Query psy16276
Match_columns 215
No_of_seqs 166 out of 611
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 17:16:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00018 histone H3; Provision 100.0 8.3E-47 1.8E-51 308.4 6.8 124 1-145 1-125 (136)
2 PLN00121 histone H3; Provision 100.0 1.6E-46 3.5E-51 306.7 6.4 124 1-145 1-125 (136)
3 PLN00161 histone H3; Provision 100.0 1.7E-45 3.7E-50 300.4 5.3 117 1-145 1-119 (135)
4 KOG1745|consensus 100.0 1.3E-43 2.8E-48 290.0 7.4 126 1-147 1-128 (137)
5 smart00428 H3 Histone H3. 100.0 2.8E-37 6.1E-42 242.9 3.2 90 35-145 2-94 (105)
6 PLN00160 histone H3; Provision 100.0 2.2E-36 4.8E-41 235.3 3.8 83 42-145 1-85 (97)
7 COG2036 HHT1 Histones H3 and H 99.6 4.6E-16 9.9E-21 120.3 2.2 70 44-138 1-71 (91)
8 PF00125 Histone: Core histone 99.0 1.1E-10 2.5E-15 83.6 0.1 66 58-128 1-68 (75)
9 cd07981 TAF12 TATA Binding Pro 96.5 0.0013 2.8E-08 48.3 1.7 53 67-128 6-60 (72)
10 cd00076 H4 Histone H4, one of 79.4 0.71 1.5E-05 35.6 0.4 59 63-131 14-74 (85)
11 PLN00035 histone H4; Provision 75.2 1.2 2.5E-05 35.7 0.6 60 63-132 30-91 (103)
12 KOG1142|consensus 73.0 3.6 7.9E-05 37.7 3.2 86 54-157 146-235 (258)
13 PTZ00015 histone H4; Provision 72.6 1.4 3E-05 35.2 0.4 60 62-131 30-91 (102)
14 PF03847 TFIID_20kDa: Transcri 72.2 1.7 3.6E-05 32.1 0.8 52 68-128 5-58 (68)
15 smart00417 H4 Histone H4. 71.3 2.9 6.2E-05 31.6 1.8 54 62-124 13-68 (74)
16 KOG0870|consensus 69.7 3 6.4E-05 36.3 1.8 40 59-103 7-46 (172)
17 smart00803 TAF TATA box bindin 66.0 2.7 5.8E-05 30.5 0.7 55 63-127 3-59 (65)
18 KOG1745|consensus 63.3 8.4 0.00018 32.4 3.2 32 89-128 93-126 (137)
19 PF00808 CBFD_NFYB_HMF: Histon 62.8 6.4 0.00014 27.6 2.1 37 66-103 3-39 (65)
20 cd07979 TAF9 TATA Binding Prot 56.1 8.1 0.00018 30.9 1.9 60 69-134 4-65 (117)
21 PLN00160 histone H3; Provision 44.1 7.4 0.00016 30.9 -0.0 22 105-128 64-85 (97)
22 smart00576 BTP Bromodomain tra 43.3 17 0.00038 26.6 1.8 37 84-124 23-61 (77)
23 PF15630 CENP-S: Kinetochore c 41.7 13 0.00028 28.0 1.0 58 66-128 5-66 (76)
24 smart00428 H3 Histone H3. 40.4 6.7 0.00015 31.4 -0.8 21 107-128 74-94 (105)
25 PLN00121 histone H3; Provision 38.8 11 0.00024 31.5 0.2 22 105-128 104-125 (136)
26 PTZ00018 histone H3; Provision 38.3 12 0.00026 31.4 0.3 22 105-128 104-125 (136)
27 PF15511 CENP-T: Centromere ki 33.2 13 0.00028 35.5 -0.2 48 71-138 356-409 (414)
28 PLN00161 histone H3; Provision 32.0 13 0.00029 31.1 -0.3 23 105-129 98-120 (135)
29 PF10346 Con-6: Conidiation pr 26.1 27 0.00059 23.3 0.4 9 171-179 13-21 (36)
No 1
>PTZ00018 histone H3; Provisional
Probab=100.00 E-value=8.3e-47 Score=308.43 Aligned_cols=124 Identities=77% Similarity=1.084 Sum_probs=119.3
Q ss_pred CCCcccccccCCCCCCCCchhhhhhhccCCCCCCCCCCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc
Q psy16276 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (215)
Q Consensus 1 MARTKqtArKstggkaPRKqlatkaarKs~p~~g~~kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~ 80 (215)
||||||++++++|+++|+++.++++++++.+.+++.++++||+||++||+|||+||+||+|||+|+||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCCC
Q psy16276 81 TDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKTF 145 (215)
Q Consensus 81 ~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~~ 145 (215)
+++|||++||+|||||+| +| | |++|||+ +||+|++|+| +|+++.
T Consensus 81 ~~~rf~~~al~aLQeaaE---~y-L----------------v~lfed~~lca~HakRVT-l~~kD~ 125 (136)
T PTZ00018 81 TDLRFQSSAVLALQEAAE---AY-L----------------VGLFEDTNLCAIHAKRVT-IMPKDI 125 (136)
T ss_pred CcceeeHHHHHHHHHHHH---HH-H----------------HHHhhhhHHHHHhhccee-cchhhH
Confidence 999999999999999999 99 9 9999998 9999999988 888765
No 2
>PLN00121 histone H3; Provisional
Probab=100.00 E-value=1.6e-46 Score=306.72 Aligned_cols=124 Identities=77% Similarity=1.088 Sum_probs=119.5
Q ss_pred CCCcccccccCCCCCCCCchhhhhhhccCCCCCCCCCCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc
Q psy16276 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (215)
Q Consensus 1 MARTKqtArKstggkaPRKqlatkaarKs~p~~g~~kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~ 80 (215)
||||||++++++||++|+++.++++++++++..++.+++|||+||++||+|||+||+||+|||||+||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PLN00121 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhC
Confidence 99999999999999999999999988888888899999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCCC
Q psy16276 81 TDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKTF 145 (215)
Q Consensus 81 ~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~~ 145 (215)
+++|||++||.|||||+| +| | |++|||. +|++|++|+| +|+++.
T Consensus 81 ~~~Rf~~~Al~ALQeaaE---~y-L----------------v~lfed~~lca~HakRVT-l~~kD~ 125 (136)
T PLN00121 81 TDLRFQSSAVLALQEAAE---AY-L----------------VGLFEDTNLCAIHAKRVT-IMPKDI 125 (136)
T ss_pred ccceeeHHHHHHHHHHHH---HH-H----------------HHHHhhhHHHHHHhccee-cchhhH
Confidence 999999999999999999 99 9 9999998 9999999988 888765
No 3
>PLN00161 histone H3; Provisional
Probab=100.00 E-value=1.7e-45 Score=300.44 Aligned_cols=117 Identities=50% Similarity=0.744 Sum_probs=107.8
Q ss_pred CCCcccccccCCCCCCCCchhhhhhhccCCCCCCCCCCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc
Q psy16276 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (215)
Q Consensus 1 MARTKqtArKstggkaPRKqlatkaarKs~p~~g~~kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~ 80 (215)
||||||+ +++++|+.|+|++..+ ...++++++||||||||||+|||+||+||+|||||+||+||||||++++.
T Consensus 1 mar~k~~-~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~ 73 (135)
T PLN00161 1 MARRLQG-KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEML 73 (135)
T ss_pred CCccccc-ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcC
Confidence 9999999 7888999998877653 24577899999999999999999999999999999999999999999996
Q ss_pred -ccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCCC
Q psy16276 81 -TDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKTF 145 (215)
Q Consensus 81 -~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~~ 145 (215)
+++|||++||+|||||+| +| | |++|||+ +||+||+|+| +|+++.
T Consensus 74 ~~~~Rfq~~Al~ALQEAsE---ay-L----------------V~lFeda~lcaiHAkRVT-lm~kDm 119 (135)
T PLN00161 74 REPFRWTAEALLALQEATE---DF-L----------------VHLFEDCNLCAIHAKRVT-IMPKDM 119 (135)
T ss_pred CCCcEeeHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHhcCcc-cchhhH
Confidence 589999999999999999 99 9 9999998 9999999988 888765
No 4
>KOG1745|consensus
Probab=100.00 E-value=1.3e-43 Score=290.00 Aligned_cols=126 Identities=75% Similarity=1.049 Sum_probs=118.7
Q ss_pred CCCcccccccCCCCCCCCchhhhhhhccC-CCCCCCCCCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhc
Q psy16276 1 MARTKQTARKSTGGKAPRKQLATKAARKS-APSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF 79 (215)
Q Consensus 1 MARTKqtArKstggkaPRKqlatkaarKs-~p~~g~~kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~ 79 (215)
|+|++++++++++|++|++..+.+..++. .+..+..+|++||+||++||+|||+||+||+|||+|+|||||||||+|+|
T Consensus 1 m~r~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f 80 (137)
T KOG1745|consen 1 MARTKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDF 80 (137)
T ss_pred CCCCCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcc
Confidence 89999999999999999999999998876 45567788999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCCCCC
Q psy16276 80 KTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKTFSW 147 (215)
Q Consensus 80 ~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~~~~ 147 (215)
.+|+|||+.||.|||||+| || | |+||||+ +||||||||| +|||+-.+
T Consensus 81 ~~dLrfqs~Ai~ALQeA~E---ay-L----------------v~LfEdtnlcAihAkRVT-impkdiQl 128 (137)
T KOG1745|consen 81 KTDLRFQSSAIAALQEAAE---AY-L----------------VGLFEDTNLCAIHAKRVT-IMPKDIQL 128 (137)
T ss_pred cccceehHHHHHHHHHHHH---HH-H----------------HHhccccchhhhccceeE-ecccceeh
Confidence 9999999999999999999 99 9 9999998 9999999988 99986543
No 5
>smart00428 H3 Histone H3.
Probab=100.00 E-value=2.8e-37 Score=242.88 Aligned_cols=90 Identities=60% Similarity=0.867 Sum_probs=85.0
Q ss_pred CCCCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhccc--cccchHHHHHHHHHHHHhhcccccCCCchHH
Q psy16276 35 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSAAIGALQYWIENSGQFDLNPSSSLK 112 (215)
Q Consensus 35 ~~kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~~--~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~ 112 (215)
+++++||||||++||+|||+||+||+|||||+||+||||||++++.+ ++|||++|+.|||||+| +| |
T Consensus 2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE---~y-l------- 70 (105)
T smart00428 2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAE---AY-L------- 70 (105)
T ss_pred CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHH---HH-H-------
Confidence 56889999999999999999999999999999999999999999987 99999999999999999 99 9
Q ss_pred hhhcCCceeecccCCc-ccccCCCcCCCCCCCCC
Q psy16276 113 IKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKTF 145 (215)
Q Consensus 113 ~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~~ 145 (215)
|++|||+ +||+||+|+| +++++.
T Consensus 71 ---------v~lfeda~~~a~HAkRvT-l~~kDi 94 (105)
T smart00428 71 ---------VGLFEDTNLLAIHAKRVT-IMPKDI 94 (105)
T ss_pred ---------HHHHHHHHHHHHHhCCcc-CcHhhH
Confidence 9999998 8999999988 777654
No 6
>PLN00160 histone H3; Provisional
Probab=100.00 E-value=2.2e-36 Score=235.25 Aligned_cols=83 Identities=47% Similarity=0.725 Sum_probs=79.1
Q ss_pred cCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc-ccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCce
Q psy16276 42 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPT 120 (215)
Q Consensus 42 ~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~-~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~v 120 (215)
|||||+||+|||+||+||+|||||+||+||||||++++. +++|||++||.|||||+| +| |
T Consensus 1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsE---ay-L--------------- 61 (97)
T PLN00160 1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAE---AH-L--------------- 61 (97)
T ss_pred CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHH---HH-H---------------
Confidence 789999999999999999999999999999999999996 569999999999999999 99 9
Q ss_pred eecccCCc-ccccCCCcCCCCCCCCC
Q psy16276 121 WLDYLKTP-TCALSMPNVSPLCPKTF 145 (215)
Q Consensus 121 tV~lfeD~-lCAihakr~s~~~~~~~ 145 (215)
|++|||+ +||+||+|+| +|+|+.
T Consensus 62 -v~lfed~~lca~HakRVT-l~~kD~ 85 (97)
T PLN00160 62 -VGLFEDSNLCAIHGKRVT-IMPKDM 85 (97)
T ss_pred -HHHHhhhHHHHHHhcccc-cchhhH
Confidence 9999998 9999999988 888764
No 7
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.58 E-value=4.6e-16 Score=120.25 Aligned_cols=70 Identities=39% Similarity=0.615 Sum_probs=63.9
Q ss_pred CCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeec
Q psy16276 44 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLD 123 (215)
Q Consensus 44 PGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~ 123 (215)
||+++++|||+||++++++||++||+|++|+...+ ||+.+|+++|||+.| .| + ++
T Consensus 1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e---~~-~----------------~~ 55 (91)
T COG2036 1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALE---EY-L----------------EE 55 (91)
T ss_pred CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHH---HH-H----------------HH
Confidence 68999999999999999999999999999999886 999999999999999 99 7 77
Q ss_pred ccCCc-ccccCCCcCC
Q psy16276 124 YLKTP-TCALSMPNVS 138 (215)
Q Consensus 124 lfeD~-lCAihakr~s 138 (215)
+++|+ .||.|++|.|
T Consensus 56 i~~~A~~~A~ha~RKT 71 (91)
T COG2036 56 IAEDAVELAEHAKRKT 71 (91)
T ss_pred HHHHHHHHHHHcCCCe
Confidence 77776 7777777766
No 8
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.96 E-value=1.1e-10 Score=83.59 Aligned_cols=66 Identities=32% Similarity=0.426 Sum_probs=55.7
Q ss_pred hhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCc
Q psy16276 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 58 STeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
+|..+|+++||.|++|||..++..++||+++|+.+||+++| .| +. |+.+..++.|.|+.||.. +|.
T Consensus 1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E---~~-~~~il~~A~~~a~~~kR~tI~~-~DI 68 (75)
T PF00125_consen 1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLE---YL-LVEILEEAGNLARHAKRKTITP-RDI 68 (75)
T ss_dssp HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTBSEEGH-HHH
T ss_pred CcccccCceEEeeeeehhhcccccccccccccchhhhhhhh---hh-hhhhhhHHHHHHhhcCCcEecH-HHH
Confidence 46789999999999999999988889999999999999999 88 74 677777777777777665 554
No 9
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=96.53 E-value=0.0013 Score=48.27 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCc
Q psy16276 67 PFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 67 PFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
--+.||++| ....|++.+|..+||+.+| .| +. ++.++.++.|+++.||.. +|.
T Consensus 6 ~l~~lv~~i----d~~~~~~~da~~~l~~~~e---~f-v~~v~~~a~~lAkHr~~~tv~~-~Di 60 (72)
T cd07981 6 KLQELLKEI----DPREQLDPDVEELLLEIAD---DF-VDDVVEDACRLAKHRKSDTLEV-KDV 60 (72)
T ss_pred HHHHHHHhh----CCCCCcCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCCCCH-HHH
Confidence 344555554 4568999999999999999 99 75 777777777777777776 665
No 10
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=79.42 E-value=0.71 Score=35.57 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=44.1
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccc
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCA 131 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCA 131 (215)
|++.|..||+|.- .--|+...+..++.++.| .| |. -.+++....|.+.-||.. +|..+|
T Consensus 14 i~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~---~~-l~~I~~dav~ya~Ha~RKTVt~-~DV~~a 74 (85)
T cd00076 14 ITKPAIRRLARRG-----GVKRISGGVYDEVRNVLK---SY-LEDVIRDAVTYTEHAKRKTVTA-MDVVYA 74 (85)
T ss_pred CCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCcCcH-HHHHHH
Confidence 8999999999742 356899999999999999 99 74 556666666666666665 554333
No 11
>PLN00035 histone H4; Provisional
Probab=75.25 E-value=1.2 Score=35.75 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=47.2
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCccccc
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCAL 132 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAi 132 (215)
|++.|..||.|.- .--|...+|..+|.++.| .| |. ..+++....|.+.-||.. +|..+|+
T Consensus 30 ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle---~~-l~~I~~dav~ya~HA~RKTV~~-~DV~~Al 91 (103)
T PLN00035 30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLK---IF-LENVIRDAVTYTEHARRKTVTA-MDVVYAL 91 (103)
T ss_pred CCHHHHHHHHHHc-----CcccchHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCcCcH-HHHHHHH
Confidence 8999999998743 346899999999999999 99 75 667777778887777776 6654444
No 12
>KOG1142|consensus
Probab=72.98 E-value=3.6 Score=37.74 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=63.1
Q ss_pred hhhchhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC----CCchHHhhhcCCceeecccCCcc
Q psy16276 54 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN----PSSSLKIKKHRKPTWLDYLKTPT 129 (215)
Q Consensus 54 ryQkSTeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~----f~~s~~~~~h~k~vtV~lfeD~l 129 (215)
.++-+++.++-|--..-||++|- .+--.-.++-+-|.|-|+ +| ++ |.| .++.|||.=||+. .|..
T Consensus 146 ~~~~~~~~il~k~kl~dLvqqId----~~~~LD~dVedlLleiAD---dF-V~sii~~sC--~LAKHRKsdtlEv-rDIq 214 (258)
T KOG1142|consen 146 QDEPGNNPILSKRKLDDLVQQID----GTTKLDDDVEDLLLEIAD---DF-VSSIIHRSC--KLAKHRKSDTVEV-RDIQ 214 (258)
T ss_pred cccCCCCccccccchhHHHHhhc----CcccccHHHHHHHHHHHH---HH-HHHHHHHHH--HHHHhcccCccch-hhee
Confidence 57778888999988899998883 334455788899999999 99 87 666 7899999988887 6653
Q ss_pred cccCCCcCCCCCCCCCCCCccccccccC
Q psy16276 130 CALSMPNVSPLCPKTFSWPDVSEESVLK 157 (215)
Q Consensus 130 CAihakr~s~~~~~~~~~~~~s~e~~~~ 157 (215)
+|-+|.-+.-. |+.+.++.-+
T Consensus 215 --LhLEr~~Nm~i-----Pgf~sd~~~~ 235 (258)
T KOG1142|consen 215 --LHLERNFNMEI-----PGFSSDEKRS 235 (258)
T ss_pred --eeeeccccccC-----CCcccccccc
Confidence 45566554433 6666555543
No 13
>PTZ00015 histone H4; Provisional
Probab=72.58 E-value=1.4 Score=35.17 Aligned_cols=60 Identities=17% Similarity=0.079 Sum_probs=45.4
Q ss_pred hhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccc
Q psy16276 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCA 131 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCA 131 (215)
-|++.|..||+|.- .--|....|...+.++.| .| |. ..+++..+.|.+.-||.. +|..+|
T Consensus 30 gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle---~~-l~~I~rdav~~aeHA~RKTVt~-~DV~~A 91 (102)
T PTZ00015 30 GITKGAIRRLARRG-----GVKRISGDIYEEVRGVLK---AF-LENVVRDSTAYTEYARRKTVTA-MDVVYA 91 (102)
T ss_pred CCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCcccH-HHHHHH
Confidence 38999999998742 346888999999999999 89 75 666777777777777766 665444
No 14
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=72.24 E-value=1.7 Score=32.06 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCc
Q psy16276 68 FQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 68 FqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
++.||++| .....+..++.++|.+-++ .| +. .+.|..++.||+.=|+++ +|.
T Consensus 5 l~~Lv~~i----Dp~~~ld~~vee~Ll~lad---dF-v~~v~~~ac~lAKhR~s~tle~-~Dv 58 (68)
T PF03847_consen 5 LQELVKQI----DPNEKLDPDVEELLLELAD---DF-VDDVVSFACRLAKHRKSSTLEV-KDV 58 (68)
T ss_dssp HHHHHHCC-----SS----HHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTT-SEE-H-HHH
T ss_pred HHHHHHHc----CCCCCCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHhccCCCCCCH-HHH
Confidence 44555544 6778999999999999999 99 87 677778999999988887 554
No 15
>smart00417 H4 Histone H4.
Probab=71.34 E-value=2.9 Score=31.58 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=37.9
Q ss_pred hhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecc
Q psy16276 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDY 124 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~l 124 (215)
-|++.|..||+|. ..--|+...+...|.++.| .| |. ..+++....|.+.-||..
T Consensus 13 gI~k~~IrRLaRr-----~GvkRIS~~~y~elr~vle---~~-l~~I~rdav~~a~ha~RKTV~~ 68 (74)
T smart00417 13 GITKPAIRRLARR-----GGVKRISGLIYDETRNVLK---SF-LENVVRDAVTYTEHARRKTVTA 68 (74)
T ss_pred CCCHHHHHHHHHH-----cCcchhhHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCcccH
Confidence 3899999999873 2346889999999999999 99 73 444444444544444443
No 16
>KOG0870|consensus
Probab=69.67 E-value=3 Score=36.31 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=36.2
Q ss_pred hhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc
Q psy16276 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQF 103 (215)
Q Consensus 59 TeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay 103 (215)
-+|.+|++-..|||+|..++. +.-.+.+|+.|+++||- .|
T Consensus 7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAt---VF 46 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAAT---VF 46 (172)
T ss_pred HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHH---HH
Confidence 368899999999999999877 78899999999999999 77
No 17
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=66.04 E-value=2.7 Score=30.53 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=37.8
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCC
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKT 127 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD 127 (215)
+|+.|..|+.+ ..+-. |...+|..+|.+..| .| +. .+.+++.+.|.|+-||.. +|
T Consensus 3 ~p~~~i~ria~----~~Gi~-ris~~a~~~l~~~~e---~r-l~~i~~~A~k~~~hakRktlt~-~D 59 (65)
T smart00803 3 LPKETIKDVAE----SLGIG-NLSDEAAKLLAEDVE---YR-IKEIVQEALKFMRHSKRTTLTT-SD 59 (65)
T ss_pred CCHHHHHHHHH----HCCCc-cccHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHhCCCeecH-HH
Confidence 45566665554 33333 788899999999999 77 64 666677777777766655 44
No 18
>KOG1745|consensus
Probab=63.28 E-value=8.4 Score=32.45 Aligned_cols=32 Identities=16% Similarity=-0.060 Sum_probs=25.8
Q ss_pred HHHHHHHH--HHhhcccccCCCchHHhhhcCCceeecccCCc
Q psy16276 89 AIGALQYW--IENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 89 AL~ALQEA--aE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
||...-|| .+ | ||++.+.+.|.|+|||-. .|+
T Consensus 93 ALQeA~EayLv~------L-fEdtnlcAihAkRVTimp-kdi 126 (137)
T KOG1745|consen 93 ALQEAAEAYLVG------L-FEDTNLCAIHAKRVTIMP-KDI 126 (137)
T ss_pred HHHHHHHHHHHH------h-ccccchhhhccceeEecc-cce
Confidence 44444466 67 8 899999999999999988 886
No 19
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=62.85 E-value=6.4 Score=27.56 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc
Q psy16276 66 LPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQF 103 (215)
Q Consensus 66 lPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay 103 (215)
+|..++ +.|...-....+...+|+.+++.|+|+-+.|
T Consensus 3 lP~a~v-kri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~ 39 (65)
T PF00808_consen 3 LPLARV-KRIMKSDPDVMRVSKEAVEAIAKAAEEFIQY 39 (65)
T ss_dssp S-HHHH-HHHHHHTSTTSEE-HHHHHHHHHHHHHHHHH
T ss_pred CChHHH-HHHhccCCCccchhHHHHHHHHHHHHHHHHH
Confidence 444443 3344444566789999999999999944444
No 20
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=56.06 E-value=8.1 Score=30.93 Aligned_cols=60 Identities=12% Similarity=0.168 Sum_probs=47.0
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccccCC
Q psy16276 69 QRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCALSM 134 (215)
Q Consensus 69 qRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAiha 134 (215)
.++|..|..+.+ .-+++..++..|-|-++ .| .+ ..++...+.|.+.-||+. +|...|+..
T Consensus 4 ~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~---ry-~~~il~dA~~~a~hA~r~tV~~-eDV~lAi~~ 65 (117)
T cd07979 4 ARVIAAILKSMG-ITEYEPRVINQLLEFAY---RY-TTDVLDDAKVYSEHAGKANIDA-DDVKLAIQS 65 (117)
T ss_pred HHHHHHHHHHCC-CCccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHH
Confidence 567777877653 34899999999999999 88 54 777777888888888888 887666655
No 21
>PLN00160 histone H3; Provisional
Probab=44.06 E-value=7.4 Score=30.85 Aligned_cols=22 Identities=23% Similarity=-0.062 Sum_probs=19.5
Q ss_pred cCCCchHHhhhcCCceeecccCCc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
| ||++++.+.|+|.||+.. +|+
T Consensus 64 l-fed~~lca~HakRVTl~~-kD~ 85 (97)
T PLN00160 64 L-FEDSNLCAIHGKRVTIMP-KDM 85 (97)
T ss_pred H-HhhhHHHHHHhcccccch-hhH
Confidence 5 788889999999999988 887
No 22
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=43.25 E-value=17 Score=26.56 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecc
Q psy16276 84 RFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDY 124 (215)
Q Consensus 84 RfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~l 124 (215)
+.+.+|+++|.+..| .| +. =+.+...+.|..+.++++
T Consensus 23 ~~~~sale~ltdi~~---~y-l~~l~~~~~~~a~~agR~~~~~ 61 (77)
T smart00576 23 SFQESALETLTDILQ---SY-IQELGRTAHSYAELAGRTEPNL 61 (77)
T ss_pred ccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCCCCH
Confidence 789999999999999 99 63 222333555655555554
No 23
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=41.70 E-value=13 Score=28.01 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=35.4
Q ss_pred chhHHHHHHHHHhc--cccccchHHHHHHHHHHHHhhcccccC-CCch-HHhhhcCCceeecccCCc
Q psy16276 66 LPFQRLVREIAQDF--KTDLRFQSAAIGALQYWIENSGQFDLN-PSSS-LKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 66 lPFqRLVREIaq~~--~~~lRfqssAL~ALQEAaE~~~ay~L~-f~~s-~~~~~h~k~vtV~lfeD~ 128 (215)
.-++--|-.|+++- ..+..++...+.||-|-+= .| ++ +... -+.+.|.++.||+. +|.
T Consensus 5 aal~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~---~q-~~~~a~DLe~FAkHA~R~tI~~-dDV 66 (76)
T PF15630_consen 5 AALWYTVGKIVEEEAKEKGVEVSPQFIAALTELVY---KQ-LENLAKDLEAFAKHAGRSTINM-DDV 66 (76)
T ss_dssp HHHHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTT-SEE-H-HHH
T ss_pred HHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCeecH-HHH
Confidence 34555677777775 4678999999999988543 33 31 1111 23567888877777 775
No 24
>smart00428 H3 Histone H3.
Probab=40.40 E-value=6.7 Score=31.38 Aligned_cols=21 Identities=14% Similarity=-0.075 Sum_probs=18.1
Q ss_pred CCchHHhhhcCCceeecccCCc
Q psy16276 107 PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 107 f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
|+++++.+.|+|.|||.. +|+
T Consensus 74 feda~~~a~HAkRvTl~~-kDi 94 (105)
T smart00428 74 FEDTNLLAIHAKRVTIMP-KDI 94 (105)
T ss_pred HHHHHHHHHHhCCccCcH-hhH
Confidence 566778899999999998 887
No 25
>PLN00121 histone H3; Provisional
Probab=38.77 E-value=11 Score=31.54 Aligned_cols=22 Identities=18% Similarity=-0.070 Sum_probs=19.7
Q ss_pred cCCCchHHhhhcCCceeecccCCc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
| ||++++.+.|+|.||+.. +|+
T Consensus 104 l-fed~~lca~HakRVTl~~-kD~ 125 (136)
T PLN00121 104 L-FEDTNLCAIHAKRVTIMP-KDI 125 (136)
T ss_pred H-HhhhHHHHHHhcceecch-hhH
Confidence 5 788999999999999988 887
No 26
>PTZ00018 histone H3; Provisional
Probab=38.29 E-value=12 Score=31.38 Aligned_cols=22 Identities=18% Similarity=-0.070 Sum_probs=19.8
Q ss_pred cCCCchHHhhhcCCceeecccCCc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
| ||++++.++|+|+||+.. +|+
T Consensus 104 l-fed~~lca~HakRVTl~~-kD~ 125 (136)
T PTZ00018 104 L-FEDTNLCAIHAKRVTIMP-KDI 125 (136)
T ss_pred H-hhhhHHHHHhhcceecch-hhH
Confidence 5 788999999999999988 887
No 27
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=33.21 E-value=13 Score=35.48 Aligned_cols=48 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHHHHhc-----cccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCC
Q psy16276 71 LVREIAQDF-----KTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVS 138 (215)
Q Consensus 71 LVREIaq~~-----~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s 138 (215)
+|+.+++.| ....+....||.||+.|+| -| . | .|-+|. .-|-||+|.|
T Consensus 356 ~vK~la~~~ak~s~~sK~kiskdal~aleqasd---wf-F--e--------------Ql~dDL~aYA~HAgRKT 409 (414)
T PF15511_consen 356 VVKKLAQHFAKSSGGSKMKISKDALEALEQASD---WF-F--E--------------QLGDDLEAYAKHAGRKT 409 (414)
T ss_dssp HHHHHHHHHH-------S-B-HHHHHHHHHHHH---HH-H--H--------------HHHHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHH---HH-H--H--------------HHHHHHHHHHHHcCCCc
Confidence 344444444 3678999999999999999 88 4 3 344554 6777887755
No 28
>PLN00161 histone H3; Provisional
Probab=31.99 E-value=13 Score=31.14 Aligned_cols=23 Identities=17% Similarity=-0.084 Sum_probs=19.9
Q ss_pred cCCCchHHhhhcCCceeecccCCcc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTPT 129 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~l 129 (215)
| ||++++.++|+|.||+.. .|+.
T Consensus 98 l-Feda~lcaiHAkRVTlm~-kDm~ 120 (135)
T PLN00161 98 L-FEDCNLCAIHAKRVTIMP-KDMQ 120 (135)
T ss_pred H-HHHHHHHHHHhcCcccch-hhHH
Confidence 5 678888999999999988 8873
No 29
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=26.09 E-value=27 Score=23.32 Aligned_cols=9 Identities=67% Similarity=0.759 Sum_probs=7.6
Q ss_pred cCCCCCCCC
Q psy16276 171 ALSMPNVSP 179 (215)
Q Consensus 171 ~~~~~~~~~ 179 (215)
+|+|||||.
T Consensus 13 al~NPnvSe 21 (36)
T PF10346_consen 13 ALHNPNVSE 21 (36)
T ss_pred HhcCCCcCH
Confidence 789999984
Done!