RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16269
(186 letters)
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 51.4 bits (122), Expect = 3e-08
Identities = 31/173 (17%), Positives = 60/173 (34%), Gaps = 23/173 (13%)
Query: 23 PRPGPNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQ- 81
+PG +L + + +DG K+ F+V ++ EEI +K NKL+V +
Sbjct: 92 TQPGELDFLKDAYE--VGKDGRLHF-KVYFNVKNFKAEEITIKADKNKLVVRAQKSVACG 148
Query: 82 --------IRCEPIPARRDRSQNRRQQTIDG----------NIGSSSNTVTSSSNDALTA 123
R P+P DR+ + T D + +
Sbjct: 149 DAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEPNYKAIKLSPEKGLAIQPS 208
Query: 124 APRPGPNTYLDNISSPLIQEDGDNKLLKLRFDV-SQYQPEEIVVKTVDNKLLV 175
+ + ++ + +K + L V + P+++ V NK+ V
Sbjct: 209 EVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVWAKGNKVYV 261
Score = 26.3 bits (57), Expect = 5.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 53 DVSQYQPEEIVVKTVDNKLLVS 74
+ P+++ V NK+ V
Sbjct: 241 VDPHFAPKDVKVWAKGNKVYVH 262
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-06
Identities = 31/168 (18%), Positives = 54/168 (32%), Gaps = 62/168 (36%)
Query: 31 LDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKL------LVSTLTTKTQIRC 84
+D+I ++ +D + L+L F + EE+V K V+ L L+S + T+ +
Sbjct: 51 IDHI---IMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 85 EPIP---ARRDRSQNRRQQTIDGNIGSSSNTVTSSSNDALTAAPRPGPNTYLDNISSPLI 141
+RDR N Q N+ R
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNV------------------SRL-------------- 134
Query: 142 QEDGDNKLLKLRFDVSQYQPEEIVV--------KTVDNKLLVLSTYTN 181
LKLR + + +P + V+ KT + L +
Sbjct: 135 -----QPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLS 173
Score = 41.4 bits (96), Expect = 1e-04
Identities = 39/200 (19%), Positives = 64/200 (32%), Gaps = 49/200 (24%)
Query: 3 ALNSSSNT-VTS---SSNDALTAAPRPGPNTYLDNISSPLIQEDGDNKLLK-LRFDVSQY 57
A N S +T+ D L+AA + LD+ S L ++ + LLK L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 58 QPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRRQQTIDGNIGSSSNTVTSSS 117
P E V+ T N +S + IR N + D T+ SS
Sbjct: 319 -PRE-VLTT--NPRRLSII--AESIRDGL-----ATWDNWKHVNCD-----KLTTIIESS 362
Query: 118 NDALTAAPRPGPNT----YLD--------NISSPLIQEDGDNKLLKLRFDVSQYQPEEIV 165
+ L P + +I + L+ + FDV + +V
Sbjct: 363 LNVLE------PAEYRKMFDRLSVFPPSAHIPTILLS--------LIWFDVIKSDVMVVV 408
Query: 166 VKTVDNKLLVLSTYTNSYLL 185
K L+ ++ +
Sbjct: 409 NKLHKYSLVEKQPKESTISI 428
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 42.8 bits (101), Expect = 3e-06
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 39 IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVSTLTTKTQIRCEPIPARRDRSQNRR 98
+ D + DV + PEEI VK V + + V + + R + + R
Sbjct: 6 VPTDPGY--FSVLLDVKHFSPEEISVKVVGDHVEVH---ARHEERPD--EHGFIAREFHR 58
Query: 99 QQTIDGNIGSSSNTVTSSSNDALT-AAPRPGPN 130
+ + + ++ T S L+ A
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQ 91
Score = 40.9 bits (96), Expect = 2e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 141 IQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLV 175
+ D + DV + PEEI VK V + + V
Sbjct: 6 VPTDPGY--FSVLLDVKHFSPEEISVKVVGDHVEV 38
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 40.5 bits (95), Expect = 2e-05
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 41 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVS 74
++ + DV + PEE+ VK + + + V
Sbjct: 2 AMEKDRF-SVNLDVKHFSPEELKVKVLGDVIEVH 34
Score = 39.3 bits (92), Expect = 5e-05
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLV 175
++ + DV + PEE+ VK + + + V
Sbjct: 2 AMEKDRF-SVNLDVKHFSPEELKVKVLGDVIEV 33
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 40.4 bits (95), Expect = 2e-05
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 41 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVS 74
++ ++ DV+ + P+E+ VKT D + ++
Sbjct: 3 SHTADRW-RVSLDVNHFAPDELTVKTKDGVVEIT 35
Score = 39.6 bits (93), Expect = 5e-05
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 143 EDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLV 175
++ ++ DV+ + P+E+ VKT D + +
Sbjct: 3 SHTADRW-RVSLDVNHFAPDELTVKTKDGVVEI 34
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 39.1 bits (91), Expect = 1e-04
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 36 SPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVS 74
S + + D + DV + PE++ VK ++ + +
Sbjct: 2 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIH 40
Score = 37.9 bits (88), Expect = 2e-04
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 138 SPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLV 175
S + + D + DV + PE++ VK ++ + +
Sbjct: 2 SGISEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEI 39
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 39.5 bits (92), Expect = 1e-04
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 24 RPGPNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLVS 74
P + L + + + DV + PEE+ VK + + + V
Sbjct: 51 PPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVH 101
Score = 38.8 bits (90), Expect = 3e-04
Identities = 10/50 (20%), Positives = 19/50 (38%)
Query: 126 RPGPNTYLDNISSPLIQEDGDNKLLKLRFDVSQYQPEEIVVKTVDNKLLV 175
P + L + + + DV + PEE+ VK + + + V
Sbjct: 51 PPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEV 100
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide,
oligosaccharide-binding fold, OB-fold, beta-barrel, RNA
binding protein; 2.50A {Aquifex aeolicus} SCOP:
b.40.4.4
Length = 111
Score = 27.9 bits (63), Expect = 0.84
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 43 GDNKLLKLRFDV------------SQYQPEEIVVKTV 67
G KLLKL + Y PEE+V K +
Sbjct: 30 GSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKKI 66
Score = 27.9 bits (63), Expect = 0.84
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 12/37 (32%)
Query: 145 GDNKLLKLRFDV------------SQYQPEEIVVKTV 169
G KLLKL + Y PEE+V K +
Sbjct: 30 GSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKKI 66
>2cwp_A Metrs related protein; structural GEN riken structural
genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus
horikoshii}
Length = 112
Score = 27.6 bits (62), Expect = 1.1
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 43 GDNKLLKLRFDV------------SQYQPEEIVVKTV 67
KL+KL D Q PEE+ K
Sbjct: 30 RTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKF 66
Score = 27.6 bits (62), Expect = 1.1
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 12/37 (32%)
Query: 145 GDNKLLKLRFDV------------SQYQPEEIVVKTV 169
KL+KL D Q PEE+ K
Sbjct: 30 RTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKF 66
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta
barrel, dimerization domain, ligase; 2.01A {Pyrococcus
abyssi} SCOP: b.40.4.4
Length = 107
Score = 26.4 bits (59), Expect = 3.1
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 43 GDNKLLKLRFDV------------SQYQPEEIVVKTV 67
+KL ++ D+ Y+PEE++ + V
Sbjct: 26 NADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYV 62
Score = 26.4 bits (59), Expect = 3.1
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 12/37 (32%)
Query: 145 GDNKLLKLRFDV------------SQYQPEEIVVKTV 169
+KL ++ D+ Y+PEE++ + V
Sbjct: 26 NADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYV 62
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural
genomics/proteomics initiative RSGI, structural
genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2
PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Length = 157
Score = 26.1 bits (58), Expect = 6.1
Identities = 5/17 (29%), Positives = 6/17 (35%), Gaps = 3/17 (17%)
Query: 49 KLRFDVSQYQP---EEI 62
K V + EEI
Sbjct: 39 KGVLIVKFDRKPSDEEI 55
Score = 26.1 bits (58), Expect = 6.1
Identities = 5/17 (29%), Positives = 6/17 (35%), Gaps = 3/17 (17%)
Query: 151 KLRFDVSQYQP---EEI 164
K V + EEI
Sbjct: 39 KGVLIVKFDRKPSDEEI 55
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide
binding fold, OB fold, beta- barrel; 1.87A {Escherichia
coli} SCOP: b.40.4.4 PDB: 3ers_X
Length = 111
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 45 NKLLKLRFDV------------SQYQPEEIVVKTV 67
+KL ++ DV Y EE++ KTV
Sbjct: 29 DKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTV 63
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 12/35 (34%)
Query: 147 NKLLKLRFDV------------SQYQPEEIVVKTV 169
+KL ++ DV Y EE++ KTV
Sbjct: 29 DKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTV 63
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 26.5 bits (59), Expect = 6.3
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 3/17 (17%)
Query: 49 KLRFDVSQYQP---EEI 62
K R DV+ ++ EEI
Sbjct: 629 KARLDVTHFRRPSEEEI 645
Score = 26.5 bits (59), Expect = 6.3
Identities = 7/17 (41%), Positives = 10/17 (58%), Gaps = 3/17 (17%)
Query: 151 KLRFDVSQYQP---EEI 164
K R DV+ ++ EEI
Sbjct: 629 KARLDVTHFRRPSEEEI 645
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.344
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,528,791
Number of extensions: 135079
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 30
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (24.6 bits)