Your job contains 1 sequence.
>psy16263
MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVLVICYRVSLIL
CNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSALVQILPHSTRKSSL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy16263
(112 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0003517 - symbol:sta "stubarista" species:7227 "Dr... 192 5.2e-15 1
RGD|71026 - symbol:Rpsa "ribosomal protein SA" species:10... 170 1.4e-12 1
UNIPROTKB|P50890 - symbol:RPSA "40S ribosomal protein SA"... 170 1.4e-12 1
UNIPROTKB|Q6P8D1 - symbol:rpsa "40S ribosomal protein SA"... 170 1.6e-12 1
ZFIN|ZDB-GENE-040426-811 - symbol:rpsa "ribosomal protein... 170 1.6e-12 1
UNIPROTKB|C9J9K3 - symbol:RPSA "40S ribosomal protein SA"... 164 3.8e-12 1
UNIPROTKB|P26452 - symbol:RPSA "40S ribosomal protein SA"... 164 6.7e-12 1
UNIPROTKB|J9JHJ2 - symbol:RPSA "Uncharacterized protein" ... 164 6.7e-12 1
UNIPROTKB|P08865 - symbol:RPSA "40S ribosomal protein SA"... 164 6.7e-12 1
UNIPROTKB|Q4GWZ2 - symbol:RPSA "40S ribosomal protein SA"... 164 6.7e-12 1
UNIPROTKB|A6YRY8 - symbol:RPSA "40S ribosomal protein SA"... 164 6.7e-12 1
UNIPROTKB|P38982 - symbol:Rpsa "40S ribosomal protein SA"... 164 6.7e-12 1
UNIPROTKB|Q2L9X0 - symbol:RPSA "40S ribosomal protein SA"... 164 6.7e-12 1
MGI|MGI:105381 - symbol:Rpsa "ribosomal protein SA" speci... 164 6.7e-12 1
UNIPROTKB|E2RJ06 - symbol:RPSA "Uncharacterized protein" ... 164 8.4e-12 1
UNIPROTKB|C9JQR9 - symbol:RPSAP58 "Protein RPSAP58" speci... 159 1.0e-11 1
UNIPROTKB|A6NE09 - symbol:RPSAP58 "Protein RPSAP58" speci... 159 2.5e-11 1
UNIPROTKB|I3LC48 - symbol:RPSA "40S ribosomal protein SA"... 151 1.9e-10 1
ZFIN|ZDB-GENE-050417-382 - symbol:zgc:110181 "zgc:110181"... 138 5.6e-09 1
WB|WBGene00004469 - symbol:rps-0 species:6239 "Caenorhabd... 135 1.0e-08 1
UNIPROTKB|P46769 - symbol:rps-0 "40S ribosomal protein SA... 135 1.0e-08 1
UNIPROTKB|J9P9K4 - symbol:J9P9K4 "Uncharacterized protein... 134 1.2e-08 1
UNIPROTKB|Q8H3I3 - symbol:B1056G08.113 "Os07g0616600 prot... 129 6.2e-08 1
UNIPROTKB|A8IB25 - symbol:CHLREDRAFT_126059 "40S ribosoma... 127 8.2e-08 1
TAIR|locus:2193997 - symbol:P40 "AT1G72370" species:3702 ... 127 9.6e-08 1
UNIPROTKB|D4A495 - symbol:D4A495 "Uncharacterized protein... 98 1.2e-07 2
TAIR|locus:2084988 - symbol:RPSAb "AT3G04770" species:370... 122 4.3e-07 1
UNIPROTKB|F1S1E3 - symbol:F1S1E3 "Uncharacterized protein... 114 2.4e-06 1
POMBASE|SPAPJ698.02c - symbol:rps002 "40S ribosomal prote... 113 3.1e-06 1
DICTYBASE|DDB_G0270316 - symbol:rpsA "40S ribosomal prote... 110 4.6e-06 1
POMBASE|SPBC685.06 - symbol:rps001 "40S ribosomal protein... 108 1.2e-05 1
UNIPROTKB|Q7RBT0 - symbol:PY06059 "40S ribosomal protein ... 93 0.00042 1
GENEDB_PFALCIPARUM|PF10_0264 - symbol:PF10_0264 "40S ribo... 92 0.00054 1
UNIPROTKB|Q8IJD4 - symbol:PF10_0264 "40S ribosomal protei... 92 0.00054 1
>FB|FBgn0003517 [details] [associations]
symbol:sta "stubarista" species:7227 "Drosophila
melanogaster" [GO:0003735 "structural constituent of ribosome"
evidence=ISS;IBA;IDA;NAS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS;IBA;NAS] [GO:0006412 "translation"
evidence=ISS;IBA;NAS] [GO:0043022 "ribosome binding" evidence=IPI]
[GO:0005840 "ribosome" evidence=NAS;IDA] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0000022 "mitotic spindle elongation"
evidence=IMP] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0006407 "rRNA export from nucleus" evidence=IBA]
[GO:0000028 "ribosomal small subunit assembly" evidence=IBA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA] [GO:0030686 "90S
preribosome" evidence=IBA] [GO:0000461 "endonucleolytic cleavage to
generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IBA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0007275 GO:GO:0005634 GO:GO:0005875
GO:GO:0005811 GO:GO:0006412 EMBL:AE014298 GO:GO:0043022
GO:GO:0003735 GO:GO:0000022 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 ChiTaRS:EMD GO:GO:0006407 EMBL:AL031027
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 GeneTree:ENSGT00390000015036 EMBL:M90422
EMBL:AY118899 EMBL:BT029094 EMBL:M77133 PIR:T13602
RefSeq:NP_476750.1 RefSeq:NP_726744.1 RefSeq:NP_726745.2
UniGene:Dm.33985 UniGene:Dm.4723 ProteinModelPortal:P38979
SMR:P38979 DIP:DIP-17178N IntAct:P38979 MINT:MINT-1635735
STRING:P38979 PaxDb:P38979 PRIDE:P38979 EnsemblMetazoa:FBtr0070291
GeneID:31106 KEGG:dme:Dmel_CG14792 CTD:104044 FlyBase:FBgn0003517
InParanoid:P38979 OrthoDB:EOG4ZCRMJ PhylomeDB:P38979
GenomeRNAi:31106 NextBio:771969 Bgee:P38979 GermOnline:CG14792
Uniprot:P38979
Length = 313
Score = 192 (72.6 bits), Expect = 5.2e-15, P = 5.2e-15
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
MSGGLDILSLKEDD+TKML A TH+GSEN ++QMEQYVYKRR DG
Sbjct: 44 MSGGLDILSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADG 88
>RGD|71026 [details] [associations]
symbol:Rpsa "ribosomal protein SA" species:10116 "Rattus
norvegicus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0005055 "laminin receptor activity" evidence=TAS] [GO:0005198
"structural molecule activity" evidence=IC] [GO:0005604 "basement
membrane" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=ISO;ISS]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0015935 "small ribosomal subunit"
evidence=ISO] [GO:0016020 "membrane" evidence=IDA] [GO:0016337
"cell-cell adhesion" evidence=IDA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=ISO;IDA] [GO:0030686 "90S preribosome"
evidence=IBA] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] [GO:0031012 "extracellular matrix" evidence=IDA]
[GO:0043022 "ribosome binding" evidence=ISO] [GO:0043025 "neuronal
cell body" evidence=IDA] [GO:0043236 "laminin binding" evidence=ISO]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
RGD:71026 GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0043025
GO:GO:0003735 GO:GO:0016337 GO:GO:0005604 GO:GO:0000028
GO:GO:0030855 GO:GO:0005055 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 EMBL:D25224 EMBL:FJ386454
EMBL:BC060578 EMBL:U04942 EMBL:M27798 IPI:IPI00215107 PIR:S42405
RefSeq:NP_058834.1 UniGene:Rn.121972 UniGene:Rn.161973
UniGene:Rn.999 ProteinModelPortal:P38983 SMR:P38983 IntAct:P38983
MINT:MINT-4568881 STRING:P38983 PhosphoSite:P38983 PRIDE:P38983
DNASU:29236 Ensembl:ENSRNOT00000025225 GeneID:29236 KEGG:rno:29236
UCSC:RGD:71026 InParanoid:P38983 NextBio:608498
Genevestigator:P38983 GermOnline:ENSRNOG00000018645 Uniprot:P38983
Length = 295
Score = 170 (64.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSGGLD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|P50890 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9031 "Gallus
gallus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0006412
"translation" evidence=IBA] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IBA] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0043236 "laminin binding" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0043236
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 EMBL:X94368 IPI:IPI00590239
RefSeq:NP_001007824.1 UniGene:Gga.34355 ProteinModelPortal:P50890
SMR:P50890 IntAct:P50890 STRING:P50890 PRIDE:P50890
Ensembl:ENSGALT00000019495 GeneID:395181 KEGG:gga:395181
InParanoid:P50890 NextBio:20815271 ArrayExpress:P50890
Uniprot:P50890
Length = 296
Score = 170 (64.9 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSGGLD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|Q6P8D1 [details] [associations]
symbol:rpsa "40S ribosomal protein SA" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000028 "ribosomal small
subunit assembly" evidence=ISS] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634 GO:GO:0006412
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015
GeneTree:ENSGT00390000015036 HSSP:O29132 CTD:3921 OrthoDB:EOG40ZQZ6
HAMAP:MF_03016 EMBL:CR942700 EMBL:BC061298 EMBL:BC168799
RefSeq:NP_989068.1 UniGene:Str.6703 ProteinModelPortal:Q6P8D1
SMR:Q6P8D1 STRING:Q6P8D1 PRIDE:Q6P8D1 Ensembl:ENSXETT00000057070
GeneID:394665 KEGG:xtr:394665 Xenbase:XB-GENE-972235
InParanoid:Q6P8D1 OMA:XIEKEEQ Bgee:Q6P8D1 Uniprot:Q6P8D1
Length = 306
Score = 170 (64.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSGGLD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>ZFIN|ZDB-GENE-040426-811 [details] [associations]
symbol:rpsa "ribosomal protein SA" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA;IBA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;IBA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IBA] [GO:0000028 "ribosomal small subunit
assembly" evidence=IBA] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 ZFIN:ZDB-GENE-040426-811 GO:GO:0005886
GO:GO:0005634 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
OMA:ENVNFQM HAMAP:MF_03015 GeneTree:ENSGT00390000015036 HSSP:O29132
CTD:3921 HAMAP:MF_03016 EMBL:AY391434 EMBL:BC044504 EMBL:BC062859
IPI:IPI00508284 RefSeq:NP_957346.1 UniGene:Dr.75127
ProteinModelPortal:Q803F6 SMR:Q803F6 STRING:Q803F6 PRIDE:Q803F6
Ensembl:ENSDART00000135945 GeneID:394027 KEGG:dre:394027
InParanoid:Q803F6 NextBio:20814990 ArrayExpress:Q803F6 Bgee:Q803F6
Uniprot:Q803F6
Length = 308
Score = 170 (64.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSGGLD+L +KE+DV K L A TH+G N D+QMEQYVYKR++DG ++++
Sbjct: 1 MSGGLDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYVYKRKSDG-VYII 49
>UNIPROTKB|C9J9K3 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 HGNC:HGNC:6502 ChiTaRS:RPSA
EMBL:AC099332 IPI:IPI00927101 ProteinModelPortal:C9J9K3 SMR:C9J9K3
STRING:C9J9K3 PRIDE:C9J9K3 Ensembl:ENST00000458478
ArrayExpress:C9J9K3 Bgee:C9J9K3 Uniprot:C9J9K3
Length = 264
Score = 164 (62.8 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|P26452 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9913 "Bos
taurus" [GO:0016020 "membrane" evidence=IDA] [GO:0005886 "plasma
membrane" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043236 "laminin binding" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0006407 "rRNA export from nucleus" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0000461
"endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISS] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=ISS] [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0043236
GO:GO:0003735 GO:GO:0000028 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 EMBL:M64923 EMBL:BC102490
IPI:IPI00709865 PIR:A38464 RefSeq:NP_776804.1 UniGene:Bt.49711
ProteinModelPortal:P26452 SMR:P26452 STRING:P26452 PRIDE:P26452
Ensembl:ENSBTAT00000012866 GeneID:281898 KEGG:bta:281898 CTD:3921
HOVERGEN:HBG054466 InParanoid:P26452 OrthoDB:EOG40ZQZ6
NextBio:20805794 ArrayExpress:P26452 HAMAP:MF_03016 Uniprot:P26452
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|J9JHJ2 [details] [associations]
symbol:RPSA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998
GeneTree:ENSGT00390000015036 CTD:3921 EMBL:AAEX03013498
RefSeq:NP_001239159.1 ProteinModelPortal:J9JHJ2
Ensembl:ENSCAFT00000048108 GeneID:477029 KEGG:cfa:477029
Uniprot:J9JHJ2
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|P08865 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9606 "Homo
sapiens" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0030686
"90S preribosome" evidence=IBA] [GO:0005634 "nucleus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA;TAS] [GO:0043022 "ribosome
binding" evidence=IPI] [GO:0022627 "cytosolic small ribosomal
subunit" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0007155 "cell
adhesion" evidence=NAS] [GO:0006412 "translation" evidence=IC;TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0000184
GO:GO:0006413 GO:GO:0007155 GO:GO:0043022 GO:GO:0003735
GO:GO:0000028 GO:GO:0030686 GO:GO:0000447 GO:GO:0006415
GO:GO:0006414 GO:GO:0022627 Reactome:REACT_1762 GO:GO:0006614
GO:GO:0019083 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
KO:K02998 HAMAP:MF_03015 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 EMBL:J03799 EMBL:X15005
EMBL:S37431 EMBL:U43901 EMBL:AF503367 EMBL:BT007219 EMBL:BC005391
EMBL:BC008867 EMBL:BC010418 EMBL:BC013827 EMBL:BC034537
EMBL:BC050688 EMBL:BC053370 EMBL:BC062714 EMBL:BC066941
EMBL:BC068062 EMBL:BC070263 EMBL:BC071693 EMBL:BC071968
EMBL:BC071969 EMBL:BC071970 EMBL:BC073863 EMBL:BC107567 EMBL:X61156
EMBL:U36484 EMBL:M14199 EMBL:AB007146 IPI:IPI00553164 PIR:A31233
RefSeq:NP_001012321.1 RefSeq:NP_002286.2 UniGene:Hs.449909 PDB:3BCH
PDBsum:3BCH ProteinModelPortal:P08865 SMR:P08865 IntAct:P08865
MINT:MINT-1402850 STRING:P08865 PhosphoSite:P08865 DMDM:125969
PaxDb:P08865 PRIDE:P08865 DNASU:3921 Ensembl:ENST00000301821
Ensembl:ENST00000443003 GeneID:3921 KEGG:hsa:3921 UCSC:uc003cjp.3
GeneCards:GC03P039448 HGNC:HGNC:6502 HPA:CAB009561 MIM:150370
neXtProt:NX_P08865 PharmGKB:PA30287 InParanoid:P08865
PhylomeDB:P08865 ChEMBL:CHEMBL6119 ChiTaRS:RPSA
EvolutionaryTrace:P08865 GenomeRNAi:3921 NextBio:15405
ArrayExpress:P08865 Bgee:P08865 Genevestigator:P08865
GermOnline:ENSG00000168028 Uniprot:P08865
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|Q4GWZ2 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
HAMAP:MF_03015 CTD:3921 HOVERGEN:HBG054466 OrthoDB:EOG40ZQZ6
HAMAP:MF_03016 EMBL:AM050292 RefSeq:NP_001032223.1
UniGene:Ssc.11095 ProteinModelPortal:Q4GWZ2 SMR:Q4GWZ2
STRING:Q4GWZ2 GeneID:641351 KEGG:ssc:641351 ArrayExpress:Q4GWZ2
Uniprot:Q4GWZ2
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|A6YRY8 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9940 "Ovis
aries" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005886 "plasma
membrane" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HAMAP:MF_03015
HOVERGEN:HBG054466 HAMAP:MF_03016 EMBL:EF649775 EMBL:EF222474
RefSeq:NP_001098733.1 UniGene:Oar.22928 ProteinModelPortal:A6YRY8
SMR:A6YRY8 GeneID:100125628 Uniprot:A6YRY8
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|P38982 [details] [associations]
symbol:Rpsa "40S ribosomal protein SA" species:10029
"Cricetulus griseus" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=ISS] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634
GO:GO:0005737 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HAMAP:MF_03015 CTD:3921 HOVERGEN:HBG054466
HAMAP:MF_03016 EMBL:L16589 EMBL:Z22749 PIR:S33438
RefSeq:NP_001230962.1 ProteinModelPortal:P38982 SMR:P38982
PRIDE:P38982 GeneID:100689045 Uniprot:P38982
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|Q2L9X0 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9534
"Chlorocebus aethiops" [GO:0005886 "plasma membrane" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HAMAP:MF_03015 HOVERGEN:HBG054466 HAMAP:MF_03016
EMBL:DQ343296 ProteinModelPortal:Q2L9X0 SMR:Q2L9X0 PRIDE:Q2L9X0
Uniprot:Q2L9X0
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>MGI|MGI:105381 [details] [associations]
symbol:Rpsa "ribosomal protein SA" species:10090 "Mus
musculus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome" evidence=IBA]
[GO:0005604 "basement membrane" evidence=ISO] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0005886
"plasma membrane" evidence=ISO] [GO:0006407 "rRNA export from
nucleus" evidence=IBA] [GO:0006412 "translation" evidence=IBA]
[GO:0015935 "small ribosomal subunit" evidence=IDA] [GO:0016020
"membrane" evidence=ISO] [GO:0016337 "cell-cell adhesion"
evidence=ISO] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO;IBA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0031012 "extracellular matrix" evidence=ISO] [GO:0043022
"ribosome binding" evidence=ISO] [GO:0043025 "neuronal cell body"
evidence=ISO] [GO:0043236 "laminin binding" evidence=IDA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
MGI:MGI:105381 GO:GO:0005886 GO:GO:0005634 GO:GO:0006412
GO:GO:0043236 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 EMBL:DQ360291 EMBL:DQ360292
GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM HAMAP:MF_03015
GeneTree:ENSGT00390000015036 CTD:3921 HOVERGEN:HBG054466
OrthoDB:EOG40ZQZ6 HAMAP:MF_03016 ChiTaRS:RPSA EMBL:J02870
EMBL:X06406 EMBL:AF140348 EMBL:AK010423 EMBL:AK010985 EMBL:AK011041
EMBL:AK011043 EMBL:AK075778 EMBL:AK075790 EMBL:AK082935
EMBL:AK088954 EMBL:AK134224 EMBL:AK135488 EMBL:AK160551
EMBL:AK160625 EMBL:AK165219 EMBL:AK166697 EMBL:AK166874
EMBL:AK167132 EMBL:BC003829 EMBL:BC037195 EMBL:BC055886
EMBL:BC081461 EMBL:BC084677 EMBL:BC092041 EMBL:BC094902
EMBL:BC099601 EMBL:BC110285 IPI:IPI00123604 PIR:A29395
RefSeq:NP_035159.3 RefSeq:XP_003086186.1 UniGene:Mm.311972
UniGene:Mm.391708 UniGene:Mm.4071 ProteinModelPortal:P14206
SMR:P14206 IntAct:P14206 STRING:P14206 PhosphoSite:P14206
REPRODUCTION-2DPAGE:IPI00123604 REPRODUCTION-2DPAGE:P14206
SWISS-2DPAGE:P14206 PaxDb:P14206 PRIDE:P14206
Ensembl:ENSMUST00000035105 GeneID:100505031 GeneID:16785
KEGG:mmu:100505031 KEGG:mmu:16785 UCSC:uc009scd.2 InParanoid:P14206
ChEMBL:CHEMBL1075301 NextBio:290650 Bgee:P14206 CleanEx:MM_RPSA
Genevestigator:P14206 GermOnline:ENSMUSG00000032518 Uniprot:P14206
Length = 295
Score = 164 (62.8 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|E2RJ06 [details] [associations]
symbol:RPSA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012 OMA:ENVNFQM
GeneTree:ENSGT00390000015036 EMBL:AAEX03013498 UniGene:Cfa.27618
Ensembl:ENSCAFT00000008199 NextBio:20852580 Uniprot:E2RJ06
Length = 314
Score = 164 (62.8 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 29/50 (58%), Positives = 40/50 (80%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QMEQY+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDG-IYII 49
>UNIPROTKB|C9JQR9 [details] [associations]
symbol:RPSAP58 "Protein RPSAP58" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 PANTHER:PTHR11489
OrthoDB:EOG40ZQZ6 EMBL:AC139769 HGNC:HGNC:36809 IPI:IPI00946437
ProteinModelPortal:C9JQR9 SMR:C9JQR9 STRING:C9JQR9 PaxDb:C9JQR9
Ensembl:ENST00000486528 ArrayExpress:C9JQR9 Bgee:C9JQR9
Uniprot:C9JQR9
Length = 73
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QME Y+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEHYIYKRKSDG-IYII 49
>UNIPROTKB|A6NE09 [details] [associations]
symbol:RPSAP58 "Protein RPSAP58" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 OMA:ENVNFQM
HOVERGEN:HBG054466 EMBL:AC139769 IPI:IPI00793137 SMR:A6NE09
STRING:A6NE09 Ensembl:ENST00000354585 Ensembl:ENST00000496398
UCSC:uc002nrn.3 HGNC:HGNC:36809 Uniprot:A6NE09
Length = 295
Score = 159 (61.0 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MSG LD+L +KE+DV K L A TH+G N D+QME Y+YKR++DG I+++
Sbjct: 1 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEHYIYKRKSDG-IYII 49
>UNIPROTKB|I3LC48 [details] [associations]
symbol:RPSA "40S ribosomal protein SA" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 GeneTree:ENSGT00390000015036 EMBL:CU928418
EMBL:FP312619 Ensembl:ENSSSCT00000004148 Uniprot:I3LC48
Length = 293
Score = 151 (58.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
MS LD+L +KE+DV K L A TH+G N D+Q EQY+YKR++DG I+V+
Sbjct: 1 MSRALDVLQMKEEDVLKFLAAGTHLGGTNLDFQREQYIYKRKSDG-IYVI 49
>ZFIN|ZDB-GENE-050417-382 [details] [associations]
symbol:zgc:110181 "zgc:110181" species:7955 "Danio
rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 ZFIN:ZDB-GENE-050417-382
GO:GO:0006412 GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591
SUPFAM:SSF52313 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOVERGEN:HBG054466 EMBL:BC092777 IPI:IPI00570173
RefSeq:NP_001017838.1 UniGene:Dr.87993 ProteinModelPortal:Q568P4
SMR:Q568P4 GeneID:550536 KEGG:dre:550536 NextBio:20879777
Uniprot:Q568P4
Length = 295
Score = 138 (53.6 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 30/45 (66%), Positives = 34/45 (75%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
MSG L +L E D+ KML A+THIGSENSD+QM QYVYKR DG
Sbjct: 1 MSGAL---ALTEPDILKMLAAKTHIGSENSDFQMLQYVYKRCIDG 42
>WB|WBGene00004469 [details] [associations]
symbol:rps-0 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0015935
"small ribosomal subunit" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0006412 GO:GO:0018996
GO:GO:0040035 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015
GeneTree:ENSGT00390000015036 EMBL:Z37983 PIR:T18742
RefSeq:NP_497978.1 ProteinModelPortal:P46769 SMR:P46769
DIP:DIP-26217N IntAct:P46769 MINT:MINT-1037948 STRING:P46769
World-2DPAGE:0020:P46769 PaxDb:P46769 EnsemblMetazoa:B0393.1.1
EnsemblMetazoa:B0393.1.2 GeneID:175628 KEGG:cel:CELE_B0393.1
UCSC:B0393.1.1 CTD:175628 WormBase:B0393.1 InParanoid:P46769
OMA:QAGADWT NextBio:888964 Uniprot:P46769
Length = 276
Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
MSGG +L E+DV K+L Q H+GS N ++QM+QYVYKRR DG
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDG 45
>UNIPROTKB|P46769 [details] [associations]
symbol:rps-0 "40S ribosomal protein SA" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0030686 "90S preribosome" evidence=IBA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA]
[GO:0006412 "translation" evidence=IBA] [GO:0006407 "rRNA export
from nucleus" evidence=IBA] [GO:0003735 "structural constituent of
ribosome" evidence=IBA] [GO:0000461 "endonucleolytic cleavage to
generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IBA] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IBA] [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0006412 GO:GO:0018996
GO:GO:0040035 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015
GeneTree:ENSGT00390000015036 EMBL:Z37983 PIR:T18742
RefSeq:NP_497978.1 ProteinModelPortal:P46769 SMR:P46769
DIP:DIP-26217N IntAct:P46769 MINT:MINT-1037948 STRING:P46769
World-2DPAGE:0020:P46769 PaxDb:P46769 EnsemblMetazoa:B0393.1.1
EnsemblMetazoa:B0393.1.2 GeneID:175628 KEGG:cel:CELE_B0393.1
UCSC:B0393.1.1 CTD:175628 WormBase:B0393.1 InParanoid:P46769
OMA:QAGADWT NextBio:888964 Uniprot:P46769
Length = 276
Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
MSGG +L E+DV K+L Q H+GS N ++QM+QYVYKRR DG
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDG 45
>UNIPROTKB|J9P9K4 [details] [associations]
symbol:J9P9K4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015935 "small ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PROSITE:PS00962 GO:GO:0006412 GO:GO:0003735
GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 EMBL:AAEX03008008
Ensembl:ENSCAFT00000043626 Uniprot:J9P9K4
Length = 268
Score = 134 (52.2 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 7 ILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFV 49
+L +KE+DV K+L A+TH+G N D+ MEQY+YKR+++G +
Sbjct: 4 VLQMKEEDVLKLLAAETHVGGMNLDFHMEQYIYKRKSEGTCII 46
>UNIPROTKB|Q8H3I3 [details] [associations]
symbol:B1056G08.113 "Os07g0616600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00963
GO:GO:0005886 GO:GO:0005634 GO:GO:0009507 GO:GO:0006412
GO:GO:0009651 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
EMBL:AP008213 EMBL:CM000144 GO:GO:0000447 GO:GO:0042256
GO:GO:0022627 EMBL:AP004988 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 KO:K02998 HSSP:O29132 OMA:QAGADWT PDB:3IZ6
PDBsum:3IZ6 EMBL:AK058308 EMBL:AK102735 EMBL:AK103952 EMBL:AK105968
RefSeq:NP_001060277.1 UniGene:Os.8273 STRING:Q8H3I3
EnsemblPlants:LOC_Os07g42450.1 GeneID:4343909 KEGG:osa:4343909
ProtClustDB:CLSN2919813 Uniprot:Q8H3I3
Length = 305
Score = 129 (50.5 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
LS +E D+ ML A H+G++N D+QME+YVYKRR DG I+++
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDG-IYII 53
>UNIPROTKB|A8IB25 [details] [associations]
symbol:CHLREDRAFT_126059 "40S ribosomal protein SA"
species:3055 "Chlamydomonas reinhardtii" [GO:0000028 "ribosomal
small subunit assembly" evidence=ISS] [GO:0000447 "endonucleolytic
cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0005886 GO:GO:0005634 GO:GO:0009507
GO:GO:0006412 GO:GO:0009651 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0042256 GO:GO:0022627
GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 EMBL:DS496115 RefSeq:XP_001702485.1 UniGene:Cre.2557
ProteinModelPortal:A8IB25 SMR:A8IB25 STRING:A8IB25 PRIDE:A8IB25
EnsemblPlants:EDP06264 GeneID:5728044 KEGG:cre:CHLREDRAFT_126059
eggNOG:NOG251336 ProtClustDB:CLSN2923915 Uniprot:A8IB25
Length = 279
Score = 127 (49.8 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
LS KE D+ ML AQ H+G++N YQME+Y+Y+RR DG I+++
Sbjct: 3 LSQKEQDIQMMLAAQCHLGTKNCHYQMERYMYRRRQDG-IYII 44
>TAIR|locus:2193997 [details] [associations]
symbol:P40 "AT1G72370" species:3702 "Arabidopsis
thaliana" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM;IDA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006407 "rRNA export from nucleus" evidence=IBA]
[GO:0006412 "translation" evidence=IEA;ISS;IBA] [GO:0015935 "small
ribosomal subunit" evidence=IEA;IDA] [GO:0030686 "90S preribosome"
evidence=IBA] [GO:0042256 "mature ribosome assembly" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0006970 "response to osmotic stress" evidence=IEP] [GO:0009651
"response to salt stress" evidence=IEP;RCA] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0006096
"glycolysis" evidence=RCA] [GO:0006833 "water transport"
evidence=RCA] [GO:0006972 "hyperosmotic response" evidence=RCA]
[GO:0007030 "Golgi organization" evidence=RCA] [GO:0009266
"response to temperature stimulus" evidence=RCA] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] [GO:0046686 "response to cadmium
ion" evidence=RCA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 EnsemblPlants:AT1G72370.1 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0006412 GO:GO:0009651 GO:GO:0003735
GO:GO:0000028 EMBL:AC016529 GO:GO:0030686 GO:GO:0000447
GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591 SUPFAM:SSF52313
eggNOG:COG0052 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
EMBL:X69056 EMBL:U01955 EMBL:X89366 EMBL:Y10379 EMBL:AY054211
EMBL:AY058885 EMBL:AY065096 EMBL:AY079041 EMBL:AY114561
EMBL:AY136324 EMBL:BT000421 EMBL:AY087976 IPI:IPI00532111
PIR:F96747 PIR:S71247 RefSeq:NP_177381.1 UniGene:At.22576
UniGene:At.35111 UniGene:At.70162 ProteinModelPortal:Q08682
SMR:Q08682 IntAct:Q08682 STRING:Q08682 PaxDb:Q08682 PRIDE:Q08682
ProMEX:Q08682 GeneID:843569 KEGG:ath:AT1G72370 GeneFarm:5044
TAIR:At1g72370 HOGENOM:HOG000232073 InParanoid:Q08682 KO:K02998
OMA:ENVNFQM PhylomeDB:Q08682 ProtClustDB:CLSN2912707
Genevestigator:Q08682 HAMAP:MF_03015 Uniprot:Q08682
Length = 298
Score = 127 (49.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFV 49
LS KE DV M A+ H+G++N +YQME+YV+KRRNDG I++
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDG-IYI 52
>UNIPROTKB|D4A495 [details] [associations]
symbol:D4A495 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0015935 "small ribosomal subunit" evidence=IEA]
InterPro:IPR005707 GO:GO:0006412 GO:GO:0003735 GO:GO:0015935
InterPro:IPR023591 SUPFAM:SSF52313 PANTHER:PTHR11489
GeneTree:ENSGT00390000015036 IPI:IPI00779109
Ensembl:ENSRNOT00000057337 Uniprot:D4A495
Length = 244
Score = 98 (39.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 10 LKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRND 44
++E DV K L A+T G N D+Q+E Y+YKR++D
Sbjct: 1 MREGDVLKFLAAETQFGGTNLDFQIEWYLYKRKSD 35
Score = 44 (20.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 49 VLVICYRVSLILCNNIWQHMAELLDGSKQVWWFHGQVLEVLTMFHNSWSAL 99
VL +CY I CNN H S +WW +VL M+ W +
Sbjct: 118 VLPLCYVDIAIPCNNKGAH-------SGLMWWM--LAWDVLRMY--PWEVM 157
>TAIR|locus:2084988 [details] [associations]
symbol:RPSAb "AT3G04770" species:3702 "Arabidopsis
thaliana" [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0000461 "endonucleolytic cleavage to generate mature 3'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IBA]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;ISS;IBA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0006407 "rRNA export from nucleus" evidence=IBA] [GO:0006412
"translation" evidence=IEA;ISS;IBA] [GO:0030686 "90S preribosome"
evidence=IBA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS;IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00963
EnsemblPlants:AT3G04770.1 GO:GO:0009507 EMBL:CP002686 GO:GO:0016020
GO:GO:0006412 GO:GO:0003735 GO:GO:0000028 GO:GO:0030686
GO:GO:0000447 GO:GO:0022627 GO:GO:0006407 InterPro:IPR023591
SUPFAM:SSF52313 GO:GO:0000461 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
KO:K02998 IPI:IPI00522617 RefSeq:NP_850515.1 UniGene:At.10372
ProteinModelPortal:F4J4W3 SMR:F4J4W3 PRIDE:F4J4W3 DNASU:819637
GeneID:819637 KEGG:ath:AT3G04770 OMA:RWICFST Uniprot:F4J4W3
Length = 332
Score = 122 (48.0 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFVL 50
+S KE D+ ML A H+G++N +YQME+YV+KRR+DG I+++
Sbjct: 13 VSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDG-IYII 54
>UNIPROTKB|F1S1E3 [details] [associations]
symbol:F1S1E3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015935 "small ribosomal subunit" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR001865
InterPro:IPR005707 Pfam:PF00318 PRINTS:PR00395 GO:GO:0006412
GO:GO:0003735 GO:GO:0015935 InterPro:IPR023591 SUPFAM:SSF52313
PANTHER:PTHR11489 GeneTree:ENSGT00390000015036 EMBL:CU695067
Ensembl:ENSSSCT00000022457 Uniprot:F1S1E3
Length = 283
Score = 114 (45.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 1 MSGGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
MSG L +L +K++DV K A TH+ N D QMEQY+Y+ +DG
Sbjct: 1 MSGALAVLKMKKEDVFKFPAAGTHLVGPNLDCQMEQYIYRWESDG 45
>POMBASE|SPAPJ698.02c [details] [associations]
symbol:rps002 "40S ribosomal protein S0B" species:4896
"Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic translation"
evidence=NAS] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006412 "translation" evidence=IC] [GO:0022627
"cytosolic small ribosomal subunit" evidence=TAS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IMP]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
PomBase:SPAPJ698.02c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003735 GO:GO:0002181 GO:GO:0006364 GO:GO:0042274
GO:GO:0022627 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
OMA:ENVNFQM HAMAP:MF_03015 OrthoDB:EOG4KH646 RefSeq:NP_594413.1
ProteinModelPortal:Q9P546 SMR:Q9P546 STRING:Q9P546 PRIDE:Q9P546
EnsemblFungi:SPAPJ698.02c.1 GeneID:2543293 KEGG:spo:SPAPJ698.02c
NextBio:20804311 Uniprot:Q9P546
Length = 287
Score = 113 (44.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 7 ILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
+L+ +DD+ +L A +HIGS+N + +ME YV+KRR+DG
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDG 48
>DICTYBASE|DDB_G0270316 [details] [associations]
symbol:rpsA "40S ribosomal protein SA" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0009617 "response to bacterium" evidence=IEP]
[GO:0015935 "small ribosomal subunit" evidence=IEA] [GO:0006412
"translation" evidence=IEA;IBA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA;IBA] [GO:0030686
"90S preribosome" evidence=IBA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IBA] [GO:0006407 "rRNA export from
nucleus" evidence=IBA] [GO:0000461 "endonucleolytic cleavage to
generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IBA] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IBA] [GO:0000028 "ribosomal small subunit assembly"
evidence=IBA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 dictyBase:DDB_G0270316
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0045335
GO:GO:0009617 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 HAMAP:MF_03015
OMA:FKEPRVI HSSP:O29132 RefSeq:XP_646700.1
ProteinModelPortal:Q55BY1 SMR:Q55BY1 STRING:Q55BY1
EnsemblProtists:DDB0230016 GeneID:8617674 KEGG:ddi:DDB_G0270316
ProtClustDB:PTZ00254 Uniprot:Q55BY1
Length = 245
Score = 110 (43.8 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 8 LSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDGEIFV 49
L+ +DD+ KML QTH+G N D +ME Y +KR+++G +
Sbjct: 8 LNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHFII 49
>POMBASE|SPBC685.06 [details] [associations]
symbol:rps001 "40S ribosomal protein S0A (p40)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006412 "translation" evidence=IC] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=TAS] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IMP] InterPro:IPR001865
InterPro:IPR005707 InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395
PROSITE:PS00962 PROSITE:PS00963 PomBase:SPBC685.06 GO:GO:0005634
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003735 GO:GO:0002181
GO:GO:0006364 GO:GO:0042274 GO:GO:0022627 InterPro:IPR023591
SUPFAM:SSF52313 eggNOG:COG0052 PANTHER:PTHR11489 TIGRFAMs:TIGR01012
HOGENOM:HOG000232073 KO:K02998 HAMAP:MF_03015 PIR:T40637
RefSeq:NP_596140.1 ProteinModelPortal:Q9Y7L8 SMR:Q9Y7L8
STRING:Q9Y7L8 PRIDE:Q9Y7L8 EnsemblFungi:SPBC685.06.1 GeneID:2541144
KEGG:spo:SPBC685.06 OMA:ANCHIGS OrthoDB:EOG4KH646 NextBio:20802257
Uniprot:Q9Y7L8
Length = 292
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 3 GGLDILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
G +IL+ ++D+ ++L A HIGS+N + +M+ YV+KRR+DG
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDG 47
>UNIPROTKB|Q7RBT0 [details] [associations]
symbol:PY06059 "40S ribosomal protein SA" species:73239
"Plasmodium yoelii yoelii" [GO:0000028 "ribosomal small subunit
assembly" evidence=ISS] [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0000461 "endonucleolytic cleavage to generate
mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0006407 "rRNA export from nucleus" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISS] [GO:0030686 "90S
preribosome" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 GO:GO:0000028
GO:GO:0030686 GO:GO:0000447 GO:GO:0022627 GO:GO:0006407
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 GO:GO:0000461
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 KO:K02998 HAMAP:MF_03015
HSSP:O29132 EMBL:AABL01002012 RefSeq:XP_726642.1
ProteinModelPortal:Q7RBT0 SMR:Q7RBT0 STRING:Q7RBT0 GeneID:3791982
KEGG:pyo:PY06059 EuPathDB:PlasmoDB:PY06059 Uniprot:Q7RBT0
Length = 263
Score = 93 (37.8 bits), Expect = 0.00042, P = 0.00042
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 7 ILSLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
+ S KE+ + KML + HIG++N + +M++YVY R DG
Sbjct: 6 VQSPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDG 44
>GENEDB_PFALCIPARUM|PF10_0264 [details] [associations]
symbol:PF10_0264 "40S ribosomal protein,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS]
InterPro:IPR001865 InterPro:IPR005707 InterPro:IPR018130
Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962 PROSITE:PS00963
GO:GO:0006412 GO:GO:0003735 EMBL:AE014185 GO:GO:0022627
InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052 PANTHER:PTHR11489
TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998 OMA:ENVNFQM
HAMAP:MF_03015 HSSP:O29132 ProtClustDB:PTZ00254
RefSeq:XP_001347548.1 ProteinModelPortal:Q8IJD4 SMR:Q8IJD4
IntAct:Q8IJD4 MINT:MINT-1717658 PRIDE:Q8IJD4
EnsemblProtists:PF10_0264:mRNA GeneID:810421 KEGG:pfa:PF10_0264
EuPathDB:PlasmoDB:PF3D7_1026800 Uniprot:Q8IJD4
Length = 263
Score = 92 (37.4 bits), Expect = 0.00054, P = 0.00054
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 9 SLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
S KE+ + KML + HIG++N + +M++YVY R DG
Sbjct: 8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDG 44
>UNIPROTKB|Q8IJD4 [details] [associations]
symbol:PF10_0264 "40S ribosomal protein SA" species:36329
"Plasmodium falciparum 3D7" [GO:0022627 "cytosolic small ribosomal
subunit" evidence=ISS] InterPro:IPR001865 InterPro:IPR005707
InterPro:IPR018130 Pfam:PF00318 PRINTS:PR00395 PROSITE:PS00962
PROSITE:PS00963 GO:GO:0006412 GO:GO:0003735 EMBL:AE014185
GO:GO:0022627 InterPro:IPR023591 SUPFAM:SSF52313 eggNOG:COG0052
PANTHER:PTHR11489 TIGRFAMs:TIGR01012 HOGENOM:HOG000232073 KO:K02998
OMA:ENVNFQM HAMAP:MF_03015 HSSP:O29132 ProtClustDB:PTZ00254
RefSeq:XP_001347548.1 ProteinModelPortal:Q8IJD4 SMR:Q8IJD4
IntAct:Q8IJD4 MINT:MINT-1717658 PRIDE:Q8IJD4
EnsemblProtists:PF10_0264:mRNA GeneID:810421 KEGG:pfa:PF10_0264
EuPathDB:PlasmoDB:PF3D7_1026800 Uniprot:Q8IJD4
Length = 263
Score = 92 (37.4 bits), Expect = 0.00054, P = 0.00054
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 9 SLKEDDVTKMLGAQTHIGSENSDYQMEQYVYKRRNDG 45
S KE+ + KML + HIG++N + +M++YVY R DG
Sbjct: 8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDG 44
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.135 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 112 112 0.00091 102 3 11 22 0.43 30
29 0.43 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 589 (63 KB)
Total size of DFA: 146 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.33u 0.08s 11.41t Elapsed: 00:00:16
Total cpu time: 11.33u 0.08s 11.41t Elapsed: 00:00:16
Start: Thu Aug 15 11:30:51 2013 End: Thu Aug 15 11:31:07 2013