RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16273
         (227 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 36.3 bits (83), Expect = 9e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 179 YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPE-KLIPIA 226
             ++ R F L +    E +K+ L ++GVLTV  P   +  PE K I I+
Sbjct: 102 SGKFVRRFRLLEDAKVEEVKAGL-ENGVLTVTVPKAEVKKPEVKAIQIS 149


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 179 YREYNREFLLPKGTNPESIKSSLSKDGVLTVEAPLPALGAPEKLIPI 225
             E  R   LP     E+  +   ++GVL+V  P        K I I
Sbjct: 70  EEEIYRTIKLPATVKEENASAKF-ENGVLSVILPKAESSIK-KGINI 114


>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 52

 Score = 25.7 bits (57), Expect = 0.81
 Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 172 KSDSKSVYREYNREFLLPKG----TNPESIK 198
           K + K+V   Y   FL  +G      P ++K
Sbjct: 15  KGEIKNVADGYANNFLFKQGLAIEATPANLK 45


>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 179

 Score = 26.0 bits (57), Expect = 3.5
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 177 SVYREYNREFLLPKGTNPESIKSSLSKDGVL----TVEAPLPALGAPEKLI 223
           +++   + +  L   TN E I+  L+  GV       +  L A    E +I
Sbjct: 4   TIFSVKDPQNSLWHSTNAEEIQQQLNAKGVRFERWQADRDLGAAPTAETVI 54


>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score = 23.9 bits (52), Expect = 7.8
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 65  AKQIIEEFQKL--SYLICSVGNSNNLLITHYGSTFYYFF 101
           A  I +EF K       C VG +    +TH    F YF+
Sbjct: 37  AAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFY 75


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 767,121
Number of extensions: 31950
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 6
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)