Query psy16262
Match_columns 222
No_of_seqs 109 out of 1074
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 16:56:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bch_A 40S ribosomal protein S 100.0 7.5E-71 2.6E-75 480.3 19.1 201 1-201 34-234 (253)
2 3u5c_A 40S ribosomal protein S 100.0 2.4E-70 8.4E-75 476.8 19.5 200 1-201 1-201 (252)
3 2zkq_b 40S ribosomal protein S 100.0 4.4E-70 1.5E-74 484.4 17.6 200 1-200 1-200 (295)
4 3iz6_A 40S ribosomal protein S 100.0 7.5E-70 2.6E-74 481.8 16.5 201 1-201 5-205 (305)
5 2xzm_B RPS0E; ribosome, transl 100.0 9.8E-69 3.4E-73 465.2 18.3 195 7-201 2-197 (241)
6 3j20_B 30S ribosomal protein S 100.0 3.9E-67 1.3E-71 445.0 19.4 186 13-199 7-192 (202)
7 1vi6_A 30S ribosomal protein S 100.0 6.1E-65 2.1E-69 433.0 17.2 177 13-190 11-187 (208)
8 3bbn_B Ribosomal protein S2; s 100.0 1.4E-61 5E-66 418.5 16.4 175 13-188 4-227 (231)
9 2vqe_B 30S ribosomal protein S 100.0 3.3E-62 1.1E-66 427.8 10.1 184 13-199 5-237 (256)
10 3r8n_B 30S ribosomal protein S 100.0 2.6E-61 9E-66 413.8 3.5 168 18-186 1-217 (218)
11 2yva_A DNAA initiator-associat 96.0 0.095 3.3E-06 41.9 11.5 135 50-185 15-189 (196)
12 3trj_A Phosphoheptose isomeras 95.2 0.73 2.5E-05 37.5 14.4 109 57-169 31-174 (201)
13 2i2w_A Phosphoheptose isomeras 95.0 0.61 2.1E-05 37.9 13.3 103 58-164 50-183 (212)
14 3sho_A Transcriptional regulat 94.8 0.29 9.9E-06 38.6 10.5 113 69-186 37-167 (187)
15 1x92_A APC5045, phosphoheptose 94.5 1.1 3.6E-05 35.8 13.4 124 59-183 32-191 (199)
16 1nri_A Hypothetical protein HI 94.3 0.29 1E-05 42.7 10.3 141 50-190 49-229 (306)
17 3etn_A Putative phosphosugar i 94.3 0.72 2.5E-05 38.0 12.2 127 58-188 44-196 (220)
18 2xbl_A Phosphoheptose isomeras 94.2 1.7 5.7E-05 34.4 14.8 108 57-165 33-171 (198)
19 3fxa_A SIS domain protein; str 94.1 0.3 1E-05 39.2 9.3 113 72-188 46-180 (201)
20 1m3s_A Hypothetical protein YC 93.9 0.63 2.1E-05 36.7 10.6 112 70-189 36-174 (186)
21 1tk9_A Phosphoheptose isomeras 93.6 1.7 5.8E-05 34.0 12.7 110 56-166 26-164 (188)
22 2xhz_A KDSD, YRBH, arabinose 5 93.2 0.55 1.9E-05 36.8 9.1 111 72-186 50-182 (183)
23 1jeo_A MJ1247, hypothetical pr 93.1 0.6 2.1E-05 36.6 9.2 113 68-188 37-167 (180)
24 1vim_A Hypothetical protein AF 92.9 0.62 2.1E-05 37.6 9.3 113 68-188 44-183 (200)
25 2a3n_A Putative glucosamine-fr 89.8 2.3 7.7E-05 37.5 10.3 114 71-187 54-178 (355)
26 2aml_A SIS domain protein; 469 89.3 3.4 0.00012 36.7 11.1 75 116-190 95-185 (373)
27 3knz_A Putative sugar binding 87.6 10 0.00035 33.7 13.1 120 68-190 47-184 (366)
28 3g68_A Putative phosphosugar i 82.5 7 0.00024 34.4 9.4 119 69-190 32-169 (352)
29 3cvj_A Putative phosphoheptose 81.7 8.8 0.0003 31.5 9.3 94 56-150 26-144 (243)
30 3jx9_A Putative phosphoheptose 80.2 7.2 0.00025 31.3 7.9 85 57-149 23-112 (170)
31 3gv0_A Transcriptional regulat 78.1 5.6 0.00019 32.7 6.9 58 117-178 65-122 (288)
32 3eua_A Putative fructose-amino 75.9 12 0.0004 32.6 8.6 47 117-163 73-125 (329)
33 2xci_A KDO-transferase, 3-deox 75.8 14 0.00046 32.3 9.1 90 56-146 210-307 (374)
34 3g1w_A Sugar ABC transporter; 74.0 31 0.0011 28.1 10.5 61 116-180 59-122 (305)
35 3qk7_A Transcriptional regulat 72.7 8.7 0.0003 31.7 6.7 59 117-179 64-122 (294)
36 3egc_A Putative ribose operon 69.7 8.3 0.00028 31.5 5.9 60 116-179 62-121 (291)
37 3huu_A Transcription regulator 69.6 11 0.00038 31.1 6.7 59 116-178 81-139 (305)
38 3bbl_A Regulatory protein of L 69.4 12 0.0004 30.6 6.8 61 116-180 62-122 (287)
39 3k4h_A Putative transcriptiona 68.2 13 0.00043 30.3 6.7 61 116-180 67-128 (292)
40 2fep_A Catabolite control prot 68.1 13 0.00045 30.4 6.9 59 117-179 71-129 (289)
41 3jy6_A Transcriptional regulat 68.0 11 0.00038 30.6 6.3 58 116-178 61-118 (276)
42 3rot_A ABC sugar transporter, 67.2 14 0.00048 30.3 6.9 60 116-179 59-124 (297)
43 3d8u_A PURR transcriptional re 66.3 11 0.00037 30.4 5.8 59 116-178 57-115 (275)
44 2rgy_A Transcriptional regulat 66.0 14 0.00047 30.3 6.5 59 117-179 66-124 (290)
45 3h5t_A Transcriptional regulat 65.8 10 0.00035 32.3 5.9 61 116-180 126-186 (366)
46 3hcw_A Maltose operon transcri 65.6 13 0.00046 30.5 6.4 60 117-180 67-128 (295)
47 1moq_A Glucosamine 6-phosphate 65.1 15 0.0005 32.3 6.9 72 116-187 97-184 (368)
48 3k9c_A Transcriptional regulat 64.9 12 0.00041 30.7 6.0 60 116-180 64-123 (289)
49 3brq_A HTH-type transcriptiona 63.8 18 0.00063 29.2 6.9 59 116-178 75-134 (296)
50 3o74_A Fructose transport syst 63.7 14 0.00047 29.6 6.0 59 116-178 56-115 (272)
51 3fj1_A Putative phosphosugar i 63.0 30 0.001 30.1 8.5 92 69-162 41-141 (344)
52 2zj3_A Glucosamine--fructose-6 62.8 6.2 0.00021 35.0 4.0 115 70-187 59-191 (375)
53 3l6u_A ABC-type sugar transpor 62.8 20 0.00068 29.1 6.9 61 116-180 62-125 (293)
54 3cs3_A Sugar-binding transcrip 62.2 13 0.00043 30.2 5.6 58 118-179 57-114 (277)
55 1j5x_A Glucosamine-6-phosphate 60.7 13 0.00046 32.3 5.8 96 68-165 49-155 (342)
56 3kke_A LACI family transcripti 60.0 20 0.00067 29.6 6.4 58 116-179 69-127 (303)
57 3kjx_A Transcriptional regulat 59.6 26 0.00089 29.5 7.3 60 116-179 122-181 (344)
58 2poc_A D-fructose-6- PH, isome 58.8 24 0.00081 31.0 7.1 117 69-188 48-182 (367)
59 3gbv_A Putative LACI-family tr 57.8 21 0.00072 29.0 6.2 60 116-179 67-129 (304)
60 3hba_A Putative phosphosugar i 57.0 37 0.0013 29.5 8.0 93 69-163 40-141 (334)
61 3clk_A Transcription regulator 56.3 18 0.0006 29.6 5.5 58 116-178 63-120 (290)
62 2h3h_A Sugar ABC transporter, 55.9 32 0.0011 28.4 7.1 60 117-180 56-118 (313)
63 3fkj_A Putative phosphosugar i 55.0 20 0.00069 31.4 5.9 104 57-162 26-139 (347)
64 2bfw_A GLGA glycogen synthase; 55.0 65 0.0022 24.2 8.5 72 72-147 71-145 (200)
65 3c3k_A Alanine racemase; struc 54.7 22 0.00076 28.9 5.9 58 116-178 62-119 (285)
66 3oy2_A Glycosyltransferase B73 54.7 76 0.0026 26.9 9.5 95 52-146 196-302 (413)
67 3tbf_A Glucosamine--fructose-6 54.4 13 0.00045 32.9 4.6 74 117-190 100-189 (372)
68 3m9w_A D-xylose-binding peripl 53.9 31 0.001 28.4 6.6 60 116-179 56-118 (313)
69 3e3m_A Transcriptional regulat 53.6 33 0.0011 29.0 6.9 59 116-178 124-182 (355)
70 3tb6_A Arabinose metabolism tr 53.6 28 0.00097 28.0 6.3 60 116-179 69-133 (298)
71 2o20_A Catabolite control prot 53.3 32 0.0011 28.8 6.7 59 116-178 117-175 (332)
72 3brs_A Periplasmic binding pro 52.6 32 0.0011 27.7 6.4 58 117-178 64-124 (289)
73 3ksm_A ABC-type sugar transpor 52.4 39 0.0013 26.8 6.9 60 117-180 57-120 (276)
74 1tjy_A Sugar transport protein 51.4 15 0.0005 30.8 4.3 64 116-181 58-123 (316)
75 3h75_A Periplasmic sugar-bindi 50.9 60 0.0021 27.2 8.2 34 117-150 61-95 (350)
76 3qhp_A Type 1 capsular polysac 50.8 63 0.0022 23.5 7.4 72 72-149 33-107 (166)
77 2pln_A HP1043, response regula 50.4 62 0.0021 22.6 7.3 75 70-152 17-97 (137)
78 2fn9_A Ribose ABC transporter, 49.0 42 0.0014 27.1 6.6 61 117-181 57-121 (290)
79 1tzb_A Glucose-6-phosphate iso 49.0 44 0.0015 28.3 7.0 44 117-161 78-125 (302)
80 3md9_A Hemin-binding periplasm 48.5 15 0.00051 29.9 3.8 32 116-147 57-88 (255)
81 2iks_A DNA-binding transcripti 48.4 25 0.00087 28.6 5.2 45 116-161 74-119 (293)
82 1jx6_A LUXP protein; protein-l 48.0 49 0.0017 27.5 7.1 100 52-152 16-139 (342)
83 3h5o_A Transcriptional regulat 47.7 56 0.0019 27.3 7.4 34 116-149 116-149 (339)
84 2hsg_A Glucose-resistance amyl 47.0 27 0.00091 29.2 5.2 108 52-161 31-158 (332)
85 2r7a_A Bacterial heme binding 45.9 17 0.00059 29.5 3.8 33 116-148 57-89 (256)
86 3dfz_A SIRC, precorrin-2 dehyd 45.7 19 0.00064 30.0 4.0 70 69-150 52-123 (223)
87 3r75_A Anthranilate/para-amino 45.7 44 0.0015 32.1 7.1 71 71-148 446-528 (645)
88 3o1i_D Periplasmic protein TOR 45.7 20 0.00069 29.1 4.1 30 117-147 62-93 (304)
89 2ioy_A Periplasmic sugar-bindi 45.3 52 0.0018 26.5 6.7 59 117-179 56-117 (283)
90 2vsy_A XCC0866; transferase, g 44.6 1.3E+02 0.0043 26.9 9.7 87 58-147 393-482 (568)
91 3qk7_A Transcriptional regulat 43.6 64 0.0022 26.2 7.0 60 117-176 186-256 (294)
92 3bil_A Probable LACI-family tr 43.5 28 0.00097 29.5 4.9 60 116-179 120-180 (348)
93 3uow_A GMP synthetase; structu 43.4 54 0.0019 30.7 7.2 75 71-149 7-91 (556)
94 4hwg_A UDP-N-acetylglucosamine 42.9 17 0.00056 32.3 3.4 34 117-151 93-126 (385)
95 4gud_A Imidazole glycerol phos 42.7 43 0.0015 26.4 5.6 68 73-149 4-80 (211)
96 3fro_A GLGA glycogen synthase; 42.5 1E+02 0.0036 25.9 8.4 90 56-150 268-362 (439)
97 2h0a_A TTHA0807, transcription 41.9 31 0.001 27.6 4.7 35 117-152 54-88 (276)
98 2r79_A Periplasmic binding pro 41.8 20 0.00067 29.8 3.5 32 116-147 57-88 (283)
99 1n2z_A Vitamin B12 transport p 41.4 19 0.00064 29.1 3.3 32 116-147 55-86 (245)
100 3ga2_A Endonuclease V; alpha-b 41.0 54 0.0018 27.9 6.1 64 103-166 86-162 (246)
101 2dri_A D-ribose-binding protei 40.8 57 0.002 26.1 6.2 60 117-180 56-118 (271)
102 3bbl_A Regulatory protein of L 40.2 97 0.0033 24.9 7.6 91 59-151 114-227 (287)
103 2bpl_A Glucosamine--fructose-6 39.8 48 0.0017 31.2 6.3 116 69-187 290-424 (608)
104 2x6q_A Trehalose-synthase TRET 39.1 1.8E+02 0.006 24.6 9.8 89 56-147 247-345 (416)
105 2gek_A Phosphatidylinositol ma 39.1 84 0.0029 26.3 7.2 86 56-147 225-313 (406)
106 2fvy_A D-galactose-binding per 39.1 48 0.0016 26.9 5.5 61 117-181 58-126 (309)
107 1gud_A ALBP, D-allose-binding 39.1 40 0.0014 27.4 5.0 61 117-181 58-128 (288)
108 3l49_A ABC sugar (ribose) tran 39.0 38 0.0013 27.3 4.8 59 117-180 60-120 (291)
109 3fij_A LIN1909 protein; 11172J 38.8 19 0.00064 30.0 2.9 19 130-148 97-115 (254)
110 4hv4_A UDP-N-acetylmuramate--L 38.6 93 0.0032 28.4 7.9 33 117-149 80-113 (494)
111 3uug_A Multiple sugar-binding 38.5 46 0.0016 27.4 5.3 62 117-182 58-123 (330)
112 3knz_A Putative sugar binding 38.4 2E+02 0.0069 25.1 11.9 113 68-187 220-345 (366)
113 3lvj_C Sulfurtransferase TUSA; 37.6 66 0.0023 22.0 5.2 46 63-108 29-74 (82)
114 3psh_A Protein HI_1472; substr 36.8 30 0.001 29.2 4.0 34 116-150 82-115 (326)
115 3k4h_A Putative transcriptiona 36.6 80 0.0027 25.3 6.5 116 59-175 120-259 (292)
116 3hz7_A Uncharacterized protein 36.6 52 0.0018 23.0 4.6 49 61-109 18-67 (87)
117 3lft_A Uncharacterized protein 36.4 47 0.0016 27.2 5.0 112 60-175 121-248 (295)
118 2jjm_A Glycosyl transferase, g 35.7 1.7E+02 0.0058 24.5 8.7 97 53-156 224-322 (394)
119 3g85_A Transcriptional regulat 35.3 39 0.0013 27.3 4.3 88 86-179 33-123 (289)
120 3egc_A Putative ribose operon 35.0 91 0.0031 25.0 6.6 92 59-151 114-225 (291)
121 3vot_A L-amino acid ligase, BL 34.8 1.1E+02 0.0038 26.6 7.5 55 115-169 1-62 (425)
122 2rgy_A Transcriptional regulat 34.7 1.4E+02 0.0049 23.9 7.8 90 60-151 118-228 (290)
123 2w36_A Endonuclease V; hypoxan 34.3 52 0.0018 27.6 4.9 50 103-152 80-142 (225)
124 3m3p_A Glutamine amido transfe 34.1 74 0.0025 26.5 5.9 75 71-149 3-90 (250)
125 2vpi_A GMP synthase; guanine m 34.0 1.1E+02 0.0036 24.8 6.8 74 72-149 25-104 (218)
126 1dbq_A Purine repressor; trans 34.0 1.8E+02 0.006 23.1 8.9 91 60-152 116-227 (289)
127 8abp_A L-arabinose-binding pro 33.9 83 0.0028 25.4 6.2 61 117-181 56-124 (306)
128 1f0k_A MURG, UDP-N-acetylgluco 33.6 98 0.0034 25.6 6.7 63 76-147 218-280 (364)
129 2rjo_A Twin-arginine transloca 33.5 46 0.0016 27.7 4.6 30 119-148 64-95 (332)
130 3k9c_A Transcriptional regulat 33.5 1.6E+02 0.0055 23.6 7.9 115 59-175 115-252 (289)
131 1gpw_B Amidotransferase HISH; 33.5 32 0.0011 27.0 3.4 34 117-150 41-86 (201)
132 3l7n_A Putative uncharacterize 33.3 28 0.00097 28.4 3.1 71 74-148 3-91 (236)
133 2iuy_A Avigt4, glycosyltransfe 33.2 2E+02 0.0068 23.5 9.1 83 55-147 177-271 (342)
134 3dbi_A Sugar-binding transcrip 32.8 1.6E+02 0.0055 24.3 7.9 114 60-174 171-308 (338)
135 3miz_A Putative transcriptiona 32.5 12 0.00042 30.7 0.7 58 116-178 68-126 (301)
136 1jdq_A TM006 protein, hypothet 32.5 80 0.0027 22.6 5.2 45 63-107 45-90 (98)
137 2vk2_A YTFQ, ABC transporter p 32.4 1E+02 0.0036 25.0 6.6 60 117-180 57-122 (306)
138 1dbq_A Purine repressor; trans 32.1 1.2E+02 0.0041 24.1 6.8 59 116-178 61-121 (289)
139 3jte_A Response regulator rece 31.9 1.3E+02 0.0044 21.0 7.0 78 71-152 3-88 (143)
140 2qu7_A Putative transcriptiona 31.8 47 0.0016 26.8 4.2 43 116-161 61-103 (288)
141 1k68_A Phytochrome response re 31.7 1.2E+02 0.0042 20.7 7.5 77 71-152 2-96 (140)
142 3miz_A Putative transcriptiona 31.6 49 0.0017 26.9 4.4 116 59-175 120-265 (301)
143 3tqi_A GMP synthase [glutamine 31.2 48 0.0016 30.8 4.6 74 71-148 10-89 (527)
144 3goc_A Endonuclease V; alpha-b 31.1 83 0.0028 26.6 5.7 62 102-166 83-157 (237)
145 3brq_A HTH-type transcriptiona 31.1 1.4E+02 0.0048 23.7 7.1 90 60-151 129-239 (296)
146 4evq_A Putative ABC transporte 31.0 1.6E+02 0.0055 24.3 7.7 86 61-147 142-238 (375)
147 3l49_A ABC sugar (ribose) tran 30.7 96 0.0033 24.8 6.0 117 59-175 112-260 (291)
148 2qzs_A Glycogen synthase; glyc 30.7 1.6E+02 0.0055 25.6 7.9 89 53-147 305-396 (485)
149 3hzh_A Chemotaxis response reg 30.6 1.4E+02 0.0049 21.4 6.5 73 73-151 38-121 (157)
150 2qh8_A Uncharacterized protein 30.3 68 0.0023 26.4 5.1 115 60-175 128-255 (302)
151 3heb_A Response regulator rece 30.2 1.5E+02 0.005 21.0 6.7 80 71-152 4-100 (152)
152 1rzu_A Glycogen synthase 1; gl 29.9 1.4E+02 0.0048 26.0 7.3 87 55-147 306-395 (485)
153 3d02_A Putative LACI-type tran 29.8 73 0.0025 25.7 5.1 34 117-151 60-95 (303)
154 1qv9_A F420-dependent methylen 29.8 50 0.0017 28.4 4.0 36 116-151 62-101 (283)
155 2qu7_A Putative transcriptiona 29.3 1.7E+02 0.0058 23.3 7.3 90 60-151 112-226 (288)
156 2etv_A Iron(III) ABC transport 29.0 34 0.0012 29.4 3.0 31 116-147 94-124 (346)
157 2fep_A Catabolite control prot 28.4 1.7E+02 0.0057 23.6 7.1 91 59-151 122-234 (289)
158 2x7x_A Sensor protein; transfe 27.9 72 0.0025 26.4 4.8 58 117-178 61-121 (325)
159 3dbi_A Sugar-binding transcrip 27.5 1.2E+02 0.0043 25.0 6.3 59 116-178 117-176 (338)
160 3clk_A Transcription regulator 27.0 1.7E+02 0.0057 23.5 6.8 90 60-151 115-224 (290)
161 1pav_A Hypothetical protein TA 26.9 56 0.0019 22.0 3.3 44 65-108 27-70 (78)
162 3f6c_A Positive transcription 26.8 1.5E+02 0.0053 20.2 6.4 78 73-153 3-86 (134)
163 4hn9_A Iron complex transport 26.1 40 0.0014 28.7 2.9 30 116-147 114-143 (335)
164 1qdl_B Protein (anthranilate s 25.4 2E+02 0.0068 22.3 6.9 71 74-148 4-84 (195)
165 2f9y_A Acetyl-COA carboxylase, 25.3 30 0.001 30.6 2.0 22 131-152 164-185 (339)
166 1ka9_H Imidazole glycerol phos 25.2 50 0.0017 26.0 3.2 32 118-149 40-83 (200)
167 3gyb_A Transcriptional regulat 25.2 91 0.0031 24.8 4.8 56 116-179 58-114 (280)
168 2f9i_A Acetyl-coenzyme A carbo 24.7 32 0.0011 30.3 2.0 22 131-152 150-171 (327)
169 1qpz_A PURA, protein (purine n 24.5 3E+02 0.01 22.7 8.5 91 60-152 167-278 (340)
170 2a9v_A GMP synthase; structura 23.9 1.1E+02 0.0039 24.3 5.2 71 73-149 15-93 (212)
171 2q8p_A Iron-regulated surface 23.7 32 0.0011 27.9 1.7 31 116-147 58-88 (260)
172 4fmw_A RNA (guanine-9-)-methyl 23.7 1.2E+02 0.004 24.6 5.2 35 51-85 38-72 (197)
173 1pjq_A CYSG, siroheme synthase 23.6 92 0.0032 28.2 5.0 27 118-144 72-100 (457)
174 3mm4_A Histidine kinase homolo 23.5 2.1E+02 0.0073 21.9 6.6 77 71-153 61-163 (206)
175 1gpm_A GMP synthetase, XMP ami 23.2 1.6E+02 0.0053 27.2 6.5 74 72-149 8-87 (525)
176 4dad_A Putative pilus assembly 22.9 2E+02 0.0068 20.1 6.6 79 71-152 20-106 (146)
177 2ywb_A GMP synthase [glutamine 21.8 1.7E+02 0.0058 26.8 6.5 72 74-149 2-79 (503)
178 4eyg_A Twin-arginine transloca 21.7 3.3E+02 0.011 22.2 8.3 87 61-148 130-230 (368)
179 2f9i_B Acetyl-coenzyme A carbo 21.6 40 0.0014 29.0 2.0 22 131-152 146-167 (285)
180 3okp_A GDP-mannose-dependent a 21.0 3E+02 0.01 22.6 7.5 86 56-146 214-308 (394)
181 2hsg_A Glucose-resistance amyl 21.0 1.9E+02 0.0063 23.8 6.1 90 60-151 167-278 (332)
182 3hn7_A UDP-N-acetylmuramate-L- 20.9 3.2E+02 0.011 24.9 8.2 33 117-149 79-112 (524)
183 2nrr_A Uvrabc system protein C 20.9 39 0.0013 26.9 1.6 34 117-150 78-114 (159)
184 1qpz_A PURA, protein (purine n 20.6 2.8E+02 0.0095 22.8 7.2 124 52-179 29-173 (340)
185 3g68_A Putative phosphosugar i 20.2 4.1E+02 0.014 22.8 13.1 120 68-195 205-337 (352)
No 1
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.5e-71 Score=480.29 Aligned_cols=201 Identities=72% Similarity=1.149 Sum_probs=189.4
Q ss_pred CCCCcccccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q psy16262 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSR 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~ 80 (222)
+|+++|+++|+++++++||+||+||||++|||+|++||||+|+||+|||||++|+++|++|++++..++++++||||+||
T Consensus 34 ~~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk 113 (253)
T 3bch_A 34 SSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSR 113 (253)
T ss_dssp --------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECS
T ss_pred cccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999977889999999999
Q ss_pred hhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEE
Q psy16262 81 PIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA 160 (222)
Q Consensus 81 ~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~Idyp 160 (222)
++++++|+++|+++|++||++||+||+||||++..+++||+|||+||..|++||+||+++||||||||||||||+.||||
T Consensus 114 ~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~ 193 (253)
T 3bch_A 114 NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA 193 (253)
T ss_dssp HHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEE
T ss_pred HHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCCccchHHHHHHHhCCCEEEEEcCCCCcccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhhhCCCCCCCCccccccc
Q psy16262 161 IPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYI 201 (222)
Q Consensus 161 IP~Ndds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~~~ 201 (222)
|||||||.+||.|++|+|++||+++||+++++.||++++-+
T Consensus 194 IP~Ndds~~SI~Li~~lla~aIl~grg~i~~~~~w~v~~dl 234 (253)
T 3bch_A 194 IPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPDL 234 (253)
T ss_dssp EESCCSSHHHHHHHHHHHHHHHHHHHTSSCSSSCCSSCGGG
T ss_pred eecCCcchhhHHHHHHHHHHHHHHhcCccCCCCCCccCcee
Confidence 99999999999999999999999999999999999998764
No 2
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=2.4e-70 Score=476.81 Aligned_cols=200 Identities=57% Similarity=0.925 Sum_probs=194.0
Q ss_pred CCCCcccccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q psy16262 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSR 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~ 80 (222)
||- .|++||+++++++||+||+||||++|||+|++||||+|+||+|||||++|+++|++|++++..++++++|||||||
T Consensus 1 ~~~-~~~l~~~e~~v~~lL~AGvH~G~~~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk 79 (252)
T 3u5c_A 1 MSL-PATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSR 79 (252)
T ss_dssp -CC-CSSCSCCHHHHHHHHHHTTTEECSSCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECS
T ss_pred CCc-chhcccCHHHHHHHHHCCeeccCCcCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 453 5999999999999999999999999999999999999988999999999999999999999988889999999999
Q ss_pred hhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEE
Q psy16262 81 PIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA 160 (222)
Q Consensus 81 ~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~Idyp 160 (222)
++++++|+++|+++|++||++||+||+||||+++.+++||+|||+||..|++||+||+++||||||||||||||++||||
T Consensus 80 ~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~ 159 (252)
T 3u5c_A 80 TFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVA 159 (252)
T ss_dssp HHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEECTTCCCTTCSSE
T ss_pred cHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCcccCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhhhCCC-CCCCCccccccc
Q psy16262 161 IPCNNKSPHSIGLMWWLLAREVLRFRGVI-GPDYLTILGTYI 201 (222)
Q Consensus 161 IP~Ndds~~si~li~~lL~~ai~~~~g~~-~~~~~~~~~~~~ 201 (222)
|||||||.+||.|++|+|+++|+++||++ +++.||++++-+
T Consensus 160 IP~Ndds~~SI~Li~~~La~aVl~~rg~i~s~~~~w~v~~dl 201 (252)
T 3u5c_A 160 IPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDL 201 (252)
T ss_dssp EECCTTSTTHHHHHHHHHHHHHHSSSSSCCSSSCCCSSCGGG
T ss_pred EeCCCCCcchHHHHHHHHHHHHHHhcCCcCcCCCCCccCcee
Confidence 99999999999999999999999999999 699999999876
No 3
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.4e-70 Score=484.41 Aligned_cols=200 Identities=73% Similarity=1.159 Sum_probs=184.0
Q ss_pred CCCCcccccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q psy16262 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSR 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~ 80 (222)
||+++|+++|+++++++||++|+||||++|||+|++||||+|+||+|||||++|+++|++|++++..++++++||||+||
T Consensus 1 m~~~~~~l~~~~~~~~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk 80 (295)
T 2zkq_b 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSR 80 (295)
T ss_dssp ------------CCHHHHHHHTTTBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECS
T ss_pred CCCccccccccHHHHHHHHhcCEEecCCcCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred hhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEE
Q psy16262 81 PIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA 160 (222)
Q Consensus 81 ~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~Idyp 160 (222)
++++++|+++|+++|++||++||+||+||||++..+++||+|||+||..|++||+||+++||||||||||||||++||||
T Consensus 81 ~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~ 160 (295)
T 2zkq_b 81 NTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIA 160 (295)
T ss_dssp HHHHHHHHHHHHHHCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTCCCTTCSEE
T ss_pred HHHHHHHHHHHHHhCCceecceEecccccCcccccccCCCeEEEeCCCcchhHHHHHHHhCCCEEEEecCCCCcccCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhhhCCCCCCCCcccccc
Q psy16262 161 IPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTY 200 (222)
Q Consensus 161 IP~Ndds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~~ 200 (222)
|||||||.+||.|++++|+++|+++||+++++.||+++.-
T Consensus 161 IP~Ndds~~SI~Li~~lla~aIl~~rg~i~~~~~w~v~~d 200 (295)
T 2zkq_b 161 IPCNNKGAHSVGLMWWMLAREVLRMRGTISREHPWEVMPD 200 (295)
T ss_dssp EESCSSCHHHHHHHHHHHHHHHHHCCSSSSCCCCCCCCHH
T ss_pred EeCCCCccchHHHHHHHHHHHHHHhcCcccCCCCCcccch
Confidence 9999999999999999999999999999999999999865
No 4
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.5e-70 Score=481.78 Aligned_cols=201 Identities=60% Similarity=0.969 Sum_probs=196.2
Q ss_pred CCCCcccccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecC
Q psy16262 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSR 80 (222)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~ 80 (222)
.+++.|++||+++++++||++|+||||++|||+|++||||+|+||+|||||++|+++|++|++++..++++++||||+||
T Consensus 5 ~~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk 84 (305)
T 3iz6_A 5 GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSAR 84 (305)
T ss_dssp CCSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEEECCS
T ss_pred cccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 36789999999999999999999999999999999999999966999999999999999999999999899999999999
Q ss_pred hhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEE
Q psy16262 81 PIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIA 160 (222)
Q Consensus 81 ~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~Idyp 160 (222)
++++++|+++|+++|++||++||+||+||||++..+++||+|||+||+.|++||+||+++||||||||||||||++|||+
T Consensus 85 ~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvDTnsdp~~VDy~ 164 (305)
T 3iz6_A 85 PYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIG 164 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEECTTSCGGGCSEE
T ss_pred HHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEcCCCCccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHhhhCCCCCCCCccccccc
Q psy16262 161 IPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYI 201 (222)
Q Consensus 161 IP~Ndds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~~~ 201 (222)
|||||||.+||.|++|+|+++|+++||++++++||+++.-+
T Consensus 165 IP~NDds~rSI~Li~~lLA~aVl~~rgtis~~~~w~v~pdl 205 (305)
T 3iz6_A 165 IPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDL 205 (305)
T ss_dssp EESCCSSTHHHHHHHHHHHHHHHHTTSSCCSCCCCCCCCSS
T ss_pred EeCCCCCccHHHHHHHHHHHHHHHhcCCCCCCCCcccCcee
Confidence 99999999999999999999999999999999999999865
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=9.8e-69 Score=465.21 Aligned_cols=195 Identities=44% Similarity=0.806 Sum_probs=190.6
Q ss_pred cccCCHHHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecChhhHHH
Q psy16262 7 ILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRA 86 (222)
Q Consensus 7 ~~~~~~~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~ 86 (222)
+++|+++++++||+||+||||++|||+|++||||+|+||+|||||++|+++|++|++++..++++++|||||||++++++
T Consensus 2 ~~~m~~~~~~~lL~AgvH~G~~~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~ 81 (241)
T 2xzm_B 2 ATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRA 81 (241)
T ss_dssp CCHHHHHHHHHHHHTTTTEECSCCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHH
T ss_pred cccccHHHHHHHHhcCeEeccCcCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 57899999999999999999999999999999999879999999999999999999999998889999999999999999
Q ss_pred HHHHHHHcCCccc-cccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCC
Q psy16262 87 VLKFASYTGATPI-AGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNN 165 (222)
Q Consensus 87 v~~~a~~~g~~yv-~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Nd 165 (222)
|+++|+++|++|| ++||+||+||||.++.+++||+|||+||..|++||+||+++||||||||||||||+.|||||||||
T Consensus 82 V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Nd 161 (241)
T 2xzm_B 82 AIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNN 161 (241)
T ss_dssp HHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCC
T ss_pred HHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHhhhCCCCCCCCccccccc
Q psy16262 166 KSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGTYI 201 (222)
Q Consensus 166 ds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~~~ 201 (222)
||.+||.|++|+|+++|+++||+++++.||++++-+
T Consensus 162 ds~~SI~Li~~~la~ail~~rg~i~~~~~~~v~~dl 197 (241)
T 2xzm_B 162 RSTESISMIYWMIAREVKILRGELSKDEEWEVMVDL 197 (241)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTSSCSSSCCCSCTTT
T ss_pred cccchHHHHHHHHHHHHHHhhCccCCCCCCCcCcce
Confidence 999999999999999999999999999999998764
No 6
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-67 Score=444.95 Aligned_cols=186 Identities=39% Similarity=0.687 Sum_probs=180.8
Q ss_pred HHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHH
Q psy16262 13 DDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFAS 92 (222)
Q Consensus 13 ~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~ 92 (222)
+++++||+||+||||+.|||+|++||||+|+||+|||||++||++|++|++++..+ ++++|||||||++++++|+++|+
T Consensus 7 v~~~~lL~AgvH~Gh~~~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~-~~~~ilfV~tk~~~~~~V~k~A~ 85 (202)
T 3j20_B 7 VPLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF-EPQSILAVSVRLYGQKPVKKFGE 85 (202)
T ss_dssp THHHHHHHHTCSBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS-CSSCEEEECCCTTTHHHHHHHHH
T ss_pred ccHHHHHhcCccccCCcCCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh-CCCeEEEEecChHHHHHHHHHHH
Confidence 58999999999999999999999999999989999999999999999999999887 78999999999999999999999
Q ss_pred HcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHH
Q psy16262 93 YTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIG 172 (222)
Q Consensus 93 ~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~ 172 (222)
++|++||++||+||+||||+++.+++||++||+||..|++|++||+++||||||+|||||||+.|||||||||||.+||.
T Consensus 86 ~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~ 165 (202)
T 3j20_B 86 VTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALA 165 (202)
T ss_dssp HHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHH
T ss_pred HHCCceeCceecCCCcccHhHHhccCCCeEEEeCCccchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCccccc
Q psy16262 173 LMWWLLAREVLRFRGVIGPDYLTILGT 199 (222)
Q Consensus 173 li~~lL~~ai~~~~g~~~~~~~~~~~~ 199 (222)
+++|+|++||+++||+++++++|.+..
T Consensus 166 Li~~~la~avl~~rg~i~~~~~~~~~~ 192 (202)
T 3j20_B 166 LIYWILAREILYNRGEIQSREDFKIPV 192 (202)
T ss_dssp HHHHHHHHHHHHHHTSSCSSSCCSSCT
T ss_pred HHHHHHHHHHHHhcCCcCCcCCCCCCH
Confidence 999999999999999999988897654
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=6.1e-65 Score=433.03 Aligned_cols=177 Identities=33% Similarity=0.656 Sum_probs=173.9
Q ss_pred HHHHHHHHcCceecCCcCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHH
Q psy16262 13 DDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFAS 92 (222)
Q Consensus 13 ~~~~~ll~a~~HlG~~~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~ 92 (222)
+++++||+||+||||+.+||+|++||||+|+||+|||||++|+++|++|++++..+ ++++||||+||++++++|+++|+
T Consensus 11 ~~~~~lL~AgvH~Gh~~~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i-~~~~iLfVgTk~~~~~~V~~~A~ 89 (208)
T 1vi6_A 11 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY-EPSKILLVAARQYAHKPVQMFSK 89 (208)
T ss_dssp SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS-CGGGEEEEECSGGGHHHHHHHHH
T ss_pred hhHHHHHhcCeEEcCCcCCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHH
Confidence 78999999999999998899999999999988999999999999999999999999 99999999999999999999999
Q ss_pred HcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHH
Q psy16262 93 YTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIG 172 (222)
Q Consensus 93 ~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~ 172 (222)
++|++||++||+||+||||.++.+++||++||+||..|++||+||+++||||||+|||||||+.|||||||||||.+||.
T Consensus 90 ~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~ 169 (208)
T 1vi6_A 90 VVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALA 169 (208)
T ss_dssp HHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHH
T ss_pred HhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCC
Q psy16262 173 LMWWLLAREVLRFRGVIG 190 (222)
Q Consensus 173 li~~lL~~ai~~~~g~~~ 190 (222)
|++|+|++||+++||+++
T Consensus 170 Li~~~la~ail~grg~~~ 187 (208)
T 1vi6_A 170 IVYWLLAREIAKIRGQDF 187 (208)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999887
No 8
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.4e-61 Score=418.49 Aligned_cols=175 Identities=21% Similarity=0.321 Sum_probs=165.6
Q ss_pred HHHHHHHHcCceecCC--cCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHH
Q psy16262 13 DDVTKMLGAQTHIGSE--NSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVA-IEHPADVFVISSRPIGQRAVLK 89 (222)
Q Consensus 13 ~~~~~ll~a~~HlG~~--~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~ 89 (222)
+++++||+||+||||+ +|||+|++||||+| ||+|||||++|+++|++|++++.. ++++|+||||||+++++++|++
T Consensus 4 i~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~R-ngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~ 82 (231)
T 3bbn_B 4 INLEEMMEAGVHFGHGTRKWNPRMSPYISAKC-KGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVAR 82 (231)
T ss_dssp CSSHHHHHTSSSSCCCSSCCCGGGGGGEEEEE-TTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHH
T ss_pred CCHHHHHHhCeEecCCcCcCCcccccceeccc-CCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHH
Confidence 4789999999999994 89999999999999 999999999999999999999996 6789999999999999999999
Q ss_pred HHHHcCCccccccccCCccchHHH------h----------------------------------------hccCCcEEE
Q psy16262 90 FASYTGATPIAGRFTPGAFTNQIQ------A----------------------------------------AFREPRLLV 123 (222)
Q Consensus 90 ~a~~~g~~yv~~rW~gG~LTN~i~------~----------------------------------------~~~~P~lvi 123 (222)
+|+++|++||++||+||+||||.+ + |.++||+||
T Consensus 83 ~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~ 162 (231)
T 3bbn_B 83 AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVI 162 (231)
T ss_dssp HHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEE
T ss_pred HHHHhCCccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEE
Confidence 999999999999999999999952 1 234899999
Q ss_pred EeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHHHHHhhhCC
Q psy16262 124 VTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGV 188 (222)
Q Consensus 124 i~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ai~~~~g~ 188 (222)
|+||..|++||+||+++||||||+|||||||+.|||||||||||.+||.+++++|++||++|++.
T Consensus 163 v~Dp~~e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~~ 227 (231)
T 3bbn_B 163 IVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSS 227 (231)
T ss_dssp ESCTTTTHHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSSC
T ss_pred EeCCccccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999853
No 9
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=3.3e-62 Score=427.77 Aligned_cols=184 Identities=27% Similarity=0.357 Sum_probs=170.5
Q ss_pred HHHHHHHHcCceecCC--cCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHH
Q psy16262 13 DDVTKMLGAQTHIGSE--NSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVA-IEHPADVFVISSRPIGQRAVLK 89 (222)
Q Consensus 13 ~~~~~ll~a~~HlG~~--~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~ 89 (222)
+++++||+||+||||+ +|||+|++||||+| ||+|||||++|+++|++|++++.. ++++|+||||||+++++++|++
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~ 83 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRM 83 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTT
T ss_pred ccHHHHHHcCeeeccCcCCCCCccccceeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 6788999999999996 89999999999999 999999999999999999999997 5789999999999999999999
Q ss_pred HHHHcCCccccccccCCccchHHH----------------------------------------------hhccCCcEEE
Q psy16262 90 FASYTGATPIAGRFTPGAFTNQIQ----------------------------------------------AAFREPRLLV 123 (222)
Q Consensus 90 ~a~~~g~~yv~~rW~gG~LTN~i~----------------------------------------------~~~~~P~lvi 123 (222)
+|+++|++||++||+||+||||.+ .|.++||+||
T Consensus 84 ~A~~~g~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~ 163 (256)
T 2vqe_B 84 EAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIF 163 (256)
T ss_dssp TTTSSSCCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEE
T ss_pred HHHHhCCeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEE
Confidence 999999999999999999999842 1237999999
Q ss_pred EeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHHHHHhhhCCCCCCCCccccc
Q psy16262 124 VTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVIGPDYLTILGT 199 (222)
Q Consensus 124 i~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ai~~~~g~~~~~~~~~~~~ 199 (222)
|+||..|++||+||+++||||||+|||||||+.|||||||||||.+||.|++|+|++||+++++. +..+|..-.
T Consensus 164 V~Dp~~e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~~--r~~~~~~~~ 237 (256)
T 2vqe_B 164 VVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGG--VVEPSPSYA 237 (256)
T ss_dssp ESCTTTTHHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTSC--CCCSCTTTT
T ss_pred EeCCccchHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHhh--hhccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998764 455666533
No 10
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=100.00 E-value=2.6e-61 Score=413.84 Aligned_cols=168 Identities=26% Similarity=0.322 Sum_probs=159.7
Q ss_pred HHHcCceecCC--cCCCcccccceeeccCCceeeeHHHHHHHHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHc
Q psy16262 18 MLGAQTHIGSE--NSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYT 94 (222)
Q Consensus 18 ll~a~~HlG~~--~~np~M~~yIyg~r~ngi~IInL~~T~~~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~ 94 (222)
||+||+||||+ +|||+|++||||+| ||+|||||++|+++|++|++++.. .+++++||||||+++++++|+++|+++
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R-~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~ 79 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGAR-NKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSC 79 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCT-TSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHS
T ss_pred CccccccccCCCCCCCCCccccccccc-CCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHc
Confidence 57999999997 59999999999999 999999999999999999999998 578999999999999999999999999
Q ss_pred CCccccccccCCccchHHH----------------------------------------------hhccCCcEEEEeCCC
Q psy16262 95 GATPIAGRFTPGAFTNQIQ----------------------------------------------AAFREPRLLVVTDPH 128 (222)
Q Consensus 95 g~~yv~~rW~gG~LTN~i~----------------------------------------------~~~~~P~lvii~dp~ 128 (222)
|++||++||+||+||||.+ .|.++||+|||+||.
T Consensus 80 g~~yv~~rWlgG~LTN~~ti~~~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGik~m~~~Pdllvv~Dp~ 159 (218)
T 3r8n_B 80 DQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDAD 159 (218)
T ss_dssp SCCEECSSCCSSSSTTTTTTHHHHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSSSSCSSCCCSCEEEETG
T ss_pred CCeeECCccCCCCccCHHHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccccccccCCCeEEecCcc
Confidence 9999999999999999842 022589999999999
Q ss_pred CCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHHHHHhhh
Q psy16262 129 TDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFR 186 (222)
Q Consensus 129 ~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ai~~~~ 186 (222)
.|++||+||+++||||||+|||||||+.|||||||||||.+||.+++++|++||++|+
T Consensus 160 ~e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 160 HEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp GGHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred cccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999886
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=95.96 E-value=0.095 Score=41.91 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=74.4
Q ss_pred eHHHHHHHHH----HHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHcCCcc------ccccccCC------------
Q psy16262 50 NLRRTWEKLL----LAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYTGATP------IAGRFTPG------------ 106 (222)
Q Consensus 50 nL~~T~~~L~----~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~y------v~~rW~gG------------ 106 (222)
++.+|...+. .++..+.. +.+.++|.++|...... +...++.+....+ +.-.+..+
T Consensus 15 ~l~~t~~~l~~~i~~~~~~~~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~ 93 (196)
T 2yva_A 15 TQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAA-NAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDR 93 (196)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTST
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEeCchhhH-HHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCC
Confidence 3555554433 23444443 56778999999987542 3334444322100 11112221
Q ss_pred ccc----hHHHhhccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC-------CcceEEccCCCCCch--
Q psy16262 107 AFT----NQIQAAFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL-------RFVDIAIPCNNKSPH-- 169 (222)
Q Consensus 107 ~LT----N~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~-------~~IdypIP~Ndds~~-- 169 (222)
.+. .++.....+=|++|++....+ ..+++.|++.|.++|+|.|...++ ..+.+.+|.+..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~~ 173 (196)
T 2yva_A 94 LHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQE 173 (196)
T ss_dssp TGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHHH
Confidence 011 111234567788888875444 458888999999999999975432 334555666554443
Q ss_pred hHHHHHHHHHHHHHhh
Q psy16262 170 SIGLMWWLLAREVLRF 185 (222)
Q Consensus 170 si~li~~lL~~ai~~~ 185 (222)
+.-+++..|+..+.+.
T Consensus 174 ~~l~~~~~L~~~~~~~ 189 (196)
T 2yva_A 174 MHMLTVNCLCDLIDNT 189 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666666543
No 12
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=95.23 E-value=0.73 Score=37.48 Aligned_cols=109 Identities=23% Similarity=0.285 Sum_probs=64.0
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHc---------CCccccccccCC----------------ccch
Q psy16262 57 KLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYT---------GATPIAGRFTPG----------------AFTN 110 (222)
Q Consensus 57 ~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~---------g~~yv~~rW~gG----------------~LTN 110 (222)
.+.+|+..+.. ++++++|.++|....+. +...++.+. |... ...+| .+..
T Consensus 31 ~i~~a~~~i~~al~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~r~g~~~---~~~~~d~~~~~a~~~d~~~~~~~~~ 106 (201)
T 3trj_A 31 AIAQAAKAMVSCLENGGKVLVCGNGSSGV-IAQHFTSKLLNHFEMERPPLPA---IALTGDVATITAVGNHYGFSQIFAK 106 (201)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHC-------CCCE---EETTSCHHHHHHHHHHTCGGGTTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHhcCccCCCCCCCce---EEccCChHHHHHhccCCCHHHHHHH
Confidence 35566666664 67889999999887543 223333332 3221 12221 1222
Q ss_pred HHHhhccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC-C-cc---eEEccCCCCCch
Q psy16262 111 QIQAAFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL-R-FV---DIAIPCNNKSPH 169 (222)
Q Consensus 111 ~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~-~-~I---dypIP~Ndds~~ 169 (222)
++.....+=|++|++...-+ ..+++.|+..|+|+|+|.+...++ . .. |+.|....+...
T Consensus 107 ~l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~~l~~~~~~~~ 174 (201)
T 3trj_A 107 QVAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDNIA 174 (201)
T ss_dssp HHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCEEEEESCCCHH
T ss_pred HHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCEEEEeCCCCch
Confidence 22334567888888875444 467889999999999999865433 2 23 555444444443
No 13
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=94.98 E-value=0.61 Score=37.93 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=58.7
Q ss_pred HHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHH----HH-----cCCcccccccc--CCccc-------------hHH
Q psy16262 58 LLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFA----SY-----TGATPIAGRFT--PGAFT-------------NQI 112 (222)
Q Consensus 58 L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a----~~-----~g~~yv~~rW~--gG~LT-------------N~i 112 (222)
+.+++..+.. +.+.++|.+++...... +...++ .+ .|... ... ++.+| ...
T Consensus 50 i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~A~~~a~~l~~~~~~~~~g~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~ 125 (212)
T 2i2w_A 50 IQRAAVLLADSFKAGGKVLSCGNGGSHC-DAMHFAEELTGRYRENRPGYPA---IAISDVSHISCVGNDFGFNDIFSRYV 125 (212)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHHHHCTTSSSCSE---EECCCTTCGGGGSCCCSCSSHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHHHHHHhhhcccCCCCeE---EecCChHHhhHhhccCCHHHHHHHHH
Confidence 4445555543 56778999999986543 222233 11 22211 111 22222 112
Q ss_pred HhhccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC--CcceEEccCC
Q psy16262 113 QAAFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL--RFVDIAIPCN 164 (222)
Q Consensus 113 ~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~--~~IdypIP~N 164 (222)
.....+-|++|++....+ ..++++|+..|.|+|+|.|...++ +..|+.|...
T Consensus 126 ~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~~ 183 (212)
T 2i2w_A 126 EAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVP 183 (212)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEEC
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEcC
Confidence 234567788888875444 567889999999999999975433 2345544443
No 14
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=94.77 E-value=0.29 Score=38.64 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=65.4
Q ss_pred hCCCcEEEEecChhhHHHHHHHHH---HcCCccccccccC--C-ccchHHHhhccCCcEEEEeCCCCC----chhhhHhh
Q psy16262 69 EHPADVFVISSRPIGQRAVLKFAS---YTGATPIAGRFTP--G-AFTNQIQAAFREPRLLVVTDPHTD----HQPITEAA 138 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~~~~v~~~a~---~~g~~yv~~rW~g--G-~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~ 138 (222)
.+.++|.++|...... +...++. +.|... ..++ + .+... .....+-|++|++....+ ..+++.|+
T Consensus 37 ~~a~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~---~~~~~~~~~~~~~-~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak 111 (187)
T 3sho_A 37 CRADHVIVVGMGFSAA-VAVFLGHGLNSLGIRT---TVLTEGGSTLTIT-LANLRPTDLMIGVSVWRYLRDTVAALAGAA 111 (187)
T ss_dssp HHCSEEEEECCGGGHH-HHHHHHHHHHHTTCCE---EEECCCTHHHHHH-HHTCCTTEEEEEECCSSCCHHHHHHHHHHH
T ss_pred HhCCEEEEEecCchHH-HHHHHHHHHHhcCCCE---EEecCCchhHHHH-HhcCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 3456898998886432 2333333 233321 1222 1 11111 133456788888875444 45678899
Q ss_pred hcCCCEEEEecCCCCC----CcceEEccCCC----CCchhHHHHHHHHHHHHHhhh
Q psy16262 139 YVNIPVIAFCNTESPL----RFVDIAIPCNN----KSPHSIGLMWWLLAREVLRFR 186 (222)
Q Consensus 139 ~l~IP~IalvDTd~~~----~~IdypIP~Nd----ds~~si~li~~lL~~ai~~~~ 186 (222)
+.|.|+|+|.|...++ ..+.+.+|... +|..+.-+++.+|...+....
T Consensus 112 ~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~~~~~ 167 (187)
T 3sho_A 112 ERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEIAVRE 167 (187)
T ss_dssp HTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHHHHhC
Confidence 9999999999975544 12444445443 445666777777777776544
No 15
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=94.51 E-value=1.1 Score=35.79 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=67.0
Q ss_pred HHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHc-CC-----ccccccccCCc---cc-------------hHHHhh
Q psy16262 59 LLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYT-GA-----TPIAGRFTPGA---FT-------------NQIQAA 115 (222)
Q Consensus 59 ~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~-g~-----~yv~~rW~gG~---LT-------------N~i~~~ 115 (222)
.+++..+.. +.+.++|.+++...... +...++.+. +. .-+.-....+. ++ .+....
T Consensus 32 ~~~~~~i~~~i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 110 (199)
T 1x92_A 32 EQASLVMVNALLNEGKILSCGNGGSAG-DAQHFSSELLNRFERERPSLPAVALTTDSSTITSIANDYSYNEVFSKQIRAL 110 (199)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHTCSSSCCCCCCEEETTCCHHHHHHHHHHTCGGGTTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEcCchhHH-HHHHHHHHHhcCcccCCCCCceEecCCChhHHHHhhcCccHHHHHHHHHHhC
Confidence 345544443 56778999999887542 334444443 11 00000111110 00 011233
Q ss_pred ccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC--Cc---ceEEccCCCCCch----hHHHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL--RF---VDIAIPCNNKSPH----SIGLMWWLLAREV 182 (222)
Q Consensus 116 ~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~--~~---IdypIP~Ndds~~----si~li~~lL~~ai 182 (222)
..+-|++|++....+ ..+++.|++.|.|+|+|.|...+| +. .|+.|........ +.-+++.+|+..+
T Consensus 111 ~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~~~~~~~~~~l~i~~~L~~~~ 190 (199)
T 1x92_A 111 GQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSKITARIQEVHLLAIHCLCDLI 190 (199)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCCchHHHHHHHHHHHHHHHHHH
Confidence 567788888875444 458888999999999999975443 12 4665555444432 2233444444444
Q ss_pred H
Q psy16262 183 L 183 (222)
Q Consensus 183 ~ 183 (222)
.
T Consensus 191 ~ 191 (199)
T 1x92_A 191 D 191 (199)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=94.32 E-value=0.29 Score=42.65 Aligned_cols=141 Identities=18% Similarity=0.216 Sum_probs=81.2
Q ss_pred eHHHHHHHHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHH---HHcCCc--cccccccCCccc--------------
Q psy16262 50 NLRRTWEKLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFA---SYTGAT--PIAGRFTPGAFT-------------- 109 (222)
Q Consensus 50 nL~~T~~~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a---~~~g~~--yv~~rW~gG~LT-------------- 109 (222)
.+++|...+..++..+.. +.+.++|.++|....+.-+...+. ...|.. .+.+-..+|.-.
T Consensus 49 ai~~t~~~i~~~i~~i~~~l~~a~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l~~~g~~a~~~a~e~~ed~~~~ 128 (306)
T 1nri_A 49 AIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKA 128 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHHHhcchHHHhhhhhcccCcHHH
Confidence 355666666655555554 678899999998876543322222 222321 111111223111
Q ss_pred --hHHH-hhccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC--CcceEEccCCC-----------CCch
Q psy16262 110 --NQIQ-AAFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL--RFVDIAIPCNN-----------KSPH 169 (222)
Q Consensus 110 --N~i~-~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~--~~IdypIP~Nd-----------ds~~ 169 (222)
-.+. .....-|++|++...-+ ..+++.|+..|.+||+|.+...++ +..|+.|.... +|..
T Consensus 129 ~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~t 208 (306)
T 1nri_A 129 VLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGT 208 (306)
T ss_dssp HHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHH
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHH
Confidence 0111 12457788888875444 567888999999999999875544 23555554432 1223
Q ss_pred hHHHHHHHHHHHHHhhhCCCC
Q psy16262 170 SIGLMWWLLAREVLRFRGVIG 190 (222)
Q Consensus 170 si~li~~lL~~ai~~~~g~~~ 190 (222)
+..+++.+|+.++....|..-
T Consensus 209 a~~~vl~~L~~~~~~~~g~~~ 229 (306)
T 1nri_A 209 AQKMVLNMLTTASMILLGKCY 229 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTSCB
T ss_pred HHHHHHHHHHHHHHHHccHHH
Confidence 455778888888877666443
No 17
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=94.29 E-value=0.72 Score=37.97 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=70.6
Q ss_pred HHHHHHHHHH--hhCCCcEEEEecChhhHHHHHHHHHH---cCCccccccccC-CccchHHHhhccCCcEEEEeCCCCC-
Q psy16262 58 LLLAARAIVA--IEHPADVFVISSRPIGQRAVLKFASY---TGATPIAGRFTP-GAFTNQIQAAFREPRLLVVTDPHTD- 130 (222)
Q Consensus 58 L~~a~~~i~~--i~~~~~ILfv~t~~~~~~~v~~~a~~---~g~~yv~~rW~g-G~LTN~i~~~~~~P~lvii~dp~~d- 130 (222)
+.+++..+.. ++..++|.|++...... +.+.++.+ .|... .+++ +.+.........+=|++|++...-+
T Consensus 44 i~~~~~~i~~~a~~~a~~I~i~G~G~S~~-~A~~~~~~l~~lg~~~---~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t 119 (220)
T 3etn_A 44 YEKAVELIVEQIHRKKGKLVTSGMGKAGQ-IAMNIATTFCSTGIPS---VFLHPSEAQHGDLGILQENDLLLLISNSGKT 119 (220)
T ss_dssp HHHHHHHHHHHTTTTCCCEEEECSHHHHH-HHHHHHHHHHHTTCCE---EECCTTGGGBTGGGGCCTTCEEEEECSSSCC
T ss_pred HHHHHHHHHhHhhccCCEEEEEEecHHHH-HHHHHHHHHHhcCCcE---EEeCCHHHHHhhhccCCCCCEEEEEcCCCCC
Confidence 3445555543 22368899998876432 23333332 33321 1222 2111111133456688888875444
Q ss_pred ---chhhhHhhh--cCCCEEEEecCCCCC--CcceE--EccCCCC----------CchhHHHHHHHHHHHHHhhhCC
Q psy16262 131 ---HQPITEAAY--VNIPVIAFCNTESPL--RFVDI--AIPCNNK----------SPHSIGLMWWLLAREVLRFRGV 188 (222)
Q Consensus 131 ---~~aI~Ea~~--l~IP~IalvDTd~~~--~~Idy--pIP~Ndd----------s~~si~li~~lL~~ai~~~~g~ 188 (222)
..++++|+. .|.++|+|.|...++ +..|+ .+|.... |.-+.-+++.+|+-.+...+|.
T Consensus 120 ~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~~~~~~S~~~~l~lld~L~~~l~~~~g~ 196 (220)
T 3etn_A 120 REIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEF 196 (220)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTSCSSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCcccccccccchHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467788999 999999999875544 22444 4444322 2224566677777777776664
No 18
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=94.16 E-value=1.7 Score=34.36 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=60.0
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHc----CCc--cccccccCC-c--cc-------------hHHH
Q psy16262 57 KLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYT----GAT--PIAGRFTPG-A--FT-------------NQIQ 113 (222)
Q Consensus 57 ~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~----g~~--yv~~rW~gG-~--LT-------------N~i~ 113 (222)
.+.+++..+.. +.+.++|.++|...... +...++... +.. -+.-....+ . ++ ....
T Consensus 33 ~i~~~~~~i~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 111 (198)
T 2xbl_A 33 TVRKVADACIASIAQGGKVLLAGNGGSAA-DAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQ 111 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSTHHHH-HHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCcHhhH-HHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHH
Confidence 45556666553 56778999999886543 333343321 100 011112221 1 11 1122
Q ss_pred hhccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC--CcceE--EccCCC
Q psy16262 114 AAFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL--RFVDI--AIPCNN 165 (222)
Q Consensus 114 ~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~--~~Idy--pIP~Nd 165 (222)
....+=|++|++....+ ..++++|++.|.|+|+|.|...++ +..|+ .+|.++
T Consensus 112 ~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~~ 171 (198)
T 2xbl_A 112 ALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSAD 171 (198)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCSS
T ss_pred hhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCCc
Confidence 33466788888875444 567888999999999999975544 22444 455443
No 19
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=94.10 E-value=0.3 Score=39.20 Aligned_cols=113 Identities=8% Similarity=0.093 Sum_probs=63.3
Q ss_pred CcEEEEecChhhHHHHHHHHHH---cCCccccccccCCc-cchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcCCC
Q psy16262 72 ADVFVISSRPIGQRAVLKFASY---TGATPIAGRFTPGA-FTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVNIP 143 (222)
Q Consensus 72 ~~ILfv~t~~~~~~~v~~~a~~---~g~~yv~~rW~gG~-LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP 143 (222)
++|.|++...... +.+.++.+ .|... .++... +.........+=|++|++...-+ ..+++.|++.|.+
T Consensus 46 ~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~---~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~ 121 (201)
T 3fxa_A 46 GKIVVAGCGTSGV-AAKKLVHSFNCIERPA---VFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGST 121 (201)
T ss_dssp SCEEEECCTHHHH-HHHHHHHHHHHTTCCE---EECCHHHHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCE
T ss_pred CcEEEEEecHHHH-HHHHHHHHHHhcCCcE---EEeCchHHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe
Confidence 5899999886532 23333333 23221 122110 00001122356688888875444 4677889999999
Q ss_pred EEEEecCCCCC----CcceEEccCCCC----------CchhHHHHHHHHHHHHHhhhCC
Q psy16262 144 VIAFCNTESPL----RFVDIAIPCNNK----------SPHSIGLMWWLLAREVLRFRGV 188 (222)
Q Consensus 144 ~IalvDTd~~~----~~IdypIP~Ndd----------s~~si~li~~lL~~ai~~~~g~ 188 (222)
+|+|.|...+| ..+.+.+|...+ |..+..+++.+|+..+.+.+|.
T Consensus 122 vi~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l~~~d~L~~~l~~~~g~ 180 (201)
T 3fxa_A 122 LIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNY 180 (201)
T ss_dssp EEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999976554 234444555332 2334555666777777666654
No 20
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=93.88 E-value=0.63 Score=36.67 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCCcEEEEecChhhHHHHHHHHHH---cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcCC
Q psy16262 70 HPADVFVISSRPIGQRAVLKFASY---TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVNI 142 (222)
Q Consensus 70 ~~~~ILfv~t~~~~~~~v~~~a~~---~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~I 142 (222)
+.++|.++|..... .+...++.+ .|... .+.+... .....+-|++|++....+ ..++++|+..|.
T Consensus 36 ~a~~I~i~G~G~S~-~~A~~~~~~l~~~g~~~---~~~~~~~----~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~ 107 (186)
T 1m3s_A 36 SSHQIFTAGAGRSG-LMAKSFAMRLMHMGFNA---HIVGEIL----TPPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHG 107 (186)
T ss_dssp HCSCEEEECSHHHH-HHHHHHHHHHHHTTCCE---EETTSTT----CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHTTC
T ss_pred cCCeEEEEecCHHH-HHHHHHHHHHHhcCCeE---EEeCccc----ccCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCC
Confidence 44688888887543 223333333 33321 1222221 123356788888875544 457889999999
Q ss_pred CEEEEecCCCCC----CcceEEccCCCCC-----------ch-----hHHHHHHHHHHHHHhhhCCC
Q psy16262 143 PVIAFCNTESPL----RFVDIAIPCNNKS-----------PH-----SIGLMWWLLAREVLRFRGVI 189 (222)
Q Consensus 143 P~IalvDTd~~~----~~IdypIP~Ndds-----------~~-----si~li~~lL~~ai~~~~g~~ 189 (222)
|+|+|.|...++ ..+.+.+|..... .. +..+++.+|+..+...+|..
T Consensus 108 ~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~L~~~~~~~~~~~ 174 (186)
T 1m3s_A 108 IVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLD 174 (186)
T ss_dssp EEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999975443 1244455654432 11 34577788888887766653
No 21
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=93.58 E-value=1.7 Score=34.02 Aligned_cols=110 Identities=10% Similarity=0.173 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHc----CCcc--ccccccCC-c--cc-------------hHH
Q psy16262 56 EKLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYT----GATP--IAGRFTPG-A--FT-------------NQI 112 (222)
Q Consensus 56 ~~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~----g~~y--v~~rW~gG-~--LT-------------N~i 112 (222)
+.+.+++..+.. +.+.++|.++|...... +...++... +... +.-...++ . +| .+.
T Consensus 26 ~~i~~~~~~i~~~l~~~~~I~i~G~G~S~~-~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 104 (188)
T 1tk9_A 26 GQIAKVGELLCECLKKGGKILICGNGGSAA-DAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV 104 (188)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHH-HHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHH-HHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHH
Confidence 456666666663 66778999999987542 333344322 1110 11112221 1 11 011
Q ss_pred HhhccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC-C-cceEEccCCCC
Q psy16262 113 QAAFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL-R-FVDIAIPCNNK 166 (222)
Q Consensus 113 ~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~-~-~IdypIP~Ndd 166 (222)
.....+=|++|++....+ ..+++.|++.|.|+|+|.+...++ . ..|+.|.....
T Consensus 105 ~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~ 164 (188)
T 1tk9_A 105 EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSD 164 (188)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCS
T ss_pred HHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCC
Confidence 223466788888875444 457788999999999999975444 2 24554444333
No 22
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=93.19 E-value=0.55 Score=36.85 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=59.6
Q ss_pred CcEEEEecChhhHHHHHHHHHHc---CCccccccccC-CccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcCCC
Q psy16262 72 ADVFVISSRPIGQRAVLKFASYT---GATPIAGRFTP-GAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVNIP 143 (222)
Q Consensus 72 ~~ILfv~t~~~~~~~v~~~a~~~---g~~yv~~rW~g-G~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP 143 (222)
++|.++|...... +.+.++.+. |... ..+. +...........+-|++|++....+ ..+++.|++.|.|
T Consensus 50 ~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~---~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~ 125 (183)
T 2xhz_A 50 GKVVVMGMGASGH-IGRKMAATFASTGTPS---FFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVP 125 (183)
T ss_dssp SCEEEEECHHHHH-HHHHHHHHHHTTTCCE---EECCTTHHHHHTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCC
T ss_pred CeEEEEeecHHHH-HHHHHHHHHHhcCceE---EEeCchHHhhhhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 5898998876442 334444443 2221 1111 1110000022346688888875444 4567888999999
Q ss_pred EEEEecCCCCCC--cceE--EccCCCC----------CchhHHHHHHHHHHHHHhhh
Q psy16262 144 VIAFCNTESPLR--FVDI--AIPCNNK----------SPHSIGLMWWLLAREVLRFR 186 (222)
Q Consensus 144 ~IalvDTd~~~~--~Idy--pIP~Ndd----------s~~si~li~~lL~~ai~~~~ 186 (222)
+|+|.|...++- ..|+ .+|.... |..+..+++.+|...+.+.+
T Consensus 126 vi~IT~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~S~~~~~~~~d~L~~~~~~~~ 182 (183)
T 2xhz_A 126 LICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKAR 182 (183)
T ss_dssp EEEEESCTTSHHHHHSSEEEECCCSCCSSTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChhHHhCCEEEEeCCCccccccCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 999999765442 2444 4454221 12344455666666665444
No 23
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=93.09 E-value=0.6 Score=36.58 Aligned_cols=113 Identities=16% Similarity=0.197 Sum_probs=63.1
Q ss_pred hhCCCcEEEEecChhhHHHHHHHHHH---cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhc
Q psy16262 68 IEHPADVFVISSRPIGQRAVLKFASY---TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYV 140 (222)
Q Consensus 68 i~~~~~ILfv~t~~~~~~~v~~~a~~---~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l 140 (222)
+.+.++|.|+|...... +...++.+ .|... .+.+... .....+-|++|++....+ ..++++|++.
T Consensus 37 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~---~~~~~~~----~~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~ 108 (180)
T 1jeo_A 37 IIKAKKIFIFGVGRSGY-IGRCFAMRLMHLGFKS---YFVGETT----TPSYEKDDLLILISGSGRTESVLTVAKKAKNI 108 (180)
T ss_dssp HHHCSSEEEECCHHHHH-HHHHHHHHHHHTTCCE---EETTSTT----CCCCCTTCEEEEEESSSCCHHHHHHHHHHHTT
T ss_pred HHhCCEEEEEeecHHHH-HHHHHHHHHHHcCCeE---EEeCCCc----cccCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 33456898988875432 23333333 33321 1222211 122345678887765443 4567889999
Q ss_pred CCCEEEEecCCCCCC-cce--EEccCCCC---Cch-----hHHHHHHHHHHHHHhhhCC
Q psy16262 141 NIPVIAFCNTESPLR-FVD--IAIPCNNK---SPH-----SIGLMWWLLAREVLRFRGV 188 (222)
Q Consensus 141 ~IP~IalvDTd~~~~-~Id--ypIP~Ndd---s~~-----si~li~~lL~~ai~~~~g~ 188 (222)
|.|+|+|.|...+.. ..| +.+|...+ +.. +..+++.+|+..+.+.+|.
T Consensus 109 g~~vi~IT~~~~sl~~~ad~~l~~~~~~~~~~~~~s~~~~~~~~~ld~L~~~~~~~~~~ 167 (180)
T 1jeo_A 109 NNNIIAIVCECGNVVEFADLTIPLEVKKSKYLPMGTTFEETALIFLDLVIAEIMKRLNL 167 (180)
T ss_dssp CSCEEEEESSCCGGGGGCSEEEECCCCCBTTBCTTHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCChHHHhCCEEEEeCCcccccccchhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999998643232 234 44454332 122 3356777887777766553
No 24
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=92.92 E-value=0.62 Score=37.63 Aligned_cols=113 Identities=16% Similarity=0.171 Sum_probs=64.6
Q ss_pred hhCCCcEEEEecChhhHHHHHHHHHH---cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhc
Q psy16262 68 IEHPADVFVISSRPIGQRAVLKFASY---TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYV 140 (222)
Q Consensus 68 i~~~~~ILfv~t~~~~~~~v~~~a~~---~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l 140 (222)
+.+.++|.+++...... +.+.++.+ .|... .+.+...+ ....+=|++|++...-+ ..+++.|++.
T Consensus 44 i~~a~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~---~~~~~~~~----~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~ 115 (200)
T 1vim_A 44 IDSARSIFVIGAGRSGY-IAKAFAMRLMHLGYTV---YVVGETVT----PRITDQDVLVGISGSGETTSVVNISKKAKDI 115 (200)
T ss_dssp HHHSSCEEEECSHHHHH-HHHHHHHHHHHTTCCE---EETTSTTC----CCCCTTCEEEEECSSSCCHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEecHHHH-HHHHHHHHHHhcCCeE---EEeCCccc----cCCCCCCEEEEEeCCCCcHHHHHHHHHHHHC
Confidence 34456898888876432 33444443 23221 11222211 22346688888875444 4577888999
Q ss_pred CCCEEEEecCCCCCC--cceE--EccCCCCCc----------------hhHHHHHHHHHHHHHhhhCC
Q psy16262 141 NIPVIAFCNTESPLR--FVDI--AIPCNNKSP----------------HSIGLMWWLLAREVLRFRGV 188 (222)
Q Consensus 141 ~IP~IalvDTd~~~~--~Idy--pIP~Ndds~----------------~si~li~~lL~~ai~~~~g~ 188 (222)
|+|+|+|.+...++- ..|+ .+|..+... .++.+++.+|...+...+|.
T Consensus 116 g~~vI~IT~~~~s~La~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lld~L~~~~~~~~~~ 183 (200)
T 1vim_A 116 GSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHL 183 (200)
T ss_dssp TCEEEEEESCTTSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCChHHHhCCEEEEECCcccccCCcccccccccccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999754432 2444 455544321 12346677777777766554
No 25
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=89.83 E-value=2.3 Score=37.51 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=62.0
Q ss_pred CCcEEEEecChhhH--HHHHHHHHH-cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcCCC
Q psy16262 71 PADVFVISSRPIGQ--RAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVNIP 143 (222)
Q Consensus 71 ~~~ILfv~t~~~~~--~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP 143 (222)
.++|.|+++..... ...+.+.++ .|..... ..++-+.........+.|++|++...-+ ..++++|+..|.+
T Consensus 54 ~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~ 131 (355)
T 2a3n_A 54 FSSLFFASVGGSLAPMMAINEFAKELTTLPVYV--EQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWCKAQGIR 131 (355)
T ss_dssp CSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEE--EEHHHHHHHCCTTCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHhhcCCeEEE--cCcHHHHhhchhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCe
Confidence 57898988876432 122233333 4443211 1111110000012357888888886554 5688899999999
Q ss_pred EEEEecCCCCC--CcceE--EccCCCCCchhHHHHHHHHHHHHHhhhC
Q psy16262 144 VIAFCNTESPL--RFVDI--AIPCNNKSPHSIGLMWWLLAREVLRFRG 187 (222)
Q Consensus 144 ~IalvDTd~~~--~~Idy--pIP~Ndds~~si~li~~lL~~ai~~~~g 187 (222)
+|+|++...++ +..|+ .+|+..++ .+-.+++.+++-.++..+|
T Consensus 132 vi~IT~~~~S~La~~ad~~l~~~~~~~~-~~~~~~~~ll~~~l~~~~~ 178 (355)
T 2a3n_A 132 VVAITKNADSPLAQAATWHIPMRHKNGV-EYEYMLLYWLFFRVLSRNN 178 (355)
T ss_dssp EEEEESCTTSHHHHTCSEEEECCCSSCH-HHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChhhHhCCEEEEeCCCcch-hHHHHHHHHHHHHHHHHcC
Confidence 99999875433 12444 45554443 2333444455555666665
No 26
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=89.27 E-value=3.4 Score=36.68 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=46.5
Q ss_pred ccCCcEEEEeCCCCC----chhhhHhhhc-CCCEEEEecCCCCC-C-cceEE--ccCCCC-C------chhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD----HQPITEAAYV-NIPVIAFCNTESPL-R-FVDIA--IPCNNK-S------PHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d----~~aI~Ea~~l-~IP~IalvDTd~~~-~-~Idyp--IP~Ndd-s------~~si~li~~lL~ 179 (222)
..+.|++|++...-+ ..++++|+.. |.++|+|+|...++ . ..|+. +|+..+ + ..+--..+.+|+
T Consensus 95 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E~~~~~t~s~ts~~~~l~ll~ 174 (373)
T 2aml_A 95 SSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLMLTG 174 (373)
T ss_dssp CTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCccccccccccHHHHHHHHHHHH
Confidence 456788888886555 5688899999 99999999975433 2 24444 444332 1 223233445555
Q ss_pred HHHHhhhCCCC
Q psy16262 180 REVLRFRGVIG 190 (222)
Q Consensus 180 ~ai~~~~g~~~ 190 (222)
-.+.+.+|.++
T Consensus 175 ~~l~~~~g~~~ 185 (373)
T 2aml_A 175 LHFAYKTVQID 185 (373)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHHhCCCC
Confidence 55555566544
No 27
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=87.63 E-value=10 Score=33.66 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=69.4
Q ss_pred hhCCCcEEEEecChhh--HHHHHHHHHH-cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhc
Q psy16262 68 IEHPADVFVISSRPIG--QRAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYV 140 (222)
Q Consensus 68 i~~~~~ILfv~t~~~~--~~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l 140 (222)
..+.++|.|+++.... ....+.+..+ .|..... ..++.+.... ....+.|++|++...-+ ..+++.|+..
T Consensus 47 ~~~a~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~--~~~se~~~~~-~~~~~~dlvI~iS~SGeT~e~l~a~~~ak~~ 123 (366)
T 3knz_A 47 ERGVTRIILTGSGTSYHGALTARTFMQRWCALPVDV--CWPFMLDDET-LARSGKALVVGISQGGGSLSTLAAMERARNV 123 (366)
T ss_dssp HTTCCEEEEECCHHHHHHHHHHHHHHHHHHTSCEEE--ECGGGCCHHH-HHHSCSEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEEEechHHHHHHHHHHHHHHHHCCCeEE--EcchHHHhhc-cCCCCCCEEEEEcCCCCCHHHHHHHHHHHHc
Confidence 4567889999888652 1223333333 4544211 2233333222 22367888888875444 5789999999
Q ss_pred CCCEEEEecCC-CCCC-cceEEccCCCC---------CchhHHHHHHHHHHHHHhhhCCCC
Q psy16262 141 NIPVIAFCNTE-SPLR-FVDIAIPCNNK---------SPHSIGLMWWLLAREVLRFRGVIG 190 (222)
Q Consensus 141 ~IP~IalvDTd-~~~~-~IdypIP~Ndd---------s~~si~li~~lL~~ai~~~~g~~~ 190 (222)
|.++|+|++.. +.+. ..|+.|+.... |..+--+.+.+|+-.+.+.+|.++
T Consensus 124 Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E~~~a~tks~tsql~~l~lLa~~l~~~~g~~~ 184 (366)
T 3knz_A 124 GHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQQQRLD 184 (366)
T ss_dssp TCEEEEEESSSSCGGGGGCSEECCCCCCC------CTHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCEEEEECCCCChhhhhcCEEEecCCCccccccccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999864 4332 46776655422 122222345566666666677654
No 28
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=82.49 E-value=7 Score=34.44 Aligned_cols=119 Identities=15% Similarity=0.158 Sum_probs=67.6
Q ss_pred hCCCcEEEEecChhhH--HHHHHHHHH-cCCccccccccCCccchHHHhhcc-CCcEEEEeCCCCC----chhhhHhhhc
Q psy16262 69 EHPADVFVISSRPIGQ--RAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFR-EPRLLVVTDPHTD----HQPITEAAYV 140 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~~--~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~-~P~lvii~dp~~d----~~aI~Ea~~l 140 (222)
.+.++|.|++...... ...+.+.++ .|..... ..++.+... ..... +.|++|++...-+ ..+++.|+..
T Consensus 32 ~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~--~~~se~~~~-~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 108 (352)
T 3g68_A 32 TNLKKIIITGSGTSYHSGVQVQPYLQNLLDIDVVK--MYPFMITED-TFKFDNENTLVVGVSQGGSSYSTYNAMKLAEDK 108 (352)
T ss_dssp SCCSEEEEECSHHHHHHHHHHHHHHHHHCSSEEEE--ECGGGCCGG-GGSSCCTTEEEEEEESSSCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEEEeehHHHHHHHHHHHHHHHhCCcEEE--Ecchhhhhc-ccCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHC
Confidence 3567899998886432 222333333 4543211 122333211 12233 6788888875444 5688999999
Q ss_pred CCCEEEEecC-CCCCC-cceEEccCCC---------CCchhHHHHHHHHHHHHHhhhCCCC
Q psy16262 141 NIPVIAFCNT-ESPLR-FVDIAIPCNN---------KSPHSIGLMWWLLAREVLRFRGVIG 190 (222)
Q Consensus 141 ~IP~IalvDT-d~~~~-~IdypIP~Nd---------ds~~si~li~~lL~~ai~~~~g~~~ 190 (222)
|.++|+|++. ++.+. ..|+.++... ++..+--+.+.+|+-.+.+.+|.++
T Consensus 109 ga~~iaIT~~~~S~La~~aD~~l~~~~g~E~~va~tksf~~ql~~l~~La~~l~~~~g~~~ 169 (352)
T 3g68_A 109 GCKIASMAGCKNALIDEISDYILTVNCGEEKSGAKTKGYYCTKLNLMLLGLQIAREKGIIS 169 (352)
T ss_dssp TCEEEEEESSTTCGGGGGCSEECCCCCCCCCCSSCSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCEEEEeCCCCChHHHhCCEEEEeCCCCCccccccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999976 44333 3566665432 2222223455667777777777655
No 29
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=81.74 E-value=8.8 Score=31.48 Aligned_cols=94 Identities=11% Similarity=0.173 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHcCCcc-ccccccCCcc--------c---------hHH--Hh
Q psy16262 56 EKLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYTGATP-IAGRFTPGAF--------T---------NQI--QA 114 (222)
Q Consensus 56 ~~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~y-v~~rW~gG~L--------T---------N~i--~~ 114 (222)
+.+.+++..+.. +.+.++|.++++..... +...++.+.+..- +.-...++.. | ... ..
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~-~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~ 104 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM-IAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLH 104 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH-HHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHH-HHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHh
Confidence 445667777664 67788999999886543 3333332222110 0000011111 1 001 11
Q ss_pred hccCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecC
Q psy16262 115 AFREPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNT 150 (222)
Q Consensus 115 ~~~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDT 150 (222)
...+=|++|++...-+ ..+++.|++.|.|||+|.+.
T Consensus 105 ~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~ 144 (243)
T 3cvj_A 105 QVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSM 144 (243)
T ss_dssp TCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECH
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 2456688888875444 56788899999999999986
No 30
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=80.19 E-value=7.2 Score=31.32 Aligned_cols=85 Identities=6% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHHHHHHHHH-hhCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCC-CCCc---
Q psy16262 57 KLLLAARAIVA-IEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDP-HTDH--- 131 (222)
Q Consensus 57 ~L~~a~~~i~~-i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp-~~d~--- 131 (222)
.+.+|++.+.. +.++|.|-+.++..-.- +..++.-+.+-..-.++|.. ....+.=|.++++.+ ..|.
T Consensus 23 ~I~~AA~llaqai~~~g~IyvfG~Ghs~~-~~~e~~~~~e~l~~~~~~~~-------~~~i~~~D~vii~S~Sg~n~~~i 94 (170)
T 3jx9_A 23 ELFDVVRLLAQALVGQGKVYLDAYGEFEG-LYPMLSDGPDQMKRVTKIKD-------HKTLHAVDRVLIFTPDTERSDLL 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECGGGGG-GTHHHHTSTTCCTTEEECCT-------TCCCCTTCEEEEEESCSCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcHHH-HHHHHHcccCCccchhhhhh-------cCCCCCCCEEEEEeCCCCCHHHH
Confidence 67889998884 78899998888776431 11122112222222234432 124567788888764 3443
Q ss_pred hhhhHhhhcCCCEEEEec
Q psy16262 132 QPITEAAYVNIPVIAFCN 149 (222)
Q Consensus 132 ~aI~Ea~~l~IP~IalvD 149 (222)
....+|+..|+|+|+++.
T Consensus 95 e~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 95 ASLARYDAWHTPYSIITL 112 (170)
T ss_dssp HHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHHCCCcEEEEeC
Confidence 455778889999999999
No 31
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=78.07 E-value=5.6 Score=32.68 Aligned_cols=58 Identities=5% Similarity=-0.125 Sum_probs=39.7
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
+.+|.||+.....+...++++...+||+|. +|++.+...+++.-. |...+.......|
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V~~---D~~~~g~~a~~~L 122 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVT-HGRSDMGIEHAFHDF---DNEAYAYEAVERL 122 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEE-ESCCCSSCCCEEEEE---CHHHHHHHHHHHH
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEE-ECCcCCCCCCcEEEe---CcHHHHHHHHHHH
Confidence 689999999877677889999999999985 566554444566543 3344444444444
No 32
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=75.92 E-value=12 Score=32.58 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=33.7
Q ss_pred cCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCC-C-cceEEccC
Q psy16262 117 REPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPL-R-FVDIAIPC 163 (222)
Q Consensus 117 ~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~-~-~IdypIP~ 163 (222)
.+.|++|++...-+ ..+++.|+..|.++|+|++...++ . ..|+.|+.
T Consensus 73 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~ 125 (329)
T 3eua_A 73 GEKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQY 125 (329)
T ss_dssp STTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEEC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEe
Confidence 46788888875444 568899999999999999875443 2 35665543
No 33
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=75.84 E-value=14 Score=32.31 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCcccc------ccccCCccchHHHhhccCCcEEEEeCCCC
Q psy16262 56 EKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIA------GRFTPGAFTNQIQAAFREPRLLVVTDPHT 129 (222)
Q Consensus 56 ~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~------~rW~gG~LTN~i~~~~~~P~lvii~dp~~ 129 (222)
..|.+|+..+..-..+-++++++..+...+.+++.++..|..+.. .-+++|. +.-+...+..-|++++.....
T Consensus 210 ~~ll~A~~~l~~~~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~-~~dl~~~y~~aDv~vl~ss~~ 288 (374)
T 2xci_A 210 EIILKAFKEIKKTYSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDR-FGILKELYPVGKIAIVGGTFV 288 (374)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCS-SSCHHHHGGGEEEEEECSSSS
T ss_pred HHHHHHHHHHHhhCCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECC-HHHHHHHHHhCCEEEECCccc
Confidence 345555544432112356788887776544567777777765321 1233443 233455667788877754332
Q ss_pred C--chhhhHhhhcCCCEEE
Q psy16262 130 D--HQPITEAAYVNIPVIA 146 (222)
Q Consensus 130 d--~~aI~Ea~~l~IP~Ia 146 (222)
+ -..+-||...|.|+|+
T Consensus 289 e~gg~~~lEAmA~G~PVI~ 307 (374)
T 2xci_A 289 NIGGHNLLEPTCWGIPVIY 307 (374)
T ss_dssp SSCCCCCHHHHTTTCCEEE
T ss_pred CCCCcCHHHHHHhCCCEEE
Confidence 3 3779999999999996
No 34
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=74.02 E-value=31 Score=28.07 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=38.4
Q ss_pred ccCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCCC-cceEEccCCCCCchhHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLR-FVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 116 ~~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~~-~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
.+.+|.||+.....+ ...++++...+||+|.+ |++.+.. .+++.-+ |...+.......|.+
T Consensus 59 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 122 (305)
T 3g1w_A 59 AKNPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLGT---NNYNAGMNAAYKMAE 122 (305)
T ss_dssp HHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEEC---CHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCceeEEECc---CHHHHHHHHHHHHHH
Confidence 357999998864443 56899999999999875 5544432 3556553 334454544444433
No 35
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=72.71 E-value=8.7 Score=31.67 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=40.8
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
+.+|.||+.....+...++++...+||+|.+ |.+.+...+++.-. |...+.......|.
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~ 122 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFDF---DNHAGASLAVKRLL 122 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEEE---CHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEEc---ChHHHHHHHHHHHH
Confidence 5899999998776678899999999999865 55544445666553 44455555555443
No 36
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=69.74 E-value=8.3 Score=31.53 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=40.9
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+...++++...+||+|.+ |++.+...+++.-. |...+.......|.
T Consensus 62 ~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 121 (291)
T 3egc_A 62 ERRVDGLILAPSEGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVLS---ENVRGARTAVEYLI 121 (291)
T ss_dssp HTTCSEEEECCCSSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEEE---CHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCCCChHHHHHhhccCCCEEEE-ecccCCCCCCEEEE---CcHHHHHHHHHHHH
Confidence 36799999988766788899999999999965 55554444566553 34455454444443
No 37
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=69.63 E-value=11 Score=31.12 Aligned_cols=59 Identities=5% Similarity=-0.104 Sum_probs=40.4
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+...++++...+||+|.+ |++.+...+++.-. |...+.......|
T Consensus 81 ~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L 139 (305)
T 3huu_A 81 SKSVDGFILLYSLKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHIDN---DNIDAAYQLTQYL 139 (305)
T ss_dssp TTCCSEEEESSCBTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEEC---CHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCcCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEEe---CHHHHHHHHHHHH
Confidence 36899999987766678889999999999865 55554444666553 4445555444444
No 38
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=69.35 E-value=12 Score=30.64 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=38.1
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
.+.+|.||+.....+...++++...+||+|.+ |+..+...+++.-. |...+.......|.+
T Consensus 62 ~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 122 (287)
T 3bbl_A 62 SGNVDGFVLSSINYNDPRVQFLLKQKFPFVAF-GRSNPDWDFAWVDI---DGTAGTRQAVEYLIG 122 (287)
T ss_dssp TTCCSEEEECSCCTTCHHHHHHHHTTCCEEEE-SCCSTTCCCCEEEE---CHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeecCCCcHHHHHHHhcCCCEEEE-CCcCCCCCCCEEEe---ccHHHHHHHHHHHHH
Confidence 36799999987655557788888899999976 55433223444432 344444544444443
No 39
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=68.15 E-value=13 Score=30.29 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=40.8
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCC-cceEEccCCCCCchhHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLR-FVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~-~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
.+.+|.||+.....+...++++...+||+|.+ |++.+.. .+++.-. |...+.......|.+
T Consensus 67 ~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 128 (292)
T 3k4h_A 67 GRQIGGIILLYSRENDRIIQYLHEQNFPFVLI-GKPYDRKDEITYVDN---DNYTAAREVAEYLIS 128 (292)
T ss_dssp TTCCCEEEESCCBTTCHHHHHHHHTTCCEEEE-SCCSSCTTTSCEEEC---CHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCChHHHHHHHHCCCCEEEE-CCCCCCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 36899999988776778899999999999875 5554433 2566553 344554544444433
No 40
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=68.08 E-value=13 Score=30.44 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=37.4
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
+.+|.||+.....+...++++...+||+|.+ |+..+...+++.- .|...+.......|.
T Consensus 71 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~---~D~~~~g~~a~~~L~ 129 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLA-ASVEEQEETPSVA---IDYEQAIYDAVKLLV 129 (289)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEE-SCCCTTCCSCEEE---CCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCEEEE-ccccCCCCCCEEE---ECcHHHHHHHHHHHH
Confidence 5789999887655566788888899999986 5543323345544 234445454444443
No 41
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.04 E-value=11 Score=30.58 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=39.7
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+..... ...++++...+||+|.+ |++.+...+++.-. |...+.......|
T Consensus 61 ~~~vdgiIi~~~~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L 118 (276)
T 3jy6_A 61 SRGFDGLILQSFSN-PQTVQEILHQQMPVVSV-DREMDACPWPQVVT---DNFEAAKAATTAF 118 (276)
T ss_dssp TTTCSEEEEESSCC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEEC---CHHHHHHHHHHHH
T ss_pred hCCCCEEEEecCCc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEEE---ChHHHHHHHHHHH
Confidence 36799999998766 77888899899999976 55544444666553 4445555554444
No 42
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=67.24 E-value=14 Score=30.32 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=38.6
Q ss_pred ccCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCC----CcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPL----RFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~----~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+ ..+++++...|||+|.+ |++.+. ..+++.-+ |...+.......|.
T Consensus 59 ~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~ 124 (297)
T 3rot_A 59 ATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAV-DTRPKDKTKNPYLVFLGS---DNLLAGKKLGEKAL 124 (297)
T ss_dssp HTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEE-SCCCSCTTTSCCSCEEEC---CHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEE-cCCCccccccCcceEEcc---ChHHHHHHHHHHHH
Confidence 357999998866555 67899999999999976 544433 33555543 33444444444443
No 43
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=66.29 E-value=11 Score=30.41 Aligned_cols=59 Identities=12% Similarity=-0.108 Sum_probs=37.2
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.+|+.....+...++++...+||+|.+ |+..+...+++.-. |...+.......|
T Consensus 57 ~~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L 115 (275)
T 3d8u_A 57 ESRPAGVVLFGSEHSQRTHQLLEASNTPVLEI-AELSSKASYLNIGV---DHFEVGKACTRHL 115 (275)
T ss_dssp TSCCCCEEEESSCCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEECB---CHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEEEE---ChHHHHHHHHHHH
Confidence 35789999887665667788888899999986 55443334554432 3334444444433
No 44
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=65.99 E-value=14 Score=30.28 Aligned_cols=59 Identities=12% Similarity=-0.047 Sum_probs=37.9
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
+.+|.||+.....+...++++...+||+|.+ |+..+...+++.- .|...+.......|.
T Consensus 66 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~---~D~~~~g~~a~~~L~ 124 (290)
T 2rgy_A 66 RDCDGVVVISHDLHDEDLDELHRMHPKMVFL-NRAFDALPDASFC---PDHRRGGELAAATLI 124 (290)
T ss_dssp TTCSEEEECCSSSCHHHHHHHHHHCSSEEEE-SSCCTTSGGGEEC---CCHHHHHHHHHHHHH
T ss_pred cCccEEEEecCCCCHHHHHHHhhcCCCEEEE-ccccCCCCCCEEE---eCcHHHHHHHHHHHH
Confidence 5799999887655566788888889999976 5544333355544 344455555444443
No 45
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=65.81 E-value=10 Score=32.35 Aligned_cols=61 Identities=10% Similarity=0.026 Sum_probs=42.1
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
.+.+|.||+.....+...++++...+||+|.+ |...+...+++.-. |...+.......|.+
T Consensus 126 ~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 186 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAP---NNRKAIAPAAQALID 186 (366)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEE---CHHHHTHHHHHHHHH
T ss_pred hCCCCEEEEecCCCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 36799999998766778889999999999965 76554445666553 444555555554443
No 46
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=65.60 E-value=13 Score=30.53 Aligned_cols=60 Identities=7% Similarity=-0.064 Sum_probs=39.4
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCC--cceEEccCCCCCchhHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLR--FVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~--~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
+.+|.||+.....+...++++...+||+|.+ |.+.+.. .+++.- .|...+.......|.+
T Consensus 67 ~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~~~V~---~D~~~~~~~a~~~L~~ 128 (295)
T 3hcw_A 67 RMVDAFILLYSKENDPIKQMLIDESMPFIVI-GKPTSDIDHQFTHID---NDNILASENLTRHVIE 128 (295)
T ss_dssp TCCSEEEESCCCTTCHHHHHHHHTTCCEEEE-SCCCSSGGGGSCEEE---ECHHHHHHHHHHHHHH
T ss_pred CCcCEEEEcCcccChHHHHHHHhCCCCEEEE-CCCCccccCCceEEe---cCcHHHHHHHHHHHHH
Confidence 6799999987766677888899999999865 5544433 344443 2444555555554433
No 47
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=65.13 E-value=15 Score=32.32 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=45.7
Q ss_pred ccCCcEEEEeCCCCC----chhhhHhhhcC-CCEEEEecCCCCC-C-cceEE--ccCCCC-------CchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD----HQPITEAAYVN-IPVIAFCNTESPL-R-FVDIA--IPCNNK-------SPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d----~~aI~Ea~~l~-IP~IalvDTd~~~-~-~Idyp--IP~Ndd-------s~~si~li~~lL~ 179 (222)
....|++|++...-+ ..++++|++.| .++|+|++...++ . ..|+. +|+..+ |..+.-+++.+|+
T Consensus 97 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e~~~a~t~s~~~~l~~l~~L~ 176 (368)
T 1moq_A 97 VRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLV 176 (368)
T ss_dssp CCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCeecccchhhHHHHHHHHHHHH
Confidence 356788888875444 56788999999 9999999875433 1 24444 444332 2334445556666
Q ss_pred HHHHhhhC
Q psy16262 180 REVLRFRG 187 (222)
Q Consensus 180 ~ai~~~~g 187 (222)
-.+...+|
T Consensus 177 ~~l~~~~~ 184 (368)
T 1moq_A 177 AKLSRLKG 184 (368)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 66666665
No 48
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=64.88 E-value=12 Score=30.68 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=39.7
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
.+.+|.||+.....+...++++.. +||+|.+ |...+...+++.-. |...+.......|.+
T Consensus 64 ~~~vdgiIi~~~~~~~~~~~~~~~-~iPvV~i-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 123 (289)
T 3k9c_A 64 RERCEAAILLGTRFDTDELGALAD-RVPALVV-ARASGLPGVGAVRG---DDVAGITLAVDHLTE 123 (289)
T ss_dssp TTTEEEEEEETCCCCHHHHHHHHT-TSCEEEE-SSCCSSTTSEEEEE---CHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCHHHHHHHHc-CCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 367999999987777778888877 9999965 65554444666553 344555555444433
No 49
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=63.84 E-value=18 Score=29.17 Aligned_cols=59 Identities=7% Similarity=-0.097 Sum_probs=37.3
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhh-cCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAY-VNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~-l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+...++++.. .+||+|.+ |+..+...+++.- .|...+.......|
T Consensus 75 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~V~---~d~~~~~~~a~~~l 134 (296)
T 3brq_A 75 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSVW---CDHKQTSFNAVAEL 134 (296)
T ss_dssp HTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEE-SCCCSSSGGGEEC---CCHHHHHHHHHHHH
T ss_pred hcCCCEEEEecCCCChHHHHHHHhcCCCCEEEE-ccccCCCCCCEEE---EchHHHHHHHHHHH
Confidence 357999999876555567888888 89999876 6554433455543 23344444444444
No 50
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=63.68 E-value=14 Score=29.59 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=38.2
Q ss_pred ccCCcEEEEeCCC-CCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPH-TDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~-~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.+|+.... .+...++++...+||+|.+ |+..+...+++.-. |...+.......|
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L 115 (272)
T 3o74_A 56 ARRCDALFVASCLPPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVIS---DDRDASRQLAASL 115 (272)
T ss_dssp HTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEEE---CHHHHHHHHHHHH
T ss_pred HcCCCEEEEecCccccHHHHHHHHHcCCCEEEE-ccCCCccccCEEEE---chHHHHHHHHHHH
Confidence 3579999988654 3467888999999999865 65554444666553 3344444444433
No 51
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=62.95 E-value=30 Score=30.14 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=51.1
Q ss_pred hCCCcEEEEecChhhH--HHHHHHHHH-cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcC
Q psy16262 69 EHPADVFVISSRPIGQ--RAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVN 141 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~~--~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~ 141 (222)
.+.++|.|++...... ...+.+..+ .|..... ..+...+........+.|++|++...-+ ..+++.|+..|
T Consensus 41 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G 118 (344)
T 3fj1_A 41 RDPSFVATVARGSSDHVCTYLSYAAELLLGLPVAS--LGPSVASVYDARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDG 118 (344)
T ss_dssp HCCSEEEEECCTHHHHHHHHHHHHHHHHHCCCEEE--CCTHHHHTTCCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--ecchHHhhhcccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCC
Confidence 4668899999887532 222333333 4544221 0001011010122356788888865444 57889999999
Q ss_pred CCEEEEecCC-CCCC-cceEEcc
Q psy16262 142 IPVIAFCNTE-SPLR-FVDIAIP 162 (222)
Q Consensus 142 IP~IalvDTd-~~~~-~IdypIP 162 (222)
.++|+|++.. +.+. ..|+.|+
T Consensus 119 a~~iaIT~~~~S~La~~ad~~l~ 141 (344)
T 3fj1_A 119 ALCVALTNDAASPLAGVSAHTID 141 (344)
T ss_dssp CEEEEEESCTTSHHHHTSSEEEE
T ss_pred CcEEEEECCCCChHHHhcCEeee
Confidence 9999999764 3332 2454444
No 52
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=62.77 E-value=6.2 Score=34.99 Aligned_cols=115 Identities=8% Similarity=-0.068 Sum_probs=58.7
Q ss_pred CCCcEEEEecChhh--HHHHHHHHHHc-CCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcCC
Q psy16262 70 HPADVFVISSRPIG--QRAVLKFASYT-GATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVNI 142 (222)
Q Consensus 70 ~~~~ILfv~t~~~~--~~~v~~~a~~~-g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~I 142 (222)
+.++|.|+++.... ....+.+..+. +..... ..+.-+. ........=|++|++...-+ ..++++|+..|.
T Consensus 59 ~~~~I~i~G~G~S~~a~~~a~~~~~~l~~~~~~~--~~~~d~~-~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga 135 (375)
T 2zj3_A 59 RCRRLILIACGTSYHAGVATRQVLEELTELPVMV--ELASDFL-DRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGA 135 (375)
T ss_dssp HCSEEEEEECHHHHHHHHHHHHHHHHHHCSCEEE--EEHHHHH-HTTCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEecHHHHHHHHHHHHHHHHhCCCeEE--EeechHh-hhccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCC
Confidence 45789999888652 22333333332 322111 0011110 00112244567777765444 568899999999
Q ss_pred CEEEEecCCCCC-C-cceEEc--cCC-CCC------chhHHHHHHHHHHHHHhhhC
Q psy16262 143 PVIAFCNTESPL-R-FVDIAI--PCN-NKS------PHSIGLMWWLLAREVLRFRG 187 (222)
Q Consensus 143 P~IalvDTd~~~-~-~IdypI--P~N-dds------~~si~li~~lL~~ai~~~~g 187 (222)
++|+|++...++ . ..|+.| |+. ..+ ..+.-+++.+|+-.+...+|
T Consensus 136 ~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~a~t~s~ta~l~~l~~L~~~l~~~~~ 191 (375)
T 2zj3_A 136 LTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRI 191 (375)
T ss_dssp EEEEEESCTTCHHHHHSSEEEECCCCCCCCSSCSHHHHHHHHHHHHHHHHHTTTCG
T ss_pred cEEEEECCCCChHHHhCCEeeeecCCcccchhhhhhHHHHHHHHHHHHHHHHHHcC
Confidence 999999975433 2 244444 432 212 22333445555555544444
No 53
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=62.75 E-value=20 Score=29.07 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=40.5
Q ss_pred ccCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCC-CcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~-~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
.+.+|.||+.....+. .+++++...+||+|.+ |++.+. ..+++.-+ |...+.......|.+
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~~~~~l~~ 125 (293)
T 3l6u_A 62 HLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAI-DRMIRSDAVVSSITS---NNQMIGEQLASYIKN 125 (293)
T ss_dssp HTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEE-SSCCCCTTCSEEEEE---CHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEe-cCCCCCCcceeEEec---CHHHHHHHHHHHHHH
Confidence 3679999998765554 7789999999999887 544433 34566553 444555555555554
No 54
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=62.18 E-value=13 Score=30.22 Aligned_cols=58 Identities=7% Similarity=-0.034 Sum_probs=37.2
Q ss_pred CCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 118 EPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 118 ~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+|.||+.....+...++++...+||+|.+ |+..+...+++.-. |...+.......|.
T Consensus 57 ~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~ 114 (277)
T 3cs3_A 57 MVDGAIILDWTFPTKEIEKFAERGHSIVVL-DRTTEHRNIRQVLL---DNRGGATQAIEQFV 114 (277)
T ss_dssp TCSEEEEECTTSCHHHHHHHHHTTCEEEES-SSCCCSTTEEEEEE---CHHHHHHHHHHHHH
T ss_pred cccEEEEecCCCCHHHHHHHHhcCCCEEEE-ecCCCCCCCCEEEe---CcHHHHHHHHHHHH
Confidence 799999987665667788888899999976 55443333444442 33444454444443
No 55
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=60.74 E-value=13 Score=32.29 Aligned_cols=96 Identities=10% Similarity=0.035 Sum_probs=50.3
Q ss_pred hhCCCcEEEEecChhhH--HHHHHHHHH-cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhc
Q psy16262 68 IEHPADVFVISSRPIGQ--RAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYV 140 (222)
Q Consensus 68 i~~~~~ILfv~t~~~~~--~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l 140 (222)
+.+.++|.|+++..... ........+ .|..... ..+..+..........||++|++...-+ ..++++|++.
T Consensus 49 l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~--~~~~~~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ 126 (342)
T 1j5x_A 49 KNLTDEVLFVGCGSSYNLALTISYYFERVLKIRTKA--IPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKR 126 (342)
T ss_dssp ---CCEEEEEESTHHHHHHHHHHHHHHHHHCCEEEE--EEHHHHHTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHHT
T ss_pred hCCCCEEEEEEchHHHHHHHHHHHHHHHhhCCeEEE--ECchHHHhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHHC
Confidence 34567899999886432 122222222 4543211 0111110000011223588888876554 5688899999
Q ss_pred CCCEEEEecCCCCC-C---cceEEccCCC
Q psy16262 141 NIPVIAFCNTESPL-R---FVDIAIPCNN 165 (222)
Q Consensus 141 ~IP~IalvDTd~~~-~---~IdypIP~Nd 165 (222)
|.++|+|++...++ . ...+.+|++.
T Consensus 127 Ga~vIaIT~~~~S~La~~ad~~l~~~~~e 155 (342)
T 1j5x_A 127 NHRTIGITIEEESRLAKESDLPLVFPVRE 155 (342)
T ss_dssp TEEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CCCEEEEECCCCCHHHHhcCEEEEcCCCc
Confidence 99999999875433 1 2344555543
No 56
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=59.96 E-value=20 Score=29.60 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=38.7
Q ss_pred ccCCcEEEEeCCCCCch-hhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQ-PITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~-aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+.. .++++.. +||+|.+ |++.+. .+++.-. |...+.......|.
T Consensus 69 ~~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i-~~~~~~-~~~~V~~---D~~~~g~~a~~~L~ 127 (303)
T 3kke_A 69 EGRVDGVLLQRREDFDDDMLAAVLE-GVPAVTI-NSRVPG-RVGSVIL---DDQKGGGIATEHLI 127 (303)
T ss_dssp SCSSSEEEECCCTTCCHHHHHHHHT-TSCEEEE-SCCCTT-CCCEEEE---CHHHHHHHHHHHHH
T ss_pred hCCCcEEEEecCCCCcHHHHHHHhC-CCCEEEE-CCcCCC-CCCEEEE---CcHHHHHHHHHHHH
Confidence 46799999988766666 8888888 9999865 555544 5666553 34445454444443
No 57
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=59.55 E-value=26 Score=29.47 Aligned_cols=60 Identities=8% Similarity=0.016 Sum_probs=40.2
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+...++++...+||+|.+-|...++. ..+.- .|...+.......|.
T Consensus 122 ~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~-~~~V~---~D~~~~~~~a~~~L~ 181 (344)
T 3kjx_A 122 SWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGKPV-DAMVG---ISHRRAGREMAQAIL 181 (344)
T ss_dssp TTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSCCS-SEEEE---ECHHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCCCC-CCEEE---ECcHHHHHHHHHHHH
Confidence 3679999999877777788889999999999977554432 33333 244455454444443
No 58
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=58.77 E-value=24 Score=31.01 Aligned_cols=117 Identities=8% Similarity=-0.063 Sum_probs=60.2
Q ss_pred hCCCcEEEEecChhh--HHHHHHHHHH-cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcC
Q psy16262 69 EHPADVFVISSRPIG--QRAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVN 141 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~--~~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~ 141 (222)
.+.++|.|+++.... ....+.+..+ .+..... ..++-+.. .......=|++|++...-+ ..+++.|+..|
T Consensus 48 ~~~~~I~i~G~G~S~~~~~~a~~~~~~l~~~~~~~--~~~~e~~~-~~~~~~~~dlvI~iS~SG~T~e~l~a~~~Ak~~G 124 (367)
T 2poc_A 48 RRCRRIIMIACGTSYHSCLATRSIFEELTEIPVSV--ELASDFLD-RRSPVFRDDTCVFVSQSGETADSILALQYCLERG 124 (367)
T ss_dssp HTSSEEEEEECHHHHHHHHHHHHHHHHHHCSCEEE--EEHHHHHH-TTCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred hCCCEEEEEEecHHHHHHHHHHHHHHHHhCCCeEE--EehhhhHh-hccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCC
Confidence 456789999887652 1223333333 2322111 00111100 0112234567777765444 56889999999
Q ss_pred CCEEEEecCCCCC-C-cceEEccCC---CCCc------hhHHHHHHHHHHHHHhhhCC
Q psy16262 142 IPVIAFCNTESPL-R-FVDIAIPCN---NKSP------HSIGLMWWLLAREVLRFRGV 188 (222)
Q Consensus 142 IP~IalvDTd~~~-~-~IdypIP~N---dds~------~si~li~~lL~~ai~~~~g~ 188 (222)
.++|+|++...++ . ..|+.|+.. ..+. .+--..+.+|+-.+...+|.
T Consensus 125 a~~iaIT~~~~S~La~~ad~~l~~~~g~E~~~a~t~s~t~~l~~l~~L~~~l~~~~~~ 182 (367)
T 2poc_A 125 ALTVGIVNSVGSSMSRQTHCGVHINAGPEIGVASTKAYTSQYIALVMFALSLSNDSIS 182 (367)
T ss_dssp CEEEEEESSTTSHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHTTTBST
T ss_pred CCEEEEECCCCChHHHhCCEEEEcCCCCcccccccHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999975433 2 244444333 2222 23344455566666554444
No 59
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=57.75 E-value=21 Score=28.95 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=38.4
Q ss_pred ccCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCCC-cceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLR-FVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~~-~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+ ..+++++...+||+|.+ |++.+.. ..++.-+ |...+.......|.
T Consensus 67 ~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~ 129 (304)
T 3gbv_A 67 EEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFGQ---NSHQSGYFAARMLM 129 (304)
T ss_dssp TTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEEC---CHHHHHHHHHHHHH
T ss_pred hcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEE-eCCCCCCCceEEEec---ChHHHHHHHHHHHH
Confidence 468999999876543 56789999999999865 5544332 3566553 33444444444443
No 60
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=56.98 E-value=37 Score=29.51 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=51.2
Q ss_pred hCCCcEEEEecChhh---HHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcC
Q psy16262 69 EHPADVFVISSRPIG---QRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVN 141 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~---~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~ 141 (222)
.+.++|.|++..... ..+-..+.+..|..... ..+...+........+.|++|++...-+ ..+++.|++.|
T Consensus 40 ~~~~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~--~~~~~~~~~~~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g 117 (334)
T 3hba_A 40 FKPKFVMIVGRGSSDHAGVFAKYLFEIEASIPTFA--AAPSVASVYGKTLKLAGGLVIVISQSGRSPDILAQARMAKNAG 117 (334)
T ss_dssp HCCSCEEEESSGGGCHHHHHHHHHHHHHHCCCEEE--CCHHHHHTSCCCCCCTTCEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHHHHhCCcEEE--EcchHHHHhcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 566889998887643 22222333335654221 0000000010112346778888865444 57889999999
Q ss_pred CCEEEEecC-CCCCC-cceEEccC
Q psy16262 142 IPVIAFCNT-ESPLR-FVDIAIPC 163 (222)
Q Consensus 142 IP~IalvDT-d~~~~-~IdypIP~ 163 (222)
.++|+|++. ++... ..|+.|+.
T Consensus 118 ~~~i~IT~~~~S~la~~ad~~l~~ 141 (334)
T 3hba_A 118 AFCVALVNDETAPIKDIVDVVIPL 141 (334)
T ss_dssp CEEEEEESCTTSGGGGTSSEEEEC
T ss_pred CcEEEEeCCCCChHHHhcCEeeee
Confidence 999999986 44333 34554443
No 61
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=56.27 E-value=18 Score=29.56 Aligned_cols=58 Identities=7% Similarity=-0.127 Sum_probs=31.1
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+...++++...+||+|.+ |+..+.. +++.- .|...+.......|
T Consensus 63 ~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~-~~~V~---~D~~~~g~~a~~~L 120 (290)
T 3clk_A 63 ERPVMGILLLSIALTDDNLQLLQSSDVPYCFL-SMGFDDD-RPFIS---SDDEDIGYQATNLL 120 (290)
T ss_dssp SSCCSEEEEESCC----CHHHHHCC--CEEEE-SCC--CC-SCEEE---CCHHHHHHHHHHHH
T ss_pred hcCCCEEEEecccCCHHHHHHHHhCCCCEEEE-cCCCCCC-CCEEE---eChHHHHHHHHHHH
Confidence 36799999987655556788888889999876 5543322 44433 23344444444433
No 62
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=55.95 E-value=32 Score=28.36 Aligned_cols=60 Identities=13% Similarity=0.094 Sum_probs=36.8
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCC-CcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~-~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
+.+|.||+.....+. .+++++...+||+|.+ |++.+. ..+++.- .|...+.......|.+
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~---~d~~~~g~~a~~~L~~ 118 (313)
T 2h3h_A 56 EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTL-DTDSPDSGRYVYIG---TDNYQAGYTAGLIMKE 118 (313)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEE---CCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEEC---cCHHHHHHHHHHHHHH
Confidence 579999887654433 5788888899999976 554332 2355544 2334444544444443
No 63
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=55.03 E-value=20 Score=31.39 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEEecChhhH--HHHHHHHHH-c-CCccccccccCCccchHHHhhccCCcEEEEeCCCCC--
Q psy16262 57 KLLLAARAIVAIEHPADVFVISSRPIGQ--RAVLKFASY-T-GATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD-- 130 (222)
Q Consensus 57 ~L~~a~~~i~~i~~~~~ILfv~t~~~~~--~~v~~~a~~-~-g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d-- 130 (222)
.+.+++..+..-.+.++|.|+++..... ...+....+ . |..... ..++-+.........+.|++|++...-+
T Consensus 26 ~i~~~~~~i~~~~~a~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~--~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~ 103 (347)
T 3fkj_A 26 NARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGY--ITSNEFVHATPKALGKNSVVILASQQGNTA 103 (347)
T ss_dssp HHHHHHHHHHTTSCCCEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEE--EEHHHHHHSCCTTCSTTEEEEEEESSSCCH
T ss_pred HHHHHHHHHHhhCCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEE--eCcHHHHhhCcCCCCCCCEEEEEeCCCCcH
Confidence 3445555443112567899999886431 222222222 2 333111 1111110000112346788888875444
Q ss_pred --chhhhHhhhcCCCEEEEecCCCCC-C-cceEEcc
Q psy16262 131 --HQPITEAAYVNIPVIAFCNTESPL-R-FVDIAIP 162 (222)
Q Consensus 131 --~~aI~Ea~~l~IP~IalvDTd~~~-~-~IdypIP 162 (222)
..+++.|+..|.++|+|++...++ . ..|+.|+
T Consensus 104 e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~ 139 (347)
T 3fkj_A 104 ETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIE 139 (347)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEE
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEE
Confidence 568899999999999999864443 2 3455543
No 64
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=55.02 E-value=65 Score=24.23 Aligned_cols=72 Identities=8% Similarity=0.047 Sum_probs=47.2
Q ss_pred CcEEEEecChh-hHHHHHHHHHHcCCccccccccCCccch-HHHhhccCCcEEEEeCCCCC-chhhhHhhhcCCCEEEE
Q psy16262 72 ADVFVISSRPI-GQRAVLKFASYTGATPIAGRFTPGAFTN-QIQAAFREPRLLVVTDPHTD-HQPITEAAYVNIPVIAF 147 (222)
Q Consensus 72 ~~ILfv~t~~~-~~~~v~~~a~~~g~~yv~~rW~gG~LTN-~i~~~~~~P~lvii~dp~~d-~~aI~Ea~~l~IP~Ial 147 (222)
-++++++..+. ..+.+++.++..+ +=+|+-|.+.. .+...+..-|+++.....+. ...+-||...|.|+|+-
T Consensus 71 ~~l~i~G~~~~~~~~~l~~~~~~~~----~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~ 145 (200)
T 2bfw_A 71 MRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIAS 145 (200)
T ss_dssp EEEEEECCBCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEE
T ss_pred eEEEEECCCChHHHHHHHHHHHhcC----CEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEe
Confidence 45677776551 3345666777766 22352466664 35566778888877653322 57899999999999986
No 65
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=54.73 E-value=22 Score=28.89 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=35.3
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+...++++. .+||+|.+ |+..+...+++.- .|...+.......|
T Consensus 62 ~~~vdgiI~~~~~~~~~~~~~l~-~~iPvV~~-~~~~~~~~~~~V~---~D~~~~g~~a~~~L 119 (285)
T 3c3k_A 62 GKMVDGVITMDALSELPELQNII-GAFPWVQC-AEYDPLSTVSSVS---IDDVAASEYVVDQL 119 (285)
T ss_dssp TTCCSEEEECCCGGGHHHHHHHH-TTSSEEEE-SSCCTTSSSCEEE---CCHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCChHHHHHHh-cCCCEEEE-ccccCCCCCCEEE---EChHHHHHHHHHHH
Confidence 35799999876544445677777 89999987 5544333355544 24444444444444
No 66
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=54.66 E-value=76 Score=26.91 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEecChhh-----HHHHHHHHHHcCCcccc-----ccccCCccchH-HHhhccCCc
Q psy16262 52 RRTWEKLLLAARAIVAIEHPADVFVISSRPIG-----QRAVLKFASYTGATPIA-----GRFTPGAFTNQ-IQAAFREPR 120 (222)
Q Consensus 52 ~~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~-----~~~v~~~a~~~g~~yv~-----~rW~gG~LTN~-i~~~~~~P~ 120 (222)
.+=...|.+|+..+..-...-++++++..+.. .+.+++.++..|..--. --+..|.+... +...+..-|
T Consensus 196 ~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~ad 275 (413)
T 3oy2_A 196 RKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACD 275 (413)
T ss_dssp GGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCS
T ss_pred hcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCC
Confidence 34445566666655443334577888877542 35677777777754210 02446766643 445556678
Q ss_pred EEEEeCCC-CCchhhhHhhhcCCCEEE
Q psy16262 121 LLVVTDPH-TDHQPITEAAYVNIPVIA 146 (222)
Q Consensus 121 lvii~dp~-~d~~aI~Ea~~l~IP~Ia 146 (222)
++++..-. .--.++-||...|.|+|+
T Consensus 276 v~v~pS~~E~~~~~~lEAma~G~PvI~ 302 (413)
T 3oy2_A 276 VIVNCSSGEGFGLCSAEGAVLGKPLII 302 (413)
T ss_dssp EEEECCSCCSSCHHHHHHHTTTCCEEE
T ss_pred EEEeCCCcCCCCcHHHHHHHcCCCEEE
Confidence 77765431 125689999999999999
No 67
>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}
Probab=54.35 E-value=13 Score=32.94 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=0.0
Q ss_pred cCCcEEEEeCCCCC----chhhhHhhhcC-CCEEEEecCCCCCCc--ceEEccCCC---------CCchhHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTD----HQPITEAAYVN-IPVIAFCNTESPLRF--VDIAIPCNN---------KSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~P~lvii~dp~~d----~~aI~Ea~~l~-IP~IalvDTd~~~~~--IdypIP~Nd---------ds~~si~li~~lL~~ 180 (222)
.+.|++|++...-+ ..+++.|+..| .++|+|++...++-- .|+.|+... +|..+--+.+.+|+-
T Consensus 100 ~~~dlvI~iS~SG~T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~g~E~~~a~Tks~t~ql~~l~lL~~ 179 (372)
T 3tbf_A 100 VDGSLFVSISQSGETADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGVEIGVASTKAFTTQLVALAIFTL 179 (372)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCCCCCCBSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecCCccccchhhHHHHHHHHHHHHHHH
Q ss_pred HHHhhhCCCC
Q psy16262 181 EVLRFRGVIG 190 (222)
Q Consensus 181 ai~~~~g~~~ 190 (222)
.+.+.+|.++
T Consensus 180 ~l~~~~g~~~ 189 (372)
T 3tbf_A 180 VIAKLKNSLT 189 (372)
T ss_dssp HHHHHTTCSC
T ss_pred HHHHHcCCCC
No 68
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=53.89 E-value=31 Score=28.40 Aligned_cols=60 Identities=18% Similarity=0.068 Sum_probs=38.9
Q ss_pred ccCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCCCcce-EEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLRFVD-IAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~~~Id-ypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+ ...++++...|||+|.+ |++.+...++ +.-. |...+.......|.
T Consensus 56 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 118 (313)
T 3m9w_A 56 NRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAY-DRMINDADIDFYISF---DNEKVGELQAKALV 118 (313)
T ss_dssp HTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEE-SSCCTTSCCSEEEEE---CHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-CCcCCCCCceEEEec---CHHHHHHHHHHHHH
Confidence 367999999876555 47899999999999876 5554444453 4432 44455454444444
No 69
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=53.60 E-value=33 Score=29.03 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=39.2
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.+|+.....+...++++...+||+|.+-|...++. .++.- .|...+.......|
T Consensus 124 ~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~-~~~V~---~D~~~~~~~a~~~L 182 (355)
T 3e3m_A 124 RRRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPAHPI-GHTVG---FSNERAAYDMTNAL 182 (355)
T ss_dssp HTCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCCSSCS-SEEEE---CCHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCccCCCC-CCEEE---eChHHHHHHHHHHH
Confidence 3689999999877777888889999999999855443332 33433 23345545444444
No 70
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=53.55 E-value=28 Score=28.03 Aligned_cols=60 Identities=10% Similarity=-0.116 Sum_probs=38.0
Q ss_pred ccCCcEEEEeCCC-----CCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPH-----TDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~-----~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.... .+...++++...+||+|.+ |++.+...+++.-. |...+.......|.
T Consensus 69 ~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L~ 133 (298)
T 3tb6_A 69 SQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMI-NASYAELAAPSFTL---DDVKGGMMAAEHLL 133 (298)
T ss_dssp HTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEE-SSCCTTCSSCEEEE---CHHHHHHHHHHHHH
T ss_pred HCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEE-ecCcCCCCCCEEEe---CcHHHHHHHHHHHH
Confidence 3679999987643 3446788999999999976 55444334555443 33445444444443
No 71
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=53.31 E-value=32 Score=28.76 Aligned_cols=59 Identities=12% Similarity=-0.084 Sum_probs=36.9
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.+|+.....+...++++...+||+|.+ |+..+...+++.-+ |...+.......|
T Consensus 117 ~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L 175 (332)
T 2o20_A 117 SKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLV-GTIDGDKEIPSVNI---DYHLAAYQSTKKL 175 (332)
T ss_dssp HTTCSEEEECSSCCCHHHHHHHHHHCCCEEEE-SCCCTTSCSCEEEC---CHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEEEe---ChHHHHHHHHHHH
Confidence 36799999887655566788888889999976 55433333454432 3444444444444
No 72
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=52.62 E-value=32 Score=27.73 Aligned_cols=58 Identities=9% Similarity=0.053 Sum_probs=35.7
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCCC-cceEEccCCCCCchhHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPLR-FVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~~-~IdypIP~Ndds~~si~li~~lL 178 (222)
+.+|.||+.....+. ..++++...+||+|.+ |+..+.. .+++.-+ |...+.......|
T Consensus 64 ~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~~~~~L 124 (289)
T 3brs_A 64 RKPDVILLAAADYEKTYDAAKEIKDAGIKLIVI-DSGMKQDIADITVAT---DNIQAGIRIGAVT 124 (289)
T ss_dssp TCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE-SSCCSSCCCSEEEEC---CHHHHHHHHHHHH
T ss_pred hCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEE-CCCCCCCcceEEEee---ChHHHHHHHHHHH
Confidence 579999988765554 6688888889999976 5543322 2444432 3344444444444
No 73
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=52.41 E-value=39 Score=26.82 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=37.7
Q ss_pred cC-CcEEEEeCC--CCCchhhhHhhhcCCCEEEEecCCCCCCc-ceEEccCCCCCchhHHHHHHHHHH
Q psy16262 117 RE-PRLLVVTDP--HTDHQPITEAAYVNIPVIAFCNTESPLRF-VDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~-P~lvii~dp--~~d~~aI~Ea~~l~IP~IalvDTd~~~~~-IdypIP~Ndds~~si~li~~lL~~ 180 (222)
+. +|.||+... ......++++...+||+|.+ |++.+... .++.-+ |...+.......|.+
T Consensus 57 ~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 120 (276)
T 3ksm_A 57 QAPPDALILAPNSAEDLTPSVAQYRARNIPVLVV-DSDLAGDAHQGLVAT---DNYAAGQLAARALLA 120 (276)
T ss_dssp HSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCSSSCSSEEEEC---CHHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEE-ecCCCCCCcceEEcc---CHHHHHHHHHHHHHH
Confidence 45 999998874 35567899999999999976 55443332 344432 344555555444443
No 74
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=51.38 E-value=15 Score=30.80 Aligned_cols=64 Identities=8% Similarity=0.126 Sum_probs=38.0
Q ss_pred ccCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLARE 181 (222)
Q Consensus 116 ~~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~a 181 (222)
.+.+|.|++.....+ ..++++|...+||+|.+ |+..+....++.+- ..|....-.+....|.+.
T Consensus 58 ~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~-d~~~~~~~~~~~v~-~~D~~~~g~~~~~~L~~~ 123 (316)
T 1tjy_A 58 NQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW-DSDTKPECRSYYIN-QGTPKQLGSMLVEMAAHQ 123 (316)
T ss_dssp HTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCCCGGGCSEEEE-SCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEe-cCCCCCCCceEEEe-cCCHHHHHHHHHHHHHHH
Confidence 367999888755444 46788999999999987 65443322333331 123444445555555443
No 75
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.91 E-value=60 Score=27.16 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=25.3
Q ss_pred cCCcEEEEeCC-CCCchhhhHhhhcCCCEEEEecC
Q psy16262 117 REPRLLVVTDP-HTDHQPITEAAYVNIPVIAFCNT 150 (222)
Q Consensus 117 ~~P~lvii~dp-~~d~~aI~Ea~~l~IP~IalvDT 150 (222)
+.+|.||+... .....+++++...|||+|.+-..
T Consensus 61 ~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 61 DKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp SCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESC
T ss_pred CCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCC
Confidence 48999999852 23356788899999999986543
No 76
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=50.81 E-value=63 Score=23.54 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=47.3
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCccccccccCCccch-HHHhhccCCcEEEEeCCCC-CchhhhHhhhcCC-CEEEEe
Q psy16262 72 ADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTN-QIQAAFREPRLLVVTDPHT-DHQPITEAAYVNI-PVIAFC 148 (222)
Q Consensus 72 ~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN-~i~~~~~~P~lvii~dp~~-d~~aI~Ea~~l~I-P~Ialv 148 (222)
-++++++..+.. +.+++.++..+. +-++ |.+.. .+...+..-|+++.....+ -...+-||...|. |+|+--
T Consensus 33 ~~l~i~G~g~~~-~~~~~~~~~~~~---~v~~--g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~ 106 (166)
T 3qhp_A 33 IVLLLKGKGPDE-KKIKLLAQKLGV---KAEF--GFVNSNELLEILKTCTLYVHAANVESEAIACLEAISVGIVPVIANS 106 (166)
T ss_dssp EEEEEECCSTTH-HHHHHHHHHHTC---EEEC--CCCCHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECC
T ss_pred eEEEEEeCCccH-HHHHHHHHHcCC---eEEE--eecCHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcCCCcEEeeC
Confidence 356778876654 456677777765 2223 55543 3556677888887755322 2568999999997 999933
Q ss_pred c
Q psy16262 149 N 149 (222)
Q Consensus 149 D 149 (222)
|
T Consensus 107 ~ 107 (166)
T 3qhp_A 107 P 107 (166)
T ss_dssp T
T ss_pred C
Confidence 3
No 77
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=50.42 E-value=62 Score=22.64 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=44.8
Q ss_pred CCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchH---HHh-hccCCcEEEEeCCCCCchhhhHhhhc--CCC
Q psy16262 70 HPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ---IQA-AFREPRLLVVTDPHTDHQPITEAAYV--NIP 143 (222)
Q Consensus 70 ~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~---i~~-~~~~P~lvii~dp~~d~~aI~Ea~~l--~IP 143 (222)
.+.+||++...+.....+....+..|.. +. ..++. +.. ....||+|+ +........+++.+.. ++|
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~-v~------~~~~~~~al~~l~~~~~dlvi-~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFM-AD------VTESLEDGEYLMDIRNYDLVM-VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCE-EE------EESCHHHHHHHHHHSCCSEEE-ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcE-EE------EeCCHHHHHHHHHcCCCCEEE-EcCccHHHHHHHHHhcCCCcc
Confidence 3567889988888877777776665432 11 12221 111 124799999 4433334455555443 789
Q ss_pred EEEEecCCC
Q psy16262 144 VIAFCNTES 152 (222)
Q Consensus 144 ~IalvDTd~ 152 (222)
+|.+.+.+.
T Consensus 89 ii~ls~~~~ 97 (137)
T 2pln_A 89 VLVSSDNPT 97 (137)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCCC
Confidence 999987653
No 78
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=49.00 E-value=42 Score=27.08 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=36.3
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCC-CcceE-EccCCCCCchhHHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDI-AIPCNNKSPHSIGLMWWLLARE 181 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~-~~Idy-pIP~Ndds~~si~li~~lL~~a 181 (222)
+.+|.||+.....+. ..++++...++|+|.+ |+..+. ...++ .-+ |...+.......|.+.
T Consensus 57 ~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~~V~~---D~~~~~~~~~~~L~~~ 121 (290)
T 2fn9_A 57 AGYDAIIFNPTDADGSIANVKRAKEAGIPVFCV-DRGINARGLAVAQIYS---DNYYGGVLAGEYFVKF 121 (290)
T ss_dssp TTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEE-SSCCSCSSSSSEEEEE---CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEE-ecCCCCCCceEEEEeC---CHHHHHHHHHHHHHHH
Confidence 579999887654443 5688888899999976 544322 22333 332 3444555555555443
No 79
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=48.97 E-value=44 Score=28.33 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=33.5
Q ss_pred cCCcEEEEeCCCCC----chhhhHhhhcCCCEEEEecCCCCCCcceEEc
Q psy16262 117 REPRLLVVTDPHTD----HQPITEAAYVNIPVIAFCNTESPLRFVDIAI 161 (222)
Q Consensus 117 ~~P~lvii~dp~~d----~~aI~Ea~~l~IP~IalvDTd~~~~~IdypI 161 (222)
.+.|++|++...-+ ..++++|++.|.++|+|++.. .....|+++
T Consensus 78 ~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~~~iaIT~~~-~La~~~~~l 125 (302)
T 1tzb_A 78 ARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITTGG-RLAQMGVPT 125 (302)
T ss_dssp CSSSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEEESST-TGGGSSSCE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEECCCc-hHHHCCeeE
Confidence 57888888876554 568899999999999999987 443335555
No 80
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=48.50 E-value=15 Score=29.89 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=24.8
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
.-.||+||..+.......+..-++.||||+.+
T Consensus 57 ~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (255)
T 3md9_A 57 AMKPTMLLVSELAQPSLVLTQIASSGVNVVTV 88 (255)
T ss_dssp TTCCSEEEEETTCSCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEcCCcCchhHHHHHHHcCCcEEEe
Confidence 45899999887544445677778899999987
No 81
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=48.35 E-value=25 Score=28.61 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=29.5
Q ss_pred ccCCcEEEEeCCCCC-chhhhHhhhcCCCEEEEecCCCCCCcceEEc
Q psy16262 116 FREPRLLVVTDPHTD-HQPITEAAYVNIPVIAFCNTESPLRFVDIAI 161 (222)
Q Consensus 116 ~~~P~lvii~dp~~d-~~aI~Ea~~l~IP~IalvDTd~~~~~IdypI 161 (222)
.+.+|.||+.....+ ...++++...+||+|.+ |+..+...+++.-
T Consensus 74 ~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~ 119 (293)
T 2iks_A 74 QRQVDAIIVSTSLPPEHPFYQRWANDPFPIVAL-DRALDREHFTSVV 119 (293)
T ss_dssp HTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEE-ESCCCTTTCEEEE
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEE-CCccCcCCCCEEE
Confidence 367999998865433 34668888889999976 5543333355544
No 82
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=48.05 E-value=49 Score=27.51 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHhhC--------CCcEEEE-ec---ChhhHH---HHHHHHHHcCCcccccc-ccC--CccchH--
Q psy16262 52 RRTWEKLLLAARAIVAIEH--------PADVFVI-SS---RPIGQR---AVLKFASYTGATPIAGR-FTP--GAFTNQ-- 111 (222)
Q Consensus 52 ~~T~~~L~~a~~~i~~i~~--------~~~ILfv-~t---~~~~~~---~v~~~a~~~g~~yv~~r-W~g--G~LTN~-- 111 (222)
++|.++.++|+.-+-..-+ ...|-++ .. .+.... -+++.|+..|..+.... -.. +.....
T Consensus 16 ~~tr~rV~~aa~elgY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 95 (342)
T 1jx6_A 16 PEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSL 95 (342)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHH
Confidence 4677777777777764211 1234333 22 344433 34455666665432210 011 122211
Q ss_pred -HHh-hccCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCC
Q psy16262 112 -IQA-AFREPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTES 152 (222)
Q Consensus 112 -i~~-~~~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~ 152 (222)
++. ..+.+|.||+. ...+ ...++++...+||+|.+.|...
T Consensus 96 ~i~~l~~~~vdgiIi~-~~~~~~~~~~~~~~~~~ip~V~~~~~~~ 139 (342)
T 1jx6_A 96 SLMEALKSKSDYLIFT-LDTTRHRKFVEHVLDSTNTKLILQNITT 139 (342)
T ss_dssp HHHHHHHTTCSEEEEC-CSSSTTHHHHHHHHHHCSCEEEEETCCS
T ss_pred HHHHHHhcCCCEEEEe-CChHhHHHHHHHHHHcCCCEEEEecCCC
Confidence 222 23579999883 3222 4678888888999999988754
No 83
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=47.71 E-value=56 Score=27.26 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=28.3
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEec
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCN 149 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvD 149 (222)
.+.+|.||+.....+...++++...+||+|.+-+
T Consensus 116 ~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~ 149 (339)
T 3h5o_A 116 QHRPDGVLITGLSHAEPFERILSQHALPVVYMMD 149 (339)
T ss_dssp TTCCSEEEEECSCCCTTHHHHHHHTTCCEEEEES
T ss_pred cCCCCEEEEeCCCCCHHHHHHHhcCCCCEEEEee
Confidence 3689999999877667788888999999998844
No 84
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=46.99 E-value=27 Score=29.17 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHH--------hhC--CCcEEEEe---cChhhHH---HHHHHHHHcCCccccccccCCccch---HH
Q psy16262 52 RRTWEKLLLAARAIVA--------IEH--PADVFVIS---SRPIGQR---AVLKFASYTGATPIAGRFTPGAFTN---QI 112 (222)
Q Consensus 52 ~~T~~~L~~a~~~i~~--------i~~--~~~ILfv~---t~~~~~~---~v~~~a~~~g~~yv~~rW~gG~LTN---~i 112 (222)
++|.++.+.|+.-+-. ++. ...|-++- +.++... .+++.|+..|...+. ....+.... .+
T Consensus 31 ~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~-~~~~~~~~~~~~~~ 109 (332)
T 2hsg_A 31 PSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIIL-SNSDQNQDKELHLL 109 (332)
T ss_dssp HHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEE-EECCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEE-EeCCCChHHHHHHH
Confidence 5666777777665542 222 23453432 2344443 344566666654322 122221111 12
Q ss_pred Hhh-ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEc
Q psy16262 113 QAA-FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 161 (222)
Q Consensus 113 ~~~-~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypI 161 (222)
+.+ .+.+|.||+.....+...++++...+||+|.+ |+..+...+++.-
T Consensus 110 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~ 158 (332)
T 2hsg_A 110 NNMLGKQVDGIIFMSGNVTEEHVEELKKSPVPVVLA-ASIESTNQIPSVT 158 (332)
T ss_dssp HHTSCCSSCCEEECCSSCCHHHHHHHTTSSSCEEEE-SCCCSCTTSCEEE
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHhCCCCEEEE-ccccCCCCCCEEE
Confidence 222 35799999987665567788888889999976 5544322344443
No 85
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=45.86 E-value=17 Score=29.51 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=24.6
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEe
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFC 148 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ialv 148 (222)
.-.||+||..+...+...+..-++++||++.+-
T Consensus 57 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 57 SLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp TTCCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred ccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEec
Confidence 457999998765444566677788999998763
No 86
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=45.72 E-value=19 Score=29.96 Aligned_cols=70 Identities=7% Similarity=0.084 Sum_probs=35.7
Q ss_pred hCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEe--CCCCCchhhhHhhhcCCCEEE
Q psy16262 69 EHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVT--DPHTDHQPITEAAYVNIPVIA 146 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~--dp~~d~~aI~Ea~~l~IP~Ia 146 (222)
+.+.+|.+|+... ...++++++..+.. |+.+.+.- ......|+||.. |+..|..+-.+|+ .||| |-
T Consensus 52 ~~GA~VtVvap~~--~~~l~~l~~~~~i~-----~i~~~~~~---~dL~~adLVIaAT~d~~~N~~I~~~ak-~gi~-VN 119 (223)
T 3dfz_A 52 QEGAAITVVAPTV--SAEINEWEAKGQLR-----VKRKKVGE---EDLLNVFFIVVATNDQAVNKFVKQHIK-NDQL-VN 119 (223)
T ss_dssp GGCCCEEEECSSC--CHHHHHHHHTTSCE-----EECSCCCG---GGSSSCSEEEECCCCTHHHHHHHHHSC-TTCE-EE
T ss_pred HCCCEEEEECCCC--CHHHHHHHHcCCcE-----EEECCCCH---hHhCCCCEEEECCCCHHHHHHHHHHHh-CCCE-EE
Confidence 3466777776542 23355555544333 55444432 122346777665 2333455556666 8999 45
Q ss_pred EecC
Q psy16262 147 FCNT 150 (222)
Q Consensus 147 lvDT 150 (222)
.+|.
T Consensus 120 vvD~ 123 (223)
T 3dfz_A 120 MASS 123 (223)
T ss_dssp C---
T ss_pred EeCC
Confidence 5665
No 87
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=45.70 E-value=44 Score=32.09 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=47.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeC----CCCC--------chhhhHhh
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTD----PHTD--------HQPITEAA 138 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~d----p~~d--------~~aI~Ea~ 138 (222)
+++|+++.........+.+.....|.....-++-.- .....+|.||+.. +..+ ..+|+++.
T Consensus 446 Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~-------~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 446 GCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA-------VDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC-------CCGGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc-------ccccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 457999998887777777777777865433232111 1124689999974 3222 24677888
Q ss_pred hcCCCEEEEe
Q psy16262 139 YVNIPVIAFC 148 (222)
Q Consensus 139 ~l~IP~Ialv 148 (222)
..++|+.|||
T Consensus 519 ~~~iPiLGIC 528 (645)
T 3r75_A 519 DEGKPFMAVC 528 (645)
T ss_dssp HHTCCEEEET
T ss_pred HCCCCEEEEC
Confidence 8899999998
No 88
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=45.65 E-value=20 Score=29.13 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=25.4
Q ss_pred cCCcEEEEeCCCCC--chhhhHhhhcCCCEEEE
Q psy16262 117 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAF 147 (222)
Q Consensus 117 ~~P~lvii~dp~~d--~~aI~Ea~~l~IP~Ial 147 (222)
+.+|.||+.....+ ...++++. .+||+|.+
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFAT 93 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEEC
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEe
Confidence 57999999876666 67899999 99999986
No 89
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=45.27 E-value=52 Score=26.55 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=34.2
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCC-CcceEEccCCCCCchhHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~-~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
+.+|.||+.....+. ..++++...+||+|.+ |+..+. ...++.-+ |...+-+.....|.
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 117 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITI-DRSANGGDVVCHIAS---DNVKGGEMAAEFIA 117 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCSSSCCSEEEEE---CHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEe-cCCCCCcceeEEEec---ChHHHHHHHHHHHH
Confidence 578998886544332 5688888899999976 554332 22444432 33344444444443
No 90
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=44.64 E-value=1.3e+02 Score=26.93 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCc--cccccccCCccch-HHHhhccCCcEEEEeCCCCCchhh
Q psy16262 58 LLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGAT--PIAGRFTPGAFTN-QIQAAFREPRLLVVTDPHTDHQPI 134 (222)
Q Consensus 58 L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~--yv~~rW~gG~LTN-~i~~~~~~P~lvii~dp~~d~~aI 134 (222)
+..|+..+..-...-+++++|......+.+++.++..|.. .| .|. |...+ .+......-|+++......--.++
T Consensus 393 li~a~~~l~~~~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v--~~~-g~~~~~~~~~~~~~adv~v~ps~~~~g~~~ 469 (568)
T 2vsy_A 393 SMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRL--VFM-PKLPHPQYLARYRHADLFLDTHPYNAHTTA 469 (568)
T ss_dssp HHHHHHHHHHHCTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGE--EEE-CCCCHHHHHHHGGGCSEEECCSSSCCSHHH
T ss_pred HHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHcCCChhHE--Eee-CCCCHHHHHHHHhcCCEEeeCCCCCCcHHH
Confidence 4444444433223456778883333345566677776643 12 244 44442 344556677887766544557889
Q ss_pred hHhhhcCCCEEEE
Q psy16262 135 TEAAYVNIPVIAF 147 (222)
Q Consensus 135 ~Ea~~l~IP~Ial 147 (222)
-||...|+|+|++
T Consensus 470 lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 470 SDALWTGCPVLTT 482 (568)
T ss_dssp HHHHHTTCCEEBC
T ss_pred HHHHhCCCCEEec
Confidence 9999999999994
No 91
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.63 E-value=64 Score=26.24 Aligned_cols=60 Identities=7% Similarity=0.032 Sum_probs=35.1
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCC--C----EEEEecCC----CCCCcceEEccC-CCCCchhHHHHHH
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNI--P----VIAFCNTE----SPLRFVDIAIPC-NNKSPHSIGLMWW 176 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~I--P----~IalvDTd----~~~~~IdypIP~-Ndds~~si~li~~ 176 (222)
..|+.||..+...-.-+++.+...|+ | +||+=|+. ..|...++-.|. -.-+..++.+++.
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~~g~~av~~L~~ 256 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGKQIASMICD 256 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSCTTCSCCSCCEEEECCCHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCccHHhhcCCCceeEecCcHHHHHHHHHHHHHH
Confidence 57999998763322345566666654 3 88887775 344455655554 3444555554443
No 92
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=43.53 E-value=28 Score=29.47 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=35.6
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCC-CcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~-~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.||+.....+...++++...+||+|.+ |...+. ..+++.-. |...+.......|.
T Consensus 120 ~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~~V~~---D~~~~~~~a~~~L~ 180 (348)
T 3bil_A 120 SHGVDGIICVPNEECANQLEDLQKQGMPVVLV-DRELPGDSTIPTATS---NPQPGIAAAVELLA 180 (348)
T ss_dssp HTTCSCEEECCCGGGHHHHHHHHHC-CCEEEE-SSCCSCC-CCCEEEE---ECHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-cccCCCCCCCCEEEe---ChHHHHHHHHHHHH
Confidence 36799999887655556778888889999976 554332 23444442 33444444444443
No 93
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=43.37 E-value=54 Score=30.74 Aligned_cols=75 Identities=9% Similarity=0.108 Sum_probs=47.6
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeC-CC---------CCchhhhHhhhc
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTD-PH---------TDHQPITEAAYV 140 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~d-p~---------~d~~aI~Ea~~l 140 (222)
..+|+++....+....+.+..+..|.+...-.| .-.+ ..+. ...||.||+.. |. -+..+++.|...
T Consensus 7 ~~~IlilD~Gs~~~~~I~r~lre~Gv~~eiv~~-~~~~-~~i~--~~~~dgIIlsGGp~s~~~~~~~~~~~~l~~~a~~~ 82 (556)
T 3uow_A 7 YDKILVLNFGSQYFHLIVKRLNNIKIFSETKDY-GVEL-KDIK--DMNIKGVILSGGPYSVTEAGSPHLKKEVFEYFLEK 82 (556)
T ss_dssp CCEEEEEESSCTTHHHHHHHHHHTTCCEEEEET-TCCG-GGTT--TSCEEEEEECCCSCCTTSTTCCCCCHHHHHHHHHT
T ss_pred CCEEEEEECCCccHHHHHHHHHHCCCeEEEEEC-CCCH-HHHh--hcCCCEEEECCCCCcccccCCcchhHHHHHHhhhc
Confidence 467999999988877888888888877543333 1111 1111 23789999986 21 122344445556
Q ss_pred CCCEEEEec
Q psy16262 141 NIPVIAFCN 149 (222)
Q Consensus 141 ~IP~IalvD 149 (222)
++|+.|+|=
T Consensus 83 g~PvLGIC~ 91 (556)
T 3uow_A 83 KIPIFGICY 91 (556)
T ss_dssp TCCEEEETH
T ss_pred CCCEEEECH
Confidence 999999983
No 94
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=42.86 E-value=17 Score=32.27 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=26.9
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCC
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTE 151 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd 151 (222)
..||+|++.+......+...|.++|||+ +.+...
T Consensus 93 ~kPD~Vlv~gd~~~~~aalaA~~~~IPv-~h~eag 126 (385)
T 4hwg_A 93 EKPDAVLFYGDTNSCLSAIAAKRRKIPI-FHMEAG 126 (385)
T ss_dssp HCCSEEEEESCSGGGGGHHHHHHTTCCE-EEESCC
T ss_pred cCCcEEEEECCchHHHHHHHHHHhCCCE-EEEeCC
Confidence 4899999998766666688999999996 455553
No 95
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=42.74 E-value=43 Score=26.43 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=38.9
Q ss_pred cEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCC---------chhhhHhhhcCCC
Q psy16262 73 DVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD---------HQPITEAAYVNIP 143 (222)
Q Consensus 73 ~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d---------~~aI~Ea~~l~IP 143 (222)
+|++|......-..|.+..++.|...+.. .+. .-....|.||+-.+..- ..+++++...++|
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~-------~~~--~~l~~~D~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~P 74 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTIS-------RDP--QVVLAADKLFLPGVGTASEAMKNLTERDLIELVKRVEKP 74 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEE-------CCH--HHHHHCSEEEECCCSCHHHHHHHHHHTTCHHHHHHCCSC
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEE-------CCH--HHHhCCCEEEECCCCCHHHHHHHHHhcChHHHHHHcCCC
Confidence 56666655544445666666677654321 111 11234677777554221 2346777788999
Q ss_pred EEEEec
Q psy16262 144 VIAFCN 149 (222)
Q Consensus 144 ~IalvD 149 (222)
+.|+|=
T Consensus 75 vlGICl 80 (211)
T 4gud_A 75 LLGICL 80 (211)
T ss_dssp EEEETH
T ss_pred EEEEch
Confidence 999984
No 96
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=42.52 E-value=1e+02 Score=25.91 Aligned_cols=90 Identities=10% Similarity=0.079 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhh--CCCcEEEEecChh-hHHHHHHHHHHcCCccccccccCCccchH-HHhhccCCcEEEEeCCC-CC
Q psy16262 56 EKLLLAARAIVAIE--HPADVFVISSRPI-GQRAVLKFASYTGATPIAGRFTPGAFTNQ-IQAAFREPRLLVVTDPH-TD 130 (222)
Q Consensus 56 ~~L~~a~~~i~~i~--~~~~ILfv~t~~~-~~~~v~~~a~~~g~~yv~~rW~gG~LTN~-i~~~~~~P~lvii~dp~-~d 130 (222)
..+..|+..+..-. .+-+++++|..+. ..+.+++.++..+ ......|.+... +......-|++++.... .-
T Consensus 268 ~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~----~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~ 343 (439)
T 3fro_A 268 DVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG----NVKVITEMLSREFVRELYGSVDFVIIPSYFEPF 343 (439)
T ss_dssp HHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT----TEEEECSCCCHHHHHHHHTTCSEEEECBSCCSS
T ss_pred HHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC----CEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCc
Confidence 34445555444311 2345677887653 2355677777777 223456755543 45566778887766532 22
Q ss_pred chhhhHhhhcCCCEEEEecC
Q psy16262 131 HQPITEAAYVNIPVIAFCNT 150 (222)
Q Consensus 131 ~~aI~Ea~~l~IP~IalvDT 150 (222)
...+-||...|.|+|+- |.
T Consensus 344 ~~~~~EAma~G~Pvi~s-~~ 362 (439)
T 3fro_A 344 GLVALEAMCLGAIPIAS-AV 362 (439)
T ss_dssp CHHHHHHHHTTCEEEEE-SS
T ss_pred cHHHHHHHHCCCCeEEc-CC
Confidence 57899999999999995 44
No 97
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=41.88 E-value=31 Score=27.61 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=22.2
Q ss_pred cCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCC
Q psy16262 117 REPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES 152 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~ 152 (222)
+.+|.+|+.....+...++++...+||+|.+ |+..
T Consensus 54 ~~vdgiI~~~~~~~~~~~~~~~~~~iPvV~~-~~~~ 88 (276)
T 2h0a_A 54 YLTDGLILASYDLTERFEEGRLPTERPVVLV-DAQN 88 (276)
T ss_dssp CCCSEEEEESCCCC------CCSCSSCEEEE-SSCC
T ss_pred CCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-eccC
Confidence 5799999987655556778888889999987 5543
No 98
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=41.81 E-value=20 Score=29.81 Aligned_cols=32 Identities=13% Similarity=0.145 Sum_probs=23.9
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
.-.||+||..+.......+...++++||++.+
T Consensus 57 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 57 ALRPDILIGTEEMGPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp TTCCSEEEECTTCCCHHHHHHHHHTTCCEEEC
T ss_pred hcCCCEEEEeCccCcHHHHHHHHHcCCcEEEe
Confidence 35799999876443456677778899999876
No 99
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=41.41 E-value=19 Score=29.14 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=23.4
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
.-.||+||..+...+...+..-++++|||+.+
T Consensus 55 ~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~ 86 (245)
T 1n2z_A 55 ALKPDLVIAWRGGNAERQVDQLASLGIKVMWV 86 (245)
T ss_dssp HTCCSEEEECTTTSCHHHHHHHHHHTCCEEEC
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHCCCcEEEe
Confidence 35799999864334455677778899999965
No 100
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=40.99 E-value=54 Score=27.92 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=43.0
Q ss_pred ccCCccchH--------HHhhccCCcEEEEeC-----CCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCC
Q psy16262 103 FTPGAFTNQ--------IQAAFREPRLLVVTD-----PHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 166 (222)
Q Consensus 103 W~gG~LTN~--------i~~~~~~P~lvii~d-----p~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndd 166 (222)
++||.|.=. .+++..+||+++|=. |+.==.|-+=.-.+++||||+.-|----+..++.-|++..
T Consensus 86 YIPG~LaFRE~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L~~~g~~~~~~~~~~ 162 (246)
T 3ga2_A 86 YVSGFLAFRELPLIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKTYLKIKGCDFVTPEIEV 162 (246)
T ss_dssp SSSSCGGGGTHHHHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEESSCCCCTTCCCCCCCSST
T ss_pred CCCCchhhhhHHHHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeeeccccccCCccccCccccC
Confidence 788888764 334556899998754 5555566666778899999998875433233455565543
No 101
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=40.84 E-value=57 Score=26.10 Aligned_cols=60 Identities=18% Similarity=0.276 Sum_probs=34.6
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCC-CcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~-~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
+.+|.+|+.....+. ..++++...+||+|.+ |+..+. ...++.-. |...+-+.....|.+
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 118 (271)
T 2dri_A 56 RGTKILLINPTDSDAVGNAVKMANQANIPVITL-DRQATKGEVVSHIAS---DNVLGGKIAGDYIAK 118 (271)
T ss_dssp TTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCSSSCCSEEEEE---CHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEe-cCCCCCCceeEEEec---ChHHHHHHHHHHHHH
Confidence 568998886544332 4688888899999976 544332 22344432 334444444444433
No 102
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=40.25 E-value=97 Score=24.92 Aligned_cols=91 Identities=9% Similarity=0.051 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCcEEEEecChhh------HHHHHHHHHHcCCccccccc-cCCccch-----HHHhhc----c-CCcE
Q psy16262 59 LLAARAIVAIEHPADVFVISSRPIG------QRAVLKFASYTGATPIAGRF-TPGAFTN-----QIQAAF----R-EPRL 121 (222)
Q Consensus 59 ~~a~~~i~~i~~~~~ILfv~t~~~~------~~~v~~~a~~~g~~yv~~rW-~gG~LTN-----~i~~~~----~-~P~l 121 (222)
+.|+..+... ..++|.|++..... .+-.++..+..|..+.. .| ..|.++- .++.+. . .|+.
T Consensus 114 ~~a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a 191 (287)
T 3bbl_A 114 RQAVEYLIGR-GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIET-GYILRGEGTFEVGRAMTLHLLDLSPERRPTA 191 (287)
T ss_dssp HHHHHHHHHH-TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCG-GGEEECCSSHHHHHHHHHHHHTSCTTTSCSE
T ss_pred HHHHHHHHHC-CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh-hhEEeCCCCHHHHHHHHHHHHhhCCCCCCcE
Confidence 3455555543 45788888765321 12233444555644322 22 2233322 122222 2 6899
Q ss_pred EEEeCCCCCchhhhHhhhcCC--C----EEEEecCC
Q psy16262 122 LVVTDPHTDHQPITEAAYVNI--P----VIAFCNTE 151 (222)
Q Consensus 122 vii~dp~~d~~aI~Ea~~l~I--P----~IalvDTd 151 (222)
||..+...-.-+++.+...|+ | ++|+=|+.
T Consensus 192 i~~~~d~~a~g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 192 IMTLNDTMAIGAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred EEECCcHHHHHHHHHHHHcCCCCCCCEEEEEECCch
Confidence 998764333345566666554 4 78887664
No 103
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=39.81 E-value=48 Score=31.19 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=61.7
Q ss_pred hCCCcEEEEecChhhH--HHHHHHHHH-cCCccccccccCCccchHHHhhccCCcEEEEeCCCCC----chhhhHhhhcC
Q psy16262 69 EHPADVFVISSRPIGQ--RAVLKFASY-TGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTD----HQPITEAAYVN 141 (222)
Q Consensus 69 ~~~~~ILfv~t~~~~~--~~v~~~a~~-~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d----~~aI~Ea~~l~ 141 (222)
.+.++|.|+++..... ...+.+..+ .|..... ..+.-+ ..........|++|++...-+ ..++++|+..|
T Consensus 290 ~~~~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~~~--~~~~e~-~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G 366 (608)
T 2bpl_A 290 SKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDV--EIASEF-RYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELG 366 (608)
T ss_dssp HHCCEEEEEECHHHHHHHHHHHHHHHHHSCCCEEE--EEHHHH-TTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTT
T ss_pred cCCCEEEEEEehHHHHHHHHHHHHHHHHhCCCEEE--EehhHh-hccCCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHcC
Confidence 3457888888875332 223333333 4443211 001000 000012356788888875444 56889999999
Q ss_pred -CCEEEEecCCCCC-C-cceEEccCC--C-------CCchhHHHHHHHHHHHHHhhhC
Q psy16262 142 -IPVIAFCNTESPL-R-FVDIAIPCN--N-------KSPHSIGLMWWLLAREVLRFRG 187 (222)
Q Consensus 142 -IP~IalvDTd~~~-~-~IdypIP~N--d-------ds~~si~li~~lL~~ai~~~~g 187 (222)
.++|+|++...++ . ..|+.++.. . +|..+.-+++.+|+-++...+|
T Consensus 367 ~a~~IaIT~~~~S~La~~ad~~l~~~~~~E~~~a~t~s~t~~l~~~~lL~~~l~~~~~ 424 (608)
T 2bpl_A 367 YLGSLAICNVPGSSLVRESDLALMTNAGTEIGVASTKAFTTQLTVLLMLVAKLSKLKG 424 (608)
T ss_dssp CSEEEEEESSTTCHHHHHSSEEEECCCCCCCSSSCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCHHHHhcCEEEEecCCceeeecchHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999874333 1 244444332 2 1233444455566666666555
No 104
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=39.14 E-value=1.8e+02 Score=24.63 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecChh----hHHHHHHHHHHcCCc-cccccccCCccch----HHHhhccCCcEEEEeC
Q psy16262 56 EKLLLAARAIVAIEHPADVFVISSRPI----GQRAVLKFASYTGAT-PIAGRFTPGAFTN----QIQAAFREPRLLVVTD 126 (222)
Q Consensus 56 ~~L~~a~~~i~~i~~~~~ILfv~t~~~----~~~~v~~~a~~~g~~-yv~~rW~gG~LTN----~i~~~~~~P~lvii~d 126 (222)
..|.+|+..+..-...-+++++|..+. ..+.+++.++..+.. .| +|. |.+.+ .+......-|+++...
T Consensus 247 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V--~~~-G~~~~~~~~~~~~~~~~ad~~v~ps 323 (416)
T 2x6q_A 247 FDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDV--KVL-TNLIGVHAREVNAFQRASDVILQMS 323 (416)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTE--EEE-EGGGTCCHHHHHHHHHHCSEEEECC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcE--EEe-cccCCCCHHHHHHHHHhCCEEEECC
Confidence 334445444433222456778887642 344566666666542 11 133 22221 2334445667776654
Q ss_pred CCC-CchhhhHhhhcCCCEEEE
Q psy16262 127 PHT-DHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 127 p~~-d~~aI~Ea~~l~IP~Ial 147 (222)
..+ -..++-||...|.|+|+-
T Consensus 324 ~~E~~~~~~lEAma~G~PvI~~ 345 (416)
T 2x6q_A 324 IREGFGLTVTEAMWKGKPVIGR 345 (416)
T ss_dssp SSCSSCHHHHHHHHTTCCEEEE
T ss_pred CcCCCccHHHHHHHcCCCEEEc
Confidence 322 256899999999999994
No 105
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=39.13 E-value=84 Score=26.30 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchH-HHhhccCCcEEEEeCC--CCCch
Q psy16262 56 EKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ-IQAAFREPRLLVVTDP--HTDHQ 132 (222)
Q Consensus 56 ~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~-i~~~~~~P~lvii~dp--~~d~~ 132 (222)
..+.+|+..+..-..+-++.++|..+. +.+++.++.. ...| .| -|.+.+. +...+..-|+++.... ..-..
T Consensus 225 ~~li~a~~~l~~~~~~~~l~i~G~~~~--~~l~~~~~~~-~~~v--~~-~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~ 298 (406)
T 2gek_A 225 AVLLAALPKLVARFPDVEILIVGRGDE--DELREQAGDL-AGHL--RF-LGQVDDATKASAMRSADVYCAPHLGGESFGI 298 (406)
T ss_dssp HHHHHHHHHHHTTSTTCEEEEESCSCH--HHHHHHTGGG-GGGE--EE-CCSCCHHHHHHHHHHSSEEEECCCSCCSSCH
T ss_pred HHHHHHHHHHHHHCCCeEEEEEcCCcH--HHHHHHHHhc-cCcE--EE-EecCCHHHHHHHHHHCCEEEecCCCCCCCch
Confidence 344444444332112456778887766 3445444433 1111 23 3556553 3455567788877642 22256
Q ss_pred hhhHhhhcCCCEEEE
Q psy16262 133 PITEAAYVNIPVIAF 147 (222)
Q Consensus 133 aI~Ea~~l~IP~Ial 147 (222)
.+-||...|+|+|+-
T Consensus 299 ~~~Ea~a~G~PvI~~ 313 (406)
T 2gek_A 299 VLVEAMAAGTAVVAS 313 (406)
T ss_dssp HHHHHHHHTCEEEEC
T ss_pred HHHHHHHcCCCEEEe
Confidence 899999999999984
No 106
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=39.12 E-value=48 Score=26.87 Aligned_cols=61 Identities=21% Similarity=0.130 Sum_probs=37.2
Q ss_pred cCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCC------CcceEEccCCCCCchhHHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPL------RFVDIAIPCNNKSPHSIGLMWWLLARE 181 (222)
Q Consensus 117 ~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~------~~IdypIP~Ndds~~si~li~~lL~~a 181 (222)
+.+|.||+.....+ ...++++...+||+|.+ |+..+. ..+++.- .|...+.......|.+.
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~~~~~~V~---~d~~~~g~~~~~~L~~~ 126 (309)
T 2fvy_A 58 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFF-NKEPSRKALDSYDKAYYVG---TDSKESGIIQGDLIAKH 126 (309)
T ss_dssp TTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEE-SSCCCHHHHHTCTTEEEEE---CCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEe-cCCCCcccccccCccEEEe---cCHHHHHHHHHHHHHHH
Confidence 57999988765443 35688888899999976 554332 1244433 24445555555555543
No 107
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=39.05 E-value=40 Score=27.42 Aligned_cols=61 Identities=7% Similarity=0.017 Sum_probs=36.5
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCCCCCCc-------c-eEEccCCCCCchhHHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTESPLRF-------V-DIAIPCNNKSPHSIGLMWWLLARE 181 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd~~~~~-------I-dypIP~Ndds~~si~li~~lL~~a 181 (222)
+.+|.+|+.....+. ..++++...+||+|.+ |+..+... + ++.-+ |...+-+.....|.+.
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~~ 128 (288)
T 1gud_A 58 KNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNL-DEKIDMDNLKKAGGNVEAFVTT---DNVAVGAKGASFIIDK 128 (288)
T ss_dssp SSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEE-SSCCCHHHHHHTTCCCSEEEEC---CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEE-CCCCCcccccccCCceeEEECC---ChHHHHHHHHHHHHHH
Confidence 568999887654432 5688888899999876 55433221 3 55442 3445555555544443
No 108
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=39.03 E-value=38 Score=27.30 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=37.4
Q ss_pred cCCcEEEEeCCC--CCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPH--TDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~P~lvii~dp~--~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
+.+|.||+.... .....++++...+||+|.+ |++.+. .+++.-. |...+.......|.+
T Consensus 60 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~-~~~~V~~---D~~~~g~~~~~~l~~ 120 (291)
T 3l49_A 60 QKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTV-DTATPH-AINNTTS---NNYSIGAELALQMVA 120 (291)
T ss_dssp HCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEE-SCCCTT-CSEEEEE---CHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEe-cCCCCC-cCceEec---ChHHHHHHHHHHHHH
Confidence 579999988544 3467788999999999876 555433 3555443 334444444444443
No 109
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=38.84 E-value=19 Score=29.99 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.7
Q ss_pred CchhhhHhhhcCCCEEEEe
Q psy16262 130 DHQPITEAAYVNIPVIAFC 148 (222)
Q Consensus 130 d~~aI~Ea~~l~IP~Ialv 148 (222)
+..++++|...++|+.|+|
T Consensus 97 ~~~lir~a~~~~~PiLGIC 115 (254)
T 3fij_A 97 EIALVRAALDAGKPIFAIC 115 (254)
T ss_dssp HHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 4578899999999999998
No 110
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=38.65 E-value=93 Score=28.35 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=25.9
Q ss_pred cCCcEEEEeC-CCCCchhhhHhhhcCCCEEEEec
Q psy16262 117 REPRLLVVTD-PHTDHQPITEAAYVNIPVIAFCN 149 (222)
Q Consensus 117 ~~P~lvii~d-p~~d~~aI~Ea~~l~IP~IalvD 149 (222)
..+|+||+.. -..+.-.+.+|+..|||+++=.+
T Consensus 80 ~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e 113 (494)
T 4hv4_A 80 LDASVVVVSTAISADNPEIVAAREARIPVIRRAE 113 (494)
T ss_dssp TTCSEEEECTTSCTTCHHHHHHHHTTCCEEEHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHCCCCEEcHHH
Confidence 4588888775 35677889999999999997554
No 111
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=38.47 E-value=46 Score=27.40 Aligned_cols=62 Identities=16% Similarity=0.050 Sum_probs=38.4
Q ss_pred cCCcEEEEeCCCC--CchhhhHhhhcCCCEEEEecCCCCC-Ccce-EEccCCCCCchhHHHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHT--DHQPITEAAYVNIPVIAFCNTESPL-RFVD-IAIPCNNKSPHSIGLMWWLLAREV 182 (222)
Q Consensus 117 ~~P~lvii~dp~~--d~~aI~Ea~~l~IP~IalvDTd~~~-~~Id-ypIP~Ndds~~si~li~~lL~~ai 182 (222)
+.+|.||+..... ...+++++...|||+|.+ |+..+- ..++ +.-. |...+-......|.+..
T Consensus 58 ~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~~~~ 123 (330)
T 3uug_A 58 KGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAY-DRLIRNSGDVSYYATF---DNFQVGVLQATSITDKL 123 (330)
T ss_dssp HTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEE-SSCCCSCTTCCEEEEE---CHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEE-CCCCCCCCceeEEEEe---CHHHHHHHHHHHHHHHh
Confidence 5799999876543 345689999999999976 444322 2343 3332 44555555555555543
No 112
>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}
Probab=38.37 E-value=2e+02 Score=25.09 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=60.3
Q ss_pred hhCCCcEEEEecChhhH---HHHHHHHHHcCCc---cccccccCCccchHHHhhccCCc-EEEEeCCCCC---chhhhHh
Q psy16262 68 IEHPADVFVISSRPIGQ---RAVLKFASYTGAT---PIAGRFTPGAFTNQIQAAFREPR-LLVVTDPHTD---HQPITEA 137 (222)
Q Consensus 68 i~~~~~ILfv~t~~~~~---~~v~~~a~~~g~~---yv~~rW~gG~LTN~i~~~~~~P~-lvii~dp~~d---~~aI~Ea 137 (222)
+.+...++|+|...... +.-.|+-+.+... |-.+.|..|-+ .+. .++ .||++.+..+ ..+++|.
T Consensus 220 ~~~~~~~~~lGrG~~~~~A~EgALKlkE~s~i~ae~~~a~E~~HGP~-----ali-d~~~pvi~~~~~~~~~~~~~~~~l 293 (366)
T 3knz_A 220 LRDSADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIY-----NAF-NAQSALIMLDPQPDARQDRLAQIL 293 (366)
T ss_dssp HHTCSEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHHTHH-----HHC-CTTEEEEEECSSCCHHHHHHHHHH
T ss_pred hcCCCeEEEEeCCCCHHHHHHHHHHHHHHhcccceeechhhcCcCch-----hhh-CCCceEEEEecCchHHHHHHHHHH
Confidence 34667889999887542 3333443333322 23334444422 222 333 3555566443 3577888
Q ss_pred hhcCCCEEEEecCCCCCCcceEEccCCCCC-chhH--HHHHHHHHHHHHhhhC
Q psy16262 138 AYVNIPVIAFCNTESPLRFVDIAIPCNNKS-PHSI--GLMWWLLAREVLRFRG 187 (222)
Q Consensus 138 ~~l~IP~IalvDTd~~~~~IdypIP~Ndds-~~si--~li~~lL~~ai~~~~g 187 (222)
+..|-++++|.+.+.. ...++.+|.-.+. ...+ -..+.+|+-.+...||
T Consensus 294 ~~~g~~vi~i~~~~~~-~~~~~~~p~~~~~~l~pl~~~v~~Qllay~~A~~rG 345 (366)
T 3knz_A 294 GEWTPSIYRIGPQVEN-NGLNLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKG 345 (366)
T ss_dssp HHHCSCEEEEESSSCC-SSSSEECCCCCCTTTTHHHHHHHHHHHHHHCC----
T ss_pred HHcCCeEEEEecCCCc-cceeEEeCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8889999999876532 4578888875333 2222 2334555555544443
No 113
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=37.59 E-value=66 Score=22.03 Aligned_cols=46 Identities=11% Similarity=0.285 Sum_probs=31.1
Q ss_pred HHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCcc
Q psy16262 63 RAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAF 108 (222)
Q Consensus 63 ~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~L 108 (222)
+.+..+..+..+.++.+.+...+-|.++|+..|..++...--+|.+
T Consensus 29 kal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~ 74 (82)
T 3lvj_C 29 KTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKETDGLPY 74 (82)
T ss_dssp HHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCEEEEEECSSSSE
T ss_pred HHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEE
Confidence 3344444555566788888888889999999998776543344433
No 114
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=36.79 E-value=30 Score=29.19 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=25.3
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecC
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNT 150 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDT 150 (222)
.-.||+||..+. .+...+.+-.++|||++.+-..
T Consensus 82 ~l~PDlIi~~~~-~~~~~~~~L~~~Gipvv~~~~~ 115 (326)
T 3psh_A 82 ALKPDVVFVTNY-APSEMIKQISDVNIPVVAISLR 115 (326)
T ss_dssp HTCCSEEEEETT-CCHHHHHHHHTTTCCEEEECSC
T ss_pred ccCCCEEEEeCC-CChHHHHHHHHcCCCEEEEecc
Confidence 458999998764 3455677778899999987443
No 115
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.65 E-value=80 Score=25.29 Aligned_cols=116 Identities=8% Similarity=0.068 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCCcEEEEecChhh------HHHHHHHHHHcCCccccccccCCccchH-----HHh---hccCCcEEEE
Q psy16262 59 LLAARAIVAIEHPADVFVISSRPIG------QRAVLKFASYTGATPIAGRFTPGAFTNQ-----IQA---AFREPRLLVV 124 (222)
Q Consensus 59 ~~a~~~i~~i~~~~~ILfv~t~~~~------~~~v~~~a~~~g~~yv~~rW~gG~LTN~-----i~~---~~~~P~lvii 124 (222)
+.|+..+... ..++|.|++..... .+...+..+..|..+.......|..+-. ++. ....|+.||.
T Consensus 120 ~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 198 (292)
T 3k4h_A 120 REVAEYLISL-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMA 198 (292)
T ss_dssp HHHHHHHHHT-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred HHHHHHHHHC-CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEE
Confidence 3455555542 44678888766432 1223344455565432221123333321 122 2347899998
Q ss_pred eCCCCCchhhhHhhhcCC--C----EEEEecCC----CCCCcceEEccCCCCCchhHHHHH
Q psy16262 125 TDPHTDHQPITEAAYVNI--P----VIAFCNTE----SPLRFVDIAIPCNNKSPHSIGLMW 175 (222)
Q Consensus 125 ~dp~~d~~aI~Ea~~l~I--P----~IalvDTd----~~~~~IdypIP~Ndds~~si~li~ 175 (222)
.+...-.-+++.+...|+ | +||+=|+. ..|...++-.|.-.-+..++.+++
T Consensus 199 ~~d~~a~g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lttv~~~~~~~g~~av~~l~ 259 (292)
T 3k4h_A 199 TDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALV 259 (292)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTCEEEEESCCHHHHHSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHhCCCCCCeEEEEEecCcchhhccCCCceEEecCHHHHHHHHHHHHH
Confidence 764333345555555554 4 88876653 234444555444333344444333
No 116
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=36.59 E-value=52 Score=23.05 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHHhh-CCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccc
Q psy16262 61 AARAIVAIE-HPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFT 109 (222)
Q Consensus 61 a~~~i~~i~-~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LT 109 (222)
+.+.+..+. .+..+.++.+.+...+-|.++|+..|..+....--+|.++
T Consensus 18 ~kkal~~l~~~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~~~~g~~~ 67 (87)
T 3hz7_A 18 AKKALAELGEAGGVVTVLVDNDISRQNLQKMAEGMGYQSEYLEKDNGVIE 67 (87)
T ss_dssp HHHHHHTTGGGCCEEEEEESSHHHHHHHHHHHHHHTCEEEEEECGGGCEE
T ss_pred HHHHHHhccCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEecCCEEE
Confidence 334455565 5666678888888888899999999988766544555443
No 117
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=36.40 E-value=47 Score=27.22 Aligned_cols=112 Identities=10% Similarity=0.059 Sum_probs=59.2
Q ss_pred HHHHHHHHhh-CCCcEEEEecChh--h---HHHHHHHHHHcCCccccccccCC--ccchHHHhhccCCcEEEEeCCCCCc
Q psy16262 60 LAARAIVAIE-HPADVFVISSRPI--G---QRAVLKFASYTGATPIAGRFTPG--AFTNQIQAAFREPRLLVVTDPHTDH 131 (222)
Q Consensus 60 ~a~~~i~~i~-~~~~ILfv~t~~~--~---~~~v~~~a~~~g~~yv~~rW~gG--~LTN~i~~~~~~P~lvii~dp~~d~ 131 (222)
.++..+.... ..++|.|++.... . .+-.++.++..|..+.. .|+.. .+...++.+...||.||+.+ |.
T Consensus 121 ~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~~~~~~~~~~~~l~~~~dai~~~~---D~ 196 (295)
T 3lft_A 121 QQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVET-FAVPSTNEIASTVTVMTSKVDAIWVPI---DN 196 (295)
T ss_dssp HHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE-EEESSGGGHHHHHHHHTTTCSEEEECS---CH
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEE-EecCCHHHHHHHHHHHHhcCCEEEECC---ch
Confidence 4445555442 3467888765532 1 13345566666765433 33321 11122344456899999875 32
Q ss_pred hh------hhH-hhhcCCCEEEEecCC-CCCCcceEEccCCCCCchhHHHHH
Q psy16262 132 QP------ITE-AAYVNIPVIAFCNTE-SPLRFVDIAIPCNNKSPHSIGLMW 175 (222)
Q Consensus 132 ~a------I~E-a~~l~IP~IalvDTd-~~~~~IdypIP~Ndds~~si~li~ 175 (222)
.| ++| +...++|++|+-|.. ..+...++-.|.-.-+..+..+++
T Consensus 197 ~a~g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~l~ 248 (295)
T 3lft_A 197 TIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKMIV 248 (295)
T ss_dssp HHHHTHHHHHHHTTTTCCCEEESSHHHHTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCEEeCCHHHHhcCcEEEEecCHHHHHHHHHHHHH
Confidence 32 333 334689999997754 234556666554444444444433
No 118
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=35.66 E-value=1.7e+02 Score=24.51 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCc-cccccccCCccchHHHhhccCCcEEEEeCCCC-C
Q psy16262 53 RTWEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGAT-PIAGRFTPGAFTNQIQAAFREPRLLVVTDPHT-D 130 (222)
Q Consensus 53 ~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~-yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~-d 130 (222)
+-...+.+|+..+..- .+-++++++..+.. +.+++.++..|.. .| .|.| . ...+......-|++++....+ -
T Consensus 224 Kg~~~li~a~~~l~~~-~~~~l~i~G~g~~~-~~l~~~~~~~~l~~~v--~~~g-~-~~~~~~~~~~adv~v~ps~~e~~ 297 (394)
T 2jjm_A 224 KRVQDVVQAFAKIVTE-VDAKLLLVGDGPEF-CTILQLVKNLHIEDRV--LFLG-K-QDNVAELLAMSDLMLLLSEKESF 297 (394)
T ss_dssp GTHHHHHHHHHHHHHS-SCCEEEEECCCTTH-HHHHHHHHTTTCGGGB--CCCB-S-CSCTHHHHHTCSEEEECCSCCSC
T ss_pred cCHHHHHHHHHHHHhh-CCCEEEEECCchHH-HHHHHHHHHcCCCCeE--EEeC-c-hhhHHHHHHhCCEEEeccccCCC
Confidence 4344455555544322 24577788876654 3456666665532 12 2443 2 233445556778877665322 2
Q ss_pred chhhhHhhhcCCCEEEEecCCCCCCc
Q psy16262 131 HQPITEAAYVNIPVIAFCNTESPLRF 156 (222)
Q Consensus 131 ~~aI~Ea~~l~IP~IalvDTd~~~~~ 156 (222)
...+-||...|.|+|+- |.....+.
T Consensus 298 ~~~~~EAma~G~PvI~~-~~~~~~e~ 322 (394)
T 2jjm_A 298 GLVLLEAMACGVPCIGT-RVGGIPEV 322 (394)
T ss_dssp CHHHHHHHHTTCCEEEE-CCTTSTTT
T ss_pred chHHHHHHhcCCCEEEe-cCCChHHH
Confidence 57889999999999985 44444443
No 119
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=35.35 E-value=39 Score=27.27 Aligned_cols=88 Identities=9% Similarity=-0.035 Sum_probs=47.8
Q ss_pred HHHHHHHHcCCccc--cccccCCccchHHHh-hccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEcc
Q psy16262 86 AVLKFASYTGATPI--AGRFTPGAFTNQIQA-AFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIP 162 (222)
Q Consensus 86 ~v~~~a~~~g~~yv--~~rW~gG~LTN~i~~-~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP 162 (222)
.+++.|++.|...+ ...+-.......++. ..+.+|.||+.....+...+.++...+||+|.+ |++. ..+++.-.
T Consensus 33 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~--~~~~~V~~ 109 (289)
T 3g85_A 33 GLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLNKASLTLPIILF-NRLS--NKYSSVNV 109 (289)
T ss_dssp HHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHHHHCCCSSCEEEE-SCCC--SSSEEEEE
T ss_pred HHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCcccHHHHHhccCCCCEEEE-CCCC--CCCCEEEe
Confidence 34455666665432 122222222222222 235799999987665555666777789999875 5443 24565553
Q ss_pred CCCCCchhHHHHHHHHH
Q psy16262 163 CNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 163 ~Ndds~~si~li~~lL~ 179 (222)
|...+.......|.
T Consensus 110 ---D~~~~~~~a~~~L~ 123 (289)
T 3g85_A 110 ---DNYKMGEKASLLFA 123 (289)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH
Confidence 33455555554443
No 120
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.98 E-value=91 Score=25.02 Aligned_cols=92 Identities=11% Similarity=0.080 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhCCCcEEEEecChhh------HHHHHHHHHHcCCccccccccCCccch-----HHHh---hccCCcEEEE
Q psy16262 59 LLAARAIVAIEHPADVFVISSRPIG------QRAVLKFASYTGATPIAGRFTPGAFTN-----QIQA---AFREPRLLVV 124 (222)
Q Consensus 59 ~~a~~~i~~i~~~~~ILfv~t~~~~------~~~v~~~a~~~g~~yv~~rW~gG~LTN-----~i~~---~~~~P~lvii 124 (222)
+.++..+... ..++|.|++..... .+-.++..+..|..+.......|.++. .++. ....|+.||.
T Consensus 114 ~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 192 (291)
T 3egc_A 114 RTAVEYLIAR-GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLT 192 (291)
T ss_dssp HHHHHHHHHT-TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEE
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEE
Confidence 3444444432 45678888766422 123334445555543221112232222 1222 2357999998
Q ss_pred eCCCCCchhhhHhhhcCCC------EEEEecCC
Q psy16262 125 TDPHTDHQPITEAAYVNIP------VIAFCNTE 151 (222)
Q Consensus 125 ~dp~~d~~aI~Ea~~l~IP------~IalvDTd 151 (222)
.+...-.-+++.+...|+. ++|+=|+.
T Consensus 193 ~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 193 SSHRITEGAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp SSHHHHHHHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEEecCch
Confidence 7643333445555555543 78876664
No 121
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=34.75 E-value=1.1e+02 Score=26.64 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=34.6
Q ss_pred hccCCcEEEEeCCCCC-chhhhHhhhcCCCEEEEecCCCCC-C---cce--EEccCCCCCch
Q psy16262 115 AFREPRLLVVTDPHTD-HQPITEAAYVNIPVIAFCNTESPL-R---FVD--IAIPCNNKSPH 169 (222)
Q Consensus 115 ~~~~P~lvii~dp~~d-~~aI~Ea~~l~IP~IalvDTd~~~-~---~Id--ypIP~Ndds~~ 169 (222)
|.++.+-|.|++.... ..++++|+++|+.++.+.|...++ . .+| +++|.-+|...
T Consensus 1 M~~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~ 62 (425)
T 3vot_A 1 MTKRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEA 62 (425)
T ss_dssp -CCCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHH
T ss_pred CCCCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHH
Confidence 3455666777765444 677799999999999998764432 2 244 45554444433
No 122
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=34.74 E-value=1.4e+02 Score=23.93 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=44.7
Q ss_pred HHHHHHHHhhCCCcEEEEecChhh---H---HHHHHHHHHcCCccccccc-cCCccchH-----HHh---hccCCcEEEE
Q psy16262 60 LAARAIVAIEHPADVFVISSRPIG---Q---RAVLKFASYTGATPIAGRF-TPGAFTNQ-----IQA---AFREPRLLVV 124 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~~---~---~~v~~~a~~~g~~yv~~rW-~gG~LTN~-----i~~---~~~~P~lvii 124 (222)
.|+..+... ..++|.|++..... . +-.++..+..|..+.. .| ..|.++.. ++. ....|+.||.
T Consensus 118 ~a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 195 (290)
T 2rgy_A 118 LAAATLIEH-GHRKLAVISGPFTASDNVERLDGFFDELARHGIARDS-VPLIESDFSPEGGYAATCQLLESKAPFTGLFC 195 (290)
T ss_dssp HHHHHHHHT-TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGG-SCEEECCSSHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred HHHHHHHHC-CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCc-ccEEecCCChhHHHHHHHHHHhCCCCCcEEEE
Confidence 444544432 45688888765321 1 1223344444543322 22 23333321 112 2347999998
Q ss_pred eCCCCCchhhhHhhhcCC--C----EEEEecCC
Q psy16262 125 TDPHTDHQPITEAAYVNI--P----VIAFCNTE 151 (222)
Q Consensus 125 ~dp~~d~~aI~Ea~~l~I--P----~IalvDTd 151 (222)
.+...-.-+++.+...|+ | ++|+=|+.
T Consensus 196 ~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~~ 228 (290)
T 2rgy_A 196 ANDTMAVSALARFQQLGISVPGDVSVIGYDDDY 228 (290)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEEeCCch
Confidence 754322345555555553 4 88887765
No 123
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=34.28 E-value=52 Score=27.56 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=34.2
Q ss_pred ccCCccchH--------HHhhccCCcEEEEeC-----CCCCchhhhHhhhcCCCEEEEecCCC
Q psy16262 103 FTPGAFTNQ--------IQAAFREPRLLVVTD-----PHTDHQPITEAAYVNIPVIAFCNTES 152 (222)
Q Consensus 103 W~gG~LTN~--------i~~~~~~P~lvii~d-----p~~d~~aI~Ea~~l~IP~IalvDTd~ 152 (222)
++||.|.=. .+++...||++++=. |+.==.|-+-...+++|+||+.-+--
T Consensus 80 YIPG~LaFRE~P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVAK~~l 142 (225)
T 2w36_A 80 YIPGLLAFREGPLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVAKSRL 142 (225)
T ss_dssp CCTTCTHHHHHHHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEESSCS
T ss_pred cccchHHHhhhHHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEEeccc
Confidence 788888754 234456799998754 44434455556778999999987754
No 124
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=34.06 E-value=74 Score=26.54 Aligned_cols=75 Identities=19% Similarity=0.176 Sum_probs=45.4
Q ss_pred CCcEEEEecCh-hhHHHHHHHHHHcCCccccccc-cCCccchHHHhhccCCcEEEEeCCCC---C--------chhhhHh
Q psy16262 71 PADVFVISSRP-IGQRAVLKFASYTGATPIAGRF-TPGAFTNQIQAAFREPRLLVVTDPHT---D--------HQPITEA 137 (222)
Q Consensus 71 ~~~ILfv~t~~-~~~~~v~~~a~~~g~~yv~~rW-~gG~LTN~i~~~~~~P~lvii~dp~~---d--------~~aI~Ea 137 (222)
+.+|+++-... ..-..+....+..|.....-+. .+..+.. ....+|.||+..-.. | ...|+++
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~----~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA----EIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS----CGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC----ccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 34677775443 4455677777888876533332 2222221 124689999986321 1 3456777
Q ss_pred hhcCCCEEEEec
Q psy16262 138 AYVNIPVIAFCN 149 (222)
Q Consensus 138 ~~l~IP~IalvD 149 (222)
...++|+.|||=
T Consensus 79 ~~~~~PvlGIC~ 90 (250)
T 3m3p_A 79 VAQRVPVIGHCL 90 (250)
T ss_dssp HHHTCCEEEETH
T ss_pred HHcCCCEEEECH
Confidence 788999999983
No 125
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=34.01 E-value=1.1e+02 Score=24.76 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=32.9
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCC------CchhhhHhhhcCCCEE
Q psy16262 72 ADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHT------DHQPITEAAYVNIPVI 145 (222)
Q Consensus 72 ~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~------d~~aI~Ea~~l~IP~I 145 (222)
.+|+++.........+.+..+..|...+.-++... . ..+.. ..+|.||+..-.. .....+++...++|+.
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~~~~~-~-~~l~~--~~~dglil~Gg~~~~~~~~~~~~~~~~~~~~~Pil 100 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLETP-A-FAIKE--QGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKPVL 100 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTCC-H-HHHHH--HTCSEEEEEC---------CCCCCGGGGTSSCCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-h-HHHhh--cCCCEEEECCCCcccccccchhHHHHHHHcCCCEE
Confidence 45666655544334444444455544322111111 0 11111 3467777765211 1223445555677777
Q ss_pred EEec
Q psy16262 146 AFCN 149 (222)
Q Consensus 146 alvD 149 (222)
|+|=
T Consensus 101 GIC~ 104 (218)
T 2vpi_A 101 GICY 104 (218)
T ss_dssp EETH
T ss_pred EEcH
Confidence 7763
No 126
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.99 E-value=1.8e+02 Score=23.11 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=46.7
Q ss_pred HHHHHHHHhhCCCcEEEEecChh------hHHHHHHHHHHcCCccccccc-cCCccchH-----HHhh---ccCCcEEEE
Q psy16262 60 LAARAIVAIEHPADVFVISSRPI------GQRAVLKFASYTGATPIAGRF-TPGAFTNQ-----IQAA---FREPRLLVV 124 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~------~~~~v~~~a~~~g~~yv~~rW-~gG~LTN~-----i~~~---~~~P~lvii 124 (222)
.++..+... ..++|.|++.... ..+..++..+..|.... ..| ..|.++.. ++.+ ...|+.||.
T Consensus 116 ~~~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 193 (289)
T 1dbq_A 116 MAGRYLIER-GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVP-ESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC 193 (289)
T ss_dssp HHHHHHHHT-TCCSEEEECCC------CHHHHHHHHHHHHTTCCCC-GGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred HHHHHHHHC-CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCC-hHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE
Confidence 455545433 4568888876532 12234445555554322 122 23333321 2222 247999998
Q ss_pred eCCCCCchhhhHhhhcCC--C----EEEEecCCC
Q psy16262 125 TDPHTDHQPITEAAYVNI--P----VIAFCNTES 152 (222)
Q Consensus 125 ~dp~~d~~aI~Ea~~l~I--P----~IalvDTd~ 152 (222)
.+...-..+++.+...|+ | ++|+=|+..
T Consensus 194 ~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~ 227 (289)
T 1dbq_A 194 GGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRN 227 (289)
T ss_dssp SCHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred CCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchH
Confidence 764333345666666654 4 888877653
No 127
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=33.86 E-value=83 Score=25.38 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=36.6
Q ss_pred cCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCC-CCCC-----cceEEccCCCCCchhHHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTE-SPLR-----FVDIAIPCNNKSPHSIGLMWWLLARE 181 (222)
Q Consensus 117 ~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd-~~~~-----~IdypIP~Ndds~~si~li~~lL~~a 181 (222)
+.+|.||+.....+ ..+++++...+||+|.+ |++ .+.. .+++.-. |...+-+.....|.+.
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~~~ 124 (306)
T 8abp_A 56 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV-DDQFVNAKGKPMDTVPLVML---AATKIGERQGQELYKE 124 (306)
T ss_dssp TTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEE-SSCCBCTTSCBCTTSCEEEE---CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEe-CCCCCCccccccccccEEec---ChhHHHHHHHHHHHHH
Confidence 56999998865444 34588999999999976 432 2221 3444442 4445555445555443
No 128
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=33.63 E-value=98 Score=25.60 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=36.7
Q ss_pred EEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 76 VISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 76 fv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
+++..+. +.+++.++..+..-| +|.| .. ..+......-|+++... ....+-||...|+|+|+.
T Consensus 218 i~G~~~~--~~l~~~~~~~~~~~v--~~~g-~~-~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~ 280 (364)
T 1f0k_A 218 QSGKGSQ--QSVEQAYAEAGQPQH--KVTE-FI-DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFV 280 (364)
T ss_dssp ECCTTCH--HHHHHHHHHTTCTTS--EEES-CC-SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEEC
T ss_pred EcCCchH--HHHHHHHhhcCCCce--EEec-ch-hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEe
Confidence 3454442 345555555553211 2333 22 33334445567766543 278899999999999997
No 129
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=33.51 E-value=46 Score=27.68 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=22.7
Q ss_pred CcEEEEeCCCCCc--hhhhHhhhcCCCEEEEe
Q psy16262 119 PRLLVVTDPHTDH--QPITEAAYVNIPVIAFC 148 (222)
Q Consensus 119 P~lvii~dp~~d~--~aI~Ea~~l~IP~Ialv 148 (222)
+|.||+.....+. ..++++...+||+|.+-
T Consensus 64 vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 95 (332)
T 2rjo_A 64 NLVLNVDPNDSADARVIVEACSKAGAYVTTIW 95 (332)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTCEEEEES
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 9999987654432 56788888899999763
No 130
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=33.48 E-value=1.6e+02 Score=23.61 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=58.4
Q ss_pred HHHHHHHHHhhCCCcEEEEecChhh-----HHHHHHHHHHcCCccccccccCCccchH-----HHh---hccCCcEEEEe
Q psy16262 59 LLAARAIVAIEHPADVFVISSRPIG-----QRAVLKFASYTGATPIAGRFTPGAFTNQ-----IQA---AFREPRLLVVT 125 (222)
Q Consensus 59 ~~a~~~i~~i~~~~~ILfv~t~~~~-----~~~v~~~a~~~g~~yv~~rW~gG~LTN~-----i~~---~~~~P~lvii~ 125 (222)
+.|+..+... ..++|.|++..... .+-.++..+..|..+.. .++.|..+-. ++. ....|+.||..
T Consensus 115 ~~a~~~L~~~-G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 192 (289)
T 3k9c_A 115 TLAVDHLTEL-GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASA-TVVTGGTTETEGAEGMHTLLEMPTPPTAVVAF 192 (289)
T ss_dssp HHHHHHHHHT-TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE-EEECCCSSHHHHHHHHHHHHTSSSCCSEEEES
T ss_pred HHHHHHHHHC-CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCc-cEEECCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3455555442 44678888765421 12333445555655322 3444544432 122 23579999987
Q ss_pred CCCCCchhhhHhhhcCC--C----EEEEecCCC----CCCcceEEccCCCCCchhHHHHH
Q psy16262 126 DPHTDHQPITEAAYVNI--P----VIAFCNTES----PLRFVDIAIPCNNKSPHSIGLMW 175 (222)
Q Consensus 126 dp~~d~~aI~Ea~~l~I--P----~IalvDTd~----~~~~IdypIP~Ndds~~si~li~ 175 (222)
+...-.-+++.+...|+ | +||+=|+.. .|...++-.|.-.-+..++.+++
T Consensus 193 ~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 252 (289)
T 3k9c_A 193 NDRCATGVLDLLVRSGRDVPADISVVGYDDSRLARIPHVQMTTISQDATHMAEAAVDGAL 252 (289)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTTTTCTTTCCEEEECCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCCCCceEEEEECCHHHHhcCCCCcceEecCHHHHHHHHHHHHH
Confidence 64322344555555554 3 888877642 23344555444433444444433
No 131
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=33.47 E-value=32 Score=27.02 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=25.3
Q ss_pred cCCcEEEEeCCCC------------CchhhhHhhhcCCCEEEEecC
Q psy16262 117 REPRLLVVTDPHT------------DHQPITEAAYVNIPVIAFCNT 150 (222)
Q Consensus 117 ~~P~lvii~dp~~------------d~~aI~Ea~~l~IP~IalvDT 150 (222)
..+|.||+..+.. ...+|+++...++|+.|+|=-
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G 86 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLG 86 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChh
Confidence 5678888876422 346788888889999999853
No 132
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=33.27 E-value=28 Score=28.44 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=41.6
Q ss_pred EEEEecCh-hhHHHHHHHHHHcCCcccc-ccccCCccchHHHhhccCCcEEEEeC-CCC---------------Cchhhh
Q psy16262 74 VFVISSRP-IGQRAVLKFASYTGATPIA-GRFTPGAFTNQIQAAFREPRLLVVTD-PHT---------------DHQPIT 135 (222)
Q Consensus 74 ILfv~t~~-~~~~~v~~~a~~~g~~yv~-~rW~gG~LTN~i~~~~~~P~lvii~d-p~~---------------d~~aI~ 135 (222)
|+++-..+ ..-..+...++..|..... .-+.+..+.. ....+|.||+.. |.. ...+|+
T Consensus 3 i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~----~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i~ 78 (236)
T 3l7n_A 3 IHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK----DIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLIQ 78 (236)
T ss_dssp EEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS----CGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHHH
T ss_pred EEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC----CccccCEEEECCCCCCcccccccCcccchHHHHHHHH
Confidence 44444333 3445666777777765422 2233332221 124689999996 221 235677
Q ss_pred HhhhcCCCEEEEe
Q psy16262 136 EAAYVNIPVIAFC 148 (222)
Q Consensus 136 Ea~~l~IP~Ialv 148 (222)
++...++|+.|+|
T Consensus 79 ~~~~~~~PvLGIC 91 (236)
T 3l7n_A 79 KAAKSEKIIVGVC 91 (236)
T ss_dssp HHHHTTCEEEEET
T ss_pred HHHHcCCCEEEEc
Confidence 8888899999998
No 133
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=33.21 E-value=2e+02 Score=23.50 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchH-HHhhccCCcEEEEeCC------
Q psy16262 55 WEKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ-IQAAFREPRLLVVTDP------ 127 (222)
Q Consensus 55 ~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~-i~~~~~~P~lvii~dp------ 127 (222)
...+.+|+..+ +-+++++|..+.. +.++++++..+ .-| .| -|.+.+. +......-|++++...
T Consensus 177 ~~~li~a~~~~-----~~~l~i~G~g~~~-~~l~~~~~~~~-~~v--~~-~g~~~~~~l~~~~~~adv~v~ps~~~~~~~ 246 (342)
T 2iuy_A 177 ALEAAAFAHAC-----GRRLVLAGPAWEP-EYFDEITRRYG-STV--EP-IGEVGGERRLDLLASAHAVLAMSQAVTGPW 246 (342)
T ss_dssp HHHHHHHHHHH-----TCCEEEESCCCCH-HHHHHHHHHHT-TTE--EE-CCCCCHHHHHHHHHHCSEEEECCCCCCCTT
T ss_pred HHHHHHHHHhc-----CcEEEEEeCcccH-HHHHHHHHHhC-CCE--EE-eccCCHHHHHHHHHhCCEEEECCccccccc
Confidence 34444554433 4567888876643 34556666665 211 23 3566663 3455566788776554
Q ss_pred -----CCCchhhhHhhhcCCCEEEE
Q psy16262 128 -----HTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 128 -----~~d~~aI~Ea~~l~IP~Ial 147 (222)
..-...+-||...|+|+|+-
T Consensus 247 ~~~~~E~~~~~~~EAma~G~PvI~s 271 (342)
T 2iuy_A 247 GGIWCEPGATVVSEAAVSGTPVVGT 271 (342)
T ss_dssp CSCCCCCCCHHHHHHHHTTCCEEEC
T ss_pred ccccccCccHHHHHHHhcCCCEEEc
Confidence 12256799999999999984
No 134
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.85 E-value=1.6e+02 Score=24.28 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=55.7
Q ss_pred HHHHHHHHhhCCCcEEEEecChhh------HHHHHHHHHHcCCccccccccCCccchH-----HH---hhccCCcEEEEe
Q psy16262 60 LAARAIVAIEHPADVFVISSRPIG------QRAVLKFASYTGATPIAGRFTPGAFTNQ-----IQ---AAFREPRLLVVT 125 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~~------~~~v~~~a~~~g~~yv~~rW~gG~LTN~-----i~---~~~~~P~lvii~ 125 (222)
.|+..+... ..++|.|++..... .+-..+..+..|..+.......|.++-. +. .....|+.||..
T Consensus 171 ~a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 249 (338)
T 3dbi_A 171 NAVAELINA-GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS 249 (338)
T ss_dssp HHHHHHHHT-TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred HHHHHHHHC-CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 344444332 45678888765322 1223344555565433222234444432 11 223579999987
Q ss_pred CCCCCchhhhHhhhcCC--C----EEEEecCC----CCCCcceEEccCCCCCchhHHHH
Q psy16262 126 DPHTDHQPITEAAYVNI--P----VIAFCNTE----SPLRFVDIAIPCNNKSPHSIGLM 174 (222)
Q Consensus 126 dp~~d~~aI~Ea~~l~I--P----~IalvDTd----~~~~~IdypIP~Ndds~~si~li 174 (222)
+...-.-+++.+...|+ | +||+=|+. ..|..-++-.|.-.=+..++.++
T Consensus 250 nd~~A~g~~~al~~~G~~vP~di~vvg~D~~~~~~~~~p~lttv~~~~~~~g~~a~~~l 308 (338)
T 3dbi_A 250 NDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMIQEIIGRL 308 (338)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEEESCCTTGGGSSSCCEEEECCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCCCCCeEEEEECChHHHhhcCCcceEEecCHHHHHHHHHHHH
Confidence 63222344555555554 3 88886654 23344444444433333444433
No 135
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=32.55 E-value=12 Score=30.73 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=35.9
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCC-cceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLR-FVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~-~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+. .++++...+||+|.+ |++.+.. .+++.-. |...+.......|
T Consensus 68 ~~~vdGiIi~~~~~~~-~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L 126 (301)
T 3miz_A 68 SHRIDGVLYVTMYRRI-VDPESGDVSIPTVMI-NCRPQTRELLPSIEP---DDYQGARDLTRYL 126 (301)
T ss_dssp HTTCSEEEEEEEEEEE-CCCCCTTCCCCEEEE-EEECSSTTSSCEEEE---CHHHHHHHHHHHH
T ss_pred hCCCCEEEEecCCccH-HHHHHHhCCCCEEEE-CCCCCCCCCCCEEee---ChHHHHHHHHHHH
Confidence 3679999988654444 778888899999987 4433322 4555543 3344444444444
No 136
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=32.52 E-value=80 Score=22.62 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=30.9
Q ss_pred HHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCcccccccc-CCc
Q psy16262 63 RAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFT-PGA 107 (222)
Q Consensus 63 ~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~-gG~ 107 (222)
..+..+..+..+.++.+.+...+-|.++|+..|..++...-. +|.
T Consensus 45 kaL~~l~~Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e~~~~g~ 90 (98)
T 1jdq_A 45 RALQNMKPGEILEVWIDYPMSKERIPETVKKLGHEVLEIEEVGPSE 90 (98)
T ss_dssp HHHHTCCTTCEEEEEESSCTHHHHHHHHHHHSSCCEEEEEECSSSC
T ss_pred HHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEecCCE
Confidence 334445455556678888888888999999999877654434 354
No 137
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=32.44 E-value=1e+02 Score=24.99 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=36.0
Q ss_pred cCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCCC----cceEEccCCCCCchhHHHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPLR----FVDIAIPCNNKSPHSIGLMWWLLAR 180 (222)
Q Consensus 117 ~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~~----~IdypIP~Ndds~~si~li~~lL~~ 180 (222)
+.+|.||+.....+ ...++++...+||+|.+ |+..+.. .+++.- .|...+.......|.+
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~~~~V~---~D~~~~g~~a~~~L~~ 122 (306)
T 2vk2_A 57 QGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL-DRSIDVKDKSLYMTTVT---ADNILEGKLIGDWLVK 122 (306)
T ss_dssp HTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEE-SSCCCCSCGGGSSEEEE---CCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEe-cCCCCCCCccceEEEEe---cCHHHHHHHHHHHHHH
Confidence 57999988765443 36788888899999875 5543322 244443 2344444444444433
No 138
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=32.14 E-value=1.2e+02 Score=24.13 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=32.3
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhh-cCCCEEEEecCCCC-CCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAY-VNIPVIAFCNTESP-LRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~-l~IP~IalvDTd~~-~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+...+....+ .+||+|.+ |+..+ ....++.-+ |...+.......|
T Consensus 61 ~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~-~~~~~~~~~~~~V~~---d~~~~~~~~~~~L 121 (289)
T 1dbq_A 61 QKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM-DWGEAKADFTDAVID---NAFEGGYMAGRYL 121 (289)
T ss_dssp HTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEE-ECSSCCSSSCEEEEE---CHHHHHHHHHHHH
T ss_pred hCCCCEEEEEeccCCHHHHHHHHhccCCCEEEE-ccCCCccCcCCEEEe---CcHHHHHHHHHHH
Confidence 357999998876544334444444 69999986 44332 222444443 3334444444434
No 139
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=31.94 E-value=1.3e+02 Score=20.97 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=42.7
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhh---ccCCcEEEEeCCCCC---chhhhHhhh--cCC
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAA---FREPRLLVVTDPHTD---HQPITEAAY--VNI 142 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~---~~~P~lvii~dp~~d---~~aI~Ea~~--l~I 142 (222)
..+||++...+.....+.+..+..|.. +. + -......+... ...||+|++--...+ ...+++.+. -++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~-v~--~-~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ 78 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNE-VL--T-ASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHM 78 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCE-EE--E-ESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCce-EE--E-eCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 346888888888777777777766532 11 1 11111112211 357898776432222 234444443 368
Q ss_pred CEEEEecCCC
Q psy16262 143 PVIAFCNTES 152 (222)
Q Consensus 143 P~IalvDTd~ 152 (222)
|+|.+.+...
T Consensus 79 ~ii~ls~~~~ 88 (143)
T 3jte_A 79 AVIILTGHGD 88 (143)
T ss_dssp EEEEEECTTC
T ss_pred eEEEEECCCC
Confidence 8988877654
No 140
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=31.80 E-value=47 Score=26.80 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=27.1
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEc
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAI 161 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypI 161 (222)
.+.+|.||+.....+...++++ .+||+|.+ |+..+...+++.-
T Consensus 61 ~~~vdgiI~~~~~~~~~~~~~l--~~iPvV~~-~~~~~~~~~~~V~ 103 (288)
T 2qu7_A 61 SQNVSAIILVPVKSKFQMKREW--LKIPIMTL-DRELESTSLPSIT 103 (288)
T ss_dssp HTTEEEEEECCSSSCCCCCGGG--GGSCEEEE-SCCCSSCCCCEEE
T ss_pred HcCccEEEEecCCCChHHHHHh--cCCCEEEE-ecccCCCCCCEEE
Confidence 3579999888655444566766 79999976 5443322344443
No 141
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.66 E-value=1.2e+02 Score=20.66 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=44.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchH---HHhhc--------cCCcEEEEeC--CCCC-chhhhH
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ---IQAAF--------REPRLLVVTD--PHTD-HQPITE 136 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~---i~~~~--------~~P~lvii~d--p~~d-~~aI~E 136 (222)
+.+||++...+.....+.+..+..|..+.. ...++. +.... ..||+|++-- +..+ ...+++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v-----~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~ 76 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEV-----VTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAE 76 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEE-----EEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceE-----EEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHH
Confidence 457889998888888777777666542211 122222 22222 4688776532 2212 344555
Q ss_pred hhh----cCCCEEEEecCCC
Q psy16262 137 AAY----VNIPVIAFCNTES 152 (222)
Q Consensus 137 a~~----l~IP~IalvDTd~ 152 (222)
.+. -++|+|.+.+...
T Consensus 77 l~~~~~~~~~pii~ls~~~~ 96 (140)
T 1k68_A 77 IKSDPTLKRIPVVVLSTSIN 96 (140)
T ss_dssp HHHSTTGGGSCEEEEESCCC
T ss_pred HHcCcccccccEEEEecCCc
Confidence 444 4699999988764
No 142
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=31.65 E-value=49 Score=26.92 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhCCCcEEEEecChhh------HHHHHHHHHHcCCccc-----cc---cccCCccc--hHHHh---hccCC
Q psy16262 59 LLAARAIVAIEHPADVFVISSRPIG------QRAVLKFASYTGATPI-----AG---RFTPGAFT--NQIQA---AFREP 119 (222)
Q Consensus 59 ~~a~~~i~~i~~~~~ILfv~t~~~~------~~~v~~~a~~~g~~yv-----~~---rW~gG~LT--N~i~~---~~~~P 119 (222)
+.|+..+.. ...++|.|++..... .+-.++..+..|..+. .+ .|-...-. ..+.. ....|
T Consensus 120 ~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (301)
T 3miz_A 120 RDLTRYLLE-RGHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRP 198 (301)
T ss_dssp HHHHHHHHT-TTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHH-cCCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCC
Confidence 345554443 234678888765432 1233344555565432 22 23211111 22222 23579
Q ss_pred cEEEEeCCCCCchhhhHhhhcCCC------EEEEecCC-----CCCCcceEEccCCCCCchhHHHHH
Q psy16262 120 RLLVVTDPHTDHQPITEAAYVNIP------VIAFCNTE-----SPLRFVDIAIPCNNKSPHSIGLMW 175 (222)
Q Consensus 120 ~lvii~dp~~d~~aI~Ea~~l~IP------~IalvDTd-----~~~~~IdypIP~Ndds~~si~li~ 175 (222)
+.||..+...-.-+++.+...|+. +||+=|+. ..|...++-.|.-.-+..++.+++
T Consensus 199 ~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~~~~~~~~~~p~lttv~~~~~~~g~~av~~l~ 265 (301)
T 3miz_A 199 TAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFDDFRTVTMALKPELTTAALPYYDLGREGAKWLN 265 (301)
T ss_dssp SEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSBCCHHHHTTSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeCCcHHHhccCCCCeeEEecCHHHHHHHHHHHHH
Confidence 999987643334556666666654 77777665 344455555554443444444333
No 143
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=31.20 E-value=48 Score=30.79 Aligned_cols=74 Identities=8% Similarity=0.067 Sum_probs=44.9
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCC------CchhhhHhhhcCCCE
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHT------DHQPITEAAYVNIPV 144 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~------d~~aI~Ea~~l~IP~ 144 (222)
+.+|+++....+....+.+..+..|.+...-.|. -.. ..+.. ..||.||+..-.. ...+.+++...++|+
T Consensus 10 ~~~I~IlD~g~~~~~~i~r~lr~~Gv~~~i~p~~-~~~-~~i~~--~~~dgIILsGGp~sv~~~~~~~~~~~~~~~~~Pv 85 (527)
T 3tqi_A 10 QHRILILDFGSQYAQLIARRVREIGVYCELMPCD-IDE-ETIRD--FNPHGIILSGGPETVTLSHTLRAPAFIFEIGCPV 85 (527)
T ss_dssp CSEEEEEECSCTTHHHHHHHHHHHTCEEEEEETT-CCS-SSSTT--TCCSEEEECCCCC---------CCCSTTTSSSCE
T ss_pred CCeEEEEECCCccHHHHHHHHHHCCCeEEEEECC-CCH-HHHHh--cCCCEEEECCcCcccccCCChhhHHHHHhcCCCE
Confidence 4579999888877677777777788765432231 100 01111 2689999886321 134456666778888
Q ss_pred EEEe
Q psy16262 145 IAFC 148 (222)
Q Consensus 145 Ialv 148 (222)
.|+|
T Consensus 86 LGIC 89 (527)
T 3tqi_A 86 LGIC 89 (527)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8887
No 144
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=31.10 E-value=83 Score=26.59 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=40.8
Q ss_pred cccCCccchH--------HHhhccCCcEEEEeC-----CCCCchhhhHhhhcCCCEEEEecCCCCCCcceEEccCCCC
Q psy16262 102 RFTPGAFTNQ--------IQAAFREPRLLVVTD-----PHTDHQPITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNK 166 (222)
Q Consensus 102 rW~gG~LTN~--------i~~~~~~P~lvii~d-----p~~d~~aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndd 166 (222)
=++||.|.=. .+++..+||+++|=. |+.==.|-+=.-.+++||||+.-+-- ..++.-|++..
T Consensus 83 PYIPG~LaFRE~P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVAKs~L---~g~~~~~~~~~ 157 (237)
T 3goc_A 83 PYVPGLLAFREIPTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVAKNPF---TFSYEDPGAPR 157 (237)
T ss_dssp CCCTTCGGGGTHHHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEESSCT---TCEECCCCSST
T ss_pred CCCcchhhhhhHHHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeeecccc---ccccccccccC
Confidence 3788888764 234556899998764 44445566666778999999988743 23454455433
No 145
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=31.07 E-value=1.4e+02 Score=23.70 Aligned_cols=90 Identities=11% Similarity=0.119 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCcEEEEecChh---hH---HHHHHHHHHcCCccccccc-cCCccchH-----HHhh---ccCCcEEEE
Q psy16262 60 LAARAIVAIEHPADVFVISSRPI---GQ---RAVLKFASYTGATPIAGRF-TPGAFTNQ-----IQAA---FREPRLLVV 124 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~---~~---~~v~~~a~~~g~~yv~~rW-~gG~LTN~-----i~~~---~~~P~lvii 124 (222)
.++..+... ..++|.|++.... .. +-..+..+..|..... .| ..|.++-. ++.+ ...||.||+
T Consensus 129 ~a~~~l~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~ 206 (296)
T 3brq_A 129 NAVAELINA-GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNE-KLIANGKWTPASGAEGVEMLLERGAKFSALVA 206 (296)
T ss_dssp HHHHHHHHT-TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCG-GGEECCCSSHHHHHHHHHHHHTC--CCSEEEE
T ss_pred HHHHHHHHC-CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCCh-hhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE
Confidence 444444432 4578988876532 11 2223344444543322 23 23333221 2222 246899998
Q ss_pred eCCCCCchhhhHhhhcC--CC----EEEEecCC
Q psy16262 125 TDPHTDHQPITEAAYVN--IP----VIAFCNTE 151 (222)
Q Consensus 125 ~dp~~d~~aI~Ea~~l~--IP----~IalvDTd 151 (222)
.+...-.-+++.+...| +| ++|+=|+.
T Consensus 207 ~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 239 (296)
T 3brq_A 207 SNDDMAIGAMKALHERGVAVPEQVSVIGFDDIA 239 (296)
T ss_dssp SSHHHHHHHHHHHHHHTCCTTTTCEEEEESCCT
T ss_pred CChHHHHHHHHHHHHcCCCCCCceEEEeecCch
Confidence 76433334555555555 45 88877664
No 146
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=30.98 E-value=1.6e+02 Score=24.32 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCcEEEEecCh-hhH---HHHHHHHHHcCCccccccccC-C--ccchHHHhh-ccCCcEEEEe-CCCCCc
Q psy16262 61 AARAIVAIEHPADVFVISSRP-IGQ---RAVLKFASYTGATPIAGRFTP-G--AFTNQIQAA-FREPRLLVVT-DPHTDH 131 (222)
Q Consensus 61 a~~~i~~i~~~~~ILfv~t~~-~~~---~~v~~~a~~~g~~yv~~rW~g-G--~LTN~i~~~-~~~P~lvii~-dp~~d~ 131 (222)
++..+... ..++|.++.... .++ +..++..++.|...+...+.+ | .++..++++ ...||.||+. +...-.
T Consensus 142 ~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~ 220 (375)
T 4evq_A 142 TGDAMIKA-GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGAL 220 (375)
T ss_dssp HHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHH
T ss_pred HHHHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHH
Confidence 34444433 456777776543 332 344455666677655544443 2 334444433 2479999984 443334
Q ss_pred hhhhHhhhcC--CCEEEE
Q psy16262 132 QPITEAAYVN--IPVIAF 147 (222)
Q Consensus 132 ~aI~Ea~~l~--IP~Ial 147 (222)
.++++++..| +|+++.
T Consensus 221 ~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 221 KFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp HHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHcCCCceEEec
Confidence 5677777766 788875
No 147
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=30.74 E-value=96 Score=24.77 Aligned_cols=117 Identities=9% Similarity=-0.100 Sum_probs=58.5
Q ss_pred HHHHHHHHH-hhCCCcEEEEecChhh------HHHHHHHHHHc-CCccccccccC-CccchH-----HH---hhcc---C
Q psy16262 59 LLAARAIVA-IEHPADVFVISSRPIG------QRAVLKFASYT-GATPIAGRFTP-GAFTNQ-----IQ---AAFR---E 118 (222)
Q Consensus 59 ~~a~~~i~~-i~~~~~ILfv~t~~~~------~~~v~~~a~~~-g~~yv~~rW~g-G~LTN~-----i~---~~~~---~ 118 (222)
+.++..+.. ....++|.|++..... .+..++..+.. |...+...|+. |..+-. ++ .... .
T Consensus 112 ~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (291)
T 3l49_A 112 AELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGD 191 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTS
T ss_pred HHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCC
Confidence 345555554 3556789888755322 12233344444 33334444432 222211 11 1223 7
Q ss_pred CcEEEEeCCCCCchhhhHhhhcC---CCEEEEecCCC---------CCCcceEEccCCCCCchhHHHHH
Q psy16262 119 PRLLVVTDPHTDHQPITEAAYVN---IPVIAFCNTES---------PLRFVDIAIPCNNKSPHSIGLMW 175 (222)
Q Consensus 119 P~lvii~dp~~d~~aI~Ea~~l~---IP~IalvDTd~---------~~~~IdypIP~Ndds~~si~li~ 175 (222)
|+.||..+...-.-+++.+...| +.++|+=|+.. .|...++-.|.-.-+..++.+++
T Consensus 192 ~~ai~~~~d~~a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~lttv~~~~~~~g~~av~~l~ 260 (291)
T 3l49_A 192 VGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAGAVAAQQPSEIGKLAVQNVA 260 (291)
T ss_dssp CCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCEEEEEECCHHHHHHHHHHHHH
T ss_pred cCEEEECCCchHHHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCeEEEEecCHHHHHHHHHHHHH
Confidence 89998776332233445555554 58898877753 34455555544444444444443
No 148
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=30.68 E-value=1.6e+02 Score=25.56 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEecChh-hHHHHHHHHHHcCCccccccccCCccchH-HHhhccCCcEEEEeCCC-C
Q psy16262 53 RTWEKLLLAARAIVAIEHPADVFVISSRPI-GQRAVLKFASYTGATPIAGRFTPGAFTNQ-IQAAFREPRLLVVTDPH-T 129 (222)
Q Consensus 53 ~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~-~~~~v~~~a~~~g~~yv~~rW~gG~LTN~-i~~~~~~P~lvii~dp~-~ 129 (222)
+=...|..|+..+.. .+-+++++|..+. ..+.+++.++..+... .+..|. .+. +...+..-|++++.... .
T Consensus 305 Kg~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~~~~~~~adv~v~pS~~E~ 378 (485)
T 2qzs_A 305 KGLDLVLEALPGLLE--QGGQLALLGAGDPVLQEGFLAAAAEYPGQV---GVQIGY-HEAFSHRIMGGADVILVPSRFEP 378 (485)
T ss_dssp GCHHHHHHHHHHHHH--TTCEEEEEEEECHHHHHHHHHHHHHSTTTE---EEEESC-CHHHHHHHHHHCSEEEECCSCCS
T ss_pred cCHHHHHHHHHHHhh--CCcEEEEEeCCchHHHHHHHHHHHhCCCcE---EEeCCC-CHHHHHHHHHhCCEEEECCccCC
Confidence 333445555544432 3556778887652 4456677777765221 134555 443 34556667877665432 2
Q ss_pred CchhhhHhhhcCCCEEEE
Q psy16262 130 DHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 130 d~~aI~Ea~~l~IP~Ial 147 (222)
--.++-||...|.|+|+-
T Consensus 379 ~g~~~lEAma~G~PvI~s 396 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVR 396 (485)
T ss_dssp SCSHHHHHHHHTCEEEEE
T ss_pred CcHHHHHHHHCCCCEEEC
Confidence 256789999999999996
No 149
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=30.60 E-value=1.4e+02 Score=21.43 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=36.9
Q ss_pred cEEEEecChhhHHHHHHHHHHcCCccccccccCCccchH------HHhhccCCcEEEEeCC--CCC-chhhhHhhh--cC
Q psy16262 73 DVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ------IQAAFREPRLLVVTDP--HTD-HQPITEAAY--VN 141 (222)
Q Consensus 73 ~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~------i~~~~~~P~lvii~dp--~~d-~~aI~Ea~~--l~ 141 (222)
+||++.........+.+..+..|...+ +...+. +......||+||+--. ..+ ...+++.+. -+
T Consensus 38 ~Ilivdd~~~~~~~l~~~L~~~g~~v~------~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~ 111 (157)
T 3hzh_A 38 NVLIVDDSVFTVKQLTQIFTSEGFNII------DTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKN 111 (157)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEE------EEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTT
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE------EEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCC
Confidence 677888777777766666665543211 122222 1111125777664321 112 233333333 36
Q ss_pred CCEEEEecCC
Q psy16262 142 IPVIAFCNTE 151 (222)
Q Consensus 142 IP~IalvDTd 151 (222)
+|+|.+.+..
T Consensus 112 ~~ii~ls~~~ 121 (157)
T 3hzh_A 112 ARVIMISALG 121 (157)
T ss_dssp CCEEEEESCC
T ss_pred CcEEEEeccC
Confidence 8888877654
No 150
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=30.32 E-value=68 Score=26.36 Aligned_cols=115 Identities=9% Similarity=0.010 Sum_probs=59.8
Q ss_pred HHHHHHHHhh-CCCcEEEEecChh--hH---HHHHHHHHHcCCccccccccCCc--cchHHHhhccCCcEEEEeCCC---
Q psy16262 60 LAARAIVAIE-HPADVFVISSRPI--GQ---RAVLKFASYTGATPIAGRFTPGA--FTNQIQAAFREPRLLVVTDPH--- 128 (222)
Q Consensus 60 ~a~~~i~~i~-~~~~ILfv~t~~~--~~---~~v~~~a~~~g~~yv~~rW~gG~--LTN~i~~~~~~P~lvii~dp~--- 128 (222)
.++..+.... ..++|.|++.... .+ +-.++.++..|..+.. .|+... +...++.+...||.||+.+-.
T Consensus 128 ~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~-~~~~~~~~~~~~~~~l~~~~dai~~~~D~~a~ 206 (302)
T 2qh8_A 128 QHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVE-ATALKSADVQSATQAIAEKSDVIYALIDNTVA 206 (302)
T ss_dssp HHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEE-EECSSGGGHHHHHHHHGGGCSEEEECSCHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEE-EecCChHHHHHHHHHHhccCCEEEECCcHhHH
Confidence 3344444432 4568888876532 21 3344556666765432 343211 112233445679999987521
Q ss_pred CCchhhh-HhhhcCCCEEEEecCCC-CCCcceEEccCCCCCchhHHHHH
Q psy16262 129 TDHQPIT-EAAYVNIPVIAFCNTES-PLRFVDIAIPCNNKSPHSIGLMW 175 (222)
Q Consensus 129 ~d~~aI~-Ea~~l~IP~IalvDTd~-~~~~IdypIP~Ndds~~si~li~ 175 (222)
.-..+++ .+...++|++|+-|... .+.+.++-.|.-.-+..+..+++
T Consensus 207 g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~l~ 255 (302)
T 2qh8_A 207 SAIEGMIVAANQAKTPVFGAATSYVERGAIASLGFDYYQIGVQTADYVA 255 (302)
T ss_dssp TTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEECCHHHHhCCcEEEEeCCHHHHHHHHHHHHH
Confidence 0112233 34557999999866431 35556666555444445544444
No 151
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=30.21 E-value=1.5e+02 Score=21.05 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=43.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHh----------hccCCcEEEEeC--CCCC-chhhhHh
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQA----------AFREPRLLVVTD--PHTD-HQPITEA 137 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~----------~~~~P~lvii~d--p~~d-~~aI~Ea 137 (222)
+-+||+|...+.....+.+..+..|..+.......| .-.+.. ....||+|++=- |..+ ...+++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~--~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDG--TSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSH--HHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCH--HHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 347888888888888788777776653222111111 111111 135688776532 2222 3444444
Q ss_pred hh----cCCCEEEEecCCC
Q psy16262 138 AY----VNIPVIAFCNTES 152 (222)
Q Consensus 138 ~~----l~IP~IalvDTd~ 152 (222)
+. .++|+|.+.+...
T Consensus 82 r~~~~~~~~pii~~t~~~~ 100 (152)
T 3heb_A 82 KENPHTRRSPVVILTTTDD 100 (152)
T ss_dssp HHSTTTTTSCEEEEESCCC
T ss_pred HhcccccCCCEEEEecCCC
Confidence 43 4789999987654
No 152
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=29.93 E-value=1.4e+02 Score=25.95 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEecChh-hHHHHHHHHHHcCCccccccccCCccchH-HHhhccCCcEEEEeCCCC-Cc
Q psy16262 55 WEKLLLAARAIVAIEHPADVFVISSRPI-GQRAVLKFASYTGATPIAGRFTPGAFTNQ-IQAAFREPRLLVVTDPHT-DH 131 (222)
Q Consensus 55 ~~~L~~a~~~i~~i~~~~~ILfv~t~~~-~~~~v~~~a~~~g~~yv~~rW~gG~LTN~-i~~~~~~P~lvii~dp~~-d~ 131 (222)
...|..|+..+.. .+-+++++|..+. ..+.+++.++..+... .+..|. ... +......-|++++....+ --
T Consensus 306 ~~~li~a~~~l~~--~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v---~~~~g~-~~~~~~~~~~~adv~v~pS~~E~~~ 379 (485)
T 1rzu_A 306 IDLMAEAVDEIVS--LGGRLVVLGAGDVALEGALLAAASRHHGRV---GVAIGY-NEPLSHLMQAGCDAIIIPSRFEPCG 379 (485)
T ss_dssp HHHHHTTHHHHHH--TTCEEEEEECBCHHHHHHHHHHHHHTTTTE---EEEESC-CHHHHHHHHHHCSEEEECCSCCSSC
T ss_pred HHHHHHHHHHHHh--cCceEEEEeCCchHHHHHHHHHHHhCCCcE---EEecCC-CHHHHHHHHhcCCEEEECcccCCCC
Confidence 3444455444432 3557788887753 4556777777765221 134555 333 345566678777654322 24
Q ss_pred hhhhHhhhcCCCEEEE
Q psy16262 132 QPITEAAYVNIPVIAF 147 (222)
Q Consensus 132 ~aI~Ea~~l~IP~Ial 147 (222)
.++-||...|.|+|+-
T Consensus 380 ~~~lEAma~G~PvI~s 395 (485)
T 1rzu_A 380 LTQLYALRYGCIPVVA 395 (485)
T ss_dssp SHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHCCCCEEEe
Confidence 6799999999999993
No 153
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=29.82 E-value=73 Score=25.68 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=24.2
Q ss_pred cCCcEEEEeCCCCCc--hhhhHhhhcCCCEEEEecCC
Q psy16262 117 REPRLLVVTDPHTDH--QPITEAAYVNIPVIAFCNTE 151 (222)
Q Consensus 117 ~~P~lvii~dp~~d~--~aI~Ea~~l~IP~IalvDTd 151 (222)
+.+|.||+.....+. .+++++...+||+|.+ |+.
T Consensus 60 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~ 95 (303)
T 3d02_A 60 RKVDAITIVPNDANVLEPVFKKARDAGIVVLTN-ESP 95 (303)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEE-SCT
T ss_pred cCCCEEEEecCChHHHHHHHHHHHHCCCeEEEE-ecC
Confidence 579998887653322 3568888889999976 554
No 154
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=29.78 E-value=50 Score=28.44 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=27.1
Q ss_pred ccCCcEEEEeCCCCC---chhhhHhh-hcCCCEEEEecCC
Q psy16262 116 FREPRLLVVTDPHTD---HQPITEAA-YVNIPVIAFCNTE 151 (222)
Q Consensus 116 ~~~P~lvii~dp~~d---~~aI~Ea~-~l~IP~IalvDTd 151 (222)
-+.||++|++.|+.- ...-||.. ..+||+|-|-|.-
T Consensus 62 ~~~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 101 (283)
T 1qv9_A 62 DFEPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAP 101 (283)
T ss_dssp HHCCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGG
T ss_pred hcCCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCc
Confidence 358999999999865 33445543 4699999999974
No 155
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=29.25 E-value=1.7e+02 Score=23.30 Aligned_cols=90 Identities=9% Similarity=0.035 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCcEEEEecChh---h---HHHHHHHHHHcCCcccccccc---CCcc----chH-----HHhhc-cCCc
Q psy16262 60 LAARAIVAIEHPADVFVISSRPI---G---QRAVLKFASYTGATPIAGRFT---PGAF----TNQ-----IQAAF-REPR 120 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~---~---~~~v~~~a~~~g~~yv~~rW~---gG~L----TN~-----i~~~~-~~P~ 120 (222)
.|+..+... ..++|.|++.... . .+-.++..+..|..+. ..|+ .|.+ +.. ++.+. ..|+
T Consensus 112 ~a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 189 (288)
T 2qu7_A 112 IATKRVLES-TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVN-PSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIK 189 (288)
T ss_dssp HHHHHHHTS-SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCC-GGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHc-CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCC-cceEEeccCCccccCCHHHHHHHHHHHHhcCCC
Confidence 455544432 3568888876532 1 1223344455564432 2332 4444 211 11211 2799
Q ss_pred EEEEeCCCCCchhhhHhhhcCC--C----EEEEecCC
Q psy16262 121 LLVVTDPHTDHQPITEAAYVNI--P----VIAFCNTE 151 (222)
Q Consensus 121 lvii~dp~~d~~aI~Ea~~l~I--P----~IalvDTd 151 (222)
.||..+...-.-+++.+...|+ | ++|+=|+.
T Consensus 190 ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 226 (288)
T 2qu7_A 190 GIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDDSY 226 (288)
T ss_dssp EEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESCCT
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCCCceEEEEeCChH
Confidence 9998864333456666666665 4 78876654
No 156
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=29.01 E-value=34 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.271 Sum_probs=20.5
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
.-.||+||..+. ......+-...+||||+.+
T Consensus 94 al~PDLIi~~~~-~~~~~~~~~~~~GiPvv~~ 124 (346)
T 2etv_A 94 TLQPDVVFITYV-DRXTAXDIQEXTGIPVVVL 124 (346)
T ss_dssp HHCCSEEEEESC-CHHHHHHHHHHHTSCEEEE
T ss_pred cCCCCEEEEeCC-ccchHHHHHHhcCCcEEEE
Confidence 347999998764 2222333346789999987
No 157
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=28.44 E-value=1.7e+02 Score=23.56 Aligned_cols=91 Identities=18% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCcEEEEecCh-hh------HHHHHHHHHHcCCccccccc-cCCccch-----HHHhh---ccCCcEE
Q psy16262 59 LLAARAIVAIEHPADVFVISSRP-IG------QRAVLKFASYTGATPIAGRF-TPGAFTN-----QIQAA---FREPRLL 122 (222)
Q Consensus 59 ~~a~~~i~~i~~~~~ILfv~t~~-~~------~~~v~~~a~~~g~~yv~~rW-~gG~LTN-----~i~~~---~~~P~lv 122 (222)
+.|+..+... ..++|.|++... .. .+-.++..+..|..+.. .| ..|.++- .++.+ ...|+.|
T Consensus 122 ~~a~~~L~~~-G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 199 (289)
T 2fep_A 122 YDAVKLLVDK-GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNE-QFVAEGDYTYDSGLEALQHLMSLDKKPTAI 199 (289)
T ss_dssp HHHHHHHHHT-TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCG-GGEEECCSCHHHHHHHHHHHTTSSSCCSEE
T ss_pred HHHHHHHHHC-CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCCh-heEeeCCCCHHHHHHHHHHHHcCCCCCCEE
Confidence 3455555442 456888887654 21 12333445555644322 22 2233322 12222 2468999
Q ss_pred EEeCCCCCchhhhHhhhcCC--C----EEEEecCC
Q psy16262 123 VVTDPHTDHQPITEAAYVNI--P----VIAFCNTE 151 (222)
Q Consensus 123 ii~dp~~d~~aI~Ea~~l~I--P----~IalvDTd 151 (222)
|..+...-.-+++.+...|+ | ++|+=|+.
T Consensus 200 ~~~~d~~A~g~~~al~~~G~~vP~di~vvg~D~~~ 234 (289)
T 2fep_A 200 LSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTR 234 (289)
T ss_dssp EESSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCG
T ss_pred EECCHHHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 98764322345555555554 4 78887764
No 158
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=27.87 E-value=72 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=34.2
Q ss_pred cCCcEEEEeCCCCC--chhhhHhhhcCCCEEEEecCCCCC-CcceEEccCCCCCchhHHHHHHHH
Q psy16262 117 REPRLLVVTDPHTD--HQPITEAAYVNIPVIAFCNTESPL-RFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 117 ~~P~lvii~dp~~d--~~aI~Ea~~l~IP~IalvDTd~~~-~~IdypIP~Ndds~~si~li~~lL 178 (222)
+.+|.||+.....+ ...++++...+||+|.+ |+..+. ...++.-+ |...+.......|
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L 121 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQKGIPVILV-DRKILSDKYTAYIGA---DNYEIGRSVGNYI 121 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEE-SSCCSSSCSSEEEEE---CHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEe-CCCCCCcceeEEEec---CHHHHHHHHHHHH
Confidence 57999988765433 25677888889999976 554332 23444432 3344444444444
No 159
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=27.48 E-value=1.2e+02 Score=24.97 Aligned_cols=59 Identities=5% Similarity=-0.184 Sum_probs=35.3
Q ss_pred ccCCcEEEEeCCCCCch-hhhHhhhcCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQ-PITEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLL 178 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~-aI~Ea~~l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL 178 (222)
.+.+|.||+.....+.. ..+.+...+||+|.+ |.+.+...+++.-. |...+.......|
T Consensus 117 ~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L 176 (338)
T 3dbi_A 117 DLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVL-NRRLRKNSSHSVWC---DHKQTSFNAVAEL 176 (338)
T ss_dssp HTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEE-SSCCSSSGGGEECB---CHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEE-cCCCCCCCCCEEEE---ChHHHHHHHHHHH
Confidence 36899999986554433 555567779998865 55554444555442 3444444444444
No 160
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.96 E-value=1.7e+02 Score=23.46 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=46.5
Q ss_pred HHHHHHHHhhCCCcEEEEecChh---h---HHHHHHHHHHcCCccccccc-cCCccchH-----HHhh--ccCCcEEEEe
Q psy16262 60 LAARAIVAIEHPADVFVISSRPI---G---QRAVLKFASYTGATPIAGRF-TPGAFTNQ-----IQAA--FREPRLLVVT 125 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~---~---~~~v~~~a~~~g~~yv~~rW-~gG~LTN~-----i~~~--~~~P~lvii~ 125 (222)
.++..+... ..++|.|++.... . .+-.++..+..|..+. ..| ..|.++.. ++.+ ...|+.||+.
T Consensus 115 ~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~ 192 (290)
T 3clk_A 115 QATNLLINE-GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAIN-QEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAA 192 (290)
T ss_dssp HHHHHHHTT-TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCC-GGGEECCCSSHHHHHHHHHHHCTTCCCSEEEES
T ss_pred HHHHHHHHc-CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCC-cceEEcCCCChhhHHHHHHHHhccCCCcEEEEC
Confidence 444444432 3568888876421 1 1233444555564432 122 23433321 2222 3579999987
Q ss_pred CCCCCchhhhHhhhcCC--C----EEEEecCC
Q psy16262 126 DPHTDHQPITEAAYVNI--P----VIAFCNTE 151 (222)
Q Consensus 126 dp~~d~~aI~Ea~~l~I--P----~IalvDTd 151 (222)
+...-.-+++.+...|+ | ++|+=|+.
T Consensus 193 ~d~~a~g~~~al~~~g~~vP~di~vvg~d~~~ 224 (290)
T 3clk_A 193 SDMTAIGILNQASSFGIEVPKDLSIVSIDGTE 224 (290)
T ss_dssp SHHHHHHHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred CcHHHHHHHHHHHHcCCCCCCceEEEEeCChH
Confidence 64333345666666654 4 88887765
No 161
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=26.93 E-value=56 Score=21.99 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=29.4
Q ss_pred HHHhhCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCcc
Q psy16262 65 IVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAF 108 (222)
Q Consensus 65 i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~L 108 (222)
+..+..+..+.++.+.+...+-+.++|+..|..++...-.+|.+
T Consensus 27 l~~l~~G~~L~V~~dd~~a~~di~~~~~~~G~~~~~~~~~~~~~ 70 (78)
T 1pav_A 27 YKQAKVGEVISVYSTDAGTKKDAPAWIQKSGQELVGVFDRNGYY 70 (78)
T ss_dssp HTTSCTTCCEECCBSSSCHHHHHHHHHHHHTEEECCCCCCSSCB
T ss_pred HHcCCCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 33444455566778888877889999999997765533345543
No 162
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=26.80 E-value=1.5e+02 Score=20.20 Aligned_cols=78 Identities=10% Similarity=0.187 Sum_probs=41.3
Q ss_pred cEEEEecChhhHHHHHHHHHHcCCccccccc-cCCccchHHHhhccCCcEEEEeCCCCC---chhhhHhhh--cCCCEEE
Q psy16262 73 DVFVISSRPIGQRAVLKFASYTGATPIAGRF-TPGAFTNQIQAAFREPRLLVVTDPHTD---HQPITEAAY--VNIPVIA 146 (222)
Q Consensus 73 ~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW-~gG~LTN~i~~~~~~P~lvii~dp~~d---~~aI~Ea~~--l~IP~Ia 146 (222)
+||++...+.....+.+..+..| +.+.+.. -+......++ ...||+|++--...+ ...+++.+. -++|+|.
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~~a~~~~~--~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVE--TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT-EEEEEEESSSTTHHHHHH--HHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC-cEEEEEcCCHHHHHHHHH--hcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 57888888888887887777766 2222111 1111112222 246998776432222 233444333 3688888
Q ss_pred EecCCCC
Q psy16262 147 FCNTESP 153 (222)
Q Consensus 147 lvDTd~~ 153 (222)
+.+....
T Consensus 80 ~s~~~~~ 86 (134)
T 3f6c_A 80 VSAKNDH 86 (134)
T ss_dssp EECC---
T ss_pred EeCCCCh
Confidence 8876553
No 163
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=26.15 E-value=40 Score=28.74 Aligned_cols=30 Identities=7% Similarity=0.108 Sum_probs=23.1
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
.-.||+||.... ....+.+-+++|||++.+
T Consensus 114 al~PDLIi~~~~--~~~~~~~L~~~gipvv~~ 143 (335)
T 4hn9_A 114 AATPDVVFLPMK--LKKTADTLESLGIKAVVV 143 (335)
T ss_dssp HTCCSEEEEEGG--GHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEeCc--chhHHHHHHHcCCCEEEE
Confidence 458999998753 345677778889999987
No 164
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=25.42 E-value=2e+02 Score=22.29 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=35.4
Q ss_pred EEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeC----CCC------CchhhhHhhhcCCC
Q psy16262 74 VFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTD----PHT------DHQPITEAAYVNIP 143 (222)
Q Consensus 74 ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~d----p~~------d~~aI~Ea~~l~IP 143 (222)
|+++..-......+.+..++.|.....-++-.+.+- .+.. ..+|.||+.. +.. ...+++++ ..++|
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~-~~~~--~~~dglil~gG~~~~~~~~~~~~~~~~i~~~-~~~~P 79 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIK-GIER--IDPDRLIISPGPGTPEKREDIGVSLDVIKYL-GKRTP 79 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHH-HHHH--HCCSEEEECCCSSCTTSHHHHTTHHHHHHHH-TTTSC
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHH-HHhh--CCCCEEEECCCCCChhhhhhhhHHHHHHHHh-cCCCc
Confidence 555654444334455555556654332222111110 1111 1578888852 221 12556665 56999
Q ss_pred EEEEe
Q psy16262 144 VIAFC 148 (222)
Q Consensus 144 ~Ialv 148 (222)
+.|+|
T Consensus 80 vLGIC 84 (195)
T 1qdl_B 80 ILGVC 84 (195)
T ss_dssp EEEET
T ss_pred EEEEe
Confidence 99998
No 165
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=25.33 E-value=30 Score=30.62 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.3
Q ss_pred chhhhHhhhcCCCEEEEecCCC
Q psy16262 131 HQPITEAAYVNIPVIAFCNTES 152 (222)
Q Consensus 131 ~~aI~Ea~~l~IP~IalvDTd~ 152 (222)
..+++.|.+.++|+|.|+||.-
T Consensus 164 ~r~~~~A~~~~lPlI~lvDt~G 185 (339)
T 2f9y_A 164 LRLMQMAERFKMPIITFIDTPG 185 (339)
T ss_dssp HHHHHHHHHTTCCEEEEEEESC
T ss_pred HHHHHHHhhcCCCEEEEEeCCC
Confidence 4688999999999999999943
No 166
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=25.21 E-value=50 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=23.3
Q ss_pred CCcEEEEeCCC------------CCchhhhHhhhcCCCEEEEec
Q psy16262 118 EPRLLVVTDPH------------TDHQPITEAAYVNIPVIAFCN 149 (222)
Q Consensus 118 ~P~lvii~dp~------------~d~~aI~Ea~~l~IP~IalvD 149 (222)
.+|.|++..+. ....+|+++...++|+.|+|=
T Consensus 40 ~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~ 83 (200)
T 1ka9_H 40 EADLLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICV 83 (200)
T ss_dssp SCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTH
T ss_pred cCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcH
Confidence 56777765522 135678888888999999985
No 167
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=25.18 E-value=91 Score=24.82 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=29.4
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEEecCCC-CCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAFCNTES-PLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~IalvDTd~-~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
.+.+|.|| +.+..+...+++ .+||+|.+ |++. +...+++.-. |...+.......|.
T Consensus 58 ~~~vdgiI-~~~~~~~~~~~~---~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~L~ 114 (280)
T 3gyb_A 58 SMRPDGII-IAQDIPDFTVPD---SLPPFVIA-GTRITQASTHDSVAN---DDFRGAEIATKHLI 114 (280)
T ss_dssp TTCCSEEE-EESCC-----------CCCEEEE-SCCCSSSCSTTEEEE---CHHHHHHHHHHHHH
T ss_pred hCCCCEEE-ecCCCChhhHhh---cCCCEEEE-CCCCCCCCCCCEEEe---chHHHHHHHHHHHH
Confidence 36899999 776666666665 79999865 5554 3344566543 34455554444443
No 168
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=24.69 E-value=32 Score=30.27 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.1
Q ss_pred chhhhHhhhcCCCEEEEecCCC
Q psy16262 131 HQPITEAAYVNIPVIAFCNTES 152 (222)
Q Consensus 131 ~~aI~Ea~~l~IP~IalvDTd~ 152 (222)
..+++.|.+.++|+|.|+||.-
T Consensus 150 ~r~~~~A~~~~~PlI~lvdt~G 171 (327)
T 2f9i_A 150 LRLMKQAEKFNRPIFTFIDTKG 171 (327)
T ss_dssp HHHHHHHHHTTCCEEEEEEESC
T ss_pred HHHHHHHhhcCCCEEEEEeCCC
Confidence 4578999999999999999953
No 169
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=24.47 E-value=3e+02 Score=22.65 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=46.6
Q ss_pred HHHHHHHHhhCCCcEEEEecChhh------HHHHHHHHHHcCCccccccc-cCCccchH-----HHhh---ccCCcEEEE
Q psy16262 60 LAARAIVAIEHPADVFVISSRPIG------QRAVLKFASYTGATPIAGRF-TPGAFTNQ-----IQAA---FREPRLLVV 124 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~~~------~~~v~~~a~~~g~~yv~~rW-~gG~LTN~-----i~~~---~~~P~lvii 124 (222)
.|+..+... ..++|.|++..... ..-.++..+..|..+.. .| ..|.++-. ++.+ ...|+.||.
T Consensus 167 ~a~~~L~~~-G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~ 244 (340)
T 1qpz_A 167 MAGRYLIER-GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPE-SWIVQGDFEPESGYRAMQQILSQPHRPTAVFC 244 (340)
T ss_dssp HHHHHHHHH-TCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCG-GGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE
T ss_pred HHHHHHHHC-CCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCCh-hheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE
Confidence 455544443 45689888765321 12233444555544221 22 23433321 2222 246999998
Q ss_pred eCCCCCchhhhHhhhcCC--C----EEEEecCCC
Q psy16262 125 TDPHTDHQPITEAAYVNI--P----VIAFCNTES 152 (222)
Q Consensus 125 ~dp~~d~~aI~Ea~~l~I--P----~IalvDTd~ 152 (222)
.+...-.-+++.+...|+ | +||+=|+..
T Consensus 245 ~nd~~A~g~~~al~~~G~~vP~disvig~D~~~~ 278 (340)
T 1qpz_A 245 GGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRN 278 (340)
T ss_dssp SSHHHHHHHHHHHHHTTCCTTTTCEEEEEECCTT
T ss_pred CCHHHHHHHHHHHHHcCCCCCCCeEEEeECCchH
Confidence 763222345555555554 4 888877753
No 170
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=23.88 E-value=1.1e+02 Score=24.29 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=42.6
Q ss_pred cEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCC-CCC-------chhhhHhhhcCCCE
Q psy16262 73 DVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDP-HTD-------HQPITEAAYVNIPV 144 (222)
Q Consensus 73 ~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp-~~d-------~~aI~Ea~~l~IP~ 144 (222)
+|+++.........+.+..++.|...+.-++-. . . .....+|.||+..- ..+ ....+++...++|+
T Consensus 15 ~i~~id~~~~~~~~~~~~l~~~G~~~~vv~~~~-~----~-~~l~~~DglIl~GG~p~~~~~~~~~~~l~~~~~~~~~Pi 88 (212)
T 2a9v_A 15 KIYVVDNGGQWTHREWRVLRELGVDTKIVPNDI-D----S-SELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPI 88 (212)
T ss_dssp BEEEEEESCCTTCHHHHHHHHTTCBCCEEETTS-C----G-GGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCCSCE
T ss_pred eEEEEeCCCccHHHHHHHHHHCCCEEEEEeCCC-C----H-HHHhCCCEEEECCCCCCCCcccccchhHHHHHHhCCCCE
Confidence 578887776555556666677776544323211 1 1 11234899999864 111 23456666778999
Q ss_pred EEEec
Q psy16262 145 IAFCN 149 (222)
Q Consensus 145 IalvD 149 (222)
.|+|=
T Consensus 89 LGIC~ 93 (212)
T 2a9v_A 89 LGICV 93 (212)
T ss_dssp EEETH
T ss_pred EEECh
Confidence 99883
No 171
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=23.74 E-value=32 Score=27.88 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=21.9
Q ss_pred ccCCcEEEEeCCCCCchhhhHhhhcCCCEEEE
Q psy16262 116 FREPRLLVVTDPHTDHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 116 ~~~P~lvii~dp~~d~~aI~Ea~~l~IP~Ial 147 (222)
.-.||+||..+.. +.......++++|||+.+
T Consensus 58 ~l~PDLIi~~~~~-~~~~~~~L~~~gipvv~~ 88 (260)
T 2q8p_A 58 KLKPTHVLSVSTI-KDEMQPFYKQLNMKGYFY 88 (260)
T ss_dssp HTCCSEEEEEGGG-HHHHHHHHHHHTSCCEEE
T ss_pred hcCCCEEEecCcc-CHHHHHHHHHcCCcEEEe
Confidence 3579999976532 234556677889999976
No 172
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=23.72 E-value=1.2e+02 Score=24.61 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEecChhhHH
Q psy16262 51 LRRTWEKLLLAARAIVAIEHPADVFVISSRPIGQR 85 (222)
Q Consensus 51 L~~T~~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~ 85 (222)
+..+..||..++........+.++.|.+......+
T Consensus 38 ~~sl~~Ql~~~y~~nRr~~~p~~l~~t~~~~~~~~ 72 (197)
T 4fmw_A 38 IKKLHKQIQRCYAENRRALHPVQFYLTSHGGQLKK 72 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCEEEEESCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEeCCChHHHH
Confidence 34556666666655555566788888877654433
No 173
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=23.57 E-value=92 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--CCchhhhHhhhcCCCE
Q psy16262 118 EPRLLVVTDPH--TDHQPITEAAYVNIPV 144 (222)
Q Consensus 118 ~P~lvii~dp~--~d~~aI~Ea~~l~IP~ 144 (222)
..++||..-.. .|..+.++|+..|||+
T Consensus 72 ~~~lVi~at~~~~~n~~i~~~a~~~~i~v 100 (457)
T 1pjq_A 72 SCWLAIAATDDDTVNQRVSDAAESRRIFC 100 (457)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHTTCEE
T ss_pred CccEEEEcCCCHHHHHHHHHHHHHcCCEE
Confidence 35666665322 3688999999999994
No 174
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=23.48 E-value=2.1e+02 Score=21.91 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=46.2
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchH---HHhhc--------------cCCcEEEEeC--CCCC-
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ---IQAAF--------------REPRLLVVTD--PHTD- 130 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~---i~~~~--------------~~P~lvii~d--p~~d- 130 (222)
+.+||+|.-.+.....+.++.+..|..-|. ...|. +.... ..||+|++=- |..+
T Consensus 61 ~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~------~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G 134 (206)
T 3mm4_A 61 GKRVLVVDDNFISRKVATGKLKKMGVSEVE------QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDG 134 (206)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCSEEE------EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCeee------eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCH
Confidence 468999999998888888887777642111 12222 11111 2699877532 2222
Q ss_pred chhhhHhhh------cCCCEEEEecCCCC
Q psy16262 131 HQPITEAAY------VNIPVIAFCNTESP 153 (222)
Q Consensus 131 ~~aI~Ea~~------l~IP~IalvDTd~~ 153 (222)
..++++.+. ..+|+|.+...+.+
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~ 163 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPG 163 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCC
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCc
Confidence 344555443 57999999977633
No 175
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=23.15 E-value=1.6e+02 Score=27.23 Aligned_cols=74 Identities=11% Similarity=0.119 Sum_probs=43.5
Q ss_pred CcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCC------CchhhhHhhhcCCCEE
Q psy16262 72 ADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHT------DHQPITEAAYVNIPVI 145 (222)
Q Consensus 72 ~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~------d~~aI~Ea~~l~IP~I 145 (222)
.+|+++....+....+.+..+..|.+...-.|- -. ...+... .||.||+..-.. ...+.+++...++|+.
T Consensus 8 ~~IlIlD~g~~~~~~i~r~lr~~G~~~~i~p~~-~~-~~~i~~~--~~dgiILsGGp~s~~~~~~~~~~~~~~~~g~PvL 83 (525)
T 1gpm_A 8 HRILILDFGSQYTQLVARRVRELGVYCELWAWD-VT-EAQIRDF--NPSGIILSGGPESTTEENSPRAPQYVFEAGVPVF 83 (525)
T ss_dssp SEEEEEECSCTTHHHHHHHHHHTTCEEEEEESC-CC-HHHHHHH--CCSEEEECCCSSCTTSTTCCCCCGGGGTSSSCEE
T ss_pred CEEEEEECCCccHHHHHHHHHHCCCEEEEEECC-CC-HHHHhcc--CCCEEEECCcCccccccCCcchHHHHHHCCCCEE
Confidence 468888777766666666666777654332221 11 1122222 589988886211 1334567777889999
Q ss_pred EEec
Q psy16262 146 AFCN 149 (222)
Q Consensus 146 alvD 149 (222)
|+|=
T Consensus 84 GIC~ 87 (525)
T 1gpm_A 84 GVCY 87 (525)
T ss_dssp EETH
T ss_pred EECh
Confidence 9873
No 176
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=22.93 E-value=2e+02 Score=20.08 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=43.8
Q ss_pred CCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhh--c-cCCcEEEEeCCCCC---chhhhHhhh--cCC
Q psy16262 71 PADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAA--F-REPRLLVVTDPHTD---HQPITEAAY--VNI 142 (222)
Q Consensus 71 ~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~--~-~~P~lvii~dp~~d---~~aI~Ea~~--l~I 142 (222)
+.+||+|...+.....+.++.+..|.+-+.. ...|. -..... . ..||+|++--...+ ..++++.+. -++
T Consensus 20 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~-~~~~~--~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 20 MINILVASEDASRLAHLARLVGDAGRYRVTR-TVGRA--AQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp GCEEEEECSCHHHHHHHHHHHHHHCSCEEEE-ECCCH--HHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCeEEEE-eCCHH--HHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 4678999998888888887777766332221 11111 011111 2 57898776432233 223333332 378
Q ss_pred CEEEEecCCC
Q psy16262 143 PVIAFCNTES 152 (222)
Q Consensus 143 P~IalvDTd~ 152 (222)
|+|.+.+...
T Consensus 97 ~ii~lt~~~~ 106 (146)
T 4dad_A 97 TCLLVTTDAS 106 (146)
T ss_dssp EEEEEESCCC
T ss_pred cEEEEeCCCC
Confidence 9998887654
No 177
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=21.84 E-value=1.7e+02 Score=26.78 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=42.3
Q ss_pred EEEEecChhhHHHHHHHHHHcCCccccccccCCccchHHHhhccCCcEEEEeCCCC------CchhhhHhhhcCCCEEEE
Q psy16262 74 VFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHT------DHQPITEAAYVNIPVIAF 147 (222)
Q Consensus 74 ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LTN~i~~~~~~P~lvii~dp~~------d~~aI~Ea~~l~IP~Ial 147 (222)
|+++....+....+.+..+..|.+...-.|- -. ...+.. ..||.||+..-.. ...+.+++...++|+.|+
T Consensus 2 i~ilD~g~~~~~~i~r~l~~~G~~~~i~p~~-~~-~~~i~~--~~~dgiIlsGGp~s~~~~~~~~~~~~~~~~~~PvLGI 77 (503)
T 2ywb_A 2 VLVLDFGSQYTRLIARRLRELRAFSLILPGD-AP-LEEVLK--HRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGI 77 (503)
T ss_dssp EEEEESSCTTHHHHHHHHHTTTCCEEEEETT-CC-HHHHHT--TCCSEEEECCCSSCSSCTTCCCCCGGGGCSSCCEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHCCCEEEEEECC-CC-HHHHHh--cCCCEEEECCCCchhccCCCcchHHHHHhCCCCEEEE
Confidence 6677777666666666667777654332231 11 112222 2589998885211 123456677789999998
Q ss_pred ec
Q psy16262 148 CN 149 (222)
Q Consensus 148 vD 149 (222)
|=
T Consensus 78 C~ 79 (503)
T 2ywb_A 78 CY 79 (503)
T ss_dssp TH
T ss_pred CH
Confidence 83
No 178
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=21.74 E-value=3.3e+02 Score=22.25 Aligned_cols=87 Identities=15% Similarity=0.036 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCcEEEEecCh-hhH---HHHHHHHHHcCCccccccccC-C--ccchHHHhh-ccCCcEEEEe-CCCCCc
Q psy16262 61 AARAIVAIEHPADVFVISSRP-IGQ---RAVLKFASYTGATPIAGRFTP-G--AFTNQIQAA-FREPRLLVVT-DPHTDH 131 (222)
Q Consensus 61 a~~~i~~i~~~~~ILfv~t~~-~~~---~~v~~~a~~~g~~yv~~rW~g-G--~LTN~i~~~-~~~P~lvii~-dp~~d~ 131 (222)
++.++... ..++|.++.... .+. +..++.+++.|...+...+.+ | .++..++++ ...||.|++. +...-.
T Consensus 130 ~~~~l~~~-g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~ 208 (368)
T 4eyg_A 130 IGDWAAKN-GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGG 208 (368)
T ss_dssp HHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHH
T ss_pred HHHHHHHc-CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHH
Confidence 34444432 446777666543 333 344555666676655444443 2 334444333 2479999994 444446
Q ss_pred hhhhHhhhcC-----CCEEEEe
Q psy16262 132 QPITEAAYVN-----IPVIAFC 148 (222)
Q Consensus 132 ~aI~Ea~~l~-----IP~Ialv 148 (222)
.+++++...| +|+++.-
T Consensus 209 ~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 209 NFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHHHHHcCCCcCCceEEecC
Confidence 6788888876 5577653
No 179
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=21.61 E-value=40 Score=29.04 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.6
Q ss_pred chhhhHhhhcCCCEEEEecCCC
Q psy16262 131 HQPITEAAYVNIPVIAFCNTES 152 (222)
Q Consensus 131 ~~aI~Ea~~l~IP~IalvDTd~ 152 (222)
..+++-|.+.++|+|.|+||.=
T Consensus 146 ~r~ie~A~~~~lPlI~l~dsgG 167 (285)
T 2f9i_B 146 CRIIDYCTENRLPFILFSASGG 167 (285)
T ss_dssp HHHHHHHHHTTCCEEEEEEECS
T ss_pred HHHHHHHHHcCCCEEEEEeCCC
Confidence 5789999999999999999854
No 180
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=21.02 E-value=3e+02 Score=22.58 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEecChhhHHHHHHHHHHcCCccccccccCCccc-hHHHhhccCCcEEEEeCCC------
Q psy16262 56 EKLLLAARAIVAIEHPADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFT-NQIQAAFREPRLLVVTDPH------ 128 (222)
Q Consensus 56 ~~L~~a~~~i~~i~~~~~ILfv~t~~~~~~~v~~~a~~~g~~yv~~rW~gG~LT-N~i~~~~~~P~lvii~dp~------ 128 (222)
..+..|+..+..-...-+++++|..+... .+++.+...... | .+. |.+. ..+......-|++++....
T Consensus 214 ~~li~a~~~l~~~~~~~~l~i~G~g~~~~-~l~~~~~~~~~~-v--~~~-g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~ 288 (394)
T 3okp_A 214 DSLIKAMPQVIAARPDAQLLIVGSGRYES-TLRRLATDVSQN-V--KFL-GRLEYQDMINTLAAADIFAMPARTRGGGLD 288 (394)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEECCCTTHH-HHHHHTGGGGGG-E--EEE-ESCCHHHHHHHHHHCSEEEECCCCBGGGTB
T ss_pred HHHHHHHHHHHhhCCCeEEEEEcCchHHH-HHHHHHhcccCe-E--EEc-CCCCHHHHHHHHHhCCEEEecCcccccccc
Confidence 33444444443322234566676655433 334443211111 1 122 3333 2233445667877765543
Q ss_pred --CCchhhhHhhhcCCCEEE
Q psy16262 129 --TDHQPITEAAYVNIPVIA 146 (222)
Q Consensus 129 --~d~~aI~Ea~~l~IP~Ia 146 (222)
.-...+-||...|+|+|+
T Consensus 289 ~e~~~~~~~Ea~a~G~PvI~ 308 (394)
T 3okp_A 289 VEGLGIVYLEAQACGVPVIA 308 (394)
T ss_dssp CCSSCHHHHHHHHTTCCEEE
T ss_pred ccccCcHHHHHHHcCCCEEE
Confidence 225789999999999999
No 181
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=20.99 E-value=1.9e+02 Score=23.80 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCCcEEEEecCh-hh------HHHHHHHHHHcCCccccccc-cCCccchH-----HHhh---ccCCcEEE
Q psy16262 60 LAARAIVAIEHPADVFVISSRP-IG------QRAVLKFASYTGATPIAGRF-TPGAFTNQ-----IQAA---FREPRLLV 123 (222)
Q Consensus 60 ~a~~~i~~i~~~~~ILfv~t~~-~~------~~~v~~~a~~~g~~yv~~rW-~gG~LTN~-----i~~~---~~~P~lvi 123 (222)
.|+..+... ..++|.|++... .. .+-.++..+..|..+.. .| ..|.++-. ++.+ ...|+.||
T Consensus 167 ~a~~~L~~~-G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~ 244 (332)
T 2hsg_A 167 DAVQSLIDS-GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRD-SYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF 244 (332)
T ss_dssp HHHHHHHTT-TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCG-GGEEECCSSHHHHHHHHHHHHHSSSCCSEEE
T ss_pred HHHHHHHHC-CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCCh-heEEeCCCCHHHHHHHHHHHHcCCCCCeEEE
Confidence 444444432 346788887654 21 12233444445543222 22 23333321 1222 24699999
Q ss_pred EeCCCCCchhhhHhhhcCC--C----EEEEecCC
Q psy16262 124 VTDPHTDHQPITEAAYVNI--P----VIAFCNTE 151 (222)
Q Consensus 124 i~dp~~d~~aI~Ea~~l~I--P----~IalvDTd 151 (222)
..+...-.-+++.+...|+ | ++|+=|+.
T Consensus 245 ~~nd~~A~g~~~al~~~G~~vP~disvvg~D~~~ 278 (332)
T 2hsg_A 245 VGTDEMALGVIHGAQDRGLNVPNDLEIIGFDNTR 278 (332)
T ss_dssp ESSHHHHHHHHHHHHHTTCCHHHHCEEEEESCCG
T ss_pred ECChHHHHHHHHHHHHcCCCCCCCeEEEEECChH
Confidence 8753322346666666665 3 78876654
No 182
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=20.92 E-value=3.2e+02 Score=24.94 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=26.0
Q ss_pred cCCcEEEEeC-CCCCchhhhHhhhcCCCEEEEec
Q psy16262 117 REPRLLVVTD-PHTDHQPITEAAYVNIPVIAFCN 149 (222)
Q Consensus 117 ~~P~lvii~d-p~~d~~aI~Ea~~l~IP~IalvD 149 (222)
..+|+||+.. -..+.-.+++|+..|||+++=.+
T Consensus 79 ~~~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e 112 (524)
T 3hn7_A 79 PAPDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQ 112 (524)
T ss_dssp SCCSEEEECTTCCTTSHHHHHHHHHTCCEEEHHH
T ss_pred CCCCEEEECCCcCCCCHHHHHHHHCCCcEEEHHH
Confidence 3588888775 35667888999999999998665
No 183
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=20.89 E-value=39 Score=26.92 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=20.8
Q ss_pred cCCcEEEEeCCCCCchhhhHhh---hcCCCEEEEecC
Q psy16262 117 REPRLLVVTDPHTDHQPITEAA---YVNIPVIAFCNT 150 (222)
Q Consensus 117 ~~P~lvii~dp~~d~~aI~Ea~---~l~IP~IalvDT 150 (222)
..||+|+|=.-.-.-.+..|+. -+.||++|+.--
T Consensus 78 ~~PDLilIDGGkgQl~aA~~vl~elg~~i~v~glAK~ 114 (159)
T 2nrr_A 78 PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKK 114 (159)
T ss_dssp CCCSEEEESSCHHHHHHHHHHHHHTTCCCCEEEEC--
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCccEEEEEcC
Confidence 4799998766443333433333 246999999973
No 184
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.62 E-value=2.8e+02 Score=22.82 Aligned_cols=124 Identities=15% Similarity=0.075 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHH--------hh--CCCcEEEEe---cChhhHHH---HHHHHHHcCCccccccccCCccchH---H
Q psy16262 52 RRTWEKLLLAARAIVA--------IE--HPADVFVIS---SRPIGQRA---VLKFASYTGATPIAGRFTPGAFTNQ---I 112 (222)
Q Consensus 52 ~~T~~~L~~a~~~i~~--------i~--~~~~ILfv~---t~~~~~~~---v~~~a~~~g~~yv~~rW~gG~LTN~---i 112 (222)
++|.++.+.++.-+-. ++ ....|-++- +.++...+ +++.|+..|...+. ....+..... +
T Consensus 29 ~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~-~~~~~~~~~~~~~~ 107 (340)
T 1qpz_A 29 EETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLIL-GNAWNNLEKQRAYL 107 (340)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEE-EECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEE-EeCCCCHHHHHHHH
Confidence 4566777766654431 21 234454443 23444433 44556666654322 1112222111 2
Q ss_pred Hhh-ccCCcEEEEeCCCCCchhhhHhhh-cCCCEEEEecCCCCCCcceEEccCCCCCchhHHHHHHHHH
Q psy16262 113 QAA-FREPRLLVVTDPHTDHQPITEAAY-VNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLA 179 (222)
Q Consensus 113 ~~~-~~~P~lvii~dp~~d~~aI~Ea~~-l~IP~IalvDTd~~~~~IdypIP~Ndds~~si~li~~lL~ 179 (222)
+.+ .+.+|.||+.....+...+..... .+||+|.+-....+....++.- .|...+.......|.
T Consensus 108 ~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~---~D~~~~~~~a~~~L~ 173 (340)
T 1qpz_A 108 SMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVI---DNAFEGGYMAGRYLI 173 (340)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESSCCCSSSEEEE---CCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEecccCCCCCCCEEE---ECHHHHHHHHHHHHH
Confidence 222 367999998765544333444433 6999997643222222234433 233444444444443
No 185
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=20.18 E-value=4.1e+02 Score=22.76 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=67.9
Q ss_pred hhCCCcEEEEecChhhH---HHHHHHHHHcCCc---cccccccCCccchHHHhhccCCc-EEEEeCCCCC---chhhhHh
Q psy16262 68 IEHPADVFVISSRPIGQ---RAVLKFASYTGAT---PIAGRFTPGAFTNQIQAAFREPR-LLVVTDPHTD---HQPITEA 137 (222)
Q Consensus 68 i~~~~~ILfv~t~~~~~---~~v~~~a~~~g~~---yv~~rW~gG~LTN~i~~~~~~P~-lvii~dp~~d---~~aI~Ea 137 (222)
+.+...++|+|...... +.-.|+.+.+... |-.+.|..|-+. .-.++ .||++.+..+ ..+++|.
T Consensus 205 ~~~~~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~a------lid~~~pvi~~~~~~~~~~~~~~~~~ 278 (352)
T 3g68_A 205 LVNSKEIRIIGHSDIYGDTLEAALKLLETMRIPVTGYEFEEFIHGIYN------AINSDSTIFILDTGKEPRVTKMIDVL 278 (352)
T ss_dssp HHTCCEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHTTGGG------GCCTTEEEEEEECSCCTTHHHHHHHH
T ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHHHHhcccccccchhhccccchh------eeCCCceEEEEECCchHHHHHHHHHH
Confidence 34667889999887542 3333444443332 344556666432 12333 3444444322 4577888
Q ss_pred hhcCCCEEEEecCCCCCCcceEEccCCCCC-chh--HHHHHHHHHHHHHhhhCCCCCCCCc
Q psy16262 138 AYVNIPVIAFCNTESPLRFVDIAIPCNNKS-PHS--IGLMWWLLAREVLRFRGVIGPDYLT 195 (222)
Q Consensus 138 ~~l~IP~IalvDTd~~~~~IdypIP~Ndds-~~s--i~li~~lL~~ai~~~~g~~~~~~~~ 195 (222)
+..|-+++.+.+.+.. ...++.+|.-.+. ... .-..+.+|+-.+...||.- ++.|+
T Consensus 279 ~~~g~~v~~i~~~~~~-~~~~~~~p~~~~~~~~pl~~~v~~Qlla~~~A~~~G~d-~D~Pr 337 (352)
T 3g68_A 279 SGWTENVFAIGRDVTE-NDKNLKIDITDNPYYQTFNFIVPIQLICGEIPTLRGVD-PSVPK 337 (352)
T ss_dssp HTTCSCEEEEESSCCC-STTCEECCCCSCTTGGGGTTTHHHHHHHHHSGGGGTCC-TTSCS
T ss_pred HHcCCeEEEEecCCCC-CceeEEeCCCCchhHhHHHHHHHHHHHHHHHHHHhCcC-CCCCC
Confidence 8899999999876532 4467888864332 222 2344567777776666543 34443
Done!