BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16269
(186 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2SL57|RIMM_HAHCH Ribosome maturation factor RimM OS=Hahella chejuensis (strain KCTC
2396) GN=rimM PE=3 SV=1
Length = 173
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 27 PNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNK-LLVSTLTTKTQIRCE 85
P L + L++EDG+ KLR Q + I + VD++ L S + + +I
Sbjct: 29 PENMLRYANWELVREDGNRSSAKLRSGKPQGKGIVIALAGVDDRNLAKSYVGCQIEIESS 88
Query: 86 PIPARRDRSQNRRQQ------TIDG-NIGSSSNTVTSSSNDALTA 123
+PA + RQ T +G NIG S+ + + +ND L
Sbjct: 89 ELPALEEGEYYWRQLEGLTVFTSEGVNIGRVSHLIETGANDVLVV 133
>sp|Q9BQS6|HSPB9_HUMAN Heat shock protein beta-9 OS=Homo sapiens GN=HSPB9 PE=1 SV=1
Length = 159
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 36 SPLIQEDGDNKL--LKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIR 83
SP QED D+ +++ D + PEE+VV+ VD + L+ T + +R
Sbjct: 40 SPAAQEDNDHARDGFQMKLDAHGFAPEELVVQ-VDGQWLMVTGQQQLDVR 88
>sp|Q00649|HSPB1_CHICK Heat shock protein beta-1 OS=Gallus gallus GN=HSPB1 PE=2 SV=1
Length = 193
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 15 SNDALTAAPRPGPNTYLDNISSPL--IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDN 69
S AL AP L +SS + I++ D+ K+ DV+ + PEE+VVKT DN
Sbjct: 60 SESALLPAPGSPYGRALSELSSGISEIRQSADS--WKVTLDVNHFAPEELVVKTKDN 114
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 117 SNDALTAAPRPGPNTYLDNISSPL--IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDN 171
S AL AP L +SS + I++ D+ K+ DV+ + PEE+VVKT DN
Sbjct: 60 SESALLPAPGSPYGRALSELSSGISEIRQSADS--WKVTLDVNHFAPEELVVKTKDN 114
>sp|Q653H7|ARFR_ORYSJ Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18
PE=2 SV=1
Length = 700
Score = 31.6 bits (70), Expect = 2.9, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 16/96 (16%)
Query: 94 SQNRRQQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNTYLDNISS---PLIQEDGDNKLL 150
S + ++ + DGN + NTV S++D ++PR N DN+S PL Q DNK+L
Sbjct: 557 SVDVKKSSSDGN---AENTVNKSNSD--VSSPRSNQNGTTDNLSCGGVPLCQ---DNKVL 608
Query: 151 KLRFDVSQ---YQPEEIVVKTVDNKLLVLSTYTNSY 183
+ + + E V +T+D L V+ +Y Y
Sbjct: 609 DVGLETGHCKVFMQSEDVGRTLD--LSVVGSYEELY 642
>sp|O13224|HSPB1_POELU Heat shock protein beta-1 OS=Poeciliopsis lucida GN=hspb1 PE=2 SV=1
Length = 201
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVS 74
I++ DN K+ DV + PEE+VVKT D L +S
Sbjct: 95 IKQTQDN--WKISLDVPHFSPEELVVKTKDGVLEIS 128
>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7
PE=1 SV=1
Length = 2159
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 89 ARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNTYLDNISSPLIQEDGDNK 148
A+ D RR++ DGN +S T ++D AP PG + P+ +
Sbjct: 1046 AKGDSEDPRREKKSDGNGRTSDTAFTRGTSDKSNQAPAPG--------AVPITPSTA--R 1095
Query: 149 LLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182
+L+L V Q+ P +V+ + ++LL++ Y +
Sbjct: 1096 ILEL---VQQHVPGAQLVEDLPHELLLVLPYAGA 1126
>sp|P02517|HSP26_DROME Heat shock protein 26 OS=Drosophila melanogaster GN=Hsp26 PE=1 SV=2
Length = 208
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 48 LKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIG 107
++ DV+Q++P E+ VK VD+ +LV + Q I R RR + DG
Sbjct: 89 FQVCMDVAQFKPSELNVKVVDDSILVEGKHEERQDDHGHI----MRHFVRRYKVPDGY-- 142
Query: 108 SSSNTVTSSSNDALTAAPRPGPNTYLDNISSPLIQ 142
+ V+ S+D + P P D +IQ
Sbjct: 143 KAEQVVSQLSSDGVLTVSIPKPQAVEDKSKERIIQ 177
>sp|Q16082|HSPB2_HUMAN Heat shock protein beta-2 OS=Homo sapiens GN=HSPB2 PE=1 SV=2
Length = 182
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 53 DVSQYQPEEIVVKTVDNKLLVST 75
DVS + P+E+ V+TVDN L VS
Sbjct: 79 DVSHFTPDEVTVRTVDNLLEVSA 101
>sp|O35878|HSPB2_RAT Heat shock protein beta-2 OS=Rattus norvegicus GN=Hspb2 PE=3 SV=1
Length = 182
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 53 DVSQYQPEEIVVKTVDNKLLVST 75
DVS + P+E+ V+TVDN L VS
Sbjct: 79 DVSHFTPDEVTVRTVDNLLEVSA 101
>sp|Q98R33|SYC_MYCPU Cysteine--tRNA ligase OS=Mycoplasma pulmonis (strain UAB CTIP)
GN=cysS PE=3 SV=1
Length = 596
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 24 RPGPNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVV 64
RP N Y N++SP I ED K + D+ Y +EI +
Sbjct: 80 RPEGNYYYINLTSPFIFEDNTIKYIDFDIDIKVYPKKEIEI 120
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 126 RPGPNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVV 166
RP N Y N++SP I ED K + D+ Y +EI +
Sbjct: 80 RPEGNYYYINLTSPFIFEDNTIKYIDFDIDIKVYPKKEIEI 120
>sp|Q99PR8|HSPB2_MOUSE Heat shock protein beta-2 OS=Mus musculus GN=Hspb2 PE=2 SV=2
Length = 182
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 53 DVSQYQPEEIVVKTVDNKLLVST 75
DVS + P+E+ V+TVDN L VS
Sbjct: 79 DVSHFTPDEVTVRTVDNLLEVSA 101
>sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=INO80 PE=3 SV=1
Length = 1904
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 103 DGNIGSSSNTVTSSSNDALTAAPRPG-PNTYL 133
+G+ S NT TSS+N +L + PRP PN Y+
Sbjct: 94 NGHNHSHHNTSTSSANHSLQSPPRPALPNPYM 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,977,023
Number of Sequences: 539616
Number of extensions: 2657419
Number of successful extensions: 6983
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 6887
Number of HSP's gapped (non-prelim): 166
length of query: 186
length of database: 191,569,459
effective HSP length: 111
effective length of query: 75
effective length of database: 131,672,083
effective search space: 9875406225
effective search space used: 9875406225
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)