Query psy16263
Match_columns 112
No_of_seqs 113 out of 399
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 16:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00254 40S ribosomal protein 99.9 3.7E-25 8.1E-30 177.3 6.3 90 1-94 1-113 (249)
2 TIGR01012 Sa_S2_E_A ribosomal 99.8 1.3E-20 2.7E-25 146.5 5.1 81 11-95 2-104 (196)
3 PRK04020 rps2P 30S ribosomal p 99.8 1.7E-19 3.7E-24 140.9 5.7 77 14-94 11-109 (204)
4 COG0052 RpsB Ribosomal protein 99.7 4E-18 8.7E-23 137.4 5.1 83 13-100 4-115 (252)
5 PRK12311 rpsB 30S ribosomal pr 99.6 5.8E-16 1.3E-20 128.0 4.0 76 15-95 1-102 (326)
6 PRK05299 rpsB 30S ribosomal pr 99.6 1.3E-15 2.9E-20 121.8 4.5 79 13-96 4-108 (258)
7 TIGR01011 rpsB_bact ribosomal 99.6 1.9E-15 4.1E-20 118.5 4.6 77 14-95 3-105 (225)
8 CHL00067 rps2 ribosomal protei 99.6 2.2E-15 4.8E-20 118.4 4.8 82 11-97 6-113 (230)
9 cd01425 RPS2 Ribosomal protein 99.5 1.8E-14 4E-19 109.6 3.9 74 18-96 1-100 (193)
10 PF00318 Ribosomal_S2: Ribosom 99.5 4.4E-14 9.5E-19 108.9 5.4 73 18-95 1-99 (211)
11 KOG0830|consensus 99.4 1.6E-13 3.4E-18 111.0 3.2 59 30-92 1-82 (254)
12 KOG0832|consensus 99.0 6E-10 1.3E-14 90.1 5.0 75 14-93 49-149 (251)
13 cd00148 PROF Profilin binds ac 50.1 36 0.00078 24.2 4.3 54 8-63 37-103 (127)
14 PTZ00316 profilin; Provisional 46.0 33 0.00072 26.2 3.7 57 7-63 36-109 (150)
15 smart00392 PROF Profilin. Bind 39.5 42 0.00091 23.8 3.3 54 9-64 40-106 (129)
16 PF08055 Trp_leader1: Tryptoph 33.6 20 0.00043 18.6 0.6 11 71-81 1-12 (18)
17 COG3460 Uncharacterized enzyme 26.1 14 0.0003 27.5 -1.1 50 24-73 32-81 (117)
18 cd00562 NifX_NifB This CD repr 25.1 76 0.0016 20.4 2.4 38 55-92 61-101 (102)
19 COG3422 Uncharacterized conser 24.1 62 0.0013 21.5 1.8 35 36-70 4-44 (59)
20 smart00853 MutL_C MutL C termi 23.8 51 0.0011 22.6 1.5 20 35-54 10-29 (136)
21 PF10656 DUF2483: Hypothetical 22.3 40 0.00087 23.2 0.7 37 36-83 6-43 (72)
22 cd00851 MTH1175 This uncharact 20.2 1E+02 0.0022 19.9 2.3 39 54-92 62-102 (103)
23 PF02579 Nitro_FeMo-Co: Dinitr 20.1 1.2E+02 0.0025 19.3 2.5 38 55-92 53-92 (94)
No 1
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=99.91 E-value=3.7e-25 Score=177.34 Aligned_cols=90 Identities=29% Similarity=0.436 Sum_probs=81.1
Q ss_pred CCCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh----------eeeeEeec
Q psy16263 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY----------RVSLILCN 62 (112)
Q Consensus 1 ms~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA----------rviv~s~r 62 (112)
||+++++++++|+|+++||+||+|+|++++|++|++|||++|.||+|||||. || +|++++.|
T Consensus 1 ~~~~~~~~~~~~~~i~~lL~agvHlG~~~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i~~~~~Il~Vstr 80 (249)
T PTZ00254 1 VSSGPKVLTPKEDDIKKMLACKCHIGTKNLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAIENPADVVVVSSR 80 (249)
T ss_pred CCCCcccCCCCHHHHHHHHhcCceeccCcCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 7889999999999999999999999999999999999999888999999995 32 89999999
Q ss_pred chhhHHHHhhc---Ccce--eeeeccchhhhhhhccc
Q psy16263 63 NIWQHMAELLD---GSKQ--VWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 63 p~gq~~v~~f~---~~~~--~~~~~~~~~~~~~~~~~ 94 (112)
+++|++|++|| +..- =||+||+ |||+..
T Consensus 81 ~~~~~~V~k~A~~tg~~~i~~Rw~pGt----lTN~~~ 113 (249)
T PTZ00254 81 PYGQRAVLKFAQYTGASAIAGRFTPGT----FTNQIQ 113 (249)
T ss_pred HHHHHHHHHHHHHhCCeEECCcccCCC----CCCccc
Confidence 99999999999 2221 1799999 999865
No 2
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=99.81 E-value=1.3e-20 Score=146.49 Aligned_cols=81 Identities=25% Similarity=0.298 Sum_probs=71.6
Q ss_pred CHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh---------eeeeEeecchhhHHHHhhc
Q psy16263 11 KEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY---------RVSLILCNNIWQHMAELLD 73 (112)
Q Consensus 11 keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA---------rviv~s~rp~gq~~v~~f~ 73 (112)
++.++++||+||+|+|++++|++|++|||++|+||+|||||. || +|+.++.|+++|++|++||
T Consensus 2 ~~~~i~~ll~agvH~Gh~~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A 81 (196)
T TIGR01012 2 KLVPVDKYLAAGVHIGTQNKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFA 81 (196)
T ss_pred ccccHHHHHhCCeecCCCcCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999996 33 8999999999999999999
Q ss_pred ---Ccc--eeeeeccchhhhhhhcccc
Q psy16263 74 ---GSK--QVWWFHGQVLEVLTMFHNS 95 (112)
Q Consensus 74 ---~~~--~~~~~~~~~~~~~~~~~~~ 95 (112)
+.. .-||.+|+ |||+...
T Consensus 82 ~~~g~~~v~~RWlgGt----LTN~~~~ 104 (196)
T TIGR01012 82 KVTGARAIAGRFTPGT----FTNPMQK 104 (196)
T ss_pred HHhCCceECCeeCCCC----CCCcccc
Confidence 222 12899999 9999753
No 3
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=99.78 E-value=1.7e-19 Score=140.90 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=69.0
Q ss_pred HHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------hh---------eeeeEeecchhhHHHHhhc---
Q psy16263 14 DVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------CY---------RVSLILCNNIWQHMAELLD--- 73 (112)
Q Consensus 14 dV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------AA---------rviv~s~rp~gq~~v~~f~--- 73 (112)
.+++||+||+|+|++++|++|++|||++|+||+|||||. |+ +|+.++.|+++++++++||
T Consensus 11 ~i~~ll~ag~H~Gh~~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~ 90 (204)
T PRK04020 11 PLEEYLAAGVHIGTQQKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVV 90 (204)
T ss_pred eHHHHHhCCeEcCCCcCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999996 33 8899999999999999999
Q ss_pred Cccee--eeeccchhhhhhhccc
Q psy16263 74 GSKQV--WWFHGQVLEVLTMFHN 94 (112)
Q Consensus 74 ~~~~~--~~~~~~~~~~~~~~~~ 94 (112)
+...+ ||.+|+ |||+.+
T Consensus 91 g~~~v~~RWlgG~----LTN~~~ 109 (204)
T PRK04020 91 GAKAITGRFIPGT----LTNPSL 109 (204)
T ss_pred CCeeecCccCCCc----CcCcch
Confidence 33332 899999 999985
No 4
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=4e-18 Score=137.44 Aligned_cols=83 Identities=19% Similarity=0.329 Sum_probs=70.9
Q ss_pred HHHHHHHhhcceec--cccCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHh
Q psy16263 13 DDVTKMLGAQTHIG--SENSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAEL 71 (112)
Q Consensus 13 edV~kmLaAGvHLG--t~n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~ 71 (112)
..+++||+||+|+| ++.||+.|++|||+.| ||+|||||. | .+|+.|+.|.++|++|.+
T Consensus 4 vsm~~lLeAGvHfGhqtr~wnpkm~~fIf~~R-ngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~ 82 (252)
T COG0052 4 VSMKQLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKE 82 (252)
T ss_pred CCHHHHHHcCccccccccccCCcccccceeec-CCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHH
Confidence 46889999999999 5889999999999999 999999995 2 289999999999999999
Q ss_pred hc---Ccc--eeeeeccchhhhhhhccc---chhhhh
Q psy16263 72 LD---GSK--QVWWFHGQVLEVLTMFHN---SWSALV 100 (112)
Q Consensus 72 f~---~~~--~~~~~~~~~~~~~~~~~~---~~~~~~ 100 (112)
|| |.. .-||.+|+ ||||.. |...|-
T Consensus 83 ~A~r~g~~yV~~RwLgG~----LTN~~ti~~si~rl~ 115 (252)
T COG0052 83 FAERTGAYYVNGRWLGGM----LTNFKTIRKSIKRLK 115 (252)
T ss_pred HHHHhCCceecCcccCcc----ccCchhHHHHHHHHH
Confidence 99 443 34899999 999764 555553
No 5
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=99.59 E-value=5.8e-16 Score=128.00 Aligned_cols=76 Identities=21% Similarity=0.320 Sum_probs=65.3
Q ss_pred HHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhhc
Q psy16263 15 VTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELLD 73 (112)
Q Consensus 15 V~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f~ 73 (112)
+++||+||+|+|+ ..||+.|++|||+.| +|+|||||. |+ +|+.|+.|++++++|++||
T Consensus 1 ~~~Ll~agvH~Gh~~~~wnpkM~~yIyg~R-~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A 79 (326)
T PRK12311 1 MRQLLEAGVHFGHQSHRWNPKMAPYIFGTR-NNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAA 79 (326)
T ss_pred ChhHHhCCeecccCCCCCCCcccCceeccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHH
Confidence 4689999999995 578999999999999 599999995 21 9999999999999999999
Q ss_pred -Cccee----eeeccchhhhhhhcccc
Q psy16263 74 -GSKQV----WWFHGQVLEVLTMFHNS 95 (112)
Q Consensus 74 -~~~~~----~~~~~~~~~~~~~~~~~ 95 (112)
.+.+. ||.+|+ |||+.+.
T Consensus 80 ~~~g~~yV~~RWlgG~----LTN~~ti 102 (326)
T PRK12311 80 KRSAQYFVNSRWLGGT----LTNWKTI 102 (326)
T ss_pred HHhCCeeeCCeecCcc----cCCHHHH
Confidence 22232 899999 9998764
No 6
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=99.58 E-value=1.3e-15 Score=121.78 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=67.6
Q ss_pred HHHHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHh
Q psy16263 13 DDVTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAEL 71 (112)
Q Consensus 13 edV~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~ 71 (112)
-.+++||+||+|+|+ ..||+.|++|||+.| +|+|||||. |+ +|+.|+.+++++++|.+
T Consensus 4 ~~i~~Ll~agvH~Gh~~~~wnp~m~~yIyg~r-~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~ 82 (258)
T PRK05299 4 VSMKQLLEAGVHFGHQTRRWNPKMKPYIFGER-NGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAE 82 (258)
T ss_pred CCHHHHHhcCcccccccCcCCCccccceeccc-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHH
Confidence 468999999999996 569999999999999 999999996 22 89999999999999999
Q ss_pred hc-Ccce--e--eeeccchhhhhhhcccch
Q psy16263 72 LD-GSKQ--V--WWFHGQVLEVLTMFHNSW 96 (112)
Q Consensus 72 f~-~~~~--~--~~~~~~~~~~~~~~~~~~ 96 (112)
|| .+.+ + ||.+|+ |||+....
T Consensus 83 ~A~~~~~~yv~~rWlgG~----LTN~~ti~ 108 (258)
T PRK05299 83 EAERCGMPYVNHRWLGGM----LTNFKTIR 108 (258)
T ss_pred HHHHhCCeeeCCeecCee----ccCHHHHH
Confidence 99 2222 2 899999 99987643
No 7
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=99.57 E-value=1.9e-15 Score=118.46 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=66.2
Q ss_pred HHHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhh
Q psy16263 14 DVTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELL 72 (112)
Q Consensus 14 dV~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f 72 (112)
.+++||+||+|+|. +.|++.|++|||+.| ||+|||||. |+ +|+.++.+++.++++++|
T Consensus 3 ~~~~ll~ag~H~Gh~~~~wnp~m~~yIyg~r-~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~ 81 (225)
T TIGR01011 3 SMKDLLEAGVHFGHQTRRWNPKMKPFIFGER-NGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEE 81 (225)
T ss_pred CHHHHHHcCcccccccCcCCcccccceeeee-CCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 36899999999994 678999999999999 999999996 22 899999999999999999
Q ss_pred c-Cccee----eeeccchhhhhhhcccc
Q psy16263 73 D-GSKQV----WWFHGQVLEVLTMFHNS 95 (112)
Q Consensus 73 ~-~~~~~----~~~~~~~~~~~~~~~~~ 95 (112)
| .+.+. ||.+|+ |||+...
T Consensus 82 a~~~~~~yv~~rWlgG~----LTN~~~i 105 (225)
T TIGR01011 82 AERCGMFYVNQRWLGGM----LTNFKTI 105 (225)
T ss_pred HHHhCCcccCCeecCee----ccCHHHH
Confidence 9 23232 899999 9997763
No 8
>CHL00067 rps2 ribosomal protein S2
Probab=99.57 E-value=2.2e-15 Score=118.40 Aligned_cols=82 Identities=18% Similarity=0.337 Sum_probs=69.7
Q ss_pred CHHHHHHHHhhcceeccc--cCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHH
Q psy16263 11 KEDDVTKMLGAQTHIGSE--NSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMA 69 (112)
Q Consensus 11 keedV~kmLaAGvHLGt~--n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v 69 (112)
....+++||+||+|+|++ .|++.|++|||++| ||+|||||. |+ +|+.++.++..++++
T Consensus 6 ~~~~i~~Ll~a~~h~Gh~~~~~np~m~~yIyg~r-~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v 84 (230)
T CHL00067 6 WNINLEEMLEAGVHFGHQTRKWNPKMAPYIYAER-NGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLV 84 (230)
T ss_pred cccCHHHHHhcCeEeccCcCcCCCchhhhhhccc-CCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH
Confidence 345689999999999975 99999999999998 899999996 22 899999999999999
Q ss_pred Hhhc---Cccee--eeeccchhhhhhhcccchh
Q psy16263 70 ELLD---GSKQV--WWFHGQVLEVLTMFHNSWS 97 (112)
Q Consensus 70 ~~f~---~~~~~--~~~~~~~~~~~~~~~~~~~ 97 (112)
+++| +.--+ ||.+|+ |||+.+...
T Consensus 85 ~~~a~~~~~~yv~~rWigG~----LTN~~~i~~ 113 (230)
T CHL00067 85 ASAAIRARCHYVNKRWLGGM----LTNWSTTKT 113 (230)
T ss_pred HHHHHHhCCcCccCcccCCc----ccCHHHHHH
Confidence 9998 33222 899999 999887543
No 9
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=99.49 E-value=1.8e-14 Score=109.56 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=63.6
Q ss_pred HHhhcceeccccC--CcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhhcC-c
Q psy16263 18 MLGAQTHIGSENS--DYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELLDG-S 75 (112)
Q Consensus 18 mLaAGvHLGt~n~--n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f~~-~ 75 (112)
||+||+|+|.+.. ++.|++|||++| ||+|||||. | .+++.++.|+..+++++++|. +
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r-~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~ 79 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGER-NGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERT 79 (193)
T ss_pred CCccceEeCCCcCCCCccchhheeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 5899999997666 999999999999 999999996 2 289999999999999999993 3
Q ss_pred ce----eeeeccchhhhhhhcccch
Q psy16263 76 KQ----VWWFHGQVLEVLTMFHNSW 96 (112)
Q Consensus 76 ~~----~~~~~~~~~~~~~~~~~~~ 96 (112)
.+ -||.+|+ |||+....
T Consensus 80 ~~~~i~~rw~~G~----LTN~~~~~ 100 (193)
T cd01425 80 GSFYVNGRWLGGT----LTNWKTIR 100 (193)
T ss_pred CCeeecCeecCCc----CCCHHHHH
Confidence 34 3899999 99987653
No 10
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=99.48 E-value=4.4e-14 Score=108.94 Aligned_cols=73 Identities=21% Similarity=0.396 Sum_probs=63.0
Q ss_pred HHhhcceeccc--cCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhhc---
Q psy16263 18 MLGAQTHIGSE--NSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELLD--- 73 (112)
Q Consensus 18 mLaAGvHLGt~--n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f~--- 73 (112)
||++|+|+|++ .|++.|++|||+.| +|+|||||. | .+++.++.++.+++++++|+
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r-~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~ 79 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKR-NGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRT 79 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEE-TTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHH
T ss_pred CcccceecCCCcCCCCCCcccceeccc-CceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHh
Confidence 68999999986 79999999999999 999999996 2 28999999999999999999
Q ss_pred Cccee--eeeccchhhhhhhcccc
Q psy16263 74 GSKQV--WWFHGQVLEVLTMFHNS 95 (112)
Q Consensus 74 ~~~~~--~~~~~~~~~~~~~~~~~ 95 (112)
+..-+ +|.+|+ |||+...
T Consensus 80 ~~~yi~~rWi~G~----LTN~~~i 99 (211)
T PF00318_consen 80 GSFYINERWIGGT----LTNWKTI 99 (211)
T ss_dssp TCEEEESS-STTT----TTTTTHC
T ss_pred CCCccCceecCcc----cCcHHHH
Confidence 44434 899999 9998743
No 11
>KOG0830|consensus
Probab=99.39 E-value=1.6e-13 Score=110.95 Aligned_cols=59 Identities=31% Similarity=0.378 Sum_probs=50.0
Q ss_pred CCcccccccccccCCceeEeehh--------h----------heeeeEeecchhhHHHHhhcCcc-----eeeeeccchh
Q psy16263 30 SDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNNIWQHMAELLDGSK-----QVWWFHGQVL 86 (112)
Q Consensus 30 ~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp~gq~~v~~f~~~~-----~~~~~~~~~~ 86 (112)
+++||++|||+||+||+|||||. | |+|.|+|.|+||||||.||+--- --+.+||+
T Consensus 1 ~~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~aienp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~-- 78 (254)
T KOG0830|consen 1 LNFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGT-- 78 (254)
T ss_pred CCcccccccccccCCceEEeeccccHHHHHHHHHHHhhccCccceEEEccCCcchhHHHHHHHhhCCCcccccccccc--
Confidence 57999999999999999999995 2 49999999999999999999221 22799999
Q ss_pred hhhhhc
Q psy16263 87 EVLTMF 92 (112)
Q Consensus 87 ~~~~~~ 92 (112)
+|||
T Consensus 79 --ftn~ 82 (254)
T KOG0830|consen 79 --FTNQ 82 (254)
T ss_pred --cchH
Confidence 7765
No 12
>KOG0832|consensus
Probab=98.98 E-value=6e-10 Score=90.15 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=56.8
Q ss_pred HHHHHHhhcceec--cccCCcccccccccccCCceeEeehh--------hh-----------eeeeEeecchhhHHHHhh
Q psy16263 14 DVTKMLGAQTHIG--SENSDYQMEQYVYKRRNDGEIFVLVI--------CY-----------RVSLILCNNIWQHMAELL 72 (112)
Q Consensus 14 dV~kmLaAGvHLG--t~n~n~qMe~YIykrr~DGi~IInL~--------AA-----------rviv~s~rp~gq~~v~~f 72 (112)
+|++|+.||+|+| +..|++.|+||||+.| .|+|||||. |+ -++-+..|+---.-|+.-
T Consensus 49 ~v~~L~~agvHlGh~t~~wn~~m~pyiyG~R-~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~a 127 (251)
T KOG0832|consen 49 SVEELFNAGVHLGHKTGKWNPRMKPYIYGKR-LGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERA 127 (251)
T ss_pred cHHHHHhccccccccccccCcccchhhcccc-cCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHH
Confidence 7999999999999 4567999999999999 799999995 22 455555565544555544
Q ss_pred c-----Ccceeeeeccchhhhhhhcc
Q psy16263 73 D-----GSKQVWWFHGQVLEVLTMFH 93 (112)
Q Consensus 73 ~-----~~~~~~~~~~~~~~~~~~~~ 93 (112)
| -+-.-+|-+|. |||-.
T Consensus 128 A~r~~gy~~~~~w~~G~----lTN~~ 149 (251)
T KOG0832|consen 128 ARRAGGYSHNRKWLGGL----LTNAR 149 (251)
T ss_pred HHHhcCceeeeeeccce----eecch
Confidence 4 33445899999 88853
No 13
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=50.06 E-value=36 Score=24.24 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=31.4
Q ss_pred cCCCHHHHHHHH----------hhcceeccccCCccc--ccccccccC-CceeEeehhhheeeeEeecc
Q psy16263 8 LSLKEDDVTKML----------GAQTHIGSENSDYQM--EQYVYKRRN-DGEIFVLVICYRVSLILCNN 63 (112)
Q Consensus 8 L~~keedV~kmL----------aAGvHLGt~n~n~qM--e~YIykrr~-DGi~IInL~AArviv~s~rp 63 (112)
.+++.++++.++ ..|+|+|++..-+-. +..||.|+. .|++++-- ...+++.-.+
T Consensus 37 f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d~~~i~~kk~~~Gi~i~kT--~~~ivi~~y~ 103 (127)
T cd00148 37 FNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRADDRSIYGKKGAGGVVIVKT--KQALVIGMYE 103 (127)
T ss_pred CccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecCccEEEeeeCCCeEEEEEC--CCEEEEEEcC
Confidence 455666666664 478999975442211 357776554 78777664 4444444444
No 14
>PTZ00316 profilin; Provisional
Probab=45.99 E-value=33 Score=26.24 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=36.4
Q ss_pred ccCCCHHHHHHHHh----------hcceeccccCCcc------cccccccccC-CceeEeehhhheeeeEeecc
Q psy16263 7 ILSLKEDDVTKMLG----------AQTHIGSENSDYQ------MEQYVYKRRN-DGEIFVLVICYRVSLILCNN 63 (112)
Q Consensus 7 iL~~keedV~kmLa----------AGvHLGt~n~n~q------Me~YIykrr~-DGi~IInL~AArviv~s~rp 63 (112)
-+++++++++.+++ .|+|+|++.-=+- =.++||.|+. .|++|.--..|-||++-..|
T Consensus 36 gF~lspeE~~~I~~~F~d~~~l~~~Gi~l~G~KY~~lr~~~d~d~~~i~gKKg~~G~~i~kT~qaiiI~~y~~~ 109 (150)
T PTZ00316 36 SYIPQPEEVAHILKCLGNFSLVQSSGVTIYGVKFFGLQSGTEGDMKYIFFKKGAAGGCIYTSKQTAIIAVYGNP 109 (150)
T ss_pred CCccCHHHHHHHHHHhcCCccccCCCEEEcceEEEEEEeccCCCcceEEEecCCCeEEEEEcCCEEEEEEeCCc
Confidence 34677778777764 6999997543111 0368898664 68888765566666655443
No 15
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=39.46 E-value=42 Score=23.83 Aligned_cols=54 Identities=7% Similarity=0.175 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHh----------hcceeccccCCccc--ccccccccC-CceeEeehhhheeeeEeecch
Q psy16263 9 SLKEDDVTKMLG----------AQTHIGSENSDYQM--EQYVYKRRN-DGEIFVLVICYRVSLILCNNI 64 (112)
Q Consensus 9 ~~keedV~kmLa----------AGvHLGt~n~n~qM--e~YIykrr~-DGi~IInL~AArviv~s~rp~ 64 (112)
.+++|+++.++. .|+++|++..-+-. ...+|.++. .|+++. ++...+++.-.+.
T Consensus 40 ~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~Ky~~~~~d~~~i~~kk~~~Gv~i~--kT~~aivI~~y~e 106 (129)
T smart00392 40 KITPEEIAAIAALFNSLAAVFSNGLTLGGQKYMVIRADDRSIMGKKGAGGVVIV--KTKQALIIGMYKE 106 (129)
T ss_pred cCCHHHHHHHHHHccCcchhccCCeEECCeEEEEEEecCcEEEeecCCceEEEE--ECCCEEEEEECCC
Confidence 345566666654 48899875442211 346666553 344443 3445555554443
No 16
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=33.58 E-value=20 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.833 Sum_probs=6.7
Q ss_pred hhc-Ccceeeee
Q psy16263 71 LLD-GSKQVWWF 81 (112)
Q Consensus 71 ~f~-~~~~~~~~ 81 (112)
||+ +++..||+
T Consensus 1 mfa~~~~nwwwt 12 (18)
T PF08055_consen 1 MFAHQIQNWWWT 12 (18)
T ss_pred CCcccccceeee
Confidence 577 45556665
No 17
>COG3460 Uncharacterized enzyme of phenylacetate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.13 E-value=14 Score=27.50 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=38.9
Q ss_pred eeccccCCcccccccccccCCceeEeehhhheeeeEeecchhhHHHHhhc
Q psy16263 24 HIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLD 73 (112)
Q Consensus 24 HLGt~n~n~qMe~YIykrr~DGi~IInL~AArviv~s~rp~gq~~v~~f~ 73 (112)
|-+....-..|.+-+|.||+.|+.|-=++.++|.+...-..+|.+-..|.
T Consensus 32 hA~d~emAL~~Ardvf~RR~~~vsiWvVk~s~I~astp~Er~~~~~~l~~ 81 (117)
T COG3460 32 HAPDEEMALMMARDVFTRREEGVSIWVVKSSDIRASTPSERGQWTKDLFD 81 (117)
T ss_pred ecCCHHHHHHHHHHHhhccCcCceEEEeehhhhhccChhhhcccchhccC
Confidence 33444445678899999999999999999998888877777777766665
No 18
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=25.12 E-value=76 Score=20.42 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=28.2
Q ss_pred eeeeEeecchhhHHHHhhc--Ccceeeeec-cchhhhhhhc
Q psy16263 55 RVSLILCNNIWQHMAELLD--GSKQVWWFH-GQVLEVLTMF 92 (112)
Q Consensus 55 rviv~s~rp~gq~~v~~f~--~~~~~~~~~-~~~~~~~~~~ 92 (112)
+|=++++..+|++|..+|. |-+-..... ++|-|+|..+
T Consensus 61 ~v~~vi~~~iG~~a~~~l~~~gI~v~~~~~~~~v~eal~~~ 101 (102)
T cd00562 61 GCDAVLVGGIGGPAAAKLEAAGIKPIKAAEGGTIEEALEAL 101 (102)
T ss_pred CCcEEEEcccCccHHHHHHHcCCEEEEcCCCCcHHHHHHhh
Confidence 6777778889999999998 444444555 6888888653
No 19
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=24.07 E-value=62 Score=21.49 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=23.9
Q ss_pred cccccccCCceeEeehhhh--eeeeEee----cchhhHHHH
Q psy16263 36 QYVYKRRNDGEIFVLVICY--RVSLILC----NNIWQHMAE 70 (112)
Q Consensus 36 ~YIykrr~DGi~IInL~AA--rviv~s~----rp~gq~~v~ 70 (112)
+|.-.+.++|-+-++|+|+ ++|..++ +.-++.+|+
T Consensus 4 kfei~kdk~Ge~rfrlkA~N~eiI~~sEgY~skasa~ngI~ 44 (59)
T COG3422 4 KFEIYKDKAGEYRFRLKAANGEIILTSEGYKSKASAENGIA 44 (59)
T ss_pred eEEEEEcCCCcEEEEEEccCccEEEeecccchhHHHHHHHH
Confidence 3444455599999999986 8998875 334444444
No 20
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=23.79 E-value=51 Score=22.61 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.0
Q ss_pred ccccccccCCceeEeehhhh
Q psy16263 35 EQYVYKRRNDGEIFVLVICY 54 (112)
Q Consensus 35 e~YIykrr~DGi~IInL~AA 54 (112)
+.||--...||+++||.-||
T Consensus 10 ~~yil~~~~~~l~liDqhaA 29 (136)
T smart00853 10 GTYILAESEDGLVLIDQHAA 29 (136)
T ss_pred CEEEEEEcCCCEEEEEhHHH
Confidence 46888888899999999876
No 21
>PF10656 DUF2483: Hypothetical protein of unknown function (DUF2483); InterPro: IPR018918 This entry is represented by Bacteriophage phi ETA, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA Orf16.
Probab=22.35 E-value=40 Score=23.19 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=22.3
Q ss_pred cccccccCCceeEeehhhheeeeEeecchhhHHHHhhc-Ccceeeeecc
Q psy16263 36 QYVYKRRNDGEIFVLVICYRVSLILCNNIWQHMAELLD-GSKQVWWFHG 83 (112)
Q Consensus 36 ~YIykrr~DGi~IInL~AArviv~s~rp~gq~~v~~f~-~~~~~~~~~~ 83 (112)
-|+||.+..|.||-| ||..+.+..+++ ..|.+|=|.|
T Consensus 6 tylik~kD~~lyITN-----------kPt~~~~ti~Yst~rr~Ar~f~G 43 (72)
T PF10656_consen 6 TYLIKHKDNDLYITN-----------KPTEPEDTIKYSTDRRDAREFDG 43 (72)
T ss_pred EEEEEeccCCeEEec-----------CCCCCCcccccccccccccccCC
Confidence 388998888888877 444444444444 3333444444
No 22
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=20.21 E-value=1e+02 Score=19.89 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=28.3
Q ss_pred heeeeEeecchhhHHHHhhc--Ccceeeeeccchhhhhhhc
Q psy16263 54 YRVSLILCNNIWQHMAELLD--GSKQVWWFHGQVLEVLTMF 92 (112)
Q Consensus 54 Arviv~s~rp~gq~~v~~f~--~~~~~~~~~~~~~~~~~~~ 92 (112)
.++=+++++.+|+++..++. |=+-..+..|++-|+|..+
T Consensus 62 ~~v~~vi~~~iG~~~~~~l~~~gI~v~~~~~~~i~~vl~~~ 102 (103)
T cd00851 62 EGVDVVIVGGIGPRALNKLRNAGIKVYKGAEGTVEEAIEAL 102 (103)
T ss_pred cCCCEEEeCCCCcCHHHHHHHCCCEEEEcCCCCHHHHHHhh
Confidence 36777788899999999988 3444444457888888643
No 23
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=20.13 E-value=1.2e+02 Score=19.28 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=31.3
Q ss_pred eeeeEeecchhhHHHHhhc--Ccceeeeeccchhhhhhhc
Q psy16263 55 RVSLILCNNIWQHMAELLD--GSKQVWWFHGQVLEVLTMF 92 (112)
Q Consensus 55 rviv~s~rp~gq~~v~~f~--~~~~~~~~~~~~~~~~~~~ 92 (112)
.|=+++++.+|..+...|. |-+-+.+..|+|-|+|..+
T Consensus 53 ~v~~li~~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~~ 92 (94)
T PF02579_consen 53 GVDVLICGGIGEGAFRALKEAGIKVYQGAGGDIEEALEAY 92 (94)
T ss_dssp TESEEEESCSCHHHHHHHHHTTSEEEESTSSBHHHHHHHH
T ss_pred CCCEEEEeCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHHH
Confidence 7778888999999999988 6677777889988888654
Done!