RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16269
         (186 letters)



>d1clca1 a.102.1.2 (A:135-575) CelD cellulase, C-terminal domain
           {Clostridium thermocellum [TaxId: 1515]}
          Length = 441

 Score = 27.3 bits (60), Expect = 1.2
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 107 GSSSNTVTSSSNDALTAAPRPGPNTYLDNISS 138
            S ++ +       L     PGP  ++D   S
Sbjct: 385 RSGADGIWEPWPGYLVGGGWPGPKDWVDIQDS 416



 Score = 26.9 bits (59), Expect = 1.6
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 6   SSSNTVTSSSNDALTAAPRPGPNTYLDNISS 36
           S ++ +       L     PGP  ++D   S
Sbjct: 386 SGADGIWEPWPGYLVGGGWPGPKDWVDIQDS 416


>d1gpma3 d.52.2.1 (A:405-525) GMP synthetase C-terminal
          dimerisation domain {Escherichia coli [TaxId: 562]}
          Length = 121

 Score = 24.7 bits (54), Expect = 4.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 14 SSNDALTAAPRPGPNTYLDNISSPLIQE 41
           + D +TA     P  +L  +S+ +I E
Sbjct: 72 ETIDFMTAHWAHLPYDFLGRVSNRIINE 99



 Score = 24.7 bits (54), Expect = 4.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 116 SSNDALTAAPRPGPNTYLDNISSPLIQE 143
            + D +TA     P  +L  +S+ +I E
Sbjct: 72  ETIDFMTAHWAHLPYDFLGRVSNRIINE 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.127    0.344 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,013
Number of extensions: 24875
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 6
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.2 bits)