPVLPND 84
Query: 73 FGTYKCNAKNTLG 85
G+Y+C+A
Sbjct: 85 NGSYRCSANFQSN 97
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 36.8 bits (85), Expect = 0.001
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P ++ +T+ C + + H GSL K ++ Y
Sbjct: 14 PHFMV--PKEKQVTICCQ--GNYGAVEYQLHFEGSLFAVD------RPKPPERINKVKFY 63
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
I ++ G Y C + SE
Sbjct: 64 IPDMNSRMAGQYSCIYRVGELWSE 87
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 36.3 bits (84), Expect = 0.001
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P ++ +T+ C + + H GSL K ++ Y
Sbjct: 11 PHFMV--PKEKQVTICCQ--GNYGAVEYQLHFEGSLFAVD------RPKPPERINKVKFY 60
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
I ++ G Y C + SE
Sbjct: 61 IPDMNSRMAGQYSCIYRVGELWSE 84
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 35.9 bits (83), Expect = 0.002
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 15/80 (18%)
Query: 22 HVESYPKPITFWTHENGSLIHEGS-------------RYHMWTEKFSSYKFYMRLYIGSL 68
PKP + SL+ Y + S Y+ L+I ++
Sbjct: 2 QSGPLPKP-SLQAL-PSSLVPLEKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAVLFIPAM 59
Query: 69 SKSDFGTYKCNAKNTLGGSE 88
+S G Y+C+ +N S
Sbjct: 60 KRSLAGRYRCSYQNGSLWSL 79
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 36.4 bits (83), Expect = 0.002
Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 2 IVIPSQLIGARLAAPLTLDCH-VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
+ ++ + +TL C VE W + SR+
Sbjct: 9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR-------- 60
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGS 87
RL + S+ D G Y C G+
Sbjct: 61 -RLLLRSVQLHDSGNYSCYRAGRPAGT 86
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 36.3 bits (83), Expect = 0.003
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 5/86 (5%)
Query: 1 MIVIPSQLIGARLAAPLTLDCHVESYPKP-ITFWTHENGSLIHEGSRYHMWTEKFSSYKF 59
+ Q + T C W + + S +F
Sbjct: 166 PHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS----SRRF 221
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLG 85
+ + +K D G Y+C + G
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTEGG 247
Score = 28.6 bits (63), Expect = 1.1
Identities = 13/100 (13%), Positives = 26/100 (26%), Gaps = 15/100 (15%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
L + V + P W G W L I + + +
Sbjct: 94 LNVYVKVNNGPLGNPIWN-------ISGDPTRTWNR--------AELAISTFWPNFYQVI 138
Query: 77 KCNAKNTLGGSEGVIKVYNIGYFGSDTQYVTDEEMQRTNQ 116
+ G + +V +G+ + T + + N
Sbjct: 139 FEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNA 178
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 35.3 bits (81), Expect = 0.003
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 6 SQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYM---- 61
SQ I + +T K + W + E + Y+
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVPLKEVL-WKK-QKDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 62 -RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
L I +L+ SD Y+ + N + + V
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL 93
Score = 31.0 bits (70), Expect = 0.086
Identities = 8/69 (11%), Positives = 16/69 (23%), Gaps = 17/69 (24%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
TL C V ++ + + + + +
Sbjct: 108 ATLTCEVLEGTDVELKL-YQGKEHLRSLRQ----------------KTMSYQWTNLRAPF 150
Query: 77 KCNAKNTLG 85
KC A N +
Sbjct: 151 KCKAVNRVS 159
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 35.6 bits (81), Expect = 0.003
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 10/71 (14%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK-SDFG 74
+ L C YP W H N I L + S+ G
Sbjct: 130 TVILTCPQ--YPGSEILWQH-NDKNIGGDEDDKNIGSDEDH------LSLKEFSELEQSG 180
Query: 75 TYKCNAKNTLG 85
Y C + +
Sbjct: 181 YYVCYPRGSKP 191
Score = 35.3 bits (80), Expect = 0.004
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+ L C E+ K IT W +G +I + + +GS +K G Y
Sbjct: 21 VLLTCDAEA--KNIT-WFK-DGKMIGFLTEDKK------------KWNLGSNAKDPRGMY 64
Query: 77 KCNAKNTLGGSEGV 90
+C V
Sbjct: 65 QCKGSQNKSKPLQV 78
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 34.9 bits (80), Expect = 0.004
Identities = 16/109 (14%), Positives = 34/109 (31%), Gaps = 17/109 (15%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVE---------------SYPKPITFWTHENGSLIHEGSR 46
++ P I A + L C + + + + + + +
Sbjct: 9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 47 YHMWTEKFSSYKFYMR--LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
Y TE + L I ++ SD G Y C ++ E +++
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 117
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.1 bits (78), Expect = 0.006
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPIT--FWTHENGSLI--------HEGSRYHMWT 51
+ + I A + L CH+ S +T W ++ L H +
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 52 EKFSSYKFYMRLYIGSLSKSDFGTYKCN-AKNTLGGSEGVIKV 93
+ L + SL+ +D G Y C G G I +
Sbjct: 66 APGPG----LGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFL 104
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 33.6 bits (76), Expect = 0.012
Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 11 ARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR---LYIGS 67
+ L C V+ + W++ ++ G + + + + I +
Sbjct: 50 VVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISN 109
Query: 68 LSKSDFGTYKC 78
++ +D G Y C
Sbjct: 110 VALADEGEYTC 120
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 33.7 bits (77), Expect = 0.013
Identities = 12/84 (14%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P +I +T+ C + + + S + + + + +
Sbjct: 12 PGSVI--SWGNSVTIWCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARF------S 61
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
I S+++ G Y+C ++ +G S+
Sbjct: 62 IPSMTEDYAGRYRCYYRSPVGWSQ 85
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 34.2 bits (77), Expect = 0.013
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 7 QLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIG 66
Q + + L C +ES W H+ + L+I
Sbjct: 508 QKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNC---------ILFIE 557
Query: 67 SLSKSDFGTYKCNAK 81
+L+ +G Y C A+
Sbjct: 558 NLTAQQYGHYFCEAQ 572
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 32.7 bits (75), Expect = 0.017
Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 17 LTLDCHVE--SYPKPITFW-----THENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLS 69
LT++C V +W N I +G RY E + L I L+
Sbjct: 18 LTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRY---VETVNRGSKSFSLRINDLT 74
Query: 70 KSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQYVT 107
D GTY+C + GS + +G T VT
Sbjct: 75 VKDSGTYRC-KPESRYGSYDAVCAALNDQYGGGTV-VT 110
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 33.3 bits (76), Expect = 0.018
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P +I +T+ C + + + GS ++ + + + +
Sbjct: 12 PGSVI--SRGNSVTIRCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARF------S 61
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
I S+++ G Y+C + G SE
Sbjct: 62 IPSMTEHHAGRYRCYYYSPAGWSE 85
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 33.1 bits (75), Expect = 0.020
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 17/126 (13%)
Query: 2 IVIPSQLIGARLAAPLTLDCHV---------------ESYPKPITFWTHENGSLIHEGSR 46
++ PS I A + L CH+ S + + + + +
Sbjct: 7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAP 66
Query: 47 YHMWTEKFSSYKFYMR--LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQ 104
Y T + L I +++ SD G Y C ++ + ++++
Sbjct: 67 YRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHV 126
Query: 105 YVTDEE 110
V +
Sbjct: 127 DVKGYK 132
Score = 32.8 bits (74), Expect = 0.026
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 5/86 (5%)
Query: 4 IPSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR 62
+ + L+C YP+P W++ G I + Y
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV-GLYAVAAS 181
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSE 88
+ + S C +++L G E
Sbjct: 182 V---IMRGSSGEGVSCTIRSSLLGLE 204
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 31.8 bits (72), Expect = 0.082
Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ L C S F+ H+ G + S F IG + + GT
Sbjct: 135 RVILQCW--SDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS----IGPMMLALAGT 188
Query: 76 YKCNAKNTLGGSE 88
Y+C T +
Sbjct: 189 YRCYGSVTHTPYQ 201
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 31.1 bits (70), Expect = 0.10
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 15/69 (21%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
L L C VE ++F G+ + S Y
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPNLT---------------VSWDPRISSEQDY 171
Query: 77 KCNAKNTLG 85
C A+N +
Sbjct: 172 TCIAENAVS 180
Score = 26.5 bits (58), Expect = 3.4
Identities = 10/93 (10%), Positives = 22/93 (23%), Gaps = 10/93 (10%)
Query: 16 PLTLDCHVESYPKPITF-WTHENGSL---IHEGSRYHMWTEKFSSYKFYMRLY------I 65
+TL + K W SL + ++ + +
Sbjct: 15 SVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQL 74
Query: 66 GSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGY 98
+L D G+Y+ + +
Sbjct: 75 SNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQ 107
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 30.6 bits (68), Expect = 0.11
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 15 APLTLDCHVE-SYPKPITFWTHENGS---LIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
++C V+ +P W NG+ + G + + E+ S ++ L+ +
Sbjct: 30 ELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFV-LHFKPIHL 88
Query: 71 SDFGTYKCNAKNTLGGSEG 89
SD G+Y C+
Sbjct: 89 SDNGSYSCSTNFNSQVINS 107
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 30.6 bits (69), Expect = 0.12
Identities = 8/69 (11%), Positives = 14/69 (20%), Gaps = 17/69 (24%)
Query: 17 LTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
TL C V + + + + +
Sbjct: 118 ATLTCEVLEGTDVELKLYQ-GKEHLRSLR----------------QKTMSYQWTNLRAPF 160
Query: 77 KCNAKNTLG 85
KC A N +
Sbjct: 161 KCKAVNRVS 169
Score = 27.9 bits (62), Expect = 1.2
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 18 TLDCHVESYPKPITF-WTHENGSLI---HEGSRYHMWTEKFS-SYKFYMR---LYIGSLS 69
TL W H I + ++ F L I ++S
Sbjct: 18 TLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVS 77
Query: 70 KSDFGTYKCNAKNTLGGSEGV-IKVY 94
K D G Y + + ++VY
Sbjct: 78 KEDRGDYYMRMLHETEDQWKITMEVY 103
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 29.8 bits (67), Expect = 0.24
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 16 PLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
P+TL C + + L E T + I S++ G
Sbjct: 21 PVTLRCQ--GGQETQEYR------LYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGR 72
Query: 76 YKCNAKNTLGG 86
Y+C + G
Sbjct: 73 YRCYYGSDTAG 83
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 29.5 bits (66), Expect = 0.25
Identities = 19/115 (16%), Positives = 29/115 (25%), Gaps = 24/115 (20%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVESYPKPITF----WTHENGSLIHEGSRYHMWTEKFSSY 57
I P ++I L C P+ W + + Y
Sbjct: 8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKV-DQVIILYSGDKIY 66
Query: 58 KFYMRLY-------------------IGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
Y + +L SD GTY+C K G + I +
Sbjct: 67 DDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL 121
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 29.8 bits (66), Expect = 0.31
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L+ S + D + C AK + ++V
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 29.4 bits (65), Expect = 0.42
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSE 88
L + + + G+YK ++T +
Sbjct: 54 LTVADATSENAGSYKVTVQDTDTMTS 79
Score = 28.6 bits (63), Expect = 0.74
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSE 88
+ I + G Y S
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSA 172
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.4 bits (63), Expect = 0.33
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVY 94
RL +G G Y+CN + E ++V+
Sbjct: 36 RLDLGKRILDPRGIYRCNGTDIYKDKESTVQVH 68
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 28.5 bits (64), Expect = 0.40
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 5 PSQLIGARLAAPLTLDCHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLY 64
P +I L + +T C TF + + + S + R
Sbjct: 16 PGTVI--PLGSHVTFVCR--GPVGVQTFRLERESRSTYNDTE---DVSQASPSESEARFR 68
Query: 65 IGSLSKSDFGTYKCNAKNTLGGSE 88
I S+S+ + G Y+C SE
Sbjct: 69 IDSVSEGNAGPYRCIYYKPPKWSE 92
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 28.8 bits (64), Expect = 0.56
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 17 LTLDCHVE-SYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGT 75
+ C +P+P W ENG ++ + + Y +L + + +
Sbjct: 124 RRIICSTSGGFPEPHLSWL-ENGEELNAINTTVSQDPETELYAVSSKL---DFNMTTNHS 179
Query: 76 YKCNAKNTLGGSE 88
+ C K
Sbjct: 180 FMCLIKYGHLRVN 192
Score = 26.1 bits (57), Expect = 5.2
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 9 IGARLAAPLTLDCH----VESYPKPITFWTHENGSLI-------HEGSRYHMWTEKFSSY 57
+ + TL C VE + +W E ++ + Y T +
Sbjct: 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN 63
Query: 58 KFYMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNI 96
+ + +L SD GTY+C + + +
Sbjct: 64 NLSIVIL--ALRPSDEGTYECVVLKYEKDAFKREHLAEV 100
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 28.2 bits (62), Expect = 0.64
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 18 TLDCHVESYP---KPITFWTHENGS--LIHEGSRYHMWTEKFSSYKFY-MRLYIGSLSKS 71
+ V KP W G+R+ S+ Y + L+IG +
Sbjct: 31 VVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90
Query: 72 DFGTYKCNAKNTLGGSE 88
D G Y+ K
Sbjct: 91 DRGYYRLEVKAKDTCDS 107
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 28.7 bits (63), Expect = 0.69
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 14/86 (16%)
Query: 16 PLTLDCHVESYPKP--ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDF 73
T+ C ++ ++ Y + S++ D
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN--------DSFSAKASVSVTAEDE 256
Query: 74 GTYKCNAKNTLGGSEG----VIKVYN 95
GT + LG + +Y+
Sbjct: 257 GTQRLTCAVILGNQSQETLQTVTIYS 282
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly
roll, sugar binding protein; 1.81A {Robinia
pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A*
Length = 237
Score = 28.6 bits (63), Expect = 0.84
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 26 YPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTYKCNAKNTLG 85
Y P W G++ +S+ F ++ + + +
Sbjct: 52 YAAPFQIWDSTTGNV----------ASFVTSFTFIIQAPNPATTADGLAFFLAPVDTQPL 101
Query: 86 GSEGVIKVYNIGYFGSDTQYVTDE 109
G++ ++ GYF Q V E
Sbjct: 102 DLGGMLGIFKDGYFNKSNQIVAVE 125
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 27.7 bits (62), Expect = 1.0
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 18/102 (17%)
Query: 15 APLTLDCHVE-SYPKPITFW--THENGSLIH---------EGSRYHMWTEKFSSYKFYMR 62
+T+DC E FW +G ++ E + ++ F K +
Sbjct: 16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIG 75
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQ 104
L I + D Y C + GGS + FG+ T
Sbjct: 76 LIITATQIEDSAVYFCAMRGDYGGSGNKL------IFGTGTL 111
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 27.3 bits (61), Expect = 1.0
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 5 PSQLIGARLAAPLTLDCHVES-YPKPITFWTHENGSLIHEGSRYHMWTE-KFSSYKFYMR 62
S +I +T+ C + ++GS E S TE +F
Sbjct: 16 SSLMI--SQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFE------- 66
Query: 63 LYIGSLSKSDFGTYKCNAKNTLGGSE 88
IG ++++ G Y C + SE
Sbjct: 67 --IGPVNETITGHYSCIYSKGITWSE 90
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.7 bits (61), Expect = 1.8
Identities = 11/100 (11%), Positives = 33/100 (33%), Gaps = 17/100 (17%)
Query: 11 ARLAAPLTLDCHVESYPKP-----ITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMR--- 62
L +T+ C++ W ++ + E + + + +++
Sbjct: 15 TPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSP 74
Query: 63 ---------LYIGSLSKSDFGTYKCNAKNTLGGSEGVIKV 93
L + + + G Y+C T ++G +++
Sbjct: 75 WRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQL 114
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding
protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1
PDB: 1q88_A 1q89_A
Length = 221
Score = 27.2 bits (59), Expect = 1.9
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 67 SLSKSDFGTYKCNAKN--TLGGSEGVIKVYNIGYFGSDTQYVTDEE 110
+ S G + N N L G+ K++N + QY+ DE
Sbjct: 141 NQRDSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDEN 186
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 26.8 bits (59), Expect = 2.0
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 15/92 (16%)
Query: 2 IVIPSQLIGARLAAPLTLDCHVE---SYPKPITFWTHENGS-----LIHEGSRYHMWTEK 53
+ + + + + C + Y + + W +GS + + + H+ K
Sbjct: 4 TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK 63
Query: 54 FSSYKFYMR-------LYIGSLSKSDFGTYKC 78
+ L I +L D Y C
Sbjct: 64 YRGRLKVSHKVPGDVSLQINTLQMDDRNHYTC 95
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 26.9 bits (59), Expect = 2.1
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 63 LYIGSLSKSDFGTYKCNAKNT--LGGSEGVIKV 93
+ I +L SD GT+ C+ KN + G + +
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 27.1 bits (59), Expect = 2.2
Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 15/102 (14%)
Query: 3 VIPSQLIGARLAAPLTLDCHVESYPKPIT---FWTHENGSLI----------HEGSRYHM 49
+ L+ + LDC F T +G+ H
Sbjct: 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHD 63
Query: 50 WTEKFSSYKFYM--RLYIGSLSKSDFGTYKCNAKNTLGGSEG 89
+ Y+ RL + D Y C + G+
Sbjct: 64 TRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAE 105
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 26.1 bits (58), Expect = 2.8
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 15 APLTLDCHVE-SYPKPITFW--THENGS---LIHEGS---------RYHMWTEKFSSYKF 59
+T+DC E FW +G LI + S Y + F K
Sbjct: 16 TTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSL---NFQKPKS 72
Query: 60 YMRLYIGSLSKSDFGTYKCNAKNTLGGSEGVIKVYNIGYFGSDTQ 104
+ L I + D Y C + GGS + FG+ T
Sbjct: 73 SIGLIITATQIEDSAVYFCAMRGDYGGSGNKL------IFGTGTL 111
>4evx_A Putative phage endolysin; structural genomics, PSI-biology,
program for the characteri secreted effector proteins,
pcsep; HET: MLY MSE; 1.70A {Salmonella enterica subsp}
Length = 106
Score = 26.1 bits (57), Expect = 3.0
Identities = 6/43 (13%), Positives = 10/43 (23%)
Query: 21 CHVESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRL 63
+E Y W G ++ T + L
Sbjct: 21 LSLEXYRDRQGNWVIGYGHMLTPDETLTFITPDQAEAFLLDDL 63
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 25.8 bits (57), Expect = 3.7
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 17/88 (19%)
Query: 5 PSQLIGARLAAPLTLDCH----VESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFY 60
S +I +T+ C + Y ++GS E S TE
Sbjct: 16 SSLMI--SQGTFVTVVCSYSDKHDLY---NMVRLEKDGSTFMEKSTEPYKTED------- 63
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLGGSE 88
IG ++++ G Y C + SE
Sbjct: 64 -EFEIGPVNETITGHYSCIYSKGITWSE 90
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme
complex, hydrolase; 1.50A {Chryseobacterium
proteolyticum} PDB: 3a55_A 3a56_A*
Length = 305
Score = 26.4 bits (57), Expect = 4.1
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 100 GSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPVY 157
G + + D + + + + W + N S S Y T+G + PS +Y
Sbjct: 209 GVTEKRIIDPSLFSSGPVTDTAWRNACVNTSCGSASVSSYANTAGNVYYRSPSNSYLY 266
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A
{Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Length = 185
Score = 26.0 bits (56), Expect = 4.6
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 100 GSDTQYVTDEEMQRTNQIARSKWGSERTNQIARSKWGSGYRYTSGPIRLPDPSGDPVY 157
G + + D + + + + W + N S S Y T+G + PS +Y
Sbjct: 95 GVTEKRIIDPSLFSSGPVTDTAWRNACVNTSCGSASVSSYANTAGNVYYRSPSNSYLY 152
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 26.0 bits (56), Expect = 4.6
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 61 MRLYIGSLSKSDFGTYKCNAKNTLG 85
+G+ +K GTY+C
Sbjct: 153 NTWNLGNNAKDPRGTYQCQGAKETS 177
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 4.9
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 108 DEEMQRTNQIARSK-------WGSERTNQIARSK 134
D + Q R K W ++ Q+ ++K
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel,
structural genomics, PSI-2, protein structure
initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Length = 109
Score = 25.3 bits (55), Expect = 5.9
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 29 PITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSK 70
T W + L+ +G Y + + Y ++ + S
Sbjct: 49 KFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSS 90
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 25.7 bits (57), Expect = 6.1
Identities = 5/51 (9%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 74 GTYKCNAKNTLGGSEGVIKVYNIGYFGS--DTQYVTDEEMQRTNQIARSKW 122
GT + + I + + +++E+ ++ ++A
Sbjct: 222 GTLRTVRDERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELAGDPN 272
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 25.8 bits (56), Expect = 7.1
Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 15 APLTLDCHVESYPKPITFW--THENGSLIH-----------EGSRYHMWTEKFSSYKFYM 61
P+ L+C +S P FW H N + E +H K SS
Sbjct: 17 LPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSS---F 73
Query: 62 RLYIGSLSKSDFGTYKCNAKNTLGGSEGVI 91
L S SD Y C ++
Sbjct: 74 HLQKSSAQLSDSALYYCALFLASSSFSKLV 103
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 25.7 bits (56), Expect = 8.2
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 1/82 (1%)
Query: 18 TLDCHV-ESYPKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSLSKSDFGTY 76
+ C P+ IT +NG+ + + + SY + + +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQV 195
Query: 77 KCNAKNTLGGSEGVIKVYNIGY 98
C + + + N+
Sbjct: 196 ICEVAHVTLQGDPLRGTANLSE 217
>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling
protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A
2l1c_A* 1shc_A*
Length = 207
Score = 25.2 bits (54), Expect = 9.4
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 13/42 (30%)
Query: 27 PKPITFWTHENGSLIHEGSRYHMWTEKFSSYKFYMRLYIGSL 68
KP W H N ++ G Y + Y+G +
Sbjct: 32 NKPTRGWLHPNDKVMGPGVSYLVR-------------YMGCV 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.422
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,446,702
Number of extensions: 128413
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 709
Number of HSP's successfully gapped: 372
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)