BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16263
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZKQ|BB Chain b, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 295
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>pdb|3BCH|A Chain A, Crystal Structure Of The Human Laminin Receptor
Precursor
Length = 253
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 2 SGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
SG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 35 SGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 82
>pdb|3IZ6|A Chain A, Localization Of The Small Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 305
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
LS +E D+ ML A H+G++N D+QME+YVYKRR DG I+++
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDG-IYII 53
>pdb|3ZEY|C Chain C, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 277
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
+S G +L +KE DV K+L H+G++NS M++Y++ R +DG
Sbjct: 37 VSSGAKVLRMKESDVQKLLAMHCHLGTKNSSSAMKKYIHGRTSDG 81
>pdb|3JYV|B Chain B, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 193
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 10 LKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
L +D +L A TH+G+ N E YV+ R DG
Sbjct: 1 LTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDG 36
>pdb|3IZB|A Chain A, Localization Of The Small Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The First 80s In The Asymmetric Unit.
pdb|3O30|A Chain A, Yeast 80s Ribosome. This Entry Consists Of The 40s
Subunit Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|A Chain A, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 252
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
L +D +L A TH+G+ N E YV+ R DG
Sbjct: 7 FDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDG 44
>pdb|1S1H|B Chain B, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex
From Yeast Obtained By Docking Atomic Models For Rna
And Protein Components Into A 11.7 A Cryo-Em Map. This
File, 1s1h, Contains 40s Subunit. The 60s Ribosomal
Subunit Is In File 1s1i
Length = 185
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 18 MLGAQTHIGSENSDYQMEQYVYKRRNDG 45
+L A TH+G+ N E YV+ R DG
Sbjct: 4 LLAANTHLGARNVQVHQEPYVFNARPDG 31
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 22 QTHIGSENSDYQMEQYVYKRR---NDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQV 78
Q +I + S EQ+V+K + N ++F +I SL LC +W+H + D KQ
Sbjct: 402 QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHR-KGTDYHKQP 460
Query: 79 W 79
W
Sbjct: 461 W 461
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 22 QTHIGSENSDYQMEQYVYKRR---NDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQV 78
Q +I + S EQ+V+K + N ++F +I SL LC +W+H + D KQ
Sbjct: 411 QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHR-KGTDYHKQP 469
Query: 79 W 79
W
Sbjct: 470 W 470
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 22 QTHIGSENSDYQMEQYVYKRR---NDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQV 78
Q +I + S EQ+V+K + N ++F +I SL LC +W+H + D KQ
Sbjct: 421 QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHR-KGTDYHKQP 479
Query: 79 W 79
W
Sbjct: 480 W 480
>pdb|3J20|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (30s Ribosomal Subunit)
Length = 202
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 19 LGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
L A HIG++ M++++Y+ R DG ++VL
Sbjct: 13 LAAGVHIGTQQKTKDMKKFIYRVRQDG-LYVL 43
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 22 QTHIGSENSDYQMEQYVYKRR---NDGEIFVLVICYRVSLILCNNIWQHMAELLDGSKQV 78
Q +I + S EQ+V+K + N ++F +I SL LC +W+H + D KQ
Sbjct: 177 QVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQSLSLCGMVWEHR-KGTDYHKQP 235
Query: 79 W 79
W
Sbjct: 236 W 236
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 464 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 519
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 520 GM--HIAETL 527
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 465 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 520
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 521 GM--HIAETL 528
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 465 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 520
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 521 GM--HIAETL 528
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 492 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 547
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 548 GM--HIAETL 555
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 465 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 520
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 521 GM--HIAETL 528
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 464 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 519
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 520 GM--HIAETL 527
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 6 DILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRV---SLILCN 62
+++S++ + G+ I N+D Y Y R DGE +++V+ ++ S L +
Sbjct: 464 NLISIRHETPALSTGSYRDIDPSNADV----YAYTRSQDGETYLVVVNFKAEPRSFTLPD 519
Query: 63 NIWQHMAELL 72
+ H+AE L
Sbjct: 520 GM--HIAETL 527
>pdb|1VI6|A Chain A, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI6|B Chain B, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI6|C Chain C, Crystal Structure Of Ribosomal Protein S2p
pdb|1VI6|D Chain D, Crystal Structure Of Ribosomal Protein S2p
Length = 208
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 19 LGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI 52
L A HIG++ M+++++K R DG ++VL I
Sbjct: 17 LAAGVHIGTQIKTGDMKKFIFKVRQDG-LYVLDI 49
>pdb|2XZM|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|B Chain B, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 241
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 11 KEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
K+DD+ ++L + H + N + QM++Y+ + +G
Sbjct: 6 KQDDIKRLLASNCHQATINLNNQMKRYISHKGVNG 40
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 22 QTHIGSENSDYQMEQYVYKRRNDG---EIFVLVICYRVSLILCNNIWQHMAELLDGSKQV 78
Q +I + S EQ+V K ++ ++F +I SL LC +W+H D KQ
Sbjct: 169 QVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQSLSLCGMVWEHRKG-TDYHKQP 227
Query: 79 W 79
W
Sbjct: 228 W 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,289,509
Number of Sequences: 62578
Number of extensions: 110552
Number of successful extensions: 217
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 23
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)