Query psy16273
Match_columns 227
No_of_seqs 217 out of 1369
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:12:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3591|consensus 99.9 4.6E-25 9.9E-30 187.1 13.3 90 138-227 71-163 (173)
2 PRK11597 heat shock chaperone 99.9 1.6E-24 3.4E-29 178.7 12.2 123 89-227 6-136 (142)
3 PRK10743 heat shock protein Ib 99.9 2.5E-24 5.4E-29 176.3 12.3 124 89-226 6-137 (137)
4 COG0071 IbpA Molecular chapero 99.9 2.1E-23 4.6E-28 170.8 12.1 118 96-226 19-146 (146)
5 cd06476 ACD_HspB2_like Alpha c 99.9 3.4E-23 7.5E-28 156.2 10.5 76 138-213 6-83 (83)
6 cd06497 ACD_alphaA-crystallin_ 99.9 4.2E-23 9.1E-28 156.3 9.9 76 138-213 9-86 (86)
7 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 6.1E-23 1.3E-27 154.3 10.1 76 138-213 6-83 (83)
8 cd06498 ACD_alphaB-crystallin_ 99.9 8E-23 1.7E-27 154.3 10.3 77 138-214 6-84 (84)
9 cd06480 ACD_HspB8_like Alpha-c 99.9 1.9E-22 4.2E-27 155.1 10.3 76 138-213 14-91 (91)
10 cd06477 ACD_HspB3_Like Alpha c 99.9 1.2E-21 2.5E-26 148.2 10.5 75 138-212 6-82 (83)
11 cd06479 ACD_HspB7_like Alpha c 99.8 8.9E-21 1.9E-25 142.7 9.9 74 138-213 7-81 (81)
12 cd06481 ACD_HspB9_like Alpha c 99.8 9.2E-21 2E-25 143.8 10.0 76 138-213 6-87 (87)
13 cd06475 ACD_HspB1_like Alpha c 99.8 8.6E-21 1.9E-25 143.7 9.4 76 138-213 9-86 (86)
14 PF00011 HSP20: Hsp20/alpha cr 99.8 7.2E-20 1.6E-24 139.6 12.7 88 138-226 6-102 (102)
15 cd06526 metazoan_ACD Alpha-cry 99.8 3.5E-20 7.5E-25 138.3 9.9 75 139-213 7-83 (83)
16 cd06482 ACD_HspB10 Alpha cryst 99.8 2.3E-19 5.1E-24 136.8 10.1 75 138-212 7-86 (87)
17 cd06472 ACD_ScHsp26_like Alpha 99.8 1.7E-18 3.6E-23 131.3 8.6 75 138-213 8-92 (92)
18 cd06470 ACD_IbpA-B_like Alpha- 99.7 1.6E-17 3.4E-22 126.1 10.5 72 139-213 11-90 (90)
19 cd06464 ACD_sHsps-like Alpha-c 99.7 2.8E-17 6.1E-22 120.2 8.6 74 139-213 7-88 (88)
20 cd06471 ACD_LpsHSP_like Group 99.7 4.1E-17 8.9E-22 123.4 8.7 73 139-213 10-93 (93)
21 cd00298 ACD_sHsps_p23-like Thi 99.4 1.1E-12 2.5E-17 91.7 9.1 74 139-213 6-80 (80)
22 KOG0710|consensus 99.4 1.8E-12 3.9E-17 111.8 8.2 87 139-226 94-195 (196)
23 cd06469 p23_DYX1C1_like p23_li 98.9 6.7E-09 1.5E-13 75.4 8.6 65 139-216 6-71 (78)
24 cd06463 p23_like Proteins cont 98.5 6.1E-07 1.3E-11 64.2 8.7 70 139-216 6-76 (84)
25 cd06466 p23_CS_SGT1_like p23_l 98.0 3.6E-05 7.9E-10 56.2 8.2 70 139-216 7-77 (84)
26 PF05455 GvpH: GvpH; InterPro 97.9 4.9E-05 1.1E-09 65.3 8.2 66 140-216 103-170 (177)
27 PF00525 Crystallin: Alpha cry 97.4 5E-05 1.1E-09 54.4 0.8 35 70-107 8-42 (59)
28 PF08190 PIH1: pre-RNA process 97.1 0.0028 6E-08 57.2 9.0 66 137-212 259-327 (328)
29 PF04969 CS: CS domain; Inter 96.9 0.015 3.2E-07 41.1 9.4 67 139-213 10-79 (79)
30 cd06465 p23_hB-ind1_like p23_l 96.4 0.037 8E-07 42.8 9.2 68 139-215 10-78 (108)
31 cd06489 p23_CS_hSgt1_like p23_ 96.1 0.052 1.1E-06 40.0 8.4 70 139-216 7-77 (84)
32 cd06467 p23_NUDC_like p23_like 95.9 0.047 1E-06 39.8 7.4 67 139-216 8-77 (85)
33 cd06468 p23_CacyBP p23_like do 95.1 0.27 5.8E-06 36.5 9.2 70 139-216 11-85 (92)
34 cd06493 p23_NUDCD1_like p23_NU 94.3 0.32 7E-06 36.0 7.7 67 139-216 8-77 (85)
35 cd06488 p23_melusin_like p23_l 94.0 0.67 1.5E-05 34.6 9.0 70 139-216 10-80 (87)
36 cd06494 p23_NUDCD2_like p23-li 88.2 4.1 8.9E-05 31.3 8.0 66 139-216 15-83 (93)
37 cd00237 p23 p23 binds heat sho 87.2 8.2 0.00018 30.3 9.4 67 139-215 11-78 (106)
38 cd06492 p23_mNUDC_like p23-lik 81.2 14 0.00031 27.7 8.1 67 139-216 8-79 (87)
39 PLN03088 SGT1, suppressor of 76.8 13 0.00028 34.6 8.0 70 139-216 166-236 (356)
40 cd06482 ACD_HspB10 Alpha cryst 67.2 8.5 0.00019 29.2 3.7 35 180-216 8-42 (87)
41 cd06495 p23_NUDCD3_like p23-li 63.6 58 0.0013 25.4 7.9 70 139-216 14-87 (102)
42 cd06478 ACD_HspB4-5-6 Alpha-cr 62.1 15 0.00032 27.2 4.1 34 180-215 7-40 (83)
43 cd06470 ACD_IbpA-B_like Alpha- 60.7 15 0.00032 27.4 4.0 35 180-216 11-45 (90)
44 PRK10743 heat shock protein Ib 59.2 19 0.00041 29.5 4.6 32 182-215 47-78 (137)
45 PF13349 DUF4097: Domain of un 57.7 60 0.0013 25.8 7.3 58 154-212 86-149 (166)
46 cd06526 metazoan_ACD Alpha-cry 57.6 16 0.00035 26.6 3.7 35 180-216 7-41 (83)
47 cd06479 ACD_HspB7_like Alpha c 57.5 17 0.00038 27.1 3.8 34 180-215 8-41 (81)
48 cd06471 ACD_LpsHSP_like Group 56.6 17 0.00038 26.8 3.7 34 180-215 10-43 (93)
49 PRK11597 heat shock chaperone 48.4 34 0.00075 28.3 4.6 33 181-215 44-76 (142)
50 PF07873 YabP: YabP family; I 47.0 17 0.00036 26.0 2.2 24 146-169 19-43 (66)
51 PF00347 Ribosomal_L6: Ribosom 44.2 33 0.00072 24.3 3.4 45 152-212 2-47 (77)
52 PF12624 Chorein_N: N-terminal 43.4 22 0.00048 27.8 2.6 22 147-168 17-39 (118)
53 PF00011 HSP20: Hsp20/alpha cr 42.5 46 0.00099 24.7 4.1 33 180-214 7-39 (102)
54 PF04972 BON: BON domain; Int 42.5 39 0.00085 23.0 3.5 22 149-170 13-35 (64)
55 cd06476 ACD_HspB2_like Alpha c 36.7 56 0.0012 24.3 3.7 33 181-215 8-40 (83)
56 TIGR02856 spore_yqfC sporulati 36.6 27 0.00059 26.4 2.0 24 146-169 37-61 (85)
57 cd06477 ACD_HspB3_Like Alpha c 35.5 58 0.0013 24.4 3.7 33 181-215 8-40 (83)
58 TIGR02892 spore_yabP sporulati 35.3 26 0.00055 26.8 1.7 24 146-169 18-42 (85)
59 cd06464 ACD_sHsps-like Alpha-c 34.8 61 0.0013 22.7 3.6 35 180-216 7-41 (88)
60 cd06497 ACD_alphaA-crystallin_ 34.3 67 0.0015 23.9 3.9 34 180-215 10-43 (86)
61 cd06490 p23_NCB5OR p23_like do 33.0 2E+02 0.0044 21.2 9.9 69 139-216 8-80 (87)
62 KOG3591|consensus 30.9 48 0.001 28.3 2.9 25 148-172 125-151 (173)
63 CHL00140 rpl6 ribosomal protei 29.3 1.5E+02 0.0032 25.3 5.6 43 152-212 12-55 (178)
64 PF08308 PEGA: PEGA domain; I 28.5 1.4E+02 0.0029 20.8 4.5 30 139-168 35-66 (71)
65 KOG3413|consensus 28.5 24 0.00053 29.9 0.6 25 188-213 65-89 (156)
66 cd06472 ACD_ScHsp26_like Alpha 28.4 1.4E+02 0.0029 22.1 4.7 35 180-215 9-43 (92)
67 PRK05518 rpl6p 50S ribosomal p 27.5 1.9E+02 0.0042 24.8 6.0 44 152-212 13-57 (180)
68 PF08845 SymE_toxin: Toxin Sym 27.1 50 0.0011 23.3 2.0 23 145-167 33-57 (57)
69 cd06475 ACD_HspB1_like Alpha c 26.6 1.2E+02 0.0027 22.5 4.1 34 180-215 10-43 (86)
70 cd06469 p23_DYX1C1_like p23_li 24.8 1.7E+02 0.0037 20.4 4.5 33 139-171 36-70 (78)
71 PTZ00027 60S ribosomal protein 24.2 2.2E+02 0.0049 24.6 5.9 46 152-212 13-59 (190)
72 cd06481 ACD_HspB9_like Alpha c 22.9 1.4E+02 0.0029 22.3 3.8 34 180-215 7-40 (87)
73 TIGR02761 TraE_TIGR type IV co 21.0 2.8E+02 0.0061 23.5 5.8 22 149-170 127-149 (181)
74 PRK02913 hypothetical protein; 20.7 67 0.0015 27.2 1.8 16 199-214 112-127 (150)
75 KOG3158|consensus 20.1 4.1E+02 0.009 23.2 6.5 67 139-215 17-84 (180)
76 PRK13726 conjugal transfer pil 20.1 3.3E+02 0.0072 23.5 6.1 57 149-216 127-184 (188)
No 1
>KOG3591|consensus
Probab=99.93 E-value=4.6e-25 Score=187.13 Aligned_cols=90 Identities=38% Similarity=0.600 Sum_probs=83.8
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCC-eeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~-~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
.++|+|.|||.+|+|+||+|++ |+.|.|+|+|+++++++ ++.|+|.|+|.||++||+++|+++||.||+|+|++|+..
T Consensus 71 ~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 71 KDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred CCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 4889999999999999999999 99999999999997765 999999999999999999999999999999999999988
Q ss_pred CCC-CCeeeccCC
Q psy16273 216 LGA-PEKLIPIAH 227 (227)
Q Consensus 216 ~e~-~~R~I~I~~ 227 (227)
... .+|.|+|++
T Consensus 151 ~~~~~er~ipI~~ 163 (173)
T KOG3591|consen 151 PKQDNERSIPIEQ 163 (173)
T ss_pred CcCccceEEeEee
Confidence 642 599999974
No 2
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.92 E-value=1.6e-24 Score=178.71 Aligned_cols=123 Identities=11% Similarity=0.090 Sum_probs=99.8
Q ss_pred cccccCCCCChhhhhhhhhhhcccCCCCCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEE
Q psy16273 89 LITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHA 167 (227)
Q Consensus 89 ~dp~Fgs~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~G 167 (227)
|+|+|++..++|++++.+..... ...+||+++.+.. .+.|.|.+|||||+++||+|.+ +|.|+|+|
T Consensus 6 ~~~~~~~~~~~d~l~~~~~~~~~------~~~~P~vdI~e~~-------~~~y~v~adlPGv~kedi~V~v~~~~LtI~g 72 (142)
T PRK11597 6 LSPLLRQWIGFDKLANALQNAGE------SQSFPPYNIEKSD-------DNHYRITLALAGFRQEDLDIQLEGTRLTVKG 72 (142)
T ss_pred cchhhcccccHHHHHHHhcccCc------cCCCCcEEEEEcC-------CCEEEEEEEeCCCCHHHeEEEEECCEEEEEE
Confidence 68999999999999987764221 2457888876432 1679999999999999999999 99999999
Q ss_pred EEeeecCC-Cee-----eeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCC-CCCeeeccCC
Q psy16273 168 KHEEKSDS-KSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPIAH 227 (227)
Q Consensus 168 k~e~~~d~-~~~-----~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e-~~~R~I~I~~ 227 (227)
++....++ +|. +++|.|+|.||++||.+ +|+| +||||+|++||..++ .++|+|+|++
T Consensus 73 e~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~-~nGVL~I~lPK~~~~~~~~rkI~I~~ 136 (142)
T PRK11597 73 TPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF-VNGLLHIDLIRNEPEAIAPQRIAISE 136 (142)
T ss_pred EEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE-cCCEEEEEEeccCccccCCcEEEECC
Confidence 87543332 342 45799999999999998 6999 999999999997543 6899999974
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.91 E-value=2.5e-24 Score=176.30 Aligned_cols=124 Identities=15% Similarity=0.174 Sum_probs=99.7
Q ss_pred cccccCCCCChhhhhhhhhhhcccCCCCCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEE
Q psy16273 89 LITHYGSTFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHA 167 (227)
Q Consensus 89 ~dp~Fgs~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~G 167 (227)
|.|++++++++|++++.+....+. +...|||+++...+ .+.|.|.++||||+++||+|++ +|.|+|+|
T Consensus 6 ~~~~~~~~~~~d~lf~~~~~~~~~----~~~~~p~~di~ee~-------~~~~~v~aelPGv~kedi~V~v~~~~LtI~g 74 (137)
T PRK10743 6 LSPLYRSAIGFDRLFNLLENNQSQ----SNGGYPPYNVELVD-------ENHYRIAIAVAGFAESELEITAQDNLLVVKG 74 (137)
T ss_pred cChhhhcccCHHHHhhhhhhhhhc----ccCCCCcEEEEEcC-------CCEEEEEEECCCCCHHHeEEEEECCEEEEEE
Confidence 778899999999999877653321 23346888776322 1789999999999999999999 99999999
Q ss_pred EEeeecCC-Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCC-CCCeeeccC
Q psy16273 168 KHEEKSDS-KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPIA 226 (227)
Q Consensus 168 k~e~~~d~-~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e-~~~R~I~I~ 226 (227)
++..+.++ +| .+++|.|+|.||++||.+ +|+| +||||+|++||..++ .++|+|+|+
T Consensus 75 e~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~-~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 75 AHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL-VNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred EECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE-eCCEEEEEEeCCCccccCCeEEeeC
Confidence 87654433 34 346799999999999999 4999 999999999997544 689999985
No 4
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-23 Score=170.78 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=97.3
Q ss_pred CCChhhhhhhhhhhcccCCCCCccccCCCCccccccCCCCCCcceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeee--
Q psy16273 96 TFYYFFRLQSFRAQLDIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEK-- 172 (227)
Q Consensus 96 ~l~~D~L~~~~~~~~r~~~~~~~~~~pP~~i~~~~~e~~~s~~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~-- 172 (227)
..++|+++..+.+...... ..+||+++...+ +.|+|.+|||||+++||+|++ +|.|+|+|+++..
T Consensus 19 ~~~fd~~~~~~~~~~~~~~----~~~P~vdi~e~~--------~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~ 86 (146)
T COG0071 19 SPGFDRLFREFGNLPESRP----TGTPPVDIEETD--------DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEE 86 (146)
T ss_pred ccchhhhhhhhhccccccc----CCCCcEEEEEcC--------CEEEEEEEcCCCChHHeEEEEECCEEEEEEEeccccc
Confidence 6788888888775433221 368899887543 579999999999999999999 9999999998752
Q ss_pred cCC-Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCCC-CCCeeeccC
Q psy16273 173 SDS-KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALG-APEKLIPIA 226 (227)
Q Consensus 173 ~d~-~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~e-~~~R~I~I~ 226 (227)
.++ ++ .+++|.|+|+||++||++.++|+| +||||+|++||..++ .++++|+|+
T Consensus 87 ~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~-~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 87 EEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred ccCCceEEEEEEeeeEEEEEECcccccccceeeEe-eCcEEEEEEeccccccccCceeecC
Confidence 222 33 467899999999999999999999 999999999999875 478999885
No 5
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.90 E-value=3.4e-23 Score=156.22 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=70.1
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
.++|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ ++..++|+|+|.||++||+++|+|+|++||+|+|++||
T Consensus 6 ~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 6 DDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred CCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 4889999999999999999999 9999999998765544 48899999999999999999999999669999999997
No 6
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.89 E-value=4.2e-23 Score=156.34 Aligned_cols=76 Identities=30% Similarity=0.496 Sum_probs=70.3
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
.+.|.|.+|||||+|+||+|++ +|.|+|+|+++++.++ +|..++|.|+|+||++||+++|+|+|++||+|+|++||
T Consensus 9 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~PK 86 (86)
T cd06497 9 RDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGPK 86 (86)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEecC
Confidence 3889999999999999999999 9999999998765544 48889999999999999999999999889999999997
No 7
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=6.1e-23 Score=154.27 Aligned_cols=76 Identities=38% Similarity=0.596 Sum_probs=70.0
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
.+.|.|.+|||||+|+||+|++ +|.|+|+|+++++.++ +|..|+|.|+|+||++||+++|+|+|++||+|+|++||
T Consensus 6 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK 83 (83)
T cd06478 6 KDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR 83 (83)
T ss_pred CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence 4889999999999999999999 9999999998765444 48889999999999999999999999779999999997
No 8
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=8e-23 Score=154.32 Aligned_cols=77 Identities=35% Similarity=0.523 Sum_probs=70.4
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~ 214 (227)
.+.|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ +|..++|.|+|.||++||+++|+|+|++||+|+|++||+
T Consensus 6 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk~ 84 (84)
T cd06498 6 KDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPRK 84 (84)
T ss_pred CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeCC
Confidence 3889999999999999999999 9999999998765544 488899999999999999999999995599999999985
No 9
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.88 E-value=1.9e-22 Score=155.09 Aligned_cols=76 Identities=28% Similarity=0.416 Sum_probs=71.0
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
.++|+|.|||.||+||||+|++ +|.|+|+|+|+++.++ ++..|+|+|+|.||++||.+.|+|+|++||+|+|++|.
T Consensus 14 ~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP~ 91 (91)
T cd06480 14 SEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91 (91)
T ss_pred CCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcCC
Confidence 3789999999999999999999 9999999999977654 58899999999999999999999999889999999994
No 10
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.87 E-value=1.2e-21 Score=148.24 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=68.9
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
.++|.|++|||||+||||+|++ +|.|+|+|+++.+.++ ++..|+|.|+|+||++||+++|+|+|++||||+|++|
T Consensus 6 ~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 6 KPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred CceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 4889999999999999999999 9999999998765433 5888999999999999999999999878999999987
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.84 E-value=8.9e-21 Score=142.74 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=67.4
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
.+.|.|.+|||||+||||+|++ +|.|+|+|+++... +..+++|.|+|.||++||+++|+|+|++||+|+|+++|
T Consensus 7 ~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~--~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 7 GDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD--GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred CCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC--CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 4889999999999999999999 99999999875432 34678999999999999999999998799999999986
No 12
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.84 E-value=9.2e-21 Score=143.83 Aligned_cols=76 Identities=29% Similarity=0.420 Sum_probs=68.2
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC---Ce--eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEE
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS---KS--VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 211 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~---~~--~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~l 211 (227)
.+.|.|.+|||||+|+||+|++ +|.|+|+|+++...+. .| .+++|.|+|.||++||.++|+|+|++||+|+|++
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 3889999999999999999999 9999999998654322 23 4689999999999999999999999999999999
Q ss_pred eC
Q psy16273 212 PL 213 (227)
Q Consensus 212 Pk 213 (227)
||
T Consensus 86 P~ 87 (87)
T cd06481 86 PR 87 (87)
T ss_pred CC
Confidence 96
No 13
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.84 E-value=8.6e-21 Score=143.70 Aligned_cols=76 Identities=38% Similarity=0.586 Sum_probs=68.8
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
.+.|.|.+|||||+|+||+|++ +|.|+|+|+++.+.++ ++..++|.|+|+||++||+++|+|.|.+||+|+|++|.
T Consensus 9 ~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~lP~ 86 (86)
T cd06475 9 ADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI 86 (86)
T ss_pred CCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEEecC
Confidence 3889999999999999999999 9999999998765444 47789999999999999999999999449999999993
No 14
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.83 E-value=7.2e-20 Score=139.60 Aligned_cols=88 Identities=24% Similarity=0.404 Sum_probs=70.9
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEee-ecCCCe-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEE
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEE-KSDSKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVE 210 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~-~~d~~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~ 210 (227)
.+.|.|.++||||.++||+|++ ++.|+|+|++.. ..+..+ ..+.|.|+|.||++||+++|+|.| +||+|+|+
T Consensus 6 ~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~GvL~I~ 84 (102)
T PF00011_consen 6 EDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-ENGVLTIT 84 (102)
T ss_dssp SSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TTSEEEEE
T ss_pred CCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cCCEEEEE
Confidence 3889999999999999999999 999999999883 233332 347899999999999999999999 99999999
Q ss_pred EeCCCCCC--CCeeeccC
Q psy16273 211 APLPALGA--PEKLIPIA 226 (227)
Q Consensus 211 lPk~~~e~--~~R~I~I~ 226 (227)
+||..... .+|+|+|+
T Consensus 85 ~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 85 IPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp EEBSSSCTTSSSCEE-ET
T ss_pred EEccccccCCCCeEEEeC
Confidence 99998652 79999985
No 15
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.83 E-value=3.5e-20 Score=138.25 Aligned_cols=75 Identities=40% Similarity=0.639 Sum_probs=68.4
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
+.|.|.+|||||+|+||+|++ ++.|+|+|+++...+. ++.+++|.|+|+||++||+++++|+|+.||+|+|++||
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 589999999999999999999 9999999998876543 47889999999999999999999999434999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.80 E-value=2.3e-19 Score=136.83 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=66.9
Q ss_pred cceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecC--C--CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSD--S--KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d--~--~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
.+.|.|.+|||||+|+||+|++ +|.|+|+|+++...+ . .+.+++|.|+|.||++||.++|+|+|..+|+|+|+.|
T Consensus 7 ~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~~~ 86 (87)
T cd06482 7 SSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETP 86 (87)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEeeC
Confidence 4789999999999999999999 999999999865432 1 2677899999999999999999999977779999998
No 17
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.77 E-value=1.7e-18 Score=131.30 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=64.7
Q ss_pred cceeEEEEecCCCCCCceEEEe-CC-eEEEEEEEeeec--CC-Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEE
Q psy16273 138 WAKSKSHYPFRLWSAAEYSFKS-HT-PVTVHAKHEEKS--DS-KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVL 207 (227)
Q Consensus 138 ~~~y~I~ldvpGF~pedI~V~v-~n-~L~V~Gk~e~~~--d~-~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvL 207 (227)
.+.|.|.++||||+|+||+|++ ++ .|+|+|++.... +. .+ .+++|.|+|+||++||+++|+|+| +||+|
T Consensus 8 ~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~-~nGvL 86 (92)
T cd06472 8 PEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL-ENGVL 86 (92)
T ss_pred CCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE-ECCEE
Confidence 3789999999999999999999 64 899999875322 12 23 356899999999999999999999 99999
Q ss_pred EEEEeC
Q psy16273 208 TVEAPL 213 (227)
Q Consensus 208 tI~lPk 213 (227)
+|++||
T Consensus 87 ~I~lPK 92 (92)
T cd06472 87 TVTVPK 92 (92)
T ss_pred EEEecC
Confidence 999997
No 18
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.74 E-value=1.6e-17 Score=126.11 Aligned_cols=72 Identities=17% Similarity=0.320 Sum_probs=63.4
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC--Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEE
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVE 210 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~--~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~ 210 (227)
+.|.|.++||||+++||+|++ ++.|+|+|++.....+ +| .+++|.|+|.||++||.+ +|+| +||+|+|+
T Consensus 11 ~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~-~~GvL~I~ 87 (90)
T cd06470 11 NNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL-ENGLLTID 87 (90)
T ss_pred CeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE-eCCEEEEE
Confidence 679999999999999999999 9999999998765432 23 256799999999999985 8999 99999999
Q ss_pred EeC
Q psy16273 211 APL 213 (227)
Q Consensus 211 lPk 213 (227)
+|+
T Consensus 88 l~~ 90 (90)
T cd06470 88 LER 90 (90)
T ss_pred EEC
Confidence 985
No 19
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.72 E-value=2.8e-17 Score=120.17 Aligned_cols=74 Identities=24% Similarity=0.465 Sum_probs=66.9
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCC-------CeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEE
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDS-------KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVE 210 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~-------~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~ 210 (227)
+.|.|.++||||++++|+|++ ++.|.|+|++...... .+..+.|.|+|.||.++|++.++|.| .||+|+|+
T Consensus 7 ~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~-~~G~L~I~ 85 (88)
T cd06464 7 DAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTIT 85 (88)
T ss_pred CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEE-eCCEEEEE
Confidence 789999999999999999999 9999999998765432 13568899999999999999999999 88999999
Q ss_pred EeC
Q psy16273 211 APL 213 (227)
Q Consensus 211 lPk 213 (227)
+||
T Consensus 86 ~pk 88 (88)
T cd06464 86 LPK 88 (88)
T ss_pred EcC
Confidence 997
No 20
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.71 E-value=4.1e-17 Score=123.39 Aligned_cols=73 Identities=23% Similarity=0.414 Sum_probs=63.8
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeec---CC--Ce-----eeeEEEEEEeCCCCCCcCCcEEEecCCCEE
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKS---DS--KS-----VYREYNREFLLPKGTNPESIKSSLSKDGVL 207 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~---d~--~~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGvL 207 (227)
+.|.|.++||||+++||+|++ ++.|+|+|++.... +. .+ .++.|.|+|.|| +||.+.|+|+| +||+|
T Consensus 10 ~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~-~dGvL 87 (93)
T cd06471 10 DEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKY-ENGVL 87 (93)
T ss_pred CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEE-ECCEE
Confidence 789999999999999999999 99999999986432 11 23 245699999998 79999999999 99999
Q ss_pred EEEEeC
Q psy16273 208 TVEAPL 213 (227)
Q Consensus 208 tI~lPk 213 (227)
+|++||
T Consensus 88 ~I~lPK 93 (93)
T cd06471 88 KITLPK 93 (93)
T ss_pred EEEEcC
Confidence 999997
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.43 E-value=1.1e-12 Score=91.70 Aligned_cols=74 Identities=26% Similarity=0.443 Sum_probs=67.3
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
+.|.|++++||+.+++|.|++ ++.|.|+|++..........+.|.+++.||..||++.++|.+ .+|+|+|.+||
T Consensus 6 ~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~-~~~~l~i~l~K 80 (80)
T cd00298 6 DEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLPK 80 (80)
T ss_pred CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEE-ECCEEEEEEcC
Confidence 789999999999999999999 999999998776544335678999999999999999999999 78999999997
No 22
>KOG0710|consensus
Probab=99.36 E-value=1.8e-12 Score=111.76 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=72.9
Q ss_pred ceeEEEEecCCCCCCceEEEe-CC-eEEEEEEEeeecCC---C--e-----eeeEEEEEEeCCCCCCcCCcEEEecCCCE
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HT-PVTVHAKHEEKSDS---K--S-----VYREYNREFLLPKGTNPESIKSSLSKDGV 206 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n-~L~V~Gk~e~~~d~---~--~-----~~R~F~R~f~LP~~VD~~~I~AsLs~nGv 206 (227)
+.|.+.+++||...+||+|++ ++ .|+|+|++....++ + + ..+.|.|+|.||++++.+.|+|.| +|||
T Consensus 94 ~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~-~nGV 172 (196)
T KOG0710|consen 94 DAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEM-ENGV 172 (196)
T ss_pred CceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHh-hCCe
Confidence 779999999999999999999 66 79999997654432 1 2 245799999999999999999999 9999
Q ss_pred EEEEEeCCCCC---CCCeeeccC
Q psy16273 207 LTVEAPLPALG---APEKLIPIA 226 (227)
Q Consensus 207 LtI~lPk~~~e---~~~R~I~I~ 226 (227)
|+|.+||..+. ..-++|.|.
T Consensus 173 L~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 173 LTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred EEEEEecccccccCCccceeecc
Confidence 99999999872 356666664
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.93 E-value=6.7e-09 Score=75.36 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=60.3
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
+.+.|++++||.++++++|++ ++.|.|+| ..|.+.+.||..||++..+|++ .+|.|.|.+||..+
T Consensus 6 ~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~------------~~~~~~~~l~~~I~~e~~~~~~-~~~~l~i~L~K~~~ 71 (78)
T cd06469 6 EDVKISVPLKGVKTSKVDIFCSDLYLKVNF------------PPYLFELDLAAPIDDEKSSAKI-GNGVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCCccccceEEEecCEEEEcC------------CCEEEEEeCcccccccccEEEE-eCCEEEEEEEeCCC
Confidence 779999999999999999999 99999988 2488999999999999999999 89999999999764
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.55 E-value=6.1e-07 Score=64.24 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=62.4
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
+.+.|.+.+||..++++.|.+ ++.|.|++.... ...|.+.+.|+..||++...+++ .+|.|.|.|+|+.+
T Consensus 6 ~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~-------~~~~~~~~~L~~~I~~~~s~~~~-~~~~l~i~L~K~~~ 76 (84)
T cd06463 6 DEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGG-------GKEYLLEGELFGPIDPEESKWTV-EDRKIEITLKKKEP 76 (84)
T ss_pred cEEEEEEEcCCCCccceEEEEecCEEEEEeeCCC-------CCceEEeeEccCccchhhcEEEE-eCCEEEEEEEECCC
Confidence 679999999999999999999 999999997431 24578889999999999999999 89999999999875
No 25
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.02 E-value=3.6e-05 Score=56.17 Aligned_cols=70 Identities=13% Similarity=0.021 Sum_probs=61.6
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
+...|.+.+||..++++.|+. ++.|.|++... ..+.|...+.|+..|+++..++.+ .+|.|.|.|+|..+
T Consensus 7 ~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~-------~~~~~~~~~~L~~~I~~~~s~~~~-~~~~vei~L~K~~~ 77 (84)
T cd06466 7 TSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP-------GGSEYQLELDLFGPIDPEQSKVSV-LPTKVEITLKKAEP 77 (84)
T ss_pred CEEEEEEEECCCCHHHCEEEEecCEEEEEEECC-------CCCeEEEecccccccCchhcEEEE-eCeEEEEEEEcCCC
Confidence 678999999999999999999 99999988643 124578889999999999999999 89999999999875
No 26
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.91 E-value=4.9e-05 Score=65.27 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=52.3
Q ss_pred eeEEEEecCCCCCCc-eEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 140 KSKSHYPFRLWSAAE-YSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 140 ~y~I~ldvpGF~ped-I~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
.+.|.+||||.++++ |+|++ .+.+.|..+... .+.+++.||.. +++.+.++| .||||.|.+-+...
T Consensus 103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~---------~~~krv~L~~~-~~e~~~~t~-nNgILEIri~~~~~ 170 (177)
T PF05455_consen 103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE---------KYLKRVALPWP-DPEITSATF-NNGILEIRIRRTEE 170 (177)
T ss_pred cEEEEEeCCCCCcccceeeEeecCCceEEEecCC---------ceEeeEecCCC-ccceeeEEE-eCceEEEEEeecCC
Confidence 589999999999888 99999 555444443222 25689999977 688889999 99999999988764
No 27
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=97.40 E-value=5e-05 Score=54.40 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=28.0
Q ss_pred HHHhhhhhhhcccCCCCcccccccCCCCChhhhhhhhh
Q psy16273 70 EEFQKLSYLICSVGNSNNLLITHYGSTFYYFFRLQSFR 107 (227)
Q Consensus 70 p~l~r~~~~~~~~~~psrL~dp~Fgs~l~~D~L~~~~~ 107 (227)
|++.|+||+... |+|||||+||.++..++|+..+.
T Consensus 8 Pw~rR~~~~~~~---PsRiFDQ~FGEgL~d~DLf~~~~ 42 (59)
T PF00525_consen 8 PWFRRPLWPFFF---PSRIFDQNFGEGLFDSDLFPSSS 42 (59)
T ss_dssp HHHHGGGSSSS----SCHHHCTTSEESSTTTT---BT-
T ss_pred cccccccccccC---chhhHHHhhccccCHhhhccccc
Confidence 999999999554 99999999999999999998763
No 28
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.12 E-value=0.0028 Score=57.23 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=57.7
Q ss_pred CcceeEEEEecCCC-CCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEe-cCCCEEEEEEe
Q psy16273 137 LWAKSKSHYPFRLW-SAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSL-SKDGVLTVEAP 212 (227)
Q Consensus 137 ~~~~y~I~ldvpGF-~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsL-s~nGvLtI~lP 212 (227)
..+.++|++.+||. +..+|++.| ++.|.|..... .|.-.+.||-.||.+...|.+ .+.++|+|++|
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~----------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP----------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC----------ceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 35789999999999 999999999 99999988432 466779999999999999999 44599999998
No 29
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=96.90 E-value=0.015 Score=41.05 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=53.8
Q ss_pred ceeEEEEecCCC--CCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 139 AKSKSHYPFRLW--SAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 139 ~~y~I~ldvpGF--~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
+...|.+.+++. +++++.|++ ++.|.|+...... ..|.-...|...|+++.....+ .++.|.|.|.|
T Consensus 10 ~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~-------~~~~~~~~L~~~I~~~~s~~~~-~~~~i~i~L~K 79 (79)
T PF04969_consen 10 DEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG-------KEYLLEGELFGEIDPDESTWKV-KDNKIEITLKK 79 (79)
T ss_dssp SEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS-------CEEEEEEEBSS-BECCCEEEEE-ETTEEEEEEEB
T ss_pred CEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC-------ceEEEEEEEeeeEcchhcEEEE-ECCEEEEEEEC
Confidence 668899999665 599999999 9999999743221 5677778899999999999999 78899999986
No 30
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.38 E-value=0.037 Score=42.81 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=57.2
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
+...|++.+++. +++.|.. .+.|.|++.... . .+.|.-.+.|...|+++.-+.++ .++.|.|.|.|..
T Consensus 10 ~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~-~-----~~~y~~~~~L~~~I~pe~s~~~v-~~~kveI~L~K~~ 78 (108)
T cd06465 10 DVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG-G-----GKKYEFDLEFYKEIDPEESKYKV-TGRQIEFVLRKKE 78 (108)
T ss_pred CEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC-C-----CeeEEEEeEhhhhccccccEEEe-cCCeEEEEEEECC
Confidence 668899999997 8999999 999999985321 1 14466777999999999999999 7899999999987
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.11 E-value=0.052 Score=39.99 Aligned_cols=70 Identities=9% Similarity=0.082 Sum_probs=57.6
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
+...|++.++|..++++.|+. ++.|.+.++... + ..|.-.+.|...|++++.+..+ ..+-+.|.|.|..+
T Consensus 7 ~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~--~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K~~~ 77 (84)
T cd06489 7 SQVVITILIKNVKPEDVSVEFEKRELSATVKLPS--G-----NDYSLKLHLLHPIVPEQSSYKI-LSTKIEIKLKKTEA 77 (84)
T ss_pred CEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC--C-----CcEEEeeecCceecchhcEEEE-eCcEEEEEEEcCCC
Confidence 568899999999999999999 999999986421 1 2366677999999999878888 57789999999764
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=95.94 E-value=0.047 Score=39.81 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=53.4
Q ss_pred ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCC-CEEEEEEeCCC
Q psy16273 139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKD-GVLTVEAPLPA 215 (227)
Q Consensus 139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~n-GvLtI~lPk~~ 215 (227)
+...|++.+| ++.++|+.|++ .+.|.|+.+. +.+ -+. -.|...||++...-++ .+ ..|.|.|+|+.
T Consensus 8 ~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~-----~~~---~l~--~~L~~~I~~~~s~w~~-~~~~~v~i~L~K~~ 76 (85)
T cd06467 8 DEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG-----GEP---LLD--GELYAKVKVDESTWTL-EDGKLLEITLEKRN 76 (85)
T ss_pred CEEEEEEECCCCCcceeEEEEEEcCEEEEEECC-----CCc---eEc--CcccCceeEcCCEEEE-eCCCEEEEEEEECC
Confidence 5688999996 89999999999 9999998742 111 122 3588999999877888 67 89999999987
Q ss_pred C
Q psy16273 216 L 216 (227)
Q Consensus 216 ~ 216 (227)
+
T Consensus 77 ~ 77 (85)
T cd06467 77 E 77 (85)
T ss_pred C
Confidence 5
No 33
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=95.14 E-value=0.27 Score=36.53 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=55.6
Q ss_pred ceeEEEEecCCCCC---CceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEE-eCCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 139 AKSKSHYPFRLWSA---AEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREF-LLPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 139 ~~y~I~ldvpGF~p---edI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f-~LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
+...|.+.+|+-.+ +++.|+. .+.|.|.+.... + ..|.-.+ +|-..|+++.-+..+ ..+-+.|.|.|
T Consensus 11 ~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~----~---~~~~~~~~~L~~~I~~e~s~~~~-~~~ki~i~L~K 82 (92)
T cd06468 11 KFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN----G---KNYRFTINRLLKKIDPEKSSFKV-KTDRIVITLAK 82 (92)
T ss_pred CEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC----C---cEEEEEehHhhCccCccccEEEE-eCCEEEEEEEe
Confidence 67899999999877 9999999 999999884311 1 2244445 489999999988888 67889999999
Q ss_pred CCC
Q psy16273 214 PAL 216 (227)
Q Consensus 214 ~~~ 216 (227)
+.+
T Consensus 83 ~~~ 85 (92)
T cd06468 83 KKE 85 (92)
T ss_pred CCC
Confidence 875
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=94.28 E-value=0.32 Score=36.03 Aligned_cols=67 Identities=15% Similarity=0.023 Sum_probs=51.0
Q ss_pred ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeCCC
Q psy16273 139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPLPA 215 (227)
Q Consensus 139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk~~ 215 (227)
+...|.+.+| |..++|++|++ .+.|.|..+ ++. .+ -.-+|...|+++.-+=++ .+| .|.|.|.|..
T Consensus 8 ~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~-----~~~----~~-~~g~L~~~I~~d~Stw~i-~~~~~l~i~L~K~~ 76 (85)
T cd06493 8 EDLTLTIRLPEDTTKEDIRIKFLPDHISIALK-----DQA----PL-LEGKLYSSIDHESSTWII-KENKSLEVSLIKKD 76 (85)
T ss_pred CEEEEEEECCCCCChhhEEEEEecCEEEEEeC-----CCC----eE-EeCcccCcccccCcEEEE-eCCCEEEEEEEECC
Confidence 6688999995 99999999999 999999752 111 01 233789999999755556 566 7999999987
Q ss_pred C
Q psy16273 216 L 216 (227)
Q Consensus 216 ~ 216 (227)
+
T Consensus 77 ~ 77 (85)
T cd06493 77 E 77 (85)
T ss_pred C
Confidence 4
No 35
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=94.00 E-value=0.67 Score=34.60 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=57.6
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
+...|.+-+.|..++++.|.. .+.|.|+..... ...|.-.+.|-..|+++..+-.. ..+-+.|.|.|+.+
T Consensus 10 ~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~-------~~~y~~~l~L~~~I~~~~s~~~v-~~~kvei~L~K~~~ 80 (87)
T cd06488 10 SHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG-------NKEFQLDIELWGVIDVEKSSVNM-LPTKVEIKLRKAEP 80 (87)
T ss_pred CEEEEEEEECcCCccceEEEecCCEEEEEEECCC-------CceEEEEeeccceEChhHcEEEe-cCcEEEEEEEeCCC
Confidence 567888888999999999999 889988765332 13477778999999999888788 78999999999875
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=88.19 E-value=4.1 Score=31.28 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=49.4
Q ss_pred ceeEEEEecC-CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeCCC
Q psy16273 139 AKSKSHYPFR-LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPLPA 215 (227)
Q Consensus 139 ~~y~I~ldvp-GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk~~ 215 (227)
+...|++.+| |.+++|+.|++ .+.|.|.-+-+ .+... .|...|+++.-.=++ ++| +|.|.|.|..
T Consensus 15 ~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~-----~~l~G------~L~~~I~~destWtl-ed~k~l~I~L~K~~ 82 (93)
T cd06494 15 DEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ-----EVLKG------KLFDSVVADECTWTL-EDRKLIRIVLTKSN 82 (93)
T ss_pred CEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE-----EEEcC------cccCccCcccCEEEE-ECCcEEEEEEEeCC
Confidence 5577777775 89999999999 99999875211 12222 678899999877788 555 5899999975
Q ss_pred C
Q psy16273 216 L 216 (227)
Q Consensus 216 ~ 216 (227)
.
T Consensus 83 ~ 83 (93)
T cd06494 83 R 83 (93)
T ss_pred C
Confidence 3
No 37
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=87.19 E-value=8.2 Score=30.27 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=48.7
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
+...|++++++ ++|++|++ .+.|.++|.-. ++ .++.-.+.|=..|+++.-+-.. ..--+.|.|.|+.
T Consensus 11 ~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~--~g-----~~y~~~l~l~~~I~pe~Sk~~v-~~r~ve~~L~K~~ 78 (106)
T cd00237 11 DYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG--DN-----VKIYNEIELYDRVDPNDSKHKR-TDRSILCCLRKGK 78 (106)
T ss_pred CEEEEEEEeCC--CCCcEEEEecCEEEEEEECC--CC-----cEEEEEEEeecccCcccCeEEe-CCceEEEEEEeCC
Confidence 56889999998 79999999 99999998432 11 1244466888899998655555 3444666788875
No 38
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=81.18 E-value=14 Score=27.66 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=48.4
Q ss_pred ceeEEEEecC---CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCC-EEEEEEeC
Q psy16273 139 AKSKSHYPFR---LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDG-VLTVEAPL 213 (227)
Q Consensus 139 ~~y~I~ldvp---GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nG-vLtI~lPk 213 (227)
+...|++.+| |.+++||+|++ .+.|.|.-+.+ .-++.. .|...|+++.-.=++ ++| .|.|.|-|
T Consensus 8 ~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~----~~~i~G------~L~~~V~~des~Wtl-ed~~~l~i~L~K 76 (87)
T cd06492 8 SEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQ----PPIIDG------ELYNEVKVEESSWLI-EDGKVVTVNLEK 76 (87)
T ss_pred CEEEEEEECCCCCCccceEEEEEEecCEEEEEECCC----ceEEeC------cccCcccccccEEEE-eCCCEEEEEEEE
Confidence 4567777774 38999999999 99999854211 112333 567888998767778 776 89999999
Q ss_pred CCC
Q psy16273 214 PAL 216 (227)
Q Consensus 214 ~~~ 216 (227)
...
T Consensus 77 ~~~ 79 (87)
T cd06492 77 INK 79 (87)
T ss_pred CCC
Confidence 754
No 39
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=76.76 E-value=13 Score=34.61 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=54.7
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
+...|.|-+.|+.++++.|+. .+.|.|+-..... ..|.-.+.|-..|+++..+..+ .---+.|.|.|..+
T Consensus 166 ~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~-------~~y~~~~~L~~~I~p~~s~~~v-~~~Kiei~l~K~~~ 236 (356)
T PLN03088 166 EEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGE-------DAYHLQPRLFGKIIPDKCKYEV-LSTKIEIRLAKAEP 236 (356)
T ss_pred CEEEEEEEecCCChHHcEEEeecCEEEEEEecCCC-------cceeecccccccccccccEEEE-ecceEEEEEecCCC
Confidence 567888889999999999999 9999998753211 2355567999999999878887 44578888888764
No 40
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=67.15 E-value=8.5 Score=29.22 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=30.0
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
.+|.=+..|| +++.+.|+-++ .+|.|+|.+-++..
T Consensus 8 ~~~~v~adlP-G~~kedI~V~v-~~~~L~I~ger~~~ 42 (87)
T cd06482 8 SNVLASVDVC-GFEPDQVKVKV-KDGKVQVSAERENR 42 (87)
T ss_pred CEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEecc
Confidence 3577788897 88999999999 89999999988653
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=63.61 E-value=58 Score=25.42 Aligned_cols=70 Identities=11% Similarity=0.076 Sum_probs=49.6
Q ss_pred ceeEEEEecCC--CCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCE-EEEEEeCC
Q psy16273 139 AKSKSHYPFRL--WSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGV-LTVEAPLP 214 (227)
Q Consensus 139 ~~y~I~ldvpG--F~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGv-LtI~lPk~ 214 (227)
+...|.+.||. .+.+||.|++ .+.|.|.-+.. +.+.-++.. .|+..|+++.-.=++ ++|- |.|.|-|.
T Consensus 14 ~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~-~~~~~~i~G------~L~~~V~~des~Wtl-ed~~~l~I~L~K~ 85 (102)
T cd06495 14 TDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDG-GGEKVLMEG------EFTHKINTENSLWSL-EPGKCVLLSLSKC 85 (102)
T ss_pred CeEEEEEECCCCCccceEEEEEEEcCEEEEEEecC-CCCceEEeC------cccCcccCccceEEE-eCCCEEEEEEEEC
Confidence 55889999984 3689999999 99998876411 000113333 577888888767778 7755 89999997
Q ss_pred CC
Q psy16273 215 AL 216 (227)
Q Consensus 215 ~~ 216 (227)
..
T Consensus 86 ~~ 87 (102)
T cd06495 86 SE 87 (102)
T ss_pred CC
Confidence 53
No 42
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=62.10 E-value=15 Score=27.23 Aligned_cols=34 Identities=6% Similarity=0.174 Sum_probs=29.4
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
..|.=.+.|| +++++.|.-++ .+|.|+|++.+..
T Consensus 7 ~~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06478 7 DRFSVNLDVK-HFSPEELSVKV-LGDFVEIHGKHEE 40 (83)
T ss_pred ceEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEce
Confidence 3588889997 89999999999 8999999997653
No 43
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=60.72 E-value=15 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=30.4
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
.+|.=++.|| +++.+.|.-.+ .+|.|+|.+.+...
T Consensus 11 ~~~~v~~~lP-G~~kedi~v~~-~~~~L~I~g~~~~~ 45 (90)
T cd06470 11 NNYRITLAVA-GFSEDDLEIEV-ENNQLTVTGKKADE 45 (90)
T ss_pred CeEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEccc
Confidence 3678889998 68999999999 89999999988764
No 44
>PRK10743 heat shock protein IbpA; Provisional
Probab=59.19 E-value=19 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=26.5
Q ss_pred EEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 182 YNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 182 F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
|.=+..|| +|+.+.|.-++ .+|+|+|.+-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v-~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITA-QDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEE-ECCEEEEEEEECc
Confidence 55556787 89999999999 8999999997654
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=57.66 E-value=60 Score=25.81 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=41.0
Q ss_pred ceEEEe-CCeEEEEEEEeee-cCCCe--e--eeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 154 EYSFKS-HTPVTVHAKHEEK-SDSKS--V--YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 154 dI~V~v-~n~L~V~Gk~e~~-~d~~~--~--~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
.++++. ++.|.|+.+.... ....+ . ...-.-.+.||++...+++.... .+|-++|+--
T Consensus 86 ~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~~~~~~~i~I~lP~~~~l~~i~i~~-~~G~i~i~~i 149 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSKDRESFFFKGFNFNNSDNKSKITIYLPKDYKLDKIDIKT-SSGDITIEDI 149 (166)
T ss_pred EEEEEEcCCEEEEEEecccccccceEEEcccCCCcEEEEEECCCCceeEEEEEe-ccccEEEEcc
Confidence 688999 9999998872211 11122 1 12346678999999888888988 7899998753
No 46
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=57.56 E-value=16 Score=26.63 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=30.7
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
..|.=.+.|| ++.++.|.-.+ .++.|+|.+.+...
T Consensus 7 ~~~~v~~dlp-G~~~edI~v~v-~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVK-GFKPEELKVKV-SDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECC-CCCHHHcEEEE-ECCEEEEEEEEeee
Confidence 4688899998 59999999999 89999999988753
No 47
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=57.47 E-value=17 Score=27.07 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=29.4
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
..|.=.+.|| +++++.|.-++ .+|.|+|.+-|+.
T Consensus 8 ~~~~v~~dlp-G~~pedi~V~v-~~~~L~I~ger~~ 41 (81)
T cd06479 8 DTYQFAVDVS-DFSPEDIIVTT-SNNQIEVHAEKLA 41 (81)
T ss_pred CeEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEec
Confidence 3577788997 89999999999 8999999998754
No 48
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=56.65 E-value=17 Score=26.82 Aligned_cols=34 Identities=44% Similarity=0.507 Sum_probs=29.7
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
..|.=.+.|| +|+.+.|.-.+ .+|.|+|.+-+..
T Consensus 10 ~~~~i~~~lP-Gv~~edi~v~~-~~~~L~I~g~~~~ 43 (93)
T cd06471 10 DEYIVEADLP-GFKKEDIKLDY-KDGYLTISAKRDE 43 (93)
T ss_pred CEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 4578889998 79999999999 8999999998764
No 49
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=48.45 E-value=34 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred EEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 181 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 181 ~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
+|.=+..|| +|+.+.|.-.+ ++|+|+|.+-+..
T Consensus 44 ~y~v~adlP-Gv~kedi~V~v-~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALA-GFRQEDLDIQL-EGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 366667787 88999999999 8999999998654
No 50
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=47.02 E-value=17 Score=26.02 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=21.4
Q ss_pred ecCCCCCCceEEEe-CCeEEEEEEE
Q psy16273 146 PFRLWSAAEYSFKS-HTPVTVHAKH 169 (227)
Q Consensus 146 dvpGF~pedI~V~v-~n~L~V~Gk~ 169 (227)
.+--|+++.|.+++ .+.|.|.|+.
T Consensus 19 ~I~~f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 19 GILSFDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EEEEEETTEEEEEETTEEEEEEEEE
T ss_pred cEEEECCCEEEEEeCCEEEEEECce
Confidence 36678999999999 9999999985
No 51
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=44.16 E-value=33 Score=24.30 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=31.2
Q ss_pred CCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 152 AAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 152 pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
|+.++|++ ++.++|.|... ..++.||+.|.. .... +++.+++...
T Consensus 2 P~gV~v~~~~~~i~v~G~~g------------~l~~~~~~~v~v---~~~~-~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKG------------ELSRPIPPGVKV---EIKV-EDNKITVSVL 47 (77)
T ss_dssp STTCEEEEETTEEEEESSSS------------EEEEEETTTEEE---EEEE-ETTSEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCE------------eEEEECCCCeeE---EEEc-CCCceEEEEC
Confidence 67899999 99999999533 355677877555 2335 5676666554
No 52
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=43.38 E-value=22 Score=27.85 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=18.3
Q ss_pred cCCCCCCceEEEe-CCeEEEEEE
Q psy16273 147 FRLWSAAEYSFKS-HTPVTVHAK 168 (227)
Q Consensus 147 vpGF~pedI~V~v-~n~L~V~Gk 168 (227)
+.|+++++++|.+ +|.+.++--
T Consensus 17 i~~l~~~ql~vsl~~G~v~L~nl 39 (118)
T PF12624_consen 17 IENLDKDQLSVSLWNGEVELRNL 39 (118)
T ss_pred HhcCCHHHeeeeeccCceEEEcc
Confidence 3588999999999 998888764
No 53
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=42.52 E-value=46 Score=24.67 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=27.4
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~ 214 (227)
.+|.=.+.|| +++.+.|.-++ .+|.|+|.+-+.
T Consensus 7 ~~~~i~~~lp-G~~~edi~I~~-~~~~L~I~g~~~ 39 (102)
T PF00011_consen 7 DEYIIKVDLP-GFDKEDIKIKV-DDNKLVISGKRK 39 (102)
T ss_dssp SEEEEEEE-T-TS-GGGEEEEE-ETTEEEEEEEEE
T ss_pred CEEEEEEECC-CCChHHEEEEE-ecCccceeceee
Confidence 3578889998 88999999999 899999999887
No 54
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=42.49 E-value=39 Score=22.95 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=18.2
Q ss_pred CCCCCceEEEe-CCeEEEEEEEe
Q psy16273 149 LWSAAEYSFKS-HTPVTVHAKHE 170 (227)
Q Consensus 149 GF~pedI~V~v-~n~L~V~Gk~e 170 (227)
+|...+|.|.+ ++.+.++|.-.
T Consensus 13 ~~~~~~i~v~v~~g~v~L~G~v~ 35 (64)
T PF04972_consen 13 WLPDSNISVSVENGVVTLSGEVP 35 (64)
T ss_dssp CTT-TTEEEEEECTEEEEEEEES
T ss_pred ccCCCeEEEEEECCEEEEEeeCc
Confidence 57777899999 99999999753
No 55
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=36.73 E-value=56 Score=24.31 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=27.6
Q ss_pred EEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 181 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 181 ~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
.|.=.+.|| +++++.|+-++ .||.|+|.+-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRT-VDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 467778885 78899999999 8999999998753
No 56
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=36.58 E-value=27 Score=26.43 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.8
Q ss_pred ecCCCCCCceEEEe-CCeEEEEEEE
Q psy16273 146 PFRLWSAAEYSFKS-HTPVTVHAKH 169 (227)
Q Consensus 146 dvpGF~pedI~V~v-~n~L~V~Gk~ 169 (227)
++--|+++.|.+++ .+.|.|+|+.
T Consensus 37 ~I~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 37 GLVVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred ceEEECCCEEEEEcCceEEEEEccc
Confidence 47789999999999 9999999974
No 57
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=35.53 E-value=58 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=28.3
Q ss_pred EEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 181 EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 181 ~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
.|.=++.|| +++++.|.-.+ .+|.|+|++-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v-~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQV-FEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 477778885 78899999999 9999999998765
No 58
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=35.34 E-value=26 Score=26.80 Aligned_cols=24 Identities=8% Similarity=0.121 Sum_probs=21.9
Q ss_pred ecCCCCCCceEEEe-CCeEEEEEEE
Q psy16273 146 PFRLWSAAEYSFKS-HTPVTVHAKH 169 (227)
Q Consensus 146 dvpGF~pedI~V~v-~n~L~V~Gk~ 169 (227)
+|--|++++|.+.+ .+.|+|+|+.
T Consensus 18 ~V~sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 18 EVISFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred eEEEECCCEEEEEeCcEEEEEEcce
Confidence 57789999999999 9999999974
No 59
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=34.80 E-value=61 Score=22.69 Aligned_cols=35 Identities=34% Similarity=0.397 Sum_probs=30.0
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
.+|.=.+.||. ++++.|.-++ .++.|.|.+.+...
T Consensus 7 ~~~~i~~~lpg-~~~~~i~V~v-~~~~l~I~g~~~~~ 41 (88)
T cd06464 7 DAYVVEADLPG-FKKEDIKVEV-EDGVLTISGEREEE 41 (88)
T ss_pred CEEEEEEECCC-CCHHHeEEEE-ECCEEEEEEEEecc
Confidence 46888899986 9999999999 78999999988753
No 60
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=34.28 E-value=67 Score=23.91 Aligned_cols=34 Identities=9% Similarity=0.184 Sum_probs=28.2
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
..|.=...|| +++++.|.-++ .+|.|+|.+.+..
T Consensus 10 ~~~~v~~dlp-G~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06497 10 DKFTIYLDVK-HFSPEDLTVKV-LDDYVEIHGKHSE 43 (86)
T ss_pred CEEEEEEECC-CCCHHHeEEEE-ECCEEEEEEEEcc
Confidence 3577788885 88999999999 8999999997643
No 61
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=33.00 E-value=2e+02 Score=21.24 Aligned_cols=69 Identities=9% Similarity=-0.025 Sum_probs=46.1
Q ss_pred ceeEEEEecCC--CCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEec-CCCEEEEEEeCC
Q psy16273 139 AKSKSHYPFRL--WSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLS-KDGVLTVEAPLP 214 (227)
Q Consensus 139 ~~y~I~ldvpG--F~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs-~nGvLtI~lPk~ 214 (227)
+...|.+=.++ ...+.+.+.. .+.|.|+-... ...|...++|-..|+++. +.++. .-|-+.|.|+|.
T Consensus 8 ~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~--------~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~ 78 (87)
T cd06490 8 SEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG--------DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK 78 (87)
T ss_pred CEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC--------CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence 44566666664 4555555666 66888876433 133677778999999885 55552 368999999997
Q ss_pred CC
Q psy16273 215 AL 216 (227)
Q Consensus 215 ~~ 216 (227)
++
T Consensus 79 e~ 80 (87)
T cd06490 79 EP 80 (87)
T ss_pred CC
Confidence 75
No 62
>KOG3591|consensus
Probab=30.91 E-value=48 Score=28.34 Aligned_cols=25 Identities=8% Similarity=-0.036 Sum_probs=22.0
Q ss_pred CCCCCCceEEEe--CCeEEEEEEEeee
Q psy16273 148 RLWSAAEYSFKS--HTPVTVHAKHEEK 172 (227)
Q Consensus 148 pGF~pedI~V~v--~n~L~V~Gk~e~~ 172 (227)
.|++|+.|.=.+ +|+|+|+|.+...
T Consensus 125 ~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 125 EDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred CCCChhheEEeeCCCceEEEEccCCCC
Confidence 699999999999 9999999976553
No 63
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=29.33 E-value=1.5e+02 Score=25.29 Aligned_cols=43 Identities=12% Similarity=0.130 Sum_probs=29.3
Q ss_pred CCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 152 AAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 152 pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
|+.++|++ ++.|+|+|...+ .. ..||..| .... +++.|.|..+
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~----------l~--~~~~~~v-----~i~~-~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGT----------LS--RKIPDLI-----TIEI-QDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEE----------EE--EECCCCe-----EEEE-eCCEEEEEcC
Confidence 59999999 999999996543 12 3445433 3455 6777777754
No 64
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=28.54 E-value=1.4e+02 Score=20.76 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=25.2
Q ss_pred ceeEEEEecCCCCCCceEEEe--CCeEEEEEE
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS--HTPVTVHAK 168 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v--~n~L~V~Gk 168 (227)
..|.|++..+||.+..-+|.+ +....|...
T Consensus 35 G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~ 66 (71)
T PF08308_consen 35 GEHTVTVEKPGYEPYTKTVTVKPGETTTVNVT 66 (71)
T ss_pred ccEEEEEEECCCeeEEEEEEECCCCEEEEEEE
Confidence 569999999999999999999 667777664
No 65
>KOG3413|consensus
Probab=28.50 E-value=24 Score=29.91 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=18.7
Q ss_pred CCCCCCcCCcEEEecCCCEEEEEEeC
Q psy16273 188 LPKGTNPESIKSSLSKDGVLTVEAPL 213 (227)
Q Consensus 188 LP~~VD~~~I~AsLs~nGvLtI~lPk 213 (227)
|.+.++.+.-.+.| .||||||.++-
T Consensus 65 l~e~~~~~~~Dv~y-~~GVLTl~lg~ 89 (156)
T KOG3413|consen 65 LAEEVPGEGFDVDY-ADGVLTLKLGS 89 (156)
T ss_pred HHhhcCcccccccc-ccceEEEEecC
Confidence 45555555556788 89999999983
No 66
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=28.37 E-value=1.4e+02 Score=22.06 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=27.5
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
.+|.=.+.|| +|+.+.|.-.+..+++|+|.+-+..
T Consensus 9 ~~~~i~~~lP-Gv~~edi~i~v~~~~~L~I~g~~~~ 43 (92)
T cd06472 9 EAHVFKADVP-GVKKEDVKVEVEDGRVLRISGERKK 43 (92)
T ss_pred CeEEEEEECC-CCChHhEEEEEeCCCEEEEEEEecc
Confidence 4577888997 5899999999933459999997754
No 67
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=27.54 E-value=1.9e+02 Score=24.84 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=29.2
Q ss_pred CCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 152 AAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 152 pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
|++++|++ ++.++|+|.+.+ ..+.| |.. .++..+ +||.|.|...
T Consensus 13 P~~V~v~i~~~~v~VkGp~G~----------L~~~~--~~~----~v~i~~-~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKGE----------LTRDF--WYP----GVTISV-EDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCeE----------EEEEe--cCC----cEEEEE-ECCEEEEEEC
Confidence 69999999 999999996543 22333 221 234455 7788887754
No 68
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=27.07 E-value=50 Score=23.32 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=18.7
Q ss_pred EecCCC-CCCceEEEe-CCeEEEEE
Q psy16273 145 YPFRLW-SAAEYSFKS-HTPVTVHA 167 (227)
Q Consensus 145 ldvpGF-~pedI~V~v-~n~L~V~G 167 (227)
+.-+|| .-+.|+|++ .|.|+|+.
T Consensus 33 L~~aGF~~G~~v~V~v~~g~lvIt~ 57 (57)
T PF08845_consen 33 LEEAGFTIGDPVKVRVMPGCLVITP 57 (57)
T ss_pred hHHhCCCCCCEEEEEEECCEEEEeC
Confidence 356899 567799999 99999973
No 69
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=26.63 E-value=1.2e+02 Score=22.48 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.0
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
..|.=.+.|| +++++.|.-++ .++.|+|++-+..
T Consensus 10 ~~~~v~~dlP-G~~~edi~V~v-~~~~L~I~g~~~~ 43 (86)
T cd06475 10 DRWKVSLDVN-HFAPEELVVKT-KDGVVEITGKHEE 43 (86)
T ss_pred CeEEEEEECC-CCCHHHEEEEE-ECCEEEEEEEECc
Confidence 3578888895 89999999999 8899999998764
No 70
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=24.85 E-value=1.7e+02 Score=20.38 Aligned_cols=33 Identities=9% Similarity=-0.088 Sum_probs=27.0
Q ss_pred ceeEEEEecCCC-CCCceEEEe-CCeEEEEEEEee
Q psy16273 139 AKSKSHYPFRLW-SAAEYSFKS-HTPVTVHAKHEE 171 (227)
Q Consensus 139 ~~y~I~ldvpGF-~pedI~V~v-~n~L~V~Gk~e~ 171 (227)
+.|.+.+++++- +|++.+.++ ++.|.|+=.+.+
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~ 70 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKE 70 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCC
Confidence 458888898654 999999999 999999876543
No 71
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=24.24 E-value=2.2e+02 Score=24.61 Aligned_cols=46 Identities=26% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEe
Q psy16273 152 AAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212 (227)
Q Consensus 152 pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lP 212 (227)
|++++|++ ++.++|+|.+.+ .+|.| |..- ..|.... +||.|.|+.+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G~----------L~~~~--~~~~--~~i~i~~-~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYGE----------LTRSF--RHLP--VDIKLSK-DGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCce----------EEEEe--cCCC--ceEEEEe-CCCEEEEEeC
Confidence 69999999 999999996543 23333 2210 1345566 7888888755
No 72
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=22.90 E-value=1.4e+02 Score=22.29 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=28.0
Q ss_pred eEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 180 REYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 180 R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
..|.=.+.|| +++++.|.-++ .+|.|+|++-+..
T Consensus 7 d~~~v~~dlp-G~~~edI~V~v-~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVR-GFSPEDLSVRV-DGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECC-CCChHHeEEEE-ECCEEEEEEEEee
Confidence 3477778885 78899999999 8999999998754
No 73
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=21.03 E-value=2.8e+02 Score=23.46 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=17.5
Q ss_pred CCCCCceEEEe-CCeEEEEEEEe
Q psy16273 149 LWSAAEYSFKS-HTPVTVHAKHE 170 (227)
Q Consensus 149 GF~pedI~V~v-~n~L~V~Gk~e 170 (227)
-|.|.++++.. .+.+.|+|...
T Consensus 127 ~F~~~~i~v~~~~~~V~V~G~l~ 149 (181)
T TIGR02761 127 VFYPKSVEWNPQEGTVKVRGHLK 149 (181)
T ss_pred EEEeeeEEEccCCCEEEEEEEEE
Confidence 46778888888 89999999644
No 74
>PRK02913 hypothetical protein; Provisional
Probab=20.69 E-value=67 Score=27.23 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=13.2
Q ss_pred EEecCCCEEEEEEeCC
Q psy16273 199 SSLSKDGVLTVEAPLP 214 (227)
Q Consensus 199 AsLs~nGvLtI~lPk~ 214 (227)
-.||+||+|.|++.++
T Consensus 112 mNLSEDgiLVi~Le~r 127 (150)
T PRK02913 112 MNLSEDGILVIDLEQR 127 (150)
T ss_pred cccccCCEEEEEecCc
Confidence 3568999999999874
No 75
>KOG3158|consensus
Probab=20.13 E-value=4.1e+02 Score=23.19 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=49.1
Q ss_pred ceeEEEEecCCCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCC
Q psy16273 139 AKSKSHYPFRLWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215 (227)
Q Consensus 139 ~~y~I~ldvpGF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~ 215 (227)
+...+++.|+ ..++..|.+ ...|+.+|+..... -.+.-.+.|-+.||+++.+-+-+ +-++..++++.
T Consensus 17 ~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~------~~~~~~ief~~eIdpe~sk~k~~--~r~if~i~~K~ 84 (180)
T KOG3158|consen 17 DLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADN------HKYENEIEFFDEIDPEKSKHKRT--SRSIFCILRKK 84 (180)
T ss_pred CeEEEEEEec--cCccceeeccccEEEEEeccCCCc------eeeEEeeehhhhcCHhhcccccc--ceEEEEEEEcc
Confidence 5577778887 457788888 88999999754211 23456688889999998887774 77777777665
No 76
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=20.06 E-value=3.3e+02 Score=23.52 Aligned_cols=57 Identities=5% Similarity=-0.121 Sum_probs=32.5
Q ss_pred CCCCCceEEEe-CCeEEEEEEEeeecCCCeeeeEEEEEEeCCCCCCcCCcEEEecCCCEEEEEEeCCCC
Q psy16273 149 LWSAAEYSFKS-HTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216 (227)
Q Consensus 149 GF~pedI~V~v-~n~L~V~Gk~e~~~d~~~~~R~F~R~f~LP~~VD~~~I~AsLs~nGvLtI~lPk~~~ 216 (227)
-|.|..++|.. .+.+.|+|.-..--+++-. .+.-..-.+.-++ ++|.|.+.-=++.+
T Consensus 127 ~F~~~~i~v~~~~~~V~V~Gtlkt~vg~~~~----------~~~~k~Y~l~~~y-~~G~l~L~~f~ev~ 184 (188)
T PRK13726 127 AFYQTSVRVWPQYGRVDIRGVLKTWIGDSKP----------FTEIKHYILILKR-ENGVTWLDNFGETD 184 (188)
T ss_pred EEEeeeEEEccCCCEEEEEEEEEEEECCccc----------CchheEEEEEEEE-cCCEEEEEEEEecC
Confidence 45667888888 8888999975432221110 0111111245567 78888887765554
Done!