RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16273
(227 letters)
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 93.5 bits (232), Expect = 4e-24
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SSLS DGVLTV P + PE+
Sbjct: 98 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPER 157
Query: 222 LIPIAH 227
IPI
Sbjct: 158 TIPITR 163
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 81.3 bits (201), Expect = 2e-20
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
+ VH KHEE+ D + RE++R++ +P +P +I SS+S DGVLTV P + PE+
Sbjct: 31 IEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPER 90
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 80.2 bits (198), Expect = 6e-20
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEK 221
V VHA+HEE+ D + RE++R + LP G +P ++ S+LS +GVL+++A + A
Sbjct: 36 VEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLP 95
Query: 222 LIPIA 226
P A
Sbjct: 96 SPPAA 100
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 78.8 bits (194), Expect = 3e-19
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 163 VTVHAKHEEKSDSKS-VYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAP-- 219
V +H KH E+ D + RE++R + LP + ++ SLS DG+LT P G
Sbjct: 37 VEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAG 96
Query: 220 --EKLIPIA 226
E+ IP++
Sbjct: 97 HSERAIPVS 105
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 76.6 bits (189), Expect = 1e-18
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 163 VTVHAKHEEKSDSK-SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214
V + KH + D + R + R++ LP G +P + SSLS +G LTVEAP+P
Sbjct: 32 VEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAPMP 84
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 73.3 bits (179), Expect = 1e-15
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 163 VTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPA 215
+ V A+ ++ R LP + I+++++ D VL +EAP+
Sbjct: 137 LVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNE 189
Score = 73.3 bits (179), Expect = 1e-15
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 163 VTVHAKHEEKSDSK----SVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLP 214
V VH ++ ++ S +RE+ + F+ P+ + ++ + DG++ VEAPL
Sbjct: 259 VYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIV-DGLMVVEAPLF 313
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 44.2 bits (105), Expect = 4e-06
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 168 KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE- 220
E++ + +R ++ R F L + E +K+ L ++GVLTV P + PE
Sbjct: 86 TKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEV 144
Query: 221 KLIPIA 226
K I I+
Sbjct: 145 KAIQIS 150
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 44.0 bits (104), Expect = 6e-06
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 163 VTVHAKH---EEKSDSKSVYRE------YNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
+ + AK + +Y E R LP E+ + ++GVL+V P
Sbjct: 91 LEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF-ENGVLSVILPK 149
Query: 214 PALGAPEKLIPI 225
+ +K I I
Sbjct: 150 AE-SSIKKGINI 160
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 42.1 bits (100), Expect = 1e-05
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 163 VTVHA--KHEEKSDSKSVYR------EYNREFLLPKGTNPESIKSSLSKDGVLTVEAP 212
+++ K E ++++ R ++R F LP + + I ++ ++GVL + P
Sbjct: 39 LSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG-RNGVLEIRIP 95
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 41.4 bits (98), Expect = 3e-05
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 163 VTVHA-KHEEKSDSKSVYREYN---REFLLPKGTNPES-IKSSLSKDGVLTVEAP 212
+ + A + + K + + + LP ++ I ++GVLT+ P
Sbjct: 60 LIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKY-ENGVLTIRIP 113
Score = 26.8 bits (60), Expect = 3.0
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 188 LPKGTNPESIKSSLSKDGVLTVEA 211
L G N E IK+ +S L +EA
Sbjct: 42 LA-GFNKEKIKARVSGQNELIIEA 64
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine
type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET:
ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Length = 453
Score = 31.0 bits (70), Expect = 0.33
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 154 EYSFKSHTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
E SF + V + +K E++ + K Y E + +LP + + K + V A
Sbjct: 331 ERSFDQYKYVKILSKGEQRINGKKYYVENDLYDVLPSDFSKKDYKLVVEDG---KVHADY 387
Query: 214 PALGAPEKLIPI 225
P + P
Sbjct: 388 PREFINKDYGPP 399
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.43
Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 32/170 (18%)
Query: 59 SNCTQKAKQIIEEFQKLSYLICSVGNSNNLLITHYGSTFY-------YFFRLQSFRAQL- 110
NC + ++E QKL Y I S + ++ + + + + L
Sbjct: 190 KNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 111 ---DIGTHSTFTYSTETGLSLVDANCSTSLWAKSKSHYPFRLWSAAEYSFKSHTPVTVHA 167
++ + + + + +C L + K SAA +H + H+
Sbjct: 249 VLLNV-------QNAKA-WNAFNLSCKILLTTRFKQ--VTDFLSAATT---THISLDHHS 295
Query: 168 KHEEKSDSKSVYREY--NREFLLP---KGTNPESIK--SSLSKDGVLTVE 210
+ KS+ +Y R LP TNP + + +DG+ T +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
>1tvf_A PBP4, penicillin binding protein 4; structural genomics, nysgxrc
target, SAV0642, PSI, protein structure initiative;
2.00A {Staphylococcus aureus} SCOP: b.105.1.2 e.3.1.1
Length = 369
Score = 29.0 bits (65), Expect = 1.2
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 154 EYSFKSHTPVTVHAKHEEKSDSKSVYREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPL 213
E SF + V + +K E++ + K Y E + +LP + + K + V A
Sbjct: 295 ERSFDQYKYVKILSKGEQRINGKKYYVENDLYDVLPSDFSKKDYKLVVEDG---KVHADY 351
Query: 214 PALGAPEKLIP 224
P + P
Sbjct: 352 PREFINKDYGP 362
>1oao_C CODH, carbon monoxide dehydrogenase/acetyl-COA synthase alpha;
oxidoreductase-transferase complex, electron transfer,
oxidoreductase; 1.90A {Moorella thermoacetica} SCOP:
e.26.1.3 PDB: 2z8y_M 3i01_M 3i04_M 1mjg_M 1ru3_A 3git_A
3s2x_A
Length = 729
Score = 27.5 bits (61), Expect = 4.4
Identities = 2/27 (7%), Positives = 13/27 (48%)
Query: 59 SNCTQKAKQIIEEFQKLSYLICSVGNS 85
+ ++ +I++E + +++ +
Sbjct: 163 AKDSKALAKIVKELMGMGFMLFICDEA 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 7.3
Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 92/213 (43%)
Query: 3 QSQSSYSLVGSVSALE-CITSDCGHVAENTSCEQLVLNHVS--ELISYTSKKIRTAHTNS 59
+ +Y ++L I D E L +++++ ++ Y + TNS
Sbjct: 309 RCYEAYP----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY----VN--KTNS 358
Query: 60 NCTQKAKQIIEEFQKLSYLICSVGNS-NNLLITHYGSTFYYF-FRLQSFRA-----Q--- 109
+ KQ+ + S+ N NL+++ + Y L+ +A Q
Sbjct: 359 H-LPAGKQV--------EI--SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 110 -------------LDIGT--HS-------------------TFT--------YSTETG-- 125
L + + HS +F Y T G
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 126 ---------LSLVDANCSTSL-WAK----SKSH 144
+VD + W +H
Sbjct: 468 LRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.126 0.365
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,121,136
Number of extensions: 161568
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 17
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)