RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16262
         (222 letters)



>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 193

 Score =  182 bits (464), Expect = 3e-59
 Identities = 59/173 (34%), Positives = 106/173 (61%), Gaps = 1/173 (0%)

Query: 15  VTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEHPADV 74
               L A  HIG++     M+++++K R DG+++L++R+  E++ +AA+  ++   P+ +
Sbjct: 8   PDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAK-FLSRYEPSKI 66

Query: 75  FVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAFREPRLLVVTDPHTDHQPI 134
            ++++R    + V  F+   G+  I GRF PG  TN + + +REP ++ V DP  D Q +
Sbjct: 67  LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQAV 126

Query: 135 TEAAYVNIPVIAFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRG 187
           +EA  V IPV+A C++ +    VD+ IP NNK   ++ +++WLLARE+ + RG
Sbjct: 127 SEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRG 179


>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
           thermophilus [TaxId: 274]}
          Length = 234

 Score =  136 bits (343), Expect = 1e-40
 Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 50/224 (22%)

Query: 15  VTKMLGAQTHIG--SENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAI-VAIEHP 71
           V ++L A  H G   +  + +  +Y+Y  RN G+HI++L++T E+L    R I       
Sbjct: 1   VKELLEAGVHFGHERKRWNPKFARYIYAERN-GIHIIDLQKTMEELERTFRFIEDLAMRG 59

Query: 72  ADVFVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQIQAAF--------------- 116
             +  + ++   Q  V   A   G   +  R+  G  TN    +                
Sbjct: 60  GTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASP 119

Query: 117 -------------------------------REPRLLVVTDPHTDHQPITEAAYVNIPVI 145
                                          R P  + V DP  +   + EA  + IPVI
Sbjct: 120 EIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVI 179

Query: 146 AFCNTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLRFRGVI 189
           A  +T+S    VD  IP N+ +  SI L+       +++ RG +
Sbjct: 180 ALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGV 223


>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli
           [TaxId: 562]}
          Length = 218

 Score =  123 bits (309), Expect = 1e-35
 Identities = 46/216 (21%), Positives = 71/216 (32%), Gaps = 50/216 (23%)

Query: 18  MLGAQTHIG--SENSDYQMEQYVYKRRNDGVHILNLRRTWEKLLLAARAIVAIEH-PADV 74
           ML A  H G  +   + +M+ +++  RN  VHI+NL +T      A   +  I      +
Sbjct: 1   MLKAGVHFGHQTRYWNPKMKPFIFGARN-KVHIINLEKTVPMFNEALAELNKIASRKGKI 59

Query: 75  FVISSRPIGQRAVLKFASYTGATPIAGRFTPGAFTNQ----------------------- 111
             + ++     AV   A       +  R+  G  TN                        
Sbjct: 60  LFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFD 119

Query: 112 -----------------------IQAAFREPRLLVVTDPHTDHQPITEAAYVNIPVIAFC 148
                                  I+     P  L V D   +H  I EA  + IPV A  
Sbjct: 120 KLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIV 179

Query: 149 NTESPLRFVDIAIPCNNKSPHSIGLMWWLLAREVLR 184
           +T S    VD  IP N+ +  ++ L    +A  V  
Sbjct: 180 DTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVRE 215


>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
           actinomycetemcomitans [TaxId: 714]}
          Length = 344

 Score = 27.5 bits (60), Expect = 1.2
 Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 7/50 (14%)

Query: 9   SLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGVHILNL-RRTWEK 57
             +  +  ++ GA   I  E++    ++ + K         +L      K
Sbjct: 298 KNRVQNTHEIAGAALSIWGEDAKALKDETIQKN------TKSLLEAVIHK 341


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 859,893
Number of extensions: 39543
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 7
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)