BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16273
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L1G|A Chain A, Human Alphab Crystallin
Length = 96
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SSLS DGVLTV P + PE+
Sbjct: 32 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 91
Query: 222 LIPI 225
IPI
Sbjct: 92 TIPI 95
>pdb|2KLR|A Chain A, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2KLR|B Chain B, Solid-State Nmr Structure Of The Alpha-Crystallin Domain
In Alphab- Crystallin Oligomers
pdb|2YGD|A Chain A, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|B Chain B, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|C Chain C, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|D Chain D, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|E Chain E, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|F Chain F, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|G Chain G, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|H Chain H, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|I Chain I, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|J Chain J, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|K Chain K, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|L Chain L, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|M Chain M, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|N Chain N, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|O Chain O, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|P Chain P, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|Q Chain Q, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|R Chain R, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|S Chain S, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|T Chain T, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|U Chain U, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|V Chain V, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|W Chain W, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
pdb|2YGD|X Chain X, Molecular Architectures Of The 24meric Eye Lens Chaperone
Alphab-Crystallin Elucidated By A Triple Hybrid Approach
Length = 175
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SSLS DGVLTV P + PE+
Sbjct: 98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157
Query: 222 LIPI 225
IPI
Sbjct: 158 TIPI 161
>pdb|2WJ7|A Chain A, Human Alphab Crystallin
pdb|2WJ7|B Chain B, Human Alphab Crystallin
pdb|2WJ7|C Chain C, Human Alphab Crystallin
pdb|2WJ7|D Chain D, Human Alphab Crystallin
pdb|2WJ7|E Chain E, Human Alphab Crystallin
Length = 94
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SSLS DGVLTV P + PE+
Sbjct: 35 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 94
>pdb|2Y1Y|A Chain A, Human Alphab Crystallin Acd(Residues 71-157)
Length = 90
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SS S DGVLTV P + PE+
Sbjct: 31 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 90
>pdb|2Y22|A Chain A, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|B Chain B, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|C Chain C, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|D Chain D, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|E Chain E, Human Alphab-Crystallin Domain (Residues 67-157)
pdb|2Y22|F Chain F, Human Alphab-Crystallin Domain (Residues 67-157)
Length = 94
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SS S DGVLTV P + PE+
Sbjct: 35 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSXSSDGVLTVNGPRKQVSGPER 94
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 211
V VHA+HEE+ D + RE++R + LP G +P ++ S+LS +GVL+++A
Sbjct: 36 VEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQA 85
>pdb|2Y1Z|A Chain A, Human Alphab Crystallin Acd R120g
pdb|2Y1Z|B Chain B, Human Alphab Crystallin Acd R120g
Length = 94
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++ ++ +P +P +I SS+S DGVLTV P + PE+
Sbjct: 35 IEVHGKHEERQDEHGFISREFHGKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 94
>pdb|3Q9P|A Chain A, Hspb1 Fragment
pdb|3Q9Q|A Chain A, Hspb1 Fragment Second Crystal Form
pdb|3Q9Q|B Chain B, Hspb1 Fragment Second Crystal Form
Length = 85
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214
V + KH + D + R + R++ LP G +P + SSLS +G LTVEAP+P
Sbjct: 32 VEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA---LG 217
V +H KH E+ D + RE++R + LP + ++ SLS DG+LT P +P+ G
Sbjct: 37 VEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAG 96
Query: 218 APEKLIPIA 226
E+ IP++
Sbjct: 97 HSERAIPVS 105
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-LPA---LG 217
V +H KH E+ D + RE++R + LP + ++ SLS DG+LT P +P+ G
Sbjct: 34 VEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAG 93
Query: 218 APEKLIPIA 226
E+ IP++
Sbjct: 94 HSERAIPVS 102
>pdb|3N3E|A Chain A, Zebrafish Alphaa Crystallin
pdb|3N3E|B Chain B, Zebrafish Alphaa Crystallin
Length = 106
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 150 WSAAEYSFK-SHTPVTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVL 207
+S E S K + V + KH E+ D + RE++R + LP + +I +LS DG+L
Sbjct: 21 FSPDELSVKVTDDYVEIQGKHGERQDDHGYISREFHRRYRLPSNVDQSAITCTLSADGLL 80
Query: 208 TVEAPLPA---LGAPEKLIPI 225
T+ P + G ++ IP+
Sbjct: 81 TLCGPKTSGIDAGRGDRTIPV 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,220,569
Number of Sequences: 62578
Number of extensions: 234514
Number of successful extensions: 615
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 597
Number of HSP's gapped (non-prelim): 11
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)