Query psy16263
Match_columns 112
No_of_seqs 113 out of 399
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 16:57:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_A 40S ribosomal protein S 99.9 1.5E-25 5E-30 178.7 5.8 89 1-94 1-112 (252)
2 3iz6_A 40S ribosomal protein S 99.9 1.2E-25 4E-30 183.5 2.0 89 2-94 6-117 (305)
3 2zkq_b 40S ribosomal protein S 99.9 7.9E-25 2.7E-29 177.6 5.1 90 1-94 1-113 (295)
4 3bch_A 40S ribosomal protein S 99.9 4.2E-24 1.4E-28 170.4 6.2 89 2-94 35-146 (253)
5 2xzm_B RPS0E; ribosome, transl 99.9 1.4E-23 5E-28 165.9 4.7 84 7-94 2-109 (241)
6 3j20_B 30S ribosomal protein S 99.9 2.8E-22 9.7E-27 155.0 5.5 76 14-93 8-105 (202)
7 1vi6_A 30S ribosomal protein S 99.8 2.7E-21 9.4E-26 150.2 6.0 77 13-93 11-109 (208)
8 3bbn_B Ribosomal protein S2; s 99.8 1.2E-19 4.1E-24 142.4 4.2 76 14-94 5-106 (231)
9 3r8n_B 30S ribosomal protein S 99.8 8.2E-20 2.8E-24 142.2 1.7 72 18-94 1-98 (218)
10 2vqe_B 30S ribosomal protein S 99.7 9.6E-20 3.3E-24 145.0 0.4 77 13-94 5-107 (256)
11 3nul_A Profilin I; cytoskeleto 37.2 48 0.0016 22.8 4.3 54 9-64 40-107 (130)
12 3ryk_A DTDP-4-dehydrorhamnose 36.0 10 0.00034 28.8 0.7 33 20-52 8-41 (205)
13 2omk_A Hypothetical protein; s 33.5 22 0.00074 27.0 2.2 21 20-40 8-28 (231)
14 2yx6_A Hypothetical protein PH 26.6 43 0.0015 21.9 2.5 40 55-94 63-104 (121)
15 1eo1_A Hypothetical protein MT 25.0 53 0.0018 21.5 2.8 40 55-94 65-106 (124)
16 3d9y_A Profilin; yeast, actin- 24.7 62 0.0021 22.0 3.1 55 8-64 37-104 (127)
17 1o13_A Probable NIFB protein; 23.7 47 0.0016 22.7 2.3 39 55-93 76-116 (136)
18 2k7i_A UPF0339 protein ATU0232 20.4 45 0.0015 22.1 1.6 33 29-61 17-51 (83)
No 1
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=99.91 E-value=1.5e-25 Score=178.71 Aligned_cols=89 Identities=26% Similarity=0.325 Sum_probs=79.3
Q ss_pred CCCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeec
Q psy16263 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCN 62 (112)
Q Consensus 1 ms~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~r 62 (112)
|| .+++|+++|+|+++||+||+|||+++||++|++|||++|+||+|||||. | ++|++++.|
T Consensus 1 ~~-~~~~l~~~e~~v~~lL~AGvH~G~~~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~vlfVgTk 79 (252)
T 3u5c_A 1 MS-LPATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSR 79 (252)
T ss_dssp -C-CCSSCSCCHHHHHHHHHHTTTEECSSCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTSSSGGGEEEEECS
T ss_pred CC-cchhcccCHHHHHHHHHCCeeccCCcCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44 5899999999999999999999999999999999999999999999995 2 289999999
Q ss_pred chhhHHHHhhc---Ccc--eeeeeccchhhhhhhccc
Q psy16263 63 NIWQHMAELLD---GSK--QVWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 63 p~gq~~v~~f~---~~~--~~~~~~~~~~~~~~~~~~ 94 (112)
+++|++|.+|+ |.. .-||++|+ ||||.-
T Consensus 80 ~~~q~~V~k~A~~~g~~~v~~rwlgGt----LTN~~t 112 (252)
T 3u5c_A 80 TFGQRAVLKFAAHTGATPIAGRFTPGS----FTNYIT 112 (252)
T ss_dssp HHHHHHHHHHHHHSSCEEEESCCCTTS----SSCTTS
T ss_pred cHHHHHHHHHHHHhCCceecCcccCCc----ccChhh
Confidence 99999999999 222 23799999 999875
No 2
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.91 E-value=1.2e-25 Score=183.54 Aligned_cols=89 Identities=29% Similarity=0.406 Sum_probs=80.3
Q ss_pred CCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeecc
Q psy16263 2 SGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNN 63 (112)
Q Consensus 2 s~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp 63 (112)
++++++|+++|+|+++||+||+|||++++|++|++|||++|+||||||||. | ++|++++.|+
T Consensus 6 ~~~~~~l~~ke~dv~kLLaAGvH~Gt~~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i~~~~~ILfVgTk~ 85 (305)
T 3iz6_A 6 GAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARP 85 (305)
T ss_dssp CSSCCCCSSCCSCCCCHHHHHHSSCBSCCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHTTSSCCEEEECCSH
T ss_pred ccccccccccHHHHHHHHHcCeeccCCcCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcH
Confidence 567899999999999999999999999999999999999999999999995 2 2899999999
Q ss_pred hhhHHHHhhc---Ccc--eeeeeccchhhhhhhccc
Q psy16263 64 IWQHMAELLD---GSK--QVWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 64 ~gq~~v~~f~---~~~--~~~~~~~~~~~~~~~~~~ 94 (112)
++|++|.+|+ |.. .-||++|+ ||||.-
T Consensus 86 ~aq~aV~k~A~~tG~~yV~~RWlgGt----LTN~~t 117 (305)
T 3iz6_A 86 YGQRAVLKFAQYTGAHAIAGRHTPGT----FTNQLQ 117 (305)
T ss_dssp HHHHHHHHHHHHHTCEEECSCCCTTT----TTTTTT
T ss_pred HHHHHHHHHHHHhCCccccCcccCCc----ccCccc
Confidence 9999999999 222 23899999 999875
No 3
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.90 E-value=7.9e-25 Score=177.64 Aligned_cols=90 Identities=40% Similarity=0.600 Sum_probs=69.3
Q ss_pred CCCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeec
Q psy16263 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCN 62 (112)
Q Consensus 1 ms~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~r 62 (112)
||+++++++++++++++||+||+|+|++++|++|++|||++|+||+|||||. | .+|++++.|
T Consensus 1 m~~~~~~l~~~~~~~~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~i~~~~~ILfVgTk 80 (295)
T 2zkq_b 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSR 80 (295)
T ss_dssp ------------CCHHHHHHHTTTBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSSCGGGEEEEECS
T ss_pred CCCccccccccHHHHHHHHhcCEEecCCcCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 7889999999999999999999999999999999999999999999999995 2 289999999
Q ss_pred chhhHHHHhhc---Cccee--eeeccchhhhhhhccc
Q psy16263 63 NIWQHMAELLD---GSKQV--WWFHGQVLEVLTMFHN 94 (112)
Q Consensus 63 p~gq~~v~~f~---~~~~~--~~~~~~~~~~~~~~~~ 94 (112)
+++|++|++|+ |..-+ ||.+|+ |||+.-
T Consensus 81 ~~aq~~V~k~A~~~g~~yv~~RWlgG~----LTN~~t 113 (295)
T 2zkq_b 81 NTGQRAVLKFAAATGATPIAGRFTPGT----FTNQIQ 113 (295)
T ss_dssp HHHHHHHHHHHHHHCCEEEESSCCCC-----CCCTTC
T ss_pred HHHHHHHHHHHHHhCCceecceEeccc----ccCccc
Confidence 99999999998 33322 899999 999864
No 4
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=99.89 E-value=4.2e-24 Score=170.37 Aligned_cols=89 Identities=39% Similarity=0.567 Sum_probs=74.3
Q ss_pred CCcccccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeecc
Q psy16263 2 SGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNN 63 (112)
Q Consensus 2 s~~~~iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp 63 (112)
|+++++++++|+++++||+||+|+|+++||++|++|||++|+||+|||||. | ++|++++.|+
T Consensus 35 ~~~~~~l~~k~~~v~~LL~AgvH~Gh~~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~ 114 (253)
T 3bch_A 35 SGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVAIENPADVSVISSRN 114 (253)
T ss_dssp -------CCCHHHHHHHHHHTTTBCCSCCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHTCSSGGGEEEEECSH
T ss_pred ccCCccccCcHHHHHHHHHcCEEecCCcCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 457889999999999999999999999999999999999999999999995 2 2799999999
Q ss_pred hhhHHHHhhc---Ccce--eeeeccchhhhhhhccc
Q psy16263 64 IWQHMAELLD---GSKQ--VWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 64 ~gq~~v~~f~---~~~~--~~~~~~~~~~~~~~~~~ 94 (112)
++|++|.+|| |..- -||.+|+ |||+.-
T Consensus 115 ~aq~~V~~~A~~~g~~yv~~RWlgG~----LTN~~~ 146 (253)
T 3bch_A 115 TGQRAVLKFAAATGATPIAGRFTPGT----FTNQIQ 146 (253)
T ss_dssp HHHHHHHHHHHHHCCEEEESCCCTTT----TTCCSC
T ss_pred HHHHHHHHHHHHhCCeeecceecCCc----ccCccc
Confidence 9999999998 3332 3899999 999864
No 5
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=99.88 E-value=1.4e-23 Score=165.93 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=76.7
Q ss_pred ccCCCHHHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h----------heeeeEeecchhhHH
Q psy16263 7 ILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C----------YRVSLILCNNIWQHM 68 (112)
Q Consensus 7 iL~~keedV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A----------Arviv~s~rp~gq~~ 68 (112)
+|+|++.++++||+||+|+|+++||++|++|||++|+||+|||||. | ++|++++.|+++|++
T Consensus 2 ~~~m~~~~~~~lL~AgvH~G~~~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~ 81 (241)
T 2xzm_B 2 ATQRKQDDIKRLLASNCHQATINLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRA 81 (241)
T ss_dssp CCHHHHHHHHHHHHTTTTEECSCCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHH
T ss_pred cccccHHHHHHHHhcCeEeccCcCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 5788999999999999999999999999999999999999999995 2 289999999999999
Q ss_pred HHhhc---Cccee---eeeccchhhhhhhccc
Q psy16263 69 AELLD---GSKQV---WWFHGQVLEVLTMFHN 94 (112)
Q Consensus 69 v~~f~---~~~~~---~~~~~~~~~~~~~~~~ 94 (112)
|.+|| |..-+ ||.+|+ |||+.-
T Consensus 82 V~~~A~~~g~~yv~~~RWlgG~----LTN~~t 109 (241)
T 2xzm_B 82 AIKFAGYTHCKSTSSSRWTPGT----LTNYQT 109 (241)
T ss_dssp HHHHHHHHTCBCCCCSSCCTTT----TTCTTC
T ss_pred HHHHHHHhCCEEeccccccCCc----ccCccc
Confidence 99998 66656 999999 999865
No 6
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.85 E-value=2.8e-22 Score=155.03 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=68.4
Q ss_pred HHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h---------heeeeEeecchhhHHHHhhc---
Q psy16263 14 DVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C---------YRVSLILCNNIWQHMAELLD--- 73 (112)
Q Consensus 14 dV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A---------Arviv~s~rp~gq~~v~~f~--- 73 (112)
.+++||+||+|+|++++|++|+||||++|+||+|||||. | ++|++++.|+++|++|.+||
T Consensus 8 ~~~~lL~AgvH~Gh~~~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~ 87 (202)
T 3j20_B 8 PLDQYLAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFEPQSILAVSVRLYGQKPVKKFGEVT 87 (202)
T ss_dssp HHHHHHHHTCSBCCSCCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHSCSSCEEEECCCTTTHHHHHHHHHHH
T ss_pred cHHHHHhcCccccCCcCCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhhCCCeEEEEecChHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999995 2 38999999999999999999
Q ss_pred Cc--ceeeeeccchhhhhhhcc
Q psy16263 74 GS--KQVWWFHGQVLEVLTMFH 93 (112)
Q Consensus 74 ~~--~~~~~~~~~~~~~~~~~~ 93 (112)
|. -.-||++|+ ||||.
T Consensus 88 g~~~v~~rw~gG~----lTN~~ 105 (202)
T 3j20_B 88 GARAIPGRFLPGT----MTNPA 105 (202)
T ss_dssp SCCCCCSSCCSSS----SSCSS
T ss_pred CCceeCceecCCC----cccHh
Confidence 22 234899999 99986
No 7
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=99.83 E-value=2.7e-21 Score=150.18 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=69.6
Q ss_pred HHHHHHHhhcceeccccCCcccccccccccCCceeEeehh--------h---------heeeeEeecchhhHHHHhhc--
Q psy16263 13 DDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVI--------C---------YRVSLILCNNIWQHMAELLD-- 73 (112)
Q Consensus 13 edV~kmLaAGvHLGt~n~n~qMe~YIykrr~DGi~IInL~--------A---------Arviv~s~rp~gq~~v~~f~-- 73 (112)
.++++||+||+|+|++++|++|+||||++|+||+|||||. | ++|++++.|+++|++|.+||
T Consensus 11 ~~~~~lL~AgvH~Gh~~~npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i~~~~iLfVgTk~~~~~~V~~~A~~ 90 (208)
T 1vi6_A 11 VPPDDYLAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKV 90 (208)
T ss_dssp SCHHHHHHHTTTBCCSCCCTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHH
T ss_pred hhHHHHHhcCeEEcCCcCCCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999996 2 38999999999999999998
Q ss_pred -Cccee--eeeccchhhhhhhcc
Q psy16263 74 -GSKQV--WWFHGQVLEVLTMFH 93 (112)
Q Consensus 74 -~~~~~--~~~~~~~~~~~~~~~ 93 (112)
|..-+ ||.+|+ |||+.
T Consensus 91 ~g~~~v~~rwlgG~----LTN~~ 109 (208)
T 1vi6_A 91 VGSDYIVGRFIPGT----LTNPM 109 (208)
T ss_dssp HCCEEEESSCCTTT----TTCTT
T ss_pred hCCeeecCEECCCc----ccChh
Confidence 44333 899999 99987
No 8
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.77 E-value=1.2e-19 Score=142.42 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=67.3
Q ss_pred HHHHHHhhcceecc--ccCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhh
Q psy16263 14 DVTKMLGAQTHIGS--ENSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELL 72 (112)
Q Consensus 14 dV~kmLaAGvHLGt--~n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f 72 (112)
++++||+||+|+|+ ++||++|+||||++| ||+|||||. | .+|+.++.++++|++|.+|
T Consensus 5 ~~~~lL~agvH~Gh~t~~wnpkM~~yIy~~R-ngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~ 83 (231)
T 3bbn_B 5 NLEEMMEAGVHFGHGTRKWNPRMSPYISAKC-KGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARA 83 (231)
T ss_dssp SSHHHHHTSSSSCCCSSCCCGGGGGGEEEEE-TTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHH
T ss_pred CHHHHHHhCeEecCCcCcCCcccccceeccc-CCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHH
Confidence 67899999999995 789999999999999 999999995 2 1899999999999999999
Q ss_pred c---Cccee--eeeccchhhhhhhccc
Q psy16263 73 D---GSKQV--WWFHGQVLEVLTMFHN 94 (112)
Q Consensus 73 ~---~~~~~--~~~~~~~~~~~~~~~~ 94 (112)
| |.--+ ||.+|+ |||+..
T Consensus 84 A~~~g~~yv~~rWlgG~----LTN~~t 106 (231)
T 3bbn_B 84 AIRARCHYVNKKWLGGM----LTNWST 106 (231)
T ss_dssp HHHHTCEECCSSCCSCS----SSCHHH
T ss_pred HHHhCCccccccccCCC----CcCHHH
Confidence 8 44344 899999 999874
No 9
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=99.76 E-value=8.2e-20 Score=142.22 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=62.9
Q ss_pred HHhhcceecccc--CCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHhhc---
Q psy16263 18 MLGAQTHIGSEN--SDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAELLD--- 73 (112)
Q Consensus 18 mLaAGvHLGt~n--~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~f~--- 73 (112)
||+||+|+|+++ ||++|+||||++| ||+|||||. | ++|+.++.|+++|++|.+||
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R-~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~ 79 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGAR-NKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSC 79 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCT-TSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHS
T ss_pred CccccccccCCCCCCCCCccccccccc-CCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHc
Confidence 689999999776 9999999999999 899999995 2 28999999999999999999
Q ss_pred Ccce--eeeeccchhhhhhhccc
Q psy16263 74 GSKQ--VWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 74 ~~~~--~~~~~~~~~~~~~~~~~ 94 (112)
|.-- -||.+|+ ||||.-
T Consensus 80 g~~yv~~rWlgG~----LTN~~t 98 (218)
T 3r8n_B 80 DQFFVNHRWLGGM----LTNWKT 98 (218)
T ss_dssp SCCEECSSCCSSS----STTTTT
T ss_pred CCeeECCccCCCC----ccCHHH
Confidence 3332 3899999 999974
No 10
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=99.75 E-value=9.6e-20 Score=145.01 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=66.8
Q ss_pred HHHHHHHhhcceeccc--cCCcccccccccccCCceeEeehh--------h-----------heeeeEeecchhhHHHHh
Q psy16263 13 DDVTKMLGAQTHIGSE--NSDYQMEQYVYKRRNDGEIFVLVI--------C-----------YRVSLILCNNIWQHMAEL 71 (112)
Q Consensus 13 edV~kmLaAGvHLGt~--n~n~qMe~YIykrr~DGi~IInL~--------A-----------Arviv~s~rp~gq~~v~~ 71 (112)
.++++||+||+|+|++ +||++|++|||++| ||+|||||. | .+|+.|+.++++|++|.+
T Consensus 5 i~~~~LL~AgvH~Gh~t~~wnpkM~~YIyg~R-ngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~ 83 (256)
T 2vqe_B 5 ITVKELLEAGVHFGHERKRWNPKFARYIYAER-NGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRM 83 (256)
T ss_dssp -CCCSTTCSSTTCCCBSSSCCGGGSTTEEEEE-TTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTT
T ss_pred ccHHHHHHcCeeeccCcCCCCCccccceeccc-CCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence 4678899999999974 88999999999999 999999995 2 189999999999999999
Q ss_pred hc---Cccee--eeeccchhhhhhhccc
Q psy16263 72 LD---GSKQV--WWFHGQVLEVLTMFHN 94 (112)
Q Consensus 72 f~---~~~~~--~~~~~~~~~~~~~~~~ 94 (112)
|| |.--+ ||.+|+ |||+.-
T Consensus 84 ~A~~~g~~yv~~RWlgG~----LTN~~t 107 (256)
T 2vqe_B 84 EAERAGMPYVNQRWLGGM----LTNFKT 107 (256)
T ss_dssp TTTSSSCCEECSCCCTTT----TTTHHH
T ss_pred HHHHhCCeeecCeeCCCc----ccCHHH
Confidence 98 33334 899999 999874
No 11
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=37.20 E-value=48 Score=22.76 Aligned_cols=54 Identities=9% Similarity=0.057 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHh----------hcceeccccCCccc---cccccc-ccCCceeEeehhhheeeeEeecch
Q psy16263 9 SLKEDDVTKMLG----------AQTHIGSENSDYQM---EQYVYK-RRNDGEIFVLVICYRVSLILCNNI 64 (112)
Q Consensus 9 ~~keedV~kmLa----------AGvHLGt~n~n~qM---e~YIyk-rr~DGi~IInL~AArviv~s~rp~ 64 (112)
+++++++..+.. .|.|+|++.+-.-- ...||. +.+.|+.|. ++...+++.-.+.
T Consensus 40 ~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~~i~~kkg~~Gv~i~--kT~~aivig~y~e 107 (130)
T 3nul_A 40 QLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIK--KTNQALVFGFYDE 107 (130)
T ss_dssp CCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEEEEE--ECSSEEEEEEECT
T ss_pred cCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCCcEEEEecCCCeEEEE--ECCCEEEEEEcCC
Confidence 667777777655 58999975542111 235784 444566664 4555555554443
No 12
>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}
Probab=36.00 E-value=10 Score=28.83 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=12.1
Q ss_pred hhcceeccccCCccccccccc-ccCCceeEeehh
Q psy16263 20 GAQTHIGSENSDYQMEQYVYK-RRNDGEIFVLVI 52 (112)
Q Consensus 20 aAGvHLGt~n~n~qMe~YIyk-rr~DGi~IInL~ 52 (112)
..|+-||+.||-++|....+. ..=+|+.+|.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~m~~~~t~I~gv~ii~p~ 41 (205)
T 3ryk_A 8 SSGVDLGTENLYFQSNAMKVIETNFTDAKLLEPR 41 (205)
T ss_dssp ----------------CCEEEEEETTTEEEEECC
T ss_pred ccccccCccchhheecccEEEECCCCCEEEEeCC
Confidence 468999999999999975444 344899999886
No 13
>2omk_A Hypothetical protein; succinimide, thiamin pyrophosphokinase, structural genomics, protein structure initiative; 1.80A {Bacteroides thetaiotaomicron}
Probab=33.50 E-value=22 Score=27.01 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=17.4
Q ss_pred hhcceeccccCCccccccccc
Q psy16263 20 GAQTHIGSENSDYQMEQYVYK 40 (112)
Q Consensus 20 aAGvHLGt~n~n~qMe~YIyk 40 (112)
..|+-+|+.|+.+|+.|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (231)
T 2omk_A 8 SSGVDLGTENLYFQSNAMINE 28 (231)
T ss_dssp --CCBCGGGGTSSSCSSCCSC
T ss_pred ccccccCcceeeecccccCCC
Confidence 468999999999999998865
No 14
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=26.64 E-value=43 Score=21.89 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=32.5
Q ss_pred eeeeEeecchhhHHHHhhc--Ccceeeeeccchhhhhhhccc
Q psy16263 55 RVSLILCNNIWQHMAELLD--GSKQVWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 55 rviv~s~rp~gq~~v~~f~--~~~~~~~~~~~~~~~~~~~~~ 94 (112)
.|=++++..+|.+|..+|. |-+-+....|+|-|+|..+-+
T Consensus 63 gv~~vi~~~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~ 104 (121)
T 2yx6_A 63 GAKIVLTYGIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIG 104 (121)
T ss_dssp TCCEEECSBCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHT
T ss_pred CCCEEEECCCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHc
Confidence 6777888899999999997 556666678999999987753
No 15
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=24.98 E-value=53 Score=21.53 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=32.8
Q ss_pred eeeeEeecchhhHHHHhhc--Ccceeeeeccchhhhhhhccc
Q psy16263 55 RVSLILCNNIWQHMAELLD--GSKQVWWFHGQVLEVLTMFHN 94 (112)
Q Consensus 55 rviv~s~rp~gq~~v~~f~--~~~~~~~~~~~~~~~~~~~~~ 94 (112)
.|=++++..+|..|..+|. |-+-+....|+|-|+|..+-+
T Consensus 65 gv~~vi~~~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~ 106 (124)
T 1eo1_A 65 GVKAVIASSPGPNAFEVLNELGIKIYRATGTSVEENLKLFTE 106 (124)
T ss_dssp TCCEEEECCSSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHT
T ss_pred CCCEEEECCcCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHh
Confidence 4667778889999999997 667777788999999987654
No 16
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=24.67 E-value=62 Score=21.97 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHH----------hhcceeccccCCc-cc-cccccccc-CCceeEeehhhheeeeEeecch
Q psy16263 8 LSLKEDDVTKML----------GAQTHIGSENSDY-QM-EQYVYKRR-NDGEIFVLVICYRVSLILCNNI 64 (112)
Q Consensus 8 L~~keedV~kmL----------aAGvHLGt~n~n~-qM-e~YIykrr-~DGi~IInL~AArviv~s~rp~ 64 (112)
++++++++..+. ..|.|+|++..-. +- ++.||.++ +.|+.|. ++...+++.-.+.
T Consensus 37 f~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d~~~i~~kkg~~Gv~i~--kT~~aivi~~y~e 104 (127)
T 3d9y_A 37 FNLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAEGRSIYGKLQKEGIICV--ATKLCILVSHYPE 104 (127)
T ss_dssp CCCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEECSSEEEEEETTEEEEEE--ECSSEEEEEEECT
T ss_pred CccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeCcceEEEEcCCceEEEE--ECCCEEEEEEcCC
Confidence 466777666664 4689999755421 11 34577655 3455543 4555555555443
No 17
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=23.68 E-value=47 Score=22.71 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=32.4
Q ss_pred eeeeEeecchhhHHHHhhc--Ccceeeeeccchhhhhhhcc
Q psy16263 55 RVSLILCNNIWQHMAELLD--GSKQVWWFHGQVLEVLTMFH 93 (112)
Q Consensus 55 rviv~s~rp~gq~~v~~f~--~~~~~~~~~~~~~~~~~~~~ 93 (112)
.|=++++..+|.+|..+|. |-+-+....|+|-|+|..+-
T Consensus 76 gv~vVI~g~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~ 116 (136)
T 1o13_A 76 GAELVIVRGIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYL 116 (136)
T ss_dssp TCSEEECSCCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHH
Confidence 6777888899999999997 66667777899999998764
No 18
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=20.40 E-value=45 Score=22.11 Aligned_cols=33 Identities=9% Similarity=-0.118 Sum_probs=22.4
Q ss_pred cCCcccccccccccCCceeEeehhhh--eeeeEee
Q psy16263 29 NSDYQMEQYVYKRRNDGEIFVLVICY--RVSLILC 61 (112)
Q Consensus 29 n~n~qMe~YIykrr~DGi~IInL~AA--rviv~s~ 61 (112)
.+...|..|..++.++|-+-++|+|+ +||+.++
T Consensus 17 ~~~~~MagFEi~k~~~Gq~rFrLkA~NGevIasSe 51 (83)
T 2k7i_A 17 LYFQGMYKFEIYQDKAGEYRFRFKASNGETMFSSE 51 (83)
T ss_dssp -----CCEEEEEECTTSCEEEEECCTTSCCCEEBC
T ss_pred ccccccccEEEEEcCCCCEEEEEEECCCCEEEECC
Confidence 34566865766677799999999976 8888655
Done!