RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16273
(227 letters)
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 80.6 bits (200), Expect = 5e-20
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 163 VTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
+ V KHEE+ D V RE+ R + LP+G +P+S+ SSLS DGVLT+EAP
Sbjct: 32 LVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 67.2 bits (165), Expect = 8e-15
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 163 VTVHAKHE-EKSDSKSV-----YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPAL 216
V V KHE E+ D + YR ++R+F+LP+ +P+ +K+SL KDGVLTV P
Sbjct: 32 VLVKGKHEKEEEDDHGLRSERSYRSFSRKFVLPENADPDKVKASL-KDGVLTVTVPKLEP 90
Query: 217 GAP-EKLIPI 225
+ I I
Sbjct: 91 PEKKPRRIQI 100
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2.
Length = 86
Score = 60.2 bits (146), Expect = 3e-12
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
V + KHEEK D V R + R++ LP G +P ++ SSLS DG+LTVEAP+
Sbjct: 35 VEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVEAPI 86
>gnl|CDD|107233 cd06478, ACD_HspB4-5-6, Alpha-crystallin domain found in
alphaA-crystallin (HspB4), alphaB-crystallin (HspB5),
and the small heat shock protein (sHsp) HspB6, also
known as Hsp20. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 on the other hand is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. HspB5's functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Mutations in HspB4 have been associated with Autosomal
Dominant Congenital Cataract (ADCC). HspB6 (Hsp20) is
ubiquitous and is involved in diverse functions
including regulation of glucose transport and
contraction of smooth muscle, in platelet aggregation,
in cardioprotection, and in the prevention of apoptosis.
It interacts with the universal scaffolding and adaptor
protein 14-3-3, and also with the proapoptotic protein
Bax.
Length = 83
Score = 59.8 bits (145), Expect = 4e-12
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
V +H KHEE+ D + RE++R + LP G +P +I SSLS DGVLT+ P
Sbjct: 32 VEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 57.6 bits (140), Expect = 3e-11
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
Query: 163 VTVHAKHEEKSDSKS-------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
+T+ + EE+ + + Y ++R F LP+ +P+ IK+SL ++GVLT+ P
Sbjct: 32 LTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASL-ENGVLTITLP 87
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 54.9 bits (133), Expect = 2e-10
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 163 VTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
+T+ K EE+ + + Y E+ R F LP+ +PE K+SL ++GVL + P
Sbjct: 31 LTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASL-ENGVLEITLP 79
>gnl|CDD|107246 cd06498, ACD_alphaB-crystallin_HspB5, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaB-crystallin
(HspB5, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4
does not belong to this group. HspB5 shows increased
synthesis in response to stress. HspB5 is also expressed
constitutively in other tissues including brain, heart,
and type I and type IIa skeletal muscle fibers, and in
several cancers including gliomas, renal cell
carcinomas, basal-like and metaplastic breast
carcinomas, and head and neck cancer. Its functions
include effects on the apoptotic pathway and on
metastasis. Phosphorylation of HspB5 reduces its
oligomerization and anti-apoptotic activities. HspB5 is
protective in demyelinating disease such as multiple
sclerosis (MS), being a negative regulator of
inflammation. In early active MS lesions it is the most
abundant gene transcript and an autoantigen, the immune
response against it would disrupt its function and
worsen inflammation and demyelination. Given as therapy
for ongoing demyelinating disease it may counteract this
effect. It is an autoantigen in the pathogenesis of
various other inflammatory disorders including
Lens-associated uveitis (LAU), and Behcet's disease.
Mutations in HspB5 have been associated with diseases
including dominant cataract and desmin-related myopathy.
Length = 84
Score = 54.3 bits (130), Expect = 4e-10
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
+ +H KHEE+ D + RE+ R++ +P +P +I SSLS DGVLTV P
Sbjct: 32 IEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGP 82
>gnl|CDD|107231 cd06476, ACD_HspB2_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB2/heat
shock 27kDa protein 2 and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. HspB2 is preferentially and constitutively
expressed in skeletal muscle and heart. HspB2 shows
homooligomeric activity and forms aggregates in muscle
cytosol. Although its expression is not induced by heat
shock, it redistributes to the insoluble fraction in
response to heat shock. In the mouse heart, HspB2 plays
a role in maintaining energetic balance, by protecting
cardiac energetics during ischemia/reperfusion, and
allowing for increased work during acute inotropic
challenge. hHspB2 [previously also known as myotonic
dystrophy protein kinase (DMPK) binding protein (MKBP)]
is selectively up-regulated in skeletal muscles from
myotonic dystrophy patients. The ACD of hHspB2 binds the
DMPK kinase domain. In vitro, hHspB2 enhances the kinase
activity of DMPK and confers thermoresistance. The
hHspB2 gene lies less than 1kb from the 5 prime end of
the related alphaB (HspB4)-crystallin gene, with the
opposite transcription direction. These two genes may
share regulatory elements for their expression.
Length = 83
Score = 45.7 bits (108), Expect = 6e-07
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 165 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
V A+H ++ D V RE+ R ++LP +P +++SLS DG+L ++AP
Sbjct: 34 VSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAP 82
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone.
Length = 87
Score = 45.5 bits (108), Expect = 8e-07
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 163 VTVHAKHEEKSDSKS-----VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
+ V K E+K++ + Y+E+ RE LP+ +PE++ SLS G L + AP
Sbjct: 32 LVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRAP 86
>gnl|CDD|107245 cd06497, ACD_alphaA-crystallin_HspB4, Alpha-crystallin domain found
in the small heat shock protein (sHsp) alphaA-crystallin
(HspB4, 20kDa). sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Alpha crystallin, an
abundant protein in the mammalian lens, is a large (700
kDa) heteropolymer composed of HspB4 and HspB5,
generally in a molar ratio of HspB4:HspB5 of 3:1. Only
trace amounts of HspB4 are found in tissues other than
the lens. HspB5 does not belong to this group. Mutations
inHspB4 have been associated with Autosomal Dominant
Congenital Cataract (ADCC). The chaperone-like functions
of HspB4 are considered important for maintaining lens
transparency and preventing cataract.
Length = 86
Score = 44.2 bits (104), Expect = 2e-06
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
V +H KH E+ D + RE++R + LP + +I SLS DG+LT P
Sbjct: 35 VEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 44.7 bits (106), Expect = 4e-06
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 163 VTVHAKHEEKSDSKS--------VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP-- 212
+T+ + EE+ + + Y E+ R F LP+ +PE IK+ K+G+LTV P
Sbjct: 75 LTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY-KNGLLTVTLPKA 133
Query: 213 LPALGAPEKLIPI 225
P P++ I I
Sbjct: 134 EPEEKKPKR-IEI 145
>gnl|CDD|107235 cd06480, ACD_HspB8_like, Alpha-crystallin domain (ACD) found in
mammalian 21.6 KDa small heat shock protein (sHsp)
HspB8, also denoted as Hsp22 in humans, and similar
proteins. sHsps are molecular chaperones that suppress
protein aggregation and protect against cell stress, and
are generally active as large oligomers consisting of
multiple subunits. A chaperone complex formed of HspB8
and Bag3 stimulates degradation of protein complexes by
macroautophagy. HspB8 also forms complexes with Hsp27
(HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5),
Hsp20 (HspB6), and cvHsp (HspB7). These latter
interactions may depend on phosphorylation of the
respective partner sHsp. HspB8 may participate in the
regulation of cell proliferation, cardiac hypertrophy,
apoptosis, and carcinogenesis. Point mutations in HspB8
have been correlated with the development of several
congenital neurological diseases, including Charcot
Marie tooth disease and distal motor neuropathy type II.
Length = 91
Score = 38.8 bits (90), Expect = 2e-04
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
V V KHEE+ V + + ++ LP +P ++ +SLS +G+L +EAP
Sbjct: 40 VEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAPQ 91
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 33.6 bits (78), Expect = 0.015
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 12/59 (20%)
Query: 164 TVHAKHEEKSDSKS-----VYRE-----YNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
T+ AK +E D K + RE ++R F LP + E IK+ ++GVL + P
Sbjct: 36 TISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKY-ENGVLKITLP 92
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 32.7 bits (75), Expect = 0.027
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 167 AKHEEKSDSKSVYR---EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
+ ++ D V R + R F LP+ + + +K+ L +GVLTV P
Sbjct: 44 EEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLE-NGVLTVTVP 91
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. HspB7 is a
25-kDa protein, preferentially expressed in heart and
skeletal muscle. It binds the cytoskeleton protein
alpha-filamin (also known as actin-binding protein 280).
The expression of HspB7 is increased during rat muscle
aging. Its expression is also modulated in obesity
implicating this protein in this and related metabolic
disorders. As the human gene encoding HspB7 is mapped to
chromosome 1p36.23-p34.3 it is a positional candidate
for several dystrophies and myopathies.
Length = 81
Score = 32.2 bits (73), Expect = 0.042
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 159 SHTPVTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEA 211
S+ + VHA EK S +V + + LP+ +P S+ SSL +DG LT++A
Sbjct: 29 SNNQIEVHA---EKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKA 79
>gnl|CDD|107237 cd06482, ACD_HspB10, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB10, also
known as sperm outer dense fiber protein (ODFP), and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB10 occurs
exclusively in the axoneme of sperm cells and may have a
cytoskeletal role.
Length = 87
Score = 29.5 bits (66), Expect = 0.35
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 163 VTVHAKHEEKSDS----KSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
V V A+ E + D K Y +EF LP G + + + S V+ +E P
Sbjct: 33 VQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIETP 86
>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in
mammalian HspB3, also known as heat-shock protein
27-like protein (HSPL27, 17-kDa) and similar proteins.
sHsps are molecular chaperones that suppress protein
aggregation and protect against cell stress, and are
generally active as large oligomers consisting of
multiple subunits. HspB3 is expressed in adult skeletal
muscle, smooth muscle, and heart, and in several other
fetal tissues. In muscle cells HspB3 forms an
oligomeric 150 kDa complex with myotonic dystrophy
protein kinase-binding protein (MKBP/ HspB2), this
complex may comprise one of two independent muscle-cell
specific chaperone systems. The expression of HspB3 is
induced during muscle differentiation controlled by the
myogenic factor MyoD. HspB3 may also interact with Hsp22
(HspB8).
Length = 83
Score = 28.6 bits (64), Expect = 0.70
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 165 VHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVE 210
+ +H + D + R + R++ LP G + + + L DG+L VE
Sbjct: 34 IKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80
>gnl|CDD|240322 PTZ00232, PTZ00232, variable surface protein Vir27; Provisional.
Length = 363
Score = 28.7 bits (64), Expect = 2.5
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 45 ISYTSKKIRTAHTNSNCTQKAKQIIEEFQKL---SYLICSVGNSNNLLITHYGSTFY--Y 99
Y + ++ T H + C + K++I ++ + +Y C+ N + F
Sbjct: 142 KDYQNIRLSTLHAETTCDEHYKKVINKYINMYNDAYSDCNKINKKKYDCNKFSELFRNKL 201
Query: 100 FFRLQSFRA-QLDIGTHST 117
+ L S Q D GT S+
Sbjct: 202 YKELSSLSCKQSDPGTVSS 220
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 27.9 bits (62), Expect = 4.8
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 146 PFRLWSAAEYSFKSHTPVTVHAKHEEKSDSKSVYREYNRE----FLLPKGTNPESIKSSL 201
PF + Y KS VTV + K+ + E E +LLP G +PE+ +S L
Sbjct: 242 PFSGFQNPTYILKSSRSVTVE---QIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYL 298
Query: 202 ---SKDG 205
++DG
Sbjct: 299 RMRNRDG 305
>gnl|CDD|233002 TIGR00510, lipA, lipoate synthase. This enzyme is an iron-sulfur
protein. It is localized to mitochondria in yeast and
Arabidopsis. It generates lipoic acid, a thiol
antioxidant that is linked to a specific Lys as
prosthetic group for the pyruvate and
alpha-ketoglutarate dehydrogenase complexes and the
glycine-cleavage system. The family shows strong
sequence conservation [Biosynthesis of cofactors,
prosthetic groups, and carriers, Lipoate].
Length = 302
Score = 27.1 bits (60), Expect = 7.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 188 LPKGTNPESIKSSLSKDGVLTV--EAPLPALG 217
LP GT IK+++ G+ TV EA P L
Sbjct: 25 LPLGTVIAQIKNTMKNKGLHTVCEEASCPNLT 56
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.126 0.365
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,603,671
Number of extensions: 906162
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 26
Length of query: 227
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 134
Effective length of database: 6,812,680
Effective search space: 912899120
Effective search space used: 912899120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)