Query psy16269
Match_columns 186
No_of_seqs 224 out of 805
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:06:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3591|consensus 99.9 3.6E-27 7.9E-32 194.0 10.5 84 36-124 62-145 (173)
2 cd06480 ACD_HspB8_like Alpha-c 99.9 1.4E-23 3.1E-28 156.7 9.3 76 42-122 11-86 (91)
3 cd06476 ACD_HspB2_like Alpha c 99.8 7E-20 1.5E-24 134.1 9.1 78 41-123 2-79 (83)
4 cd06498 ACD_alphaB-crystallin_ 99.8 5.3E-19 1.2E-23 129.5 8.7 77 41-122 2-78 (84)
5 cd06497 ACD_alphaA-crystallin_ 99.8 6.4E-19 1.4E-23 129.5 9.1 79 40-123 4-82 (86)
6 cd06478 ACD_HspB4-5-6 Alpha-cr 99.8 9.8E-19 2.1E-23 127.5 8.9 77 42-123 3-79 (83)
7 cd06477 ACD_HspB3_Like Alpha c 99.8 5.4E-18 1.2E-22 124.5 9.2 76 42-122 3-78 (83)
8 cd06481 ACD_HspB9_like Alpha c 99.7 2.5E-17 5.4E-22 121.3 9.0 81 41-122 2-82 (87)
9 cd06475 ACD_HspB1_like Alpha c 99.7 7.1E-17 1.5E-21 118.6 8.6 78 40-122 4-81 (86)
10 cd06479 ACD_HspB7_like Alpha c 99.7 1.1E-16 2.4E-21 117.0 8.6 74 42-123 4-77 (81)
11 cd06526 metazoan_ACD Alpha-cry 99.7 5.7E-16 1.2E-20 111.9 8.8 75 44-123 5-79 (83)
12 cd06482 ACD_HspB10 Alpha cryst 99.6 1.2E-14 2.6E-19 107.7 9.0 77 44-122 6-82 (87)
13 PF00011 HSP20: Hsp20/alpha cr 99.4 4.2E-13 9.1E-18 99.0 7.3 76 42-122 3-82 (102)
14 cd06464 ACD_sHsps-like Alpha-c 99.3 2.9E-12 6.4E-17 90.5 6.9 78 44-122 5-83 (88)
15 KOG3591|consensus 99.3 1.2E-12 2.6E-17 107.9 5.5 46 138-183 62-107 (173)
16 COG0071 IbpA Molecular chapero 99.2 4.7E-11 1E-15 94.7 8.9 89 34-123 38-128 (146)
17 cd06470 ACD_IbpA-B_like Alpha- 99.2 1.2E-10 2.6E-15 85.6 7.8 77 43-122 8-85 (90)
18 cd06472 ACD_ScHsp26_like Alpha 99.2 9.2E-11 2E-15 86.1 6.8 81 41-122 4-87 (92)
19 cd06471 ACD_LpsHSP_like Group 99.2 2.4E-10 5.3E-15 83.6 9.0 82 39-123 3-89 (93)
20 PRK10743 heat shock protein Ib 99.1 1.9E-10 4E-15 91.6 8.3 84 37-123 35-119 (137)
21 cd06480 ACD_HspB8_like Alpha-c 99.1 1.6E-10 3.4E-15 86.5 4.6 40 144-183 11-50 (91)
22 PRK11597 heat shock chaperone 99.0 1.4E-09 3.1E-14 87.2 7.9 78 37-122 33-116 (142)
23 cd00298 ACD_sHsps_p23-like Thi 98.9 1.5E-08 3.2E-13 68.3 7.8 71 44-121 4-74 (80)
24 cd06476 ACD_HspB2_like Alpha c 98.5 1.7E-07 3.6E-12 68.6 4.7 41 143-183 2-42 (83)
25 cd06497 ACD_alphaA-crystallin_ 98.4 7.4E-07 1.6E-11 65.4 5.1 42 141-182 3-44 (86)
26 cd06498 ACD_alphaB-crystallin_ 98.3 8.4E-07 1.8E-11 64.9 4.7 40 143-182 2-41 (84)
27 cd06478 ACD_HspB4-5-6 Alpha-cr 98.3 1.4E-06 3E-11 63.4 4.9 40 143-182 2-41 (83)
28 cd06481 ACD_HspB9_like Alpha c 98.1 4.3E-06 9.4E-11 61.4 4.7 37 145-181 4-40 (87)
29 cd06479 ACD_HspB7_like Alpha c 98.1 5.2E-06 1.1E-10 60.7 4.8 39 143-181 3-41 (81)
30 cd06477 ACD_HspB3_Like Alpha c 98.1 6E-06 1.3E-10 60.6 4.7 38 145-182 4-41 (83)
31 cd06475 ACD_HspB1_like Alpha c 98.0 9.5E-06 2.1E-10 59.5 5.2 41 142-182 4-44 (86)
32 cd06526 metazoan_ACD Alpha-cry 97.8 2.9E-05 6.4E-10 55.8 4.2 37 146-182 5-41 (83)
33 cd06482 ACD_HspB10 Alpha cryst 97.6 9.5E-05 2.1E-09 54.8 4.6 37 145-181 5-41 (87)
34 cd06464 ACD_sHsps-like Alpha-c 97.4 0.00029 6.2E-09 49.3 4.5 38 145-182 4-41 (88)
35 PF00011 HSP20: Hsp20/alpha cr 97.3 0.00048 1E-08 50.5 5.3 38 143-180 2-39 (102)
36 cd06470 ACD_IbpA-B_like Alpha- 97.3 0.00053 1.1E-08 50.2 5.2 42 141-182 3-45 (90)
37 KOG0710|consensus 97.1 0.0011 2.4E-08 55.5 5.7 79 42-121 90-173 (196)
38 cd06469 p23_DYX1C1_like p23_li 97.1 0.0031 6.6E-08 44.0 7.0 59 44-121 4-62 (78)
39 COG0071 IbpA Molecular chapero 96.9 0.0024 5.1E-08 50.6 5.5 44 138-181 40-83 (146)
40 cd06471 ACD_LpsHSP_like Group 96.8 0.0032 7E-08 45.7 5.2 41 141-181 3-43 (93)
41 PRK10743 heat shock protein Ib 96.7 0.0038 8.2E-08 49.7 5.6 43 139-181 35-78 (137)
42 cd06472 ACD_ScHsp26_like Alpha 96.3 0.0091 2E-07 43.5 5.1 38 142-179 3-41 (92)
43 cd06463 p23_like Proteins cont 96.2 0.03 6.6E-07 38.3 7.1 64 44-121 4-67 (84)
44 cd00298 ACD_sHsps_p23-like Thi 96.0 0.015 3.1E-07 38.6 4.5 36 146-181 4-39 (80)
45 PRK11597 heat shock chaperone 95.9 0.018 4E-07 46.3 5.3 41 139-179 33-74 (142)
46 cd06466 p23_CS_SGT1_like p23_l 94.7 0.14 3E-06 35.9 6.2 62 44-118 5-66 (84)
47 PF04969 CS: CS domain; Inter 94.4 0.59 1.3E-05 31.6 8.6 62 44-118 8-71 (79)
48 CHL00140 rpl6 ribosomal protei 89.7 0.32 6.9E-06 40.3 3.0 108 59-180 12-138 (178)
49 PRK05518 rpl6p 50S ribosomal p 89.2 0.86 1.9E-05 38.0 5.2 106 58-178 12-141 (180)
50 PF05455 GvpH: GvpH; InterPro 89.1 2 4.3E-05 36.1 7.2 72 36-124 91-164 (177)
51 PTZ00027 60S ribosomal protein 88.8 0.55 1.2E-05 39.5 3.9 108 57-178 11-148 (190)
52 PTZ00179 60S ribosomal protein 87.4 0.66 1.4E-05 39.0 3.5 105 59-178 12-147 (189)
53 TIGR03653 arch_L6P archaeal ri 87.3 0.71 1.5E-05 38.1 3.6 24 155-178 112-135 (170)
54 TIGR03654 L6_bact ribosomal pr 87.2 1.2 2.5E-05 36.8 4.7 20 59-78 11-30 (175)
55 cd06489 p23_CS_hSgt1_like p23_ 86.4 3.9 8.5E-05 28.9 6.6 62 44-118 5-66 (84)
56 PRK05498 rplF 50S ribosomal pr 82.9 2.1 4.5E-05 35.4 4.4 20 59-78 12-31 (178)
57 cd06463 p23_like Proteins cont 76.7 8.5 0.00018 25.9 5.2 32 148-179 41-73 (84)
58 cd06465 p23_hB-ind1_like p23_l 74.3 32 0.0007 25.4 9.0 61 44-118 8-68 (108)
59 TIGR02856 spore_yqfC sporulati 73.6 2.2 4.8E-05 31.5 1.7 41 37-78 20-62 (85)
60 TIGR02856 spore_yqfC sporulati 73.5 2.6 5.7E-05 31.0 2.1 26 154-179 36-61 (85)
61 PF07873 YabP: YabP family; I 72.0 3.4 7.4E-05 28.7 2.2 27 52-78 18-44 (66)
62 COG0097 RplF Ribosomal protein 70.4 6.6 0.00014 33.0 4.0 30 59-100 12-41 (178)
63 PF07873 YabP: YabP family; I 70.2 3.6 7.9E-05 28.6 2.1 25 155-179 19-43 (66)
64 TIGR02892 spore_yabP sporulati 69.1 3.4 7.4E-05 30.6 1.8 28 51-78 16-43 (85)
65 TIGR02892 spore_yabP sporulati 67.5 4.6 0.0001 29.9 2.2 27 153-179 16-42 (85)
66 cd06469 p23_DYX1C1_like p23_li 64.5 14 0.00031 25.2 4.2 35 148-182 36-71 (78)
67 PF08190 PIH1: pre-RNA process 59.0 95 0.0021 26.9 9.3 59 44-118 259-318 (328)
68 cd06468 p23_CacyBP p23_like do 55.0 72 0.0016 22.5 8.0 64 44-120 9-76 (92)
69 cd06467 p23_NUDC_like p23_like 51.3 45 0.00098 23.0 5.0 58 44-117 6-64 (85)
70 cd06466 p23_CS_SGT1_like p23_l 50.9 33 0.00073 23.5 4.2 36 147-182 41-77 (84)
71 cd07698 IgC_MHC_I_alpha3 Class 49.3 66 0.0014 22.8 5.7 69 45-119 14-83 (93)
72 cd06467 p23_NUDC_like p23_like 47.1 63 0.0014 22.3 5.2 30 149-178 9-39 (85)
73 PF04969 CS: CS domain; Inter 44.8 60 0.0013 21.5 4.7 34 146-179 8-43 (79)
74 PF00347 Ribosomal_L6: Ribosom 43.7 31 0.00067 23.6 3.1 20 59-78 2-21 (77)
75 cd06488 p23_melusin_like p23_l 42.1 1.2E+02 0.0027 21.5 6.8 61 44-117 8-68 (87)
76 cd06493 p23_NUDCD1_like p23_NU 41.9 74 0.0016 22.5 4.9 21 159-179 53-74 (85)
77 PF00207 A2M: Alpha-2-macroglo 39.2 57 0.0012 23.4 4.0 72 96-169 16-91 (92)
78 cd06489 p23_CS_hSgt1_like p23_ 38.8 68 0.0015 22.4 4.3 33 149-181 43-76 (84)
79 cd07687 IgC_TCR_delta Immunogl 32.9 75 0.0016 23.5 3.7 60 50-120 10-69 (80)
80 KOG0710|consensus 29.1 85 0.0018 26.2 4.0 39 143-181 89-128 (196)
81 cd06493 p23_NUDCD1_like p23_NU 29.1 2.1E+02 0.0045 20.1 6.7 59 45-119 7-66 (85)
82 PF04972 BON: BON domain; Int 26.0 1.3E+02 0.0028 19.6 3.8 22 56-77 13-34 (64)
83 PRK09774 fec operon regulator 26.0 2.8E+02 0.0062 24.5 7.0 25 154-179 184-208 (319)
84 PF11869 DUF3389: Protein of u 25.6 80 0.0017 23.1 2.8 27 160-186 13-39 (75)
85 cd00237 p23 p23 binds heat sho 24.5 3.1E+02 0.0067 20.6 8.4 59 44-117 9-67 (106)
86 cd05766 IgC_MHC_II_beta Class 23.9 2.8E+02 0.0061 19.9 5.6 70 45-119 14-83 (94)
87 PF07654 C1-set: Immunoglobuli 23.5 79 0.0017 21.8 2.5 27 45-71 8-35 (83)
88 PF14913 DPCD: DPCD protein fa 20.7 5.3E+02 0.012 22.1 7.2 56 33-104 83-140 (194)
89 PLN03088 SGT1, suppressor of 20.7 3.4E+02 0.0073 24.3 6.5 64 44-120 164-227 (356)
90 cd06492 p23_mNUDC_like p23-lik 20.6 2E+02 0.0044 20.7 4.2 53 48-116 10-65 (87)
91 PF14014 DUF4230: Protein of u 20.6 1.2E+02 0.0025 23.5 3.1 34 45-78 45-78 (157)
No 1
>KOG3591|consensus
Probab=99.94 E-value=3.6e-27 Score=193.95 Aligned_cols=84 Identities=27% Similarity=0.271 Sum_probs=77.9
Q ss_pred CCceEeeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEe
Q psy16269 36 SPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTS 115 (186)
Q Consensus 36 ~p~i~~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstl 115 (186)
.....+.+++++|+|+|||++|+||||+||+.|+.|+|+|||++|+|++ |+++|+|+|+|.||++|||++|+|+|
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~-----G~v~R~F~R~y~LP~~vdp~~V~S~L 136 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEH-----GYVSRSFVRKYLLPEDVDPTSVTSTL 136 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCC-----CeEEEEEEEEecCCCCCChhheEEee
Confidence 3456677899999999999999999999999999999999999998765 79999999999999999999999999
Q ss_pred cCCCccccc
Q psy16269 116 SSNDALTAA 124 (186)
Q Consensus 116 s~~~~L~~a 124 (186)
|+||.||..
T Consensus 137 S~dGvLtI~ 145 (173)
T KOG3591|consen 137 SSDGVLTIE 145 (173)
T ss_pred CCCceEEEE
Confidence 999999554
No 2
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.90 E-value=1.4e-23 Score=156.74 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=71.0
Q ss_pred eCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 42 DGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 42 ~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
.+++++|+|.|||++|+||||+|++.+++|+|+|+|++++++ +|+++|+|+|+|.||++||+++|+|+|+.||.|
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e-----~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL 85 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKE-----GGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLL 85 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCC-----CCEEEEEEEEEEECCCCCCchhEEEEeCCCCeE
Confidence 457899999999999999999999999999999999987653 369999999999999999999999999999999
Q ss_pred c
Q psy16269 122 T 122 (186)
Q Consensus 122 ~ 122 (186)
+
T Consensus 86 ~ 86 (91)
T cd06480 86 I 86 (91)
T ss_pred E
Confidence 4
No 3
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.82 E-value=7e-20 Score=134.11 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=70.7
Q ss_pred eeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCc
Q psy16269 41 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDA 120 (186)
Q Consensus 41 ~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~ 120 (186)
..+++++|+|.+|+.+|+||+|+|++.+|.|+|+|+|+++.++ .++++|+|+|+|.||++||++.|+|+++.||.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~-----~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGv 76 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDR-----HGFVSREFTRTYILPMDVDPLLVRASLSHDGI 76 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecC-----CCEEEEEEEEEEECCCCCChhhEEEEecCCCE
Confidence 3468999999999999999999999999999999999766532 46999999999999999999999999999999
Q ss_pred ccc
Q psy16269 121 LTA 123 (186)
Q Consensus 121 L~~ 123 (186)
|+.
T Consensus 77 L~I 79 (83)
T cd06476 77 LCI 79 (83)
T ss_pred EEE
Confidence 943
No 4
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.79 E-value=5.3e-19 Score=129.50 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=70.2
Q ss_pred eeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCc
Q psy16269 41 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDA 120 (186)
Q Consensus 41 ~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~ 120 (186)
+..+++.|.|.+|+.+|+||||+|++.+|.|+|+|+|+++.++ .++.+|+|+|+|.||++||++.|+|+++.||.
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~-----~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGv 76 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDE-----HGFISREFQRKYRIPADVDPLTITSSLSPDGV 76 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCC-----CCEEEEEEEEEEECCCCCChHHcEEEeCCCCE
Confidence 3457999999999999999999999999999999999876542 46899999999999999999999999999999
Q ss_pred cc
Q psy16269 121 LT 122 (186)
Q Consensus 121 L~ 122 (186)
|+
T Consensus 77 L~ 78 (84)
T cd06498 77 LT 78 (84)
T ss_pred EE
Confidence 94
No 5
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.79 E-value=6.4e-19 Score=129.49 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=71.5
Q ss_pred EeeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCC
Q psy16269 40 QEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSND 119 (186)
Q Consensus 40 ~~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~ 119 (186)
.+..+++.|.|.+|+.+|+||+|+|++.++.|+|+|+|++++++ +++..|+|+|+|.||++||+++|+|+|+.||
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~-----~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dG 78 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDD-----HGYISREFHRRYRLPSNVDQSAITCSLSADG 78 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCC-----CCEEEEEEEEEEECCCCCChHHeEEEeCCCC
Confidence 45568999999999999999999999999999999999766532 4799999999999999999999999999999
Q ss_pred cccc
Q psy16269 120 ALTA 123 (186)
Q Consensus 120 ~L~~ 123 (186)
.|+.
T Consensus 79 vL~I 82 (86)
T cd06497 79 MLTF 82 (86)
T ss_pred EEEE
Confidence 9943
No 6
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.78 E-value=9.8e-19 Score=127.48 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=70.0
Q ss_pred eCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 42 DGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 42 ~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
..+++.|.|.+|+.+|+||+|+|++.++.|+|+|+|+++.++ +++++|+|.|+|.||.+||++.|+|+++.||.|
T Consensus 3 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~-----~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL 77 (83)
T cd06478 3 RLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDE-----HGFISREFHRRYRLPPGVDPAAITSSLSADGVL 77 (83)
T ss_pred eecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCC-----CCEEEEEEEEEEECCCCcChHHeEEEECCCCEE
Confidence 457899999999999999999999999999999998765432 468999999999999999999999999999999
Q ss_pred cc
Q psy16269 122 TA 123 (186)
Q Consensus 122 ~~ 123 (186)
+.
T Consensus 78 ~I 79 (83)
T cd06478 78 TI 79 (83)
T ss_pred EE
Confidence 43
No 7
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.75 E-value=5.4e-18 Score=124.49 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=69.3
Q ss_pred eCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 42 DGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 42 ~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
+.++++|.|.+|+.+|+||+|+|++.++.|+|+|+|+.+.++ ++++.|+|+|+|.||++||++.|+|++..||.|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~-----~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL 77 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDE-----HGFISRSFTRQYQLPDGVEHKDLSAMLCHDGIL 77 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCC-----CCEEEEEEEEEEECCCCcchheEEEEEcCCCEE
Confidence 357899999999999999999999999999999999875432 468899999999999999999999999999999
Q ss_pred c
Q psy16269 122 T 122 (186)
Q Consensus 122 ~ 122 (186)
+
T Consensus 78 ~ 78 (83)
T cd06477 78 V 78 (83)
T ss_pred E
Confidence 4
No 8
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.72 E-value=2.5e-17 Score=121.27 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=69.7
Q ss_pred eeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCc
Q psy16269 41 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDA 120 (186)
Q Consensus 41 ~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~ 120 (186)
+++++++|.|.+|+.+|+||+|+|++.+|.|+|+|+|+...++.. ....+.+++|+|+|.||++||+++|+|+++.||.
T Consensus 2 ~~~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~-~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGv 80 (87)
T cd06481 2 GKDGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEK-GSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGH 80 (87)
T ss_pred CCCccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCC-CcEEEEeeEEEEEEECCCCcChHHeEEEeCCCce
Confidence 457899999999999999999999999999999999976543321 1123567999999999999999999999999999
Q ss_pred cc
Q psy16269 121 LT 122 (186)
Q Consensus 121 L~ 122 (186)
|+
T Consensus 81 L~ 82 (87)
T cd06481 81 LH 82 (87)
T ss_pred EE
Confidence 94
No 9
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.70 E-value=7.1e-17 Score=118.61 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=70.4
Q ss_pred EeeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCC
Q psy16269 40 QEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSND 119 (186)
Q Consensus 40 ~~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~ 119 (186)
.+..+++.|.|.+|+.+|+||+|+|++.++.|+|+|+|+++.++ +++..|+|.|+|.||++||+++|+|++..||
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~-----~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dG 78 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDE-----HGFVSRCFTRKYTLPPGVDPTAVTSSLSPDG 78 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCC-----CCEEEEEEEEEEECCCCCCHHHcEEEECCCC
Confidence 34558999999999999999999999999999999999865543 3688999999999999999999999999999
Q ss_pred ccc
Q psy16269 120 ALT 122 (186)
Q Consensus 120 ~L~ 122 (186)
.|+
T Consensus 79 vL~ 81 (86)
T cd06475 79 ILT 81 (86)
T ss_pred eEE
Confidence 994
No 10
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.69 E-value=1.1e-16 Score=116.96 Aligned_cols=74 Identities=18% Similarity=0.241 Sum_probs=65.6
Q ss_pred eCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 42 DGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 42 ~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
..++++|.|.+|+.+|+||+|+|++.+|.|.|+|+++. +. +..+++|+|+|.||++||++.|+|+|+.||.|
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~---~~-----~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL 75 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLA---SD-----GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTL 75 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEec---cC-----CCEEEEEEEEEECCCCcCHHHeEEEecCCCEE
Confidence 45789999999999999999999999999999998642 11 24689999999999999999999999999999
Q ss_pred cc
Q psy16269 122 TA 123 (186)
Q Consensus 122 ~~ 123 (186)
+.
T Consensus 76 ~I 77 (81)
T cd06479 76 TI 77 (81)
T ss_pred EE
Confidence 43
No 11
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.66 E-value=5.7e-16 Score=111.94 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=67.5
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcccc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDALTA 123 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L~~ 123 (186)
+.+.|.|.+|+.+|+||+|+|++.++.|.|+|+++...+ .+++.+++|+|+|.||++||+++++|+++++|.|+.
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~-----~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I 79 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED-----EHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTI 79 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeecc-----CCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEE
Confidence 346999999999999999999999999999999886543 246889999999999999999999999999999943
No 12
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.57 E-value=1.2e-14 Score=107.71 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=67.9
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCccc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDALT 122 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L~ 122 (186)
+++.|.|.+|+.+|+||+|+|++.++.|+|+|++++..++.+ ...+.+.+|.|+|.||.+||++.|+|++.++|.|+
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~--~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~ 82 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLG--SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVK 82 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCC--ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEE
Confidence 789999999999999999999999999999999876543222 22478899999999999999999999999999984
No 13
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.43 E-value=4.2e-13 Score=98.95 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=59.4
Q ss_pred eCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCcee----eeeEEEEEecCCCCCCCCceEEecC
Q psy16269 42 DGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRD----RSQNRRQQTIDGNIGSSSNTVTSSS 117 (186)
Q Consensus 42 ~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~v----sReF~R~y~LP~~VD~~~vtstls~ 117 (186)
..+++.|.|.+|+.+|.||+|+|++.++.|.|.|++.....+. .++. .+.|.|+|.||++||++.++|++ .
T Consensus 3 ~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~----~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~ 77 (102)
T PF00011_consen 3 KEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDD----RYYRSERRYGSFERSIRLPEDVDPDKIKASY-E 77 (102)
T ss_dssp EESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTT----CEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-T
T ss_pred EECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeee----eeeecccccceEEEEEcCCCcCCcceEEEEe-c
Confidence 4578999999999999999999999999999999999222211 1222 37999999999999999999999 8
Q ss_pred CCccc
Q psy16269 118 NDALT 122 (186)
Q Consensus 118 ~~~L~ 122 (186)
||.|+
T Consensus 78 ~GvL~ 82 (102)
T PF00011_consen 78 NGVLT 82 (102)
T ss_dssp TSEEE
T ss_pred CCEEE
Confidence 99993
No 14
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.34 E-value=2.9e-12 Score=90.45 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=65.8
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCC-CCCCceeeeeEEEEEecCCCCCCCCceEEecCCCccc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCE-PIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDALT 122 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~-~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L~ 122 (186)
+++.|.+.+|+.+|.|++|+|++.++.|.|+|++........ ....++..++|.|+|.||.++|++.++|++.+ |.|+
T Consensus 5 ~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~-G~L~ 83 (88)
T cd06464 5 TDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN-GVLT 83 (88)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC-CEEE
Confidence 568999999999999999999999999999999986433210 01134678999999999999999999999997 8883
No 15
>KOG3591|consensus
Probab=99.34 E-value=1.2e-12 Score=107.93 Aligned_cols=46 Identities=33% Similarity=0.374 Sum_probs=42.9
Q ss_pred CCceeeecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccccc
Q psy16269 138 SPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNSY 183 (186)
Q Consensus 138 ~p~i~~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~~ 183 (186)
.+.+++.+++++|+|+|||++|+||||+||+.|+.|+|+||||+|+
T Consensus 62 ~~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~ 107 (173)
T KOG3591|consen 62 SGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKE 107 (173)
T ss_pred ccccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeecccc
Confidence 4566788899999999999999999999999999999999999995
No 16
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.7e-11 Score=94.72 Aligned_cols=89 Identities=11% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCCCceEeeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeee--ecccCCCCCCceeeeeEEEEEecCCCCCCCCc
Q psy16269 34 ISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTK--TQIRCEPIPARRDRSQNRRQQTIDGNIGSSSN 111 (186)
Q Consensus 34 ~~~p~i~~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHee--k~d~~~~~~~g~vsReF~R~y~LP~~VD~~~v 111 (186)
..+|.+.+...++.|.|.+||.+|++++|.|.+.++.|+|.|+++. +.+..+....++.++.|.|+|.||..||++.+
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~ 117 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVI 117 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccce
Confidence 3467787777888999999999999999999999999999999975 22222112234568999999999999999999
Q ss_pred eEEecCCCcccc
Q psy16269 112 TVTSSSNDALTA 123 (186)
Q Consensus 112 tstls~~~~L~~ 123 (186)
+|++. ||.|+.
T Consensus 118 ~A~~~-nGvL~I 128 (146)
T COG0071 118 KAKYK-NGLLTV 128 (146)
T ss_pred eeEee-CcEEEE
Confidence 99998 688843
No 17
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.17 E-value=1.2e-10 Score=85.57 Aligned_cols=77 Identities=10% Similarity=0.183 Sum_probs=59.0
Q ss_pred CCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCC-CCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 43 GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEP-IPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 43 ~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~-~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
.+++.|.|.+++.+|+||+|+|.+.++.|+|.|+++....+.+. ...++.+.+|.|+|.||.+||.. +|++. ||.|
T Consensus 8 ~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~-~GvL 84 (90)
T cd06470 8 TGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE-NGLL 84 (90)
T ss_pred cCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe-CCEE
Confidence 34689999999999999999999999999999998765432100 00012367899999999999974 66655 6777
Q ss_pred c
Q psy16269 122 T 122 (186)
Q Consensus 122 ~ 122 (186)
+
T Consensus 85 ~ 85 (90)
T cd06470 85 T 85 (90)
T ss_pred E
Confidence 3
No 18
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.16 E-value=9.2e-11 Score=86.07 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=62.6
Q ss_pred eeCCCCeEEEEEeCCCcCCCceEEEEECC-EEEEEEEeeeecccCCCC--CCceeeeeEEEEEecCCCCCCCCceEEecC
Q psy16269 41 EDGDNKLLKLRFDVSQYQPEEIVVKTVDN-KLLVSTLTTKTQIRCEPI--PARRDRSQNRRQQTIDGNIGSSSNTVTSSS 117 (186)
Q Consensus 41 ~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~-~L~V~gkHeek~d~~~~~--~~g~vsReF~R~y~LP~~VD~~~vtstls~ 117 (186)
+..+++.|.|.+|+.+|+||+|+|.+.++ .|+|+|+........+.. ...+.+.+|.|+|.||.+||++.++|++.
T Consensus 4 v~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~- 82 (92)
T cd06472 4 WKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLE- 82 (92)
T ss_pred EEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEE-
Confidence 34578999999999999999999999974 899999864321111100 00123679999999999999999999997
Q ss_pred CCccc
Q psy16269 118 NDALT 122 (186)
Q Consensus 118 ~~~L~ 122 (186)
||.|+
T Consensus 83 nGvL~ 87 (92)
T cd06472 83 NGVLT 87 (92)
T ss_pred CCEEE
Confidence 68884
No 19
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.16 E-value=2.4e-10 Score=83.57 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=64.9
Q ss_pred eEeeCCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCcee-----eeeEEEEEecCCCCCCCCceE
Q psy16269 39 IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRD-----RSQNRRQQTIDGNIGSSSNTV 113 (186)
Q Consensus 39 i~~~~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~v-----sReF~R~y~LP~~VD~~~vts 113 (186)
+.+..+++.|.|.+|+.+|+|++|+|.+.++.|+|.|+++...++.. ..+.+. +..|.|.|.|| +||++.++|
T Consensus 3 ~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~-~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKD-KKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred eeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccccc-ccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 34556899999999999999999999999999999999875332211 112233 34699999999 799999999
Q ss_pred EecCCCcccc
Q psy16269 114 TSSSNDALTA 123 (186)
Q Consensus 114 tls~~~~L~~ 123 (186)
++ .||.|+.
T Consensus 81 ~~-~dGvL~I 89 (93)
T cd06471 81 KY-ENGVLKI 89 (93)
T ss_pred EE-ECCEEEE
Confidence 99 6898843
No 20
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.14 E-value=1.9e-10 Score=91.59 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=63.5
Q ss_pred CceEee-CCCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEe
Q psy16269 37 PLIQED-GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTS 115 (186)
Q Consensus 37 p~i~~~-~~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstl 115 (186)
|-+.+. .+++.|.|.+|+.+|+|++|.|.+.++.|+|+|++.+..++.+.....+.+++|.|+|.||++||.+. |++
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANL 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEE
Confidence 555555 47899999999999999999999999999999997654321110000123468999999999999994 666
Q ss_pred cCCCcccc
Q psy16269 116 SSNDALTA 123 (186)
Q Consensus 116 s~~~~L~~ 123 (186)
. ||.|+.
T Consensus 113 ~-dGVL~I 119 (137)
T PRK10743 113 V-NGLLYI 119 (137)
T ss_pred e-CCEEEE
Confidence 5 788833
No 21
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.06 E-value=1.6e-10 Score=86.46 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=37.4
Q ss_pred ecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccccc
Q psy16269 144 DGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNSY 183 (186)
Q Consensus 144 ~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~~ 183 (186)
.+.+++|+|.|||++|+||||+||+.+|+|+|+|+|+++.
T Consensus 11 ~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~ 50 (91)
T cd06480 11 PNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQ 50 (91)
T ss_pred CCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECccc
Confidence 4578999999999999999999999999999999999874
No 22
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.00 E-value=1.4e-09 Score=87.19 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=61.4
Q ss_pred CceEeeC-CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceee-----eeEEEEEecCCCCCCCC
Q psy16269 37 PLIQEDG-DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDR-----SQNRRQQTIDGNIGSSS 110 (186)
Q Consensus 37 p~i~~~~-~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vs-----ReF~R~y~LP~~VD~~~ 110 (186)
|.+.+.. +++.|.|.+|+.+|++++|.|.+.+|.|+|.|+..... + ++.++. ..|.|+|.||++||.+
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~-~----~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPE-K----EVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEcccc-C----CCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 6555554 57799999999999999999999999999999854321 1 123443 4699999999999998
Q ss_pred ceEEecCCCccc
Q psy16269 111 NTVTSSSNDALT 122 (186)
Q Consensus 111 vtstls~~~~L~ 122 (186)
.|++. ||.|+
T Consensus 107 -~A~~~-nGVL~ 116 (142)
T PRK11597 107 -GATFV-NGLLH 116 (142)
T ss_pred -cCEEc-CCEEE
Confidence 57775 78883
No 23
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.86 E-value=1.5e-08 Score=68.28 Aligned_cols=71 Identities=15% Similarity=0.228 Sum_probs=62.7
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
..+.|.|.+++.+|.|++|.|++.++.|.|+|++..... ++...++|.+++.||..||++.+++++.. |.|
T Consensus 4 ~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~-~~l 74 (80)
T cd00298 4 TDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE------RERSYGEFERSFELPEDVDPEKSKASLEN-GVL 74 (80)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc------ceEeeeeEEEEEECCCCcCHHHCEEEEEC-CEE
Confidence 458999999999999999999999999999999885433 34678999999999999999999999996 655
No 24
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=98.50 E-value=1.7e-07 Score=68.64 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=37.3
Q ss_pred eecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccccc
Q psy16269 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNSY 183 (186)
Q Consensus 143 ~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~~ 183 (186)
+..++++|.|.+|+..|+||+|+|++.+|.|+|+|+|++++
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~ 42 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRM 42 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccee
Confidence 35688999999999999999999999999999999997653
No 25
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=98.35 E-value=7.4e-07 Score=65.42 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=38.7
Q ss_pred eeeecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 141 IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 141 i~~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
+++..+++.|.|.+|+..|+||+|.|++.+|.|+|+|+|+++
T Consensus 3 ~~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~ 44 (86)
T cd06497 3 SEVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSER 44 (86)
T ss_pred ceEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcce
Confidence 456779999999999999999999999999999999999764
No 26
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=98.32 E-value=8.4e-07 Score=64.92 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=37.0
Q ss_pred eecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 143 ~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
+..+++.|.|.+|+..|+||+|+|++.+|.|+|+|+|+++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~ 41 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEER 41 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcce
Confidence 4568899999999999999999999999999999999764
No 27
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=98.27 E-value=1.4e-06 Score=63.42 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=36.6
Q ss_pred eecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 143 ~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
+..+++.|.|.+|+..|+||+|+|++.+|.|+|+|+|+++
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~ 41 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEER 41 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceE
Confidence 4568899999999999999999999999999999998753
No 28
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=98.11 E-value=4.3e-06 Score=61.44 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=34.6
Q ss_pred cCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 145 GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 145 ~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
+++++|.|.+|+..|+|++|+|++.+|.|+|+|+|+.
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEee
Confidence 5679999999999999999999999999999999864
No 29
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=98.09 E-value=5.2e-06 Score=60.65 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=35.4
Q ss_pred eecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 143 ~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
+..+++.|.|.+|+..|+||+|+|++.+|.|.|+|.++.
T Consensus 3 v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 3 VKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred ccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEec
Confidence 346789999999999999999999999999999998753
No 30
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.06 E-value=6e-06 Score=60.64 Aligned_cols=38 Identities=21% Similarity=0.473 Sum_probs=35.2
Q ss_pred cCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 145 GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 145 ~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
.++++|.|.+|+..|+||+|+|++.++.|+|+|+|+.+
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~ 41 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVR 41 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccc
Confidence 46799999999999999999999999999999998653
No 31
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=98.03 E-value=9.5e-06 Score=59.53 Aligned_cols=41 Identities=27% Similarity=0.397 Sum_probs=37.6
Q ss_pred eeecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 142 QEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 142 ~~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
++..+++.|.|.+|+..|+||+|.|++.++.|+|+|+|+++
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~ 44 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEK 44 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcC
Confidence 45678899999999999999999999999999999999764
No 32
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.80 E-value=2.9e-05 Score=55.83 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=34.0
Q ss_pred CCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 146 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 146 ~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
+.+.|.|.+|+..|+|++|+|++.++.|+|+|+++..
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeee
Confidence 3479999999999999999999999999999998764
No 33
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=97.61 E-value=9.5e-05 Score=54.77 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=34.8
Q ss_pred cCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 145 GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 145 ~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
-+++.|.|.+|+..|+|++|.|++.+|.|+|+|++++
T Consensus 5 ~~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 5 CDSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred ccCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEec
Confidence 4789999999999999999999999999999999864
No 34
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.39 E-value=0.00029 Score=49.34 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=34.9
Q ss_pred cCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 145 GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 145 ~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
.+++.|.+.+|+..|.|++|+|++.++.|.|+|++...
T Consensus 4 e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 4 ETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred EcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecc
Confidence 35689999999999999999999999999999999854
No 35
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.33 E-value=0.00048 Score=50.47 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.7
Q ss_pred eecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecc
Q psy16269 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYT 180 (186)
Q Consensus 143 ~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHe 180 (186)
+..+++.|.|.+|+..|.|++|+|++.++.|+|+|++.
T Consensus 2 i~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~ 39 (102)
T PF00011_consen 2 IKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRK 39 (102)
T ss_dssp EEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEE
T ss_pred eEECCCEEEEEEECCCCChHHEEEEEecCccceeceee
Confidence 35688999999999999999999999999999999998
No 36
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=97.29 E-value=0.00053 Score=50.22 Aligned_cols=42 Identities=10% Similarity=0.283 Sum_probs=36.2
Q ss_pred eeeec-CCCcEEEEEEcCccCCCceEEEEeCCEEEEEEecccc
Q psy16269 141 IQEDG-DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 141 i~~~~-~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
+.+.. +++.|.|.+++-.|+||+|.|.+.++.|+|.|+++..
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~ 45 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADE 45 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEccc
Confidence 34444 4589999999999999999999999999999987654
No 37
>KOG0710|consensus
Probab=97.08 E-value=0.0011 Score=55.49 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=62.6
Q ss_pred eCCCCeEEEEEeCCCcCCCceEEEEECC-EEEEEEEeeeecccCCCCC----CceeeeeEEEEEecCCCCCCCCceEEec
Q psy16269 42 DGDNKLLKLRFDVSQYQPEEIVVKTVDN-KLLVSTLTTKTQIRCEPIP----ARRDRSQNRRQQTIDGNIGSSSNTVTSS 116 (186)
Q Consensus 42 ~~~~~kF~V~lDV~~F~PEEI~Vkv~~~-~L~V~gkHeek~d~~~~~~----~g~vsReF~R~y~LP~~VD~~~vtstls 116 (186)
....+.|.+.+|+.+-+-++|+|.+.++ .|.|.|++....++.+... .......|.|++.||++++.+.+.+.+.
T Consensus 90 ~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~ 169 (196)
T KOG0710|consen 90 KESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEME 169 (196)
T ss_pred ccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhh
Confidence 4478899999999999999999999998 5999999876554321100 0123458999999999999999999887
Q ss_pred CCCcc
Q psy16269 117 SNDAL 121 (186)
Q Consensus 117 ~~~~L 121 (186)
||.|
T Consensus 170 -nGVL 173 (196)
T KOG0710|consen 170 -NGVL 173 (196)
T ss_pred -CCeE
Confidence 5777
No 38
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=97.07 E-value=0.0031 Score=43.99 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=50.9
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
+.+...|++++.+-+++++.|...++.|.|.| ..|.+.+.||..||++..++++.+ |.|
T Consensus 4 t~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~------------------~~~~~~~~l~~~I~~e~~~~~~~~-~~l 62 (78)
T cd06469 4 TDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF------------------PPYLFELDLAAPIDDEKSSAKIGN-GVL 62 (78)
T ss_pred cCCEEEEEEEeCCCccccceEEEecCEEEEcC------------------CCEEEEEeCcccccccccEEEEeC-CEE
Confidence 56788999999999999999999999999977 136789999999999999999865 444
No 39
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0024 Score=50.62 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=40.5
Q ss_pred CCceeeecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 138 SPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 138 ~p~i~~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
.|.+.+...++.|.|.+||-.|++++|.|.+.++.|+|.|++++
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecc
Confidence 47778888888999999999999999999999999999999974
No 40
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=96.77 E-value=0.0032 Score=45.74 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=37.2
Q ss_pred eeeecCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 141 IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 141 i~~~~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
+.+...++.|.|.+|+-.|+|++|.|.+.++.|+|.|+++.
T Consensus 3 ~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 3 TDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred eeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcc
Confidence 45667889999999999999999999999999999998863
No 41
>PRK10743 heat shock protein IbpA; Provisional
Probab=96.70 E-value=0.0038 Score=49.74 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=37.8
Q ss_pred Cceeee-cCCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 139 PLIQED-GDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 139 p~i~~~-~~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
|.+.+. .+++.|.|.+|+-.|+|++|.|.+.+|.|+|+|++++
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECc
Confidence 445665 4789999999999999999999999999999998754
No 42
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=96.30 E-value=0.0091 Score=43.51 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=33.6
Q ss_pred eeecCCCcEEEEEEcCccCCCceEEEEeCC-EEEEEEec
Q psy16269 142 QEDGDNKLLKLRFDVSQYQPEEIVVKTVDN-KLLVLSTY 179 (186)
Q Consensus 142 ~~~~~~~~f~v~lDV~~F~PeEI~VK~~~~-~l~V~gkH 179 (186)
.+.+.++.|.|.+|+-.|+||+|+|++.++ .|+|+|+.
T Consensus 3 dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~ 41 (92)
T cd06472 3 DWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGER 41 (92)
T ss_pred cEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEe
Confidence 345688999999999999999999999864 89999975
No 43
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=96.21 E-value=0.03 Score=38.28 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDAL 121 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L 121 (186)
+.+...|.+++..-.++++.|.+.++.|.|.++... ...|...+.|+..||++..+.++.. +.|
T Consensus 4 ~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~-------------~~~~~~~~~L~~~I~~~~s~~~~~~-~~l 67 (84)
T cd06463 4 TLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG-------------GKEYLLEGELFGPIDPEESKWTVED-RKI 67 (84)
T ss_pred cccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC-------------CCceEEeeEccCccchhhcEEEEeC-CEE
Confidence 467788999999999999999999999999997541 1456788899999999999999965 444
No 44
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=96.00 E-value=0.015 Score=38.63 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCCcEEEEEEcCccCCCceEEEEeCCEEEEEEeccc
Q psy16269 146 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 146 ~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
.++.+.+.+++..+.+++|.|++.++.|.|+|++..
T Consensus 4 ~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~ 39 (80)
T cd00298 4 TDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREE 39 (80)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcC
Confidence 447899999999999999999999999999999863
No 45
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=95.85 E-value=0.018 Score=46.26 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=36.3
Q ss_pred Cceeeec-CCCcEEEEEEcCccCCCceEEEEeCCEEEEEEec
Q psy16269 139 PLIQEDG-DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 139 p~i~~~~-~~~~f~v~lDV~~F~PeEI~VK~~~~~l~V~gkH 179 (186)
|.+.+.. +++.|.|.+|+-.|++++|.|.+.+|.|+|+|+.
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~ 74 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTP 74 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEE
Confidence 5566664 5679999999999999999999999999999974
No 46
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=94.71 E-value=0.14 Score=35.85 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCC
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSN 118 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~ 118 (186)
.++...|.+.++...++++.|...++.|.|.+++. + .++|.-.+.|+..|+++..+.++...
T Consensus 5 t~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~------~-------~~~~~~~~~L~~~I~~~~s~~~~~~~ 66 (84)
T cd06466 5 TDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP------G-------GSEYQLELDLFGPIDPEQSKVSVLPT 66 (84)
T ss_pred cCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC------C-------CCeEEEecccccccCchhcEEEEeCe
Confidence 56778899999999999999999999999988754 0 14577788999999999888887753
No 47
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=94.35 E-value=0.59 Score=31.61 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=49.0
Q ss_pred CCCeEEEEEeCCC--cCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCC
Q psy16269 44 DNKLLKLRFDVSQ--YQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSN 118 (186)
Q Consensus 44 ~~~kF~V~lDV~~--F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~ 118 (186)
+.+...|.+.+.. .+|++|.|.+.++.|.|.++... + .+|.-...|...|+++..+.++..+
T Consensus 8 t~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~----------~---~~~~~~~~L~~~I~~~~s~~~~~~~ 71 (79)
T PF04969_consen 8 TDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGD----------G---KEYLLEGELFGEIDPDESTWKVKDN 71 (79)
T ss_dssp ESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETT----------S---CEEEEEEEBSS-BECCCEEEEEETT
T ss_pred CCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccC----------C---ceEEEEEEEeeeEcchhcEEEEECC
Confidence 5677888999955 56999999999999999976441 1 6677888899999999998888864
No 48
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=89.69 E-value=0.32 Score=40.32 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCcccccCCCCCCc----ccc
Q psy16269 59 PEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNT----YLD 134 (186)
Q Consensus 59 PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~L~~a~~p~~~~----~~~ 134 (186)
|+.++|.+.++.|.|.|..- .+++.|...+.+ .+|-+.+..+...+..-.-+...+++. -+.
T Consensus 12 P~~V~v~i~~~~v~vkGp~G------------~l~~~~~~~v~i--~~~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~ 77 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG------------TLSRKIPDLITI--EIQDNSLFVSKKDESKKARALHGLYRTLINNMVI 77 (178)
T ss_pred CCCCEEEEECCEEEEECCCE------------EEEEECCCCeEE--EEeCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998744 456666553322 122233433332221110001111111 112
Q ss_pred cCCCCc----------eeeecCCCcEEEEE----EcCccCCCceEEEEeCC-EEEEEEecc
Q psy16269 135 NISSPL----------IQEDGDNKLLKLRF----DVSQYQPEEIVVKTVDN-KLLVLSTYT 180 (186)
Q Consensus 135 ~~~~p~----------i~~~~~~~~f~v~l----DV~~F~PeEI~VK~~~~-~l~V~gkHe 180 (186)
++..++ ..+...++...+.| ++.-.=|++++|++.+. .|+|+|--.
T Consensus 78 GVt~Gf~~~L~lvGvGyr~~~~g~~l~l~LG~sh~i~~~IP~gv~v~~~~~t~I~i~G~dk 138 (178)
T CHL00140 78 GVSEGFEKKLELQGVGYRAQVQGKDLILNLGYSHPVKIKIPPGISVEVENNTNITIKGIDK 138 (178)
T ss_pred hcccCceEEEEEEEEEEEEEEeCCcEEEEecCCeeEEEECCCCeEEEeCCCCEEEEEECCH
Confidence 222221 12223344444433 33455699999999876 799999543
No 49
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=89.22 E-value=0.86 Score=38.03 Aligned_cols=106 Identities=12% Similarity=0.007 Sum_probs=56.5
Q ss_pred CCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEE-EEecCCCCCCCCceEEecCCCcccccCCCCCCc-----
Q psy16269 58 QPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRR-QQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNT----- 131 (186)
Q Consensus 58 ~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R-~y~LP~~VD~~~vtstls~~~~L~~a~~p~~~~----- 131 (186)
=|+.++|++.++.|.|+|.+- ..++.|.. .+.+ .++-..+..+...+..-..+...+++.
T Consensus 12 IP~~V~v~i~~~~v~VkGp~G------------~L~~~~~~~~v~i--~~~~~~i~v~~~~~~kk~ra~~gt~rslI~Nm 77 (180)
T PRK05518 12 IPEGVTVEIEGLVVTVKGPKG------------ELTRDFWYPGVTI--SVEDGKVVIETEFARKKTKAMVGTFASHIKNM 77 (180)
T ss_pred cCCCCEEEEECCEEEEECCCe------------EEEEEecCCcEEE--EEECCEEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 399999999999999999755 45566644 1211 111123333332221110011111111
Q ss_pred ------------ccccCCCCceeeecCCCcEEE--EE----EcCccCCCceEEEEeCCEEEEEEe
Q psy16269 132 ------------YLDNISSPLIQEDGDNKLLKL--RF----DVSQYQPEEIVVKTVDNKLLVLST 178 (186)
Q Consensus 132 ------------~~~~~~~p~i~~~~~~~~f~v--~l----DV~~F~PeEI~VK~~~~~l~V~gk 178 (186)
.+-++.-|+ .....++.+.+ .| ++.-.-|+.|+|.+.+..|+|+|-
T Consensus 78 I~GVt~Gf~~~LelvGvGypi-ra~~~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~t~I~i~Gi 141 (180)
T PRK05518 78 IKGVTEGFEYKLKIVYSHFPM-QVKVQGNEVVIENFLGEKSPRRAKILGGVKVKVKGEDVIVEGI 141 (180)
T ss_pred heecccceEEEEEEEecCccE-EEEEcCCEEEEEeccccceeEEEeCCCCeEEEecCCEEEEEeC
Confidence 111222221 22334455554 23 556678999999998878999994
No 50
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=89.07 E-value=2 Score=36.11 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=50.5
Q ss_pred CCceEeeCCCC-eEEEEEeCCCcCCCc-eEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceE
Q psy16269 36 SPLIQEDGDNK-LLKLRFDVSQYQPEE-IVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTV 113 (186)
Q Consensus 36 ~p~i~~~~~~~-kF~V~lDV~~F~PEE-I~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vts 113 (186)
.+.+.+...++ .+.|..|+.+-..++ |.|.+..+...+..++. ..+.+++.||.. +++..++
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~---------------~~~~krv~L~~~-~~e~~~~ 154 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG---------------EKYLKRVALPWP-DPEITSA 154 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC---------------CceEeeEecCCC-ccceeeE
Confidence 45555554444 799999999998888 99999955544444333 114589999977 6788888
Q ss_pred EecCCCccccc
Q psy16269 114 TSSSNDALTAA 124 (186)
Q Consensus 114 tls~~~~L~~a 124 (186)
++. ||.|...
T Consensus 155 t~n-NgILEIr 164 (177)
T PF05455_consen 155 TFN-NGILEIR 164 (177)
T ss_pred EEe-CceEEEE
Confidence 876 6777443
No 51
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=88.84 E-value=0.55 Score=39.46 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=57.1
Q ss_pred cCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEE---EEecCCCCCCCCceEEecCCCcccccCCCCCCcc-
Q psy16269 57 YQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRR---QQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNTY- 132 (186)
Q Consensus 57 F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R---~y~LP~~VD~~~vtstls~~~~L~~a~~p~~~~~- 132 (186)
.=|+.++|.+.++.|.|+|..- ..++.|.. .+.+ .++-..|..+...+..-..|...+++..
T Consensus 11 ~IP~~V~V~i~~~~v~VkGp~G------------~L~~~~~~~~~~i~i--~~~~~~i~v~~~~~~~k~~a~~Gt~rslI 76 (190)
T PTZ00027 11 RIPEGVTVTVKSRKVTVTGKYG------------ELTRSFRHLPVDIKL--SKDGKYIKVEMWFGTPSHLACIRTVCSHI 76 (190)
T ss_pred ecCCCCEEEEECCEEEEECCCc------------eEEEEecCCCceEEE--EeCCCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3499999999999999998743 56666654 2322 0111223333222111001111122111
Q ss_pred ---cccCCCCce------------e--eecCCCcEEE--EE----EcCccCCCceEEEEeC---CEEEEEEe
Q psy16269 133 ---LDNISSPLI------------Q--EDGDNKLLKL--RF----DVSQYQPEEIVVKTVD---NKLLVLST 178 (186)
Q Consensus 133 ---~~~~~~p~i------------~--~~~~~~~f~v--~l----DV~~F~PeEI~VK~~~---~~l~V~gk 178 (186)
+.++..++. + ...+++...+ .| ++.-.=|+.|+|.+.. +.|+|+|-
T Consensus 77 ~NmI~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~ 148 (190)
T PTZ00027 77 KNMMTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGA 148 (190)
T ss_pred HHHhhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeC
Confidence 122222211 2 2234455555 23 5556779999999975 58999994
No 52
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=87.42 E-value=0.66 Score=38.96 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEE---EEecCCCCCCCCceEEecCCCcccccCCCCCCc----
Q psy16269 59 PEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRR---QQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNT---- 131 (186)
Q Consensus 59 PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R---~y~LP~~VD~~~vtstls~~~~L~~a~~p~~~~---- 131 (186)
|+.++|++.++.|.|.|..- ..++.|.. .+.+ +.+-..|..+...+..-..+-..+++.
T Consensus 12 P~~V~V~i~~~~ItVkGpkG------------~Ls~~~~~~~~~i~i--~~~~~~I~v~~~~~~kk~~al~Gt~rslI~N 77 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG------------TLTKDLRHLQLDFRV--NKKNRTFTAVRWFGSKIPNSTINTALSHVRN 77 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc------------EEEEEcCCCCcEEEE--EecCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999998744 45666665 3433 222223333322221110011111111
Q ss_pred -------------ccccCCCCceeeecCCCcEEE--EE----EcCccCCCceEEEEeC-----CEEEEEEe
Q psy16269 132 -------------YLDNISSPLIQEDGDNKLLKL--RF----DVSQYQPEEIVVKTVD-----NKLLVLST 178 (186)
Q Consensus 132 -------------~~~~~~~p~i~~~~~~~~f~v--~l----DV~~F~PeEI~VK~~~-----~~l~V~gk 178 (186)
.+.++.-|. .+...++.+.+ .| ++.-.=|+.++|++.+ +.|+|+|-
T Consensus 78 MI~GVt~GF~k~L~ivgvgyp~-ra~v~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~ 147 (189)
T PTZ00179 78 MITGVTKGFRFKVRFAYAHFPI-SVSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGN 147 (189)
T ss_pred HhhhhcCCEEEEEEEEEeCcce-EEEEcCCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeC
Confidence 112222222 23335555555 23 4446679999999985 47999984
No 53
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=87.35 E-value=0.71 Score=38.12 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.1
Q ss_pred EcCccCCCceEEEEeCCEEEEEEe
Q psy16269 155 DVSQYQPEEIVVKTVDNKLLVLST 178 (186)
Q Consensus 155 DV~~F~PeEI~VK~~~~~l~V~gk 178 (186)
++.-.-|+.|+|.+.+..|+|+|-
T Consensus 112 ~i~~~iP~gI~v~~~~~~I~i~G~ 135 (170)
T TIGR03653 112 PRRAKIPGGVKVKVKGEEVIVTGI 135 (170)
T ss_pred eEEEECCCCeEEEecCCEEEEEeC
Confidence 555677999999998889999994
No 54
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=87.16 E-value=1.2 Score=36.84 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=18.2
Q ss_pred CCceEEEEECCEEEEEEEee
Q psy16269 59 PEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 59 PEEI~Vkv~~~~L~V~gkHe 78 (186)
|+.++|.+.++.|.|+|..-
T Consensus 11 P~~V~v~~~~~~v~v~Gp~G 30 (175)
T TIGR03654 11 PAGVEVTIDGNVVTVKGPKG 30 (175)
T ss_pred CCCcEEEEeCCEEEEEcCCe
Confidence 99999999999999998754
No 55
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=86.39 E-value=3.9 Score=28.86 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=49.0
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCC
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSN 118 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~ 118 (186)
.++.-.|.+.+++..+++++|+..++.|.+.++... .++|.-.+.|...|+|+..+.++...
T Consensus 5 ~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~-------------~~~y~~~~~L~~~I~p~~s~~~v~~~ 66 (84)
T cd06489 5 TESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS-------------GNDYSLKLHLLHPIVPEQSSYKILST 66 (84)
T ss_pred cCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC-------------CCcEEEeeecCceecchhcEEEEeCc
Confidence 355678889999999999999999999999987631 12355667999999999777777643
No 56
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=82.89 E-value=2.1 Score=35.37 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.2
Q ss_pred CCceEEEEECCEEEEEEEee
Q psy16269 59 PEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 59 PEEI~Vkv~~~~L~V~gkHe 78 (186)
|+.++|.+.++.|.|.|..-
T Consensus 12 P~~V~v~~~~~~v~vkGp~G 31 (178)
T PRK05498 12 PAGVEVTINGNVVTVKGPKG 31 (178)
T ss_pred CCCCEEEEECCEEEEECCCE
Confidence 99999999999999999754
No 57
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=76.69 E-value=8.5 Score=25.86 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=17.0
Q ss_pred CcEEEEEEcC-ccCCCceEEEEeCCEEEEEEec
Q psy16269 148 KLLKLRFDVS-QYQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 148 ~~f~v~lDV~-~F~PeEI~VK~~~~~l~V~gkH 179 (186)
..|.+.++.. .-.|++..+++.++.|.|.-..
T Consensus 41 ~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K 73 (84)
T cd06463 41 KEYLLEGELFGPIDPEESKWTVEDRKIEITLKK 73 (84)
T ss_pred CceEEeeEccCccchhhcEEEEeCCEEEEEEEE
Confidence 4455555542 4445556666666666555443
No 58
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=74.28 E-value=32 Score=25.37 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=47.2
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCC
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSN 118 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~ 118 (186)
..+.-.|++.+..- +++.|+...+.|.|.++... + .+.|.-...|...|+++.-+.++...
T Consensus 8 t~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~--~----------~~~y~~~~~L~~~I~pe~s~~~v~~~ 68 (108)
T cd06465 8 RSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG--G----------GKKYEFDLEFYKEIDPEESKYKVTGR 68 (108)
T ss_pred CCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC--C----------CeeEEEEeEhhhhccccccEEEecCC
Confidence 45566777777764 88999999999999996431 0 14456677999999999999998773
No 59
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=73.62 E-value=2.2 Score=31.46 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=30.6
Q ss_pred CceEeeCCCCeEEE--EEeCCCcCCCceEEEEECCEEEEEEEee
Q psy16269 37 PLIQEDGDNKLLKL--RFDVSQYQPEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 37 p~i~~~~~~~kF~V--~lDV~~F~PEEI~Vkv~~~~L~V~gkHe 78 (186)
|.+... +.....| .-++-.|.+++|.+++..+.|.|+|+.=
T Consensus 20 p~itl~-gr~~~~Ien~k~I~~y~~~~I~l~t~~G~l~I~G~~L 62 (85)
T TIGR02856 20 PRITLI-GNEHIYIENHRGLVVFSPEEVKLNSTNGKITIEGKNF 62 (85)
T ss_pred CEEEEE-CCcEEEEECccceEEECCCEEEEEcCceEEEEEcccE
Confidence 555443 3444444 4577799999999999999999999854
No 60
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=73.51 E-value=2.6 Score=31.03 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=23.2
Q ss_pred EEcCccCCCceEEEEeCCEEEEEEec
Q psy16269 154 FDVSQYQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 154 lDV~~F~PeEI~VK~~~~~l~V~gkH 179 (186)
-+|-.|.+++|.+++..+.|.|.|+.
T Consensus 36 k~I~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 36 RGLVVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred cceEEECCCEEEEEcCceEEEEEccc
Confidence 36778999999999999999999975
No 61
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=72.03 E-value=3.4 Score=28.69 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.8
Q ss_pred EeCCCcCCCceEEEEECCEEEEEEEee
Q psy16269 52 FDVSQYQPEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 52 lDV~~F~PEEI~Vkv~~~~L~V~gkHe 78 (186)
-.+-.|.+++|.+++..+.|.|.|+.=
T Consensus 18 k~I~~f~~~~I~l~t~~g~l~I~G~~L 44 (66)
T PF07873_consen 18 KGILSFDDEEIRLNTKKGKLTIKGEGL 44 (66)
T ss_dssp EEEEEEETTEEEEEETTEEEEEEEEEE
T ss_pred ccEEEECCCEEEEEeCCEEEEEECceE
Confidence 456689999999999999999999864
No 62
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=70.36 E-value=6.6 Score=32.98 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=23.9
Q ss_pred CCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEE
Q psy16269 59 PEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQ 100 (186)
Q Consensus 59 PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y 100 (186)
|+.++|++.++.+.|.|.+- .+++.|....
T Consensus 12 P~gV~V~i~~~~v~vkGpkG------------eL~~~~~~~~ 41 (178)
T COG0097 12 PAGVTVSIEGQVVTVKGPKG------------ELTREFHDNV 41 (178)
T ss_pred CCCeEEEEeccEEEEECCCc------------EEEEEecCcc
Confidence 99999999999999988653 4667776554
No 63
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=70.16 E-value=3.6 Score=28.55 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.8
Q ss_pred EcCccCCCceEEEEeCCEEEEEEec
Q psy16269 155 DVSQYQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 155 DV~~F~PeEI~VK~~~~~l~V~gkH 179 (186)
.+-.|.+++|.+++..+.|.|.|+.
T Consensus 19 ~I~~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 19 GILSFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEEEEETTEEEEEETTEEEEEEEEE
T ss_pred cEEEECCCEEEEEeCCEEEEEECce
Confidence 5668999999999999999999975
No 64
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=69.06 E-value=3.4 Score=30.63 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.7
Q ss_pred EEeCCCcCCCceEEEEECCEEEEEEEee
Q psy16269 51 RFDVSQYQPEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 51 ~lDV~~F~PEEI~Vkv~~~~L~V~gkHe 78 (186)
..+|-.|.|++|.+.+.-+.|.|.|+.=
T Consensus 16 V~~V~sfd~~~I~l~T~~G~L~I~G~~L 43 (85)
T TIGR02892 16 VKEVISFDDEEILLETVMGFLTIKGQEL 43 (85)
T ss_pred cceEEEECCCEEEEEeCcEEEEEEccee
Confidence 4577889999999999999999999843
No 65
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=67.53 E-value=4.6 Score=29.94 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=24.0
Q ss_pred EEEcCccCCCceEEEEeCCEEEEEEec
Q psy16269 153 RFDVSQYQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 153 ~lDV~~F~PeEI~VK~~~~~l~V~gkH 179 (186)
..+|-.|.|++|.+.+.-+.|.|.|+.
T Consensus 16 V~~V~sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 16 VKEVISFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred cceEEEECCCEEEEEeCcEEEEEEcce
Confidence 357889999999999999999999964
No 66
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=64.53 E-value=14 Score=25.21 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=27.6
Q ss_pred CcEEEEEEcC-ccCCCceEEEEeCCEEEEEEecccc
Q psy16269 148 KLLKLRFDVS-QYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 148 ~~f~v~lDV~-~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
+.|.+.++.. .-.|++.++++.++.|.|.-...++
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 6788888773 5589999999999999888766543
No 67
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=59.01 E-value=95 Score=26.90 Aligned_cols=59 Identities=8% Similarity=0.162 Sum_probs=49.4
Q ss_pred CCCeEEEEEeCCCc-CCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCC
Q psy16269 44 DNKLLKLRFDVSQY-QPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSN 118 (186)
Q Consensus 44 ~~~kF~V~lDV~~F-~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~ 118 (186)
..+.+.|.+++... +..+|.+.+.+++|.|...+. .|.=.+.||-.||.+..+|.|...
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------------~y~L~l~LP~~V~~~~~~Akf~~~ 318 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------------KYRLDLPLPYPVDEDNGKAKFDKK 318 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------------ceEEEccCCCcccCCCceEEEccC
Confidence 46788889999888 999999999999999977542 233568999999999999999864
No 68
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=54.96 E-value=72 Score=22.48 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=47.4
Q ss_pred CCCeEEEEEeCCCcCC---CceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEE-ecCCCCCCCCceEEecCCC
Q psy16269 44 DNKLLKLRFDVSQYQP---EEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQ-TIDGNIGSSSNTVTSSSND 119 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~P---EEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y-~LP~~VD~~~vtstls~~~ 119 (186)
..+.-.|.+++..-.+ +++.|+...+.|.|.++..+ | .+|.=.+ .|-..|+++.-+.++....
T Consensus 9 t~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~----------~---~~~~~~~~~L~~~I~~e~s~~~~~~~k 75 (92)
T cd06468 9 SDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN----------G---KNYRFTINRLLKKIDPEKSSFKVKTDR 75 (92)
T ss_pred CCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC----------C---cEEEEEehHhhCccCccccEEEEeCCE
Confidence 5677788888887766 99999999999999886421 1 2233344 4889999998888887644
Q ss_pred c
Q psy16269 120 A 120 (186)
Q Consensus 120 ~ 120 (186)
.
T Consensus 76 i 76 (92)
T cd06468 76 I 76 (92)
T ss_pred E
Confidence 3
No 69
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=51.28 E-value=45 Score=23.01 Aligned_cols=58 Identities=9% Similarity=0.068 Sum_probs=42.4
Q ss_pred CCCeEEEEEeC-CCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecC
Q psy16269 44 DNKLLKLRFDV-SQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSS 117 (186)
Q Consensus 44 ~~~kF~V~lDV-~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~ 117 (186)
..+...|.+.+ ..+.+++|+|+...+.|.|..+-++ ..+. -.|...||++.-+-++..
T Consensus 6 t~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~--------------~~l~--~~L~~~I~~~~s~w~~~~ 64 (85)
T cd06467 6 TLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGE--------------PLLD--GELYAKVKVDESTWTLED 64 (85)
T ss_pred eCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCC--------------ceEc--CcccCceeEcCCEEEEeC
Confidence 45678888888 4799999999999999999875210 1111 258888998877666654
No 70
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=50.86 E-value=33 Score=23.51 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=26.2
Q ss_pred CCcEEEEEEcC-ccCCCceEEEEeCCEEEEEEecccc
Q psy16269 147 NKLLKLRFDVS-QYQPEEIVVKTVDNKLLVLSTYTNS 182 (186)
Q Consensus 147 ~~~f~v~lDV~-~F~PeEI~VK~~~~~l~V~gkHee~ 182 (186)
++.|.+.++.. .-.|++.+.++.++.|.|.-+.++.
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~ 77 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEP 77 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCC
Confidence 45677666652 4468888999999998888776654
No 71
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=49.33 E-value=66 Score=22.85 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=41.0
Q ss_pred CCeEEEEEeCCCcCCCceEEEEECCE-EEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCC
Q psy16269 45 NKLLKLRFDVSQYQPEEIVVKTVDNK-LLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSND 119 (186)
Q Consensus 45 ~~kF~V~lDV~~F~PEEI~Vkv~~~~-L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~ 119 (186)
++.-.+..-+.+|-|.+|.|+...+. ....+......... ..+ .++. .-...++.+ +....+|.....+
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~--~d~--ty~~-~s~l~v~~~-~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPN--GDG--TYQL-WVTLEVPPE-DKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEEC--CCC--eEEE-EEEEEECCC-CCCEEEEEEEeCC
Confidence 45689999999999999999998654 33333211100000 011 2222 234455555 7788999997643
No 72
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=47.07 E-value=63 Score=22.28 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=15.9
Q ss_pred cEEEEEEc-CccCCCceEEEEeCCEEEEEEe
Q psy16269 149 LLKLRFDV-SQYQPEEIVVKTVDNKLLVLST 178 (186)
Q Consensus 149 ~f~v~lDV-~~F~PeEI~VK~~~~~l~V~gk 178 (186)
...|.+.+ ..+.+++|.|....+.|.|..+
T Consensus 9 ~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 34445554 2455555555555555555543
No 73
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=44.80 E-value=60 Score=21.46 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCc--cCCCceEEEEeCCEEEEEEec
Q psy16269 146 DNKLLKLRFDVSQ--YQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 146 ~~~~f~v~lDV~~--F~PeEI~VK~~~~~l~V~gkH 179 (186)
..+...|.+.+.. .++++|.|...++.|.|..+.
T Consensus 8 t~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~ 43 (79)
T PF04969_consen 8 TDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKS 43 (79)
T ss_dssp ESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEc
Confidence 3455666777743 458888888888888888663
No 74
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=43.67 E-value=31 Score=23.64 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.6
Q ss_pred CCceEEEEECCEEEEEEEee
Q psy16269 59 PEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 59 PEEI~Vkv~~~~L~V~gkHe 78 (186)
|+.++|.+.++.+.|.|..-
T Consensus 2 P~gV~v~~~~~~i~v~G~~g 21 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG 21 (77)
T ss_dssp STTCEEEEETTEEEEESSSS
T ss_pred CCcEEEEEeCcEEEEECCCE
Confidence 88999999999999998644
No 75
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=42.09 E-value=1.2e+02 Score=21.47 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=44.6
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecC
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSS 117 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~ 117 (186)
.++.-.|.+-++.=.|+.++|+...+.|.|...... ...|.-.+.|-..|||+..+-.+..
T Consensus 8 s~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------------~~~y~~~l~L~~~I~~~~s~~~v~~ 68 (87)
T cd06488 8 TGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------------NKEFQLDIELWGVIDVEKSSVNMLP 68 (87)
T ss_pred CCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------------CceEEEEeeccceEChhHcEEEecC
Confidence 345566666667777999999999999998876541 1346667789999999986655544
No 76
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=41.92 E-value=74 Score=22.47 Aligned_cols=21 Identities=19% Similarity=-0.023 Sum_probs=10.8
Q ss_pred cCCCceEEEEeCC-EEEEEEec
Q psy16269 159 YQPEEIVVKTVDN-KLLVLSTY 179 (186)
Q Consensus 159 F~PeEI~VK~~~~-~l~V~gkH 179 (186)
-.|++=++++.++ .|.|.-..
T Consensus 53 I~~d~Stw~i~~~~~l~i~L~K 74 (85)
T cd06493 53 IDHESSTWIIKENKSLEVSLIK 74 (85)
T ss_pred ccccCcEEEEeCCCEEEEEEEE
Confidence 3556666665433 45555433
No 77
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=39.16 E-value=57 Score=23.38 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCCCCceEEe-cCCCcccccCCCC---CCcccccCCCCceeeecCCCcEEEEEEcCccCCCceEEEEe
Q psy16269 96 NRRQQTIDGNIGSSSNTVTS-SSNDALTAAPRPG---PNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTV 169 (186)
Q Consensus 96 F~R~y~LP~~VD~~~vtstl-s~~~~L~~a~~p~---~~~~~~~~~~p~i~~~~~~~~f~v~lDV~~F~PeEI~VK~~ 169 (186)
-+-.+.||+.+-.-.+++-- +.++.++.+..+. ..+.+-.++-|..- .-+|.+.+.+-|..+.+++++|++.
T Consensus 16 ~~~~~~lPd~it~w~v~a~a~s~~~~~g~~~~~~~~v~~p~~i~~~lP~~l--~~GD~~~i~v~v~N~~~~~~~v~V~ 91 (92)
T PF00207_consen 16 ATFSFTLPDSITSWRVTAFAVSPTGGFGIAEPPEITVFKPFFIQLNLPRSL--RRGDQIQIPVTVFNYTDKDQEVTVT 91 (92)
T ss_dssp EEEEEE-SSSSSEEEEEEEEEETTTEEEEECCEEEEEB-SEEEEEE--SEE--ETTSEEEEEEEEEE-SSS-EEEEEE
T ss_pred EEEEEECCCCccEEEEEEEEECCCCcceEecceEEEEEeeEEEEcCCCcEE--ecCCEEEEEEEEEeCCCCCEEEEEE
Confidence 34678999998877776543 3344554443321 13333333334332 3778999999999999999999874
No 78
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=38.78 E-value=68 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=22.4
Q ss_pred cEEEEEEcC-ccCCCceEEEEeCCEEEEEEeccc
Q psy16269 149 LLKLRFDVS-QYQPEEIVVKTVDNKLLVLSTYTN 181 (186)
Q Consensus 149 ~f~v~lDV~-~F~PeEI~VK~~~~~l~V~gkHee 181 (186)
.|.+.++.. .-.|++-++++.++.|.|.-+..+
T Consensus 43 ~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~ 76 (84)
T cd06489 43 DYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTE 76 (84)
T ss_pred cEEEeeecCceecchhcEEEEeCcEEEEEEEcCC
Confidence 455555441 335788888888888888877654
No 79
>cd07687 IgC_TCR_delta Immunoglobulin Constant domain. IgC_TCR_delta: Constant domain of the delta chain of delta/gamma T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=32.87 E-value=75 Score=23.46 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=40.3
Q ss_pred EEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCc
Q psy16269 50 LRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDA 120 (186)
Q Consensus 50 V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~ 120 (186)
+..=|+.|=|.+|.+.+..++ +++.....--.- +|.- -...|=.--|++.|+|+...+..
T Consensus 10 vACLvkdFYpK~I~i~l~ssk-i~e~~~a~vVs~-----nGky-----saVKlgqy~~~~~VTCtv~h~n~ 69 (80)
T cd07687 10 VACLVKEFYPKSISINLSSSK-IVEEPPAIVVTP-----NGKY-----SAVKLGQYTDLESVTCTVQHNNQ 69 (80)
T ss_pred EEEEEehhcccceEEEecccc-eeccCCceEEcc-----CCcE-----EEEEEEeecCccccEEEEEECCC
Confidence 455588999999999999988 666654432221 2222 23455555678999999887543
No 80
>KOG0710|consensus
Probab=29.12 E-value=85 Score=26.20 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=33.2
Q ss_pred eecCCCcEEEEEEcCccCCCceEEEEeCC-EEEEEEeccc
Q psy16269 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDN-KLLVLSTYTN 181 (186)
Q Consensus 143 ~~~~~~~f~v~lDV~~F~PeEI~VK~~~~-~l~V~gkHee 181 (186)
+....+.+.+.+|+-.-+-++|+|.+.++ .++|.|++..
T Consensus 89 v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~ 128 (196)
T KOG0710|consen 89 VKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKK 128 (196)
T ss_pred cccCCCceEEEeeCCCCCchhceEEeccCcEEEEeccccc
Confidence 34566888889999999999999999988 5999998764
No 81
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=29.07 E-value=2.1e+02 Score=20.12 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCeEEEEEeC-CCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCC
Q psy16269 45 NKLLKLRFDV-SQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSND 119 (186)
Q Consensus 45 ~~kF~V~lDV-~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~ 119 (186)
.+.-.|.+.+ +.-.+++++|+...+.|.|..+.++ . | -.-.|...||++.-+=++..+.
T Consensus 7 ~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~------------~---~-~~g~L~~~I~~d~Stw~i~~~~ 66 (85)
T cd06493 7 EEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQA------------P---L-LEGKLYSSIDHESSTWIIKENK 66 (85)
T ss_pred CCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCC------------e---E-EeCcccCcccccCcEEEEeCCC
Confidence 4566778888 5889999999999999999763110 0 1 1237889999888877775443
No 82
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=26.04 E-value=1.3e+02 Score=19.65 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=18.8
Q ss_pred CcCCCceEEEEECCEEEEEEEe
Q psy16269 56 QYQPEEIVVKTVDNKLLVSTLT 77 (186)
Q Consensus 56 ~F~PEEI~Vkv~~~~L~V~gkH 77 (186)
.|....|.|.+.++.+.+.|.=
T Consensus 13 ~~~~~~i~v~v~~g~v~L~G~v 34 (64)
T PF04972_consen 13 WLPDSNISVSVENGVVTLSGEV 34 (64)
T ss_dssp CTT-TTEEEEEECTEEEEEEEE
T ss_pred ccCCCeEEEEEECCEEEEEeeC
Confidence 5777899999999999999974
No 83
>PRK09774 fec operon regulator FecR; Reviewed
Probab=25.97 E-value=2.8e+02 Score=24.48 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=19.0
Q ss_pred EEcCccCCCceEEEEeCCEEEEEEec
Q psy16269 154 FDVSQYQPEEIVVKTVDNKLLVLSTY 179 (186)
Q Consensus 154 lDV~~F~PeEI~VK~~~~~l~V~gkH 179 (186)
++|..+ +++..|.+..+.+.|...+
T Consensus 184 F~V~~~-~~~~~V~V~eG~V~v~~~~ 208 (319)
T PRK09774 184 FTVRQQ-DNFTQLAVQQHAVEVLLAS 208 (319)
T ss_pred EEEEEc-CCCceEEEEEEEEEEEECC
Confidence 466654 4778999999999997644
No 84
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=25.60 E-value=80 Score=23.15 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCCceEEEEeCCEEEEEEecccccccC
Q psy16269 160 QPEEIVVKTVDNKLLVLSTYTNSYLLG 186 (186)
Q Consensus 160 ~PeEI~VK~~~~~l~V~gkHee~~~~~ 186 (186)
.|-|+.||..++.++..+--++-+|+|
T Consensus 13 t~~Ev~vrL~~~~vtLqA~~D~I~li~ 39 (75)
T PF11869_consen 13 TPHEVVVRLNGSHVTLQAQVDDITLIG 39 (75)
T ss_pred cceEEEEEECCCcEEEEEeeeehhhcC
Confidence 588999999988888888888777765
No 85
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=24.52 E-value=3.1e+02 Score=20.61 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=43.1
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecC
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSS 117 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~ 117 (186)
..+..-|++++++ +++++|++..+.|.+.|+-. + | .++.=.+.|=..|+++.-+...+.
T Consensus 9 r~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~---~-------g---~~y~~~l~l~~~I~pe~Sk~~v~~ 67 (106)
T cd00237 9 RRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG---D-------N---VKIYNEIELYDRVDPNDSKHKRTD 67 (106)
T ss_pred CCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC---C-------C---cEEEEEEEeecccCcccCeEEeCC
Confidence 3456778889987 89999999999999998431 1 1 123345678888999877666654
No 86
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=23.86 E-value=2.8e+02 Score=19.93 Aligned_cols=70 Identities=14% Similarity=-0.018 Sum_probs=38.1
Q ss_pred CCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCC
Q psy16269 45 NKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSND 119 (186)
Q Consensus 45 ~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~ 119 (186)
++.=.|..-|.+|-|.+|+|...-+.-.+.+..+.-.-..+ ..+-|. -+ ....++.+ +-...+|.....+
T Consensus 14 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~-~dgTy~--~~-s~L~~~~~-~~~~ysC~V~H~~ 83 (94)
T cd05766 14 SHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPN-GDWTYQ--IL-VMLETTPS-RGDTYTCVVEHSS 83 (94)
T ss_pred CCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEEC-CCCcEE--EE-EEEEEcCC-CCCEEEEEEEeCC
Confidence 45568899999999999999997433344332211110000 111122 22 22344444 4566788887643
No 87
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=23.55 E-value=79 Score=21.76 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCeEEEEEeCCCcCCCceEEEEE-CCEE
Q psy16269 45 NKLLKLRFDVSQYQPEEIVVKTV-DNKL 71 (186)
Q Consensus 45 ~~kF~V~lDV~~F~PEEI~Vkv~-~~~L 71 (186)
++.-.|..-|.+|-|++|+|+.. ++..
T Consensus 8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~ 35 (83)
T PF07654_consen 8 GGSVTLTCLVSGFYPKDITVTWLKNGKE 35 (83)
T ss_dssp TSEEEEEEEEEEEBSSTEEEEEEETTEE
T ss_pred CCCEEEEEEEEEEECCCcEEEEEeccce
Confidence 56778888999999999999996 4443
No 88
>PF14913 DPCD: DPCD protein family
Probab=20.69 E-value=5.3e+02 Score=22.07 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=42.2
Q ss_pred cCCCCceEeeCCCCeEEEEEeCCCcCCCceEEEEEC--CEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCC
Q psy16269 33 NISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVD--NKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDG 104 (186)
Q Consensus 33 ~~~~p~i~~~~~~~kF~V~lDV~~F~PEEI~Vkv~~--~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~ 104 (186)
+...|++.-.+.+..|+-++===.|..+--+|.+.+ ++|+|.-. .+-|.++|.+|+
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTt----------------NKKYyKk~~IPD 140 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTT----------------NKKYYKKFSIPD 140 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCCCCccceEEEEcCCCcEEEEECc----------------CccceeEecCCc
Confidence 444777777888999998887777888888888885 56888543 244568899997
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=20.66 E-value=3.4e+02 Score=24.32 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=48.4
Q ss_pred CCCeEEEEEeCCCcCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEecCCCc
Q psy16269 44 DNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDA 120 (186)
Q Consensus 44 ~~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls~~~~ 120 (186)
....-.|.|=+++..++++.|....+.|.|...... + ..|.-.+.|=..|+|+..+.++....+
T Consensus 164 s~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~----------~---~~y~~~~~L~~~I~p~~s~~~v~~~Ki 227 (356)
T PLN03088 164 KPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG----------E---DAYHLQPRLFGKIIPDKCKYEVLSTKI 227 (356)
T ss_pred cCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC----------C---cceeecccccccccccccEEEEecceE
Confidence 466677788888999999999999999999876531 1 224445789999999988777776543
No 90
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=20.62 E-value=2e+02 Score=20.67 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=32.5
Q ss_pred EEEEEeCCC---cCCCceEEEEECCEEEEEEEeeeecccCCCCCCceeeeeEEEEEecCCCCCCCCceEEec
Q psy16269 48 LKLRFDVSQ---YQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSS 116 (186)
Q Consensus 48 F~V~lDV~~---F~PEEI~Vkv~~~~L~V~gkHeek~d~~~~~~~g~vsReF~R~y~LP~~VD~~~vtstls 116 (186)
-.|.+.+.. .++.+|+|++..+.|.|.-+.+.- . =.-.|...||++.-+=++-
T Consensus 10 v~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~----------~------i~G~L~~~V~~des~Wtle 65 (87)
T cd06492 10 VELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPP----------I------IDGELYNEVKVEESSWLIE 65 (87)
T ss_pred EEEEEECCCCCCccceEEEEEEecCEEEEEECCCce----------E------EeCcccCcccccccEEEEe
Confidence 455566532 788888888888888885542100 1 1125777888776555554
No 91
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.62 E-value=1.2e+02 Score=23.52 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.0
Q ss_pred CCeEEEEEeCCCcCCCceEEEEECCEEEEEEEee
Q psy16269 45 NKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTT 78 (186)
Q Consensus 45 ~~kF~V~lDV~~F~PEEI~Vkv~~~~L~V~gkHe 78 (186)
..+-+..+|+++.+|++|.+.-.++.|.|.--+-
T Consensus 45 ~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~ 78 (157)
T PF14014_consen 45 PGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPP 78 (157)
T ss_pred EEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCc
Confidence 4456778999999999999988999999875544
Done!