Query psy16276
Match_columns 215
No_of_seqs 166 out of 611
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 17:17:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 1.3E-51 4.4E-56 335.2 -2.0 123 1-144 1-124 (136)
2 2yfv_A Histone H3-like centrom 100.0 3.9E-39 1.3E-43 250.2 -1.5 87 37-144 2-92 (100)
3 3r45_A Histone H3-like centrom 100.0 2.8E-38 9.7E-43 262.0 -2.1 101 21-144 37-141 (156)
4 3nqu_A Histone H3-like centrom 100.0 5.3E-38 1.8E-42 256.6 -1.7 100 23-145 23-126 (140)
5 2hue_B Histone H3; mini beta s 99.9 2E-25 6.7E-30 166.4 -1.5 64 60-144 1-65 (77)
6 3nqj_A Histone H3-like centrom 99.9 3.6E-25 1.2E-29 166.7 -1.1 64 61-145 2-68 (82)
7 2l5a_A Histone H3-like centrom 99.9 6.7E-24 2.3E-28 185.4 0.7 66 59-145 8-77 (235)
8 2ly8_A Budding yeast chaperone 99.8 1E-22 3.5E-27 162.9 1.6 54 62-135 1-58 (121)
9 1b67_A Protein (histone HMFA); 98.9 6.3E-11 2.1E-15 83.8 -0.8 55 63-143 3-58 (68)
10 2r10_A Chromatin structure-rem 98.9 8.6E-11 3E-15 106.1 -0.3 50 3-52 3-52 (361)
11 1ku5_A HPHA, archaeal histon; 98.4 2.1E-08 7.3E-13 71.5 -0.4 52 62-138 6-58 (70)
12 1n1j_A NF-YB; histone-like PAI 98.1 2.1E-07 7.1E-12 69.6 -1.6 59 57-138 3-62 (93)
13 2x4w_B Histone H3.2; transcrip 98.1 1.2E-06 4.2E-11 51.5 1.5 25 24-48 2-26 (26)
14 3avr_B Histone H3; cupin super 95.8 0.0035 1.2E-07 36.8 1.5 25 18-42 1-25 (26)
15 3a1b_A DNA (cytosine-5)-methyl 94.5 0.0068 2.3E-07 50.3 0.1 21 2-22 1-21 (159)
16 1id3_B Histone H4; nucleosome 88.5 0.057 1.9E-06 41.2 -1.0 63 61-133 27-91 (102)
17 2hue_C Histone H4; mini beta s 85.6 0.11 3.6E-06 38.1 -0.9 64 61-134 9-74 (84)
18 3b0c_T CENP-T, centromere prot 84.9 0.16 5.6E-06 39.2 -0.2 65 60-134 5-71 (111)
19 1tzy_D Histone H4-VI; histone- 84.7 0.11 3.9E-06 39.3 -1.2 64 59-132 26-91 (103)
20 2yfw_B Histone H4, H4; cell cy 84.1 0.12 3.9E-06 39.3 -1.4 61 62-132 29-91 (103)
21 1h3o_B Transcription initiatio 81.1 0.48 1.6E-05 34.8 1.0 58 62-128 5-64 (76)
22 1jfi_B DR1 protein, transcript 80.6 0.19 6.4E-06 42.3 -1.5 40 57-103 10-49 (179)
23 1f1e_A Histone fold protein; a 79.0 0.41 1.4E-05 39.2 0.1 61 58-128 78-140 (154)
24 2byk_B Chrac-14; nucleosome sl 74.0 0.63 2.2E-05 36.7 -0.1 38 60-103 7-44 (128)
25 1f1e_A Histone fold protein; a 66.2 1.1 3.7E-05 36.7 -0.3 87 63-158 5-94 (154)
26 3b0c_W CENP-W, centromere prot 62.2 0.85 2.9E-05 32.5 -1.5 35 62-103 4-38 (76)
27 3v9r_A MHF1, uncharacterized p 59.9 2.5 8.7E-05 31.8 0.7 60 65-129 11-74 (90)
28 4dra_A Centromere protein S; D 58.8 2.6 8.7E-05 33.2 0.6 55 68-129 33-89 (113)
29 3b0b_B CENP-S, centromere prot 53.8 2.2 7.4E-05 33.1 -0.6 55 69-128 22-80 (107)
30 3vh5_A CENP-S; histone fold, c 49.3 3.2 0.00011 33.8 -0.3 61 66-131 19-83 (140)
31 1taf_A TFIID TBP associated fa 47.3 4.7 0.00016 28.8 0.4 50 70-124 5-56 (68)
32 4g92_C HAPE; transcription fac 42.5 13 0.00046 28.5 2.3 59 63-124 39-97 (119)
33 2yfv_A Histone H3-like centrom 33.2 4.6 0.00016 30.9 -1.6 22 105-128 72-93 (100)
34 1taf_B TFIID TBP associated fa 30.9 14 0.00048 26.5 0.7 53 63-124 7-61 (70)
35 3nqu_A Histone H3-like centrom 24.5 8.4 0.00029 31.2 -1.6 22 105-128 105-126 (140)
36 1xg8_A Hypothetical protein SA 23.0 34 0.0012 26.9 1.6 32 183-214 30-74 (111)
37 1n1j_B NF-YC; histone-like PAI 23.0 22 0.00076 26.2 0.6 75 49-128 4-78 (97)
38 1tzy_C Histone H3; histone-fol 22.6 9.5 0.00033 30.6 -1.6 22 105-128 104-125 (136)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=1.3e-51 Score=335.21 Aligned_cols=123 Identities=79% Similarity=1.099 Sum_probs=79.2
Q ss_pred CCCcccccccCCCCCCCCchhhhhhhccCCCCCCCCCCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc
Q psy16276 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (215)
Q Consensus 1 MARTKqtArKstggkaPRKqlatkaarKs~p~~g~~kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~ 80 (215)
||||||||+||+||++|+|++++++++|++|+++|++++||||||++||+|||+||+||+|||||+||+||||||+++|+
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCC
Q psy16276 81 TDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKT 144 (215)
Q Consensus 81 ~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~ 144 (215)
+++|||++||.|||||+| +| | |+||||+ +||+||+|+| +++++
T Consensus 81 ~~~R~q~~Al~aLQeaaE---ay-L----------------v~Lfeda~l~A~HAkRvT-i~~kD 124 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASE---AY-L----------------VGLFEDTNLCAIHAKRVT-IMPKD 124 (136)
T ss_dssp TTCEECHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHTTCSE-ECHHH
T ss_pred hhhcccHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHcCCcc-CcHHh
Confidence 999999999999999999 99 9 9999998 9999999987 77754
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=3.9e-39 Score=250.18 Aligned_cols=87 Identities=44% Similarity=0.693 Sum_probs=56.3
Q ss_pred CCCcccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhccc---cccchHHHHHHHHHHHHhhcccccCCCchHHh
Q psy16276 37 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQYWIENSGQFDLNPSSSLKI 113 (215)
Q Consensus 37 kKp~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~~---~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~ 113 (215)
++||||||||+||+|||+||+||+|||||+||+||||||+++|++ ++|||++|+.|||||+| +| |
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaE---ay-L-------- 69 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASE---AY-L-------- 69 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHH---HH-H--------
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHH---HH-H--------
Confidence 578999999999999999999999999999999999999999987 89999999999999999 99 9
Q ss_pred hhcCCceeecccCCc-ccccCCCcCCCCCCCC
Q psy16276 114 KKHRKPTWLDYLKTP-TCALSMPNVSPLCPKT 144 (215)
Q Consensus 114 ~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~ 144 (215)
|++|||+ +||+||+|+| +|+++
T Consensus 70 --------v~Lfeda~l~A~HAkRvT-i~~kD 92 (100)
T 2yfv_A 70 --------VGLLEHTNLLALHAKRIT-IMRKD 92 (100)
T ss_dssp --------HHHHHHHHHHHHHTTCSE-ECHHH
T ss_pred --------HHHHHHHHHHHHHcCCcc-CCHHH
Confidence 9999998 9999999987 77764
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=262.01 Aligned_cols=101 Identities=43% Similarity=0.610 Sum_probs=61.0
Q ss_pred hhhhhhccCCCCCCCCCCC-cccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc--ccccchHHHHHHHHHHH
Q psy16276 21 LATKAARKSAPSTGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQYWI 97 (215)
Q Consensus 21 latkaarKs~p~~g~~kKp-~R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~--~~lRfqssAL~ALQEAa 97 (215)
.+++++++++|.+|+++++ +|||||+ |+|||+||+||+|||+|+||+||||||+++|+ .++|||++||.|||||+
T Consensus 37 ~~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAa 114 (156)
T 3r45_A 37 TPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAA 114 (156)
T ss_dssp ----------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHH
Confidence 3678899999999999876 7899998 99999999999999999999999999999998 68999999999999999
Q ss_pred HhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCC
Q psy16276 98 ENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKT 144 (215)
Q Consensus 98 E~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~ 144 (215)
| +| | |+||||+ +||+||+|+| +|+++
T Consensus 115 E---ay-L----------------V~LFEdanLcAiHAkRVT-Im~kD 141 (156)
T 3r45_A 115 E---AF-L----------------VHLFEDAYLLTLHAGRVT-LFPKD 141 (156)
T ss_dssp H---HH-H----------------HHHHHHHHHHHHHHTCSE-ECHHH
T ss_pred H---HH-H----------------HHHHHHHHHHHHHcCccc-ccHHH
Confidence 9 99 9 9999998 9999999988 88765
No 4
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=5.3e-38 Score=256.57 Aligned_cols=100 Identities=44% Similarity=0.640 Sum_probs=61.3
Q ss_pred hhhhccCCCCCCCCCCCc-ccCCCchhhHHHHhhhchhhhhhccchhHHHHHHHHHhcc--ccccchHHHHHHHHHHHHh
Q psy16276 23 TKAARKSAPSTGGVKKPH-RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQYWIEN 99 (215)
Q Consensus 23 tkaarKs~p~~g~~kKp~-R~RPGTvALrEIRryQkSTeLLIpKlPFqRLVREIaq~~~--~~lRfqssAL~ALQEAaE~ 99 (215)
.+++++++|.+|+++++| |||||+ |+|||+||+||+|||+|+||+||||||+++|+ .++|||++||.|||||+|
T Consensus 23 ~~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaE- 99 (140)
T 3nqu_A 23 TPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE- 99 (140)
T ss_dssp --------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHH-
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHH-
Confidence 467899999999987765 899998 99999999999999999999999999999998 689999999999999999
Q ss_pred hcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCCCCCC
Q psy16276 100 SGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLCPKTF 145 (215)
Q Consensus 100 ~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~~~~~ 145 (215)
+| | |+||||+ +||+||+|+| +|+++.
T Consensus 100 --ay-L----------------v~LFEdanlcAiHAkRVT-Im~kDi 126 (140)
T 3nqu_A 100 --AF-L----------------VHLFEDAYLLTLHAGRVT-LFPKDV 126 (140)
T ss_dssp --HH-H----------------HHHHHHHHHHHHHTTCSE-ECHHHH
T ss_pred --HH-H----------------HHHHHHHHHHHHHcCccc-ccHHHH
Confidence 99 9 9999998 9999999988 887653
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.89 E-value=2e-25 Score=166.39 Aligned_cols=64 Identities=58% Similarity=0.830 Sum_probs=59.9
Q ss_pred hhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCC
Q psy16276 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVS 138 (215)
Q Consensus 60 eLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s 138 (215)
+|||||+||+||||||+++|++++|||++|+.|||||+| +| | |++|||+ +||+||+|+|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~E---ay-l----------------v~lfeda~l~A~HAkRvT 60 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE---AY-L----------------VALFEDTNLCAIHAKRVT 60 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHTTCSE
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHcCCcc
Confidence 479999999999999999999999999999999999999 99 9 9999998 9999999987
Q ss_pred CCCCCC
Q psy16276 139 PLCPKT 144 (215)
Q Consensus 139 ~~~~~~ 144 (215)
+++++
T Consensus 61 -i~~kD 65 (77)
T 2hue_B 61 -IMPKD 65 (77)
T ss_dssp -ECHHH
T ss_pred -CcHhh
Confidence 77754
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.6e-25 Score=166.74 Aligned_cols=64 Identities=44% Similarity=0.636 Sum_probs=60.1
Q ss_pred hhhccchhHHHHHHHHHhcc--ccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcC
Q psy16276 61 LLIRKLPFQRLVREIAQDFK--TDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNV 137 (215)
Q Consensus 61 LLIpKlPFqRLVREIaq~~~--~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~ 137 (215)
|||||+||+||||||+++|+ +++|||++|+.|||||+| +| | |++|||+ +||+||+|+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E---~y-l----------------v~Lfeda~lcAiHAkRv 61 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE---AF-L----------------VHLFEDAYLLTLHAGRV 61 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHTTCS
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHcCCc
Confidence 79999999999999999998 689999999999999999 99 9 9999998 999999998
Q ss_pred CCCCCCCC
Q psy16276 138 SPLCPKTF 145 (215)
Q Consensus 138 s~~~~~~~ 145 (215)
| +|+++.
T Consensus 62 T-i~~kDi 68 (82)
T 3nqj_A 62 T-LFPKDV 68 (82)
T ss_dssp S-BCHHHH
T ss_pred c-CcHHHH
Confidence 8 888653
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.7e-24 Score=185.37 Aligned_cols=66 Identities=42% Similarity=0.639 Sum_probs=60.1
Q ss_pred hhhhhccchhHHHHHHHHHhccc---cccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCC
Q psy16276 59 TELLIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSM 134 (215)
Q Consensus 59 TeLLIpKlPFqRLVREIaq~~~~---~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAiha 134 (215)
..|||||+|||||||||+|+|++ ++|||++||.|||||+| || | |++|||+ +||+||
T Consensus 8 ~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaE---ay-L----------------V~LFEd~nLcaiHA 67 (235)
T 2l5a_A 8 KKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASE---AY-L----------------VGLLEHTNLLALHA 67 (235)
T ss_dssp ---CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHST
T ss_pred ccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHH---HH-H----------------HHHHhhhHHHHhcc
Confidence 46899999999999999999986 89999999999999999 99 9 9999998 999999
Q ss_pred CcCCCCCCCCC
Q psy16276 135 PNVSPLCPKTF 145 (215)
Q Consensus 135 kr~s~~~~~~~ 145 (215)
+|+| +|||+.
T Consensus 68 kRVT-im~kDi 77 (235)
T 2l5a_A 68 KRIT-IMKKDM 77 (235)
T ss_dssp TTSG-GGTTHH
T ss_pred cccc-cchhhH
Confidence 9988 999763
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=1e-22 Score=162.86 Aligned_cols=54 Identities=48% Similarity=0.694 Sum_probs=52.1
Q ss_pred hhccchhHHHHHHHHHhccc---cccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCC
Q psy16276 62 LIRKLPFQRLVREIAQDFKT---DLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMP 135 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~---~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihak 135 (215)
||||+|||||||||+++|++ ++|||++||.|||||+| +| | |++|||+ +|||||.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsE---ay-L----------------V~lFEd~nlcaiHA~ 58 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASE---AY-L----------------VGLLEHTNLLALHLV 58 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHTTTCC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHH---HH-H----------------HHHHHHHhHHHHcCC
Confidence 79999999999999999987 89999999999999999 99 9 9999998 9999993
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.94 E-value=6.3e-11 Score=83.84 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=48.5
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCCCCC
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVSPLC 141 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s~~~ 141 (215)
||++||+|++|++ .+.||+++|+.+||||+| .| + +.+++|+ .||.|++|+| ++
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e---~f-i----------------~~l~~~A~~~a~~~kRkT-I~ 56 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLE---EM-G----------------EEIASEAVKLAKHAGRKT-IK 56 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHTTCSE-EC
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHcCCCc-cC
Confidence 7999999999998 579999999999999999 99 8 8888887 8888888876 55
Q ss_pred CC
Q psy16276 142 PK 143 (215)
Q Consensus 142 ~~ 143 (215)
++
T Consensus 57 ~~ 58 (68)
T 1b67_A 57 AE 58 (68)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.93 E-value=8.6e-11 Score=106.13 Aligned_cols=50 Identities=42% Similarity=0.526 Sum_probs=12.6
Q ss_pred CcccccccCCCCCCCCchhhhhhhccCCCCCCCCCCCcccCCCchhhHHH
Q psy16276 3 RTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 52 (215)
Q Consensus 3 RTKqtArKstggkaPRKqlatkaarKs~p~~g~~kKp~R~RPGTvALrEI 52 (215)
||||||||||||++|||++++++++++++.+++++++||||||++|+.|.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 89999999999999999999999999988899999999999999997764
No 11
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.43 E-value=2.1e-08 Score=71.49 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=44.4
Q ss_pred hhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCCcCC
Q psy16276 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMPNVS 138 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihakr~s 138 (215)
-||+.||.||+|++ ...||+.+|+.+|||++| .| + .++++|+ .||.|++|.|
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~---~~-~----------------~~v~~dA~~~a~hakRkT 58 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLE---EY-A----------------IEIAKKAVEFARHAGRKT 58 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHTTTCSE
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHcCCCc
Confidence 38999999999986 568999999999999999 99 8 6777776 7777777654
No 12
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.09 E-value=2.1e-07 Score=69.59 Aligned_cols=59 Identities=7% Similarity=0.099 Sum_probs=45.2
Q ss_pred chhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc-ccccCCC
Q psy16276 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP-TCALSMP 135 (215)
Q Consensus 57 kSTeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~-lCAihak 135 (215)
++++++||++++.|++|++.. .+.|++.+|+.+||+|+| .| + ..+++++ .||.|++
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e---~F-i----------------~~l~~~A~~~a~~~k 59 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVS---EF-I----------------SFITSEASERCHQEK 59 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHH---HH-H----------------HHHHHHHHHHHHHcC
Confidence 357889999999999998743 468999999999999999 88 7 5566665 6777776
Q ss_pred cCC
Q psy16276 136 NVS 138 (215)
Q Consensus 136 r~s 138 (215)
|.|
T Consensus 60 RkT 62 (93)
T 1n1j_A 60 RKT 62 (93)
T ss_dssp CSS
T ss_pred CCc
Confidence 655
No 13
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=98.05 E-value=1.2e-06 Score=51.52 Aligned_cols=25 Identities=72% Similarity=1.038 Sum_probs=21.5
Q ss_pred hhhccCCCCCCCCCCCcccCCCchh
Q psy16276 24 KAARKSAPSTGGVKKPHRYRPGTVA 48 (215)
Q Consensus 24 kaarKs~p~~g~~kKp~R~RPGTvA 48 (215)
+++++++|.+++++++||||||+||
T Consensus 2 k~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 2 KAARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred CccccCCCCCCccccccccccccCC
Confidence 4567778888999999999999986
No 14
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=95.77 E-value=0.0035 Score=36.75 Aligned_cols=25 Identities=80% Similarity=1.024 Sum_probs=21.7
Q ss_pred CchhhhhhhccCCCCCCCCCCCccc
Q psy16276 18 RKQLATKAARKSAPSTGGVKKPHRY 42 (215)
Q Consensus 18 RKqlatkaarKs~p~~g~~kKp~R~ 42 (215)
||+++++++++++|.+++++++||.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 5788899999998999999999974
No 15
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.50 E-value=0.0068 Score=50.33 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.6
Q ss_pred CCcccccccCCCCCCCCchhh
Q psy16276 2 ARTKQTARKSTGGKAPRKQLA 22 (215)
Q Consensus 2 ARTKqtArKstggkaPRKqla 22 (215)
|||||+||||||||++++++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 899999999999999999873
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=88.49 E-value=0.057 Score=41.24 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=49.0
Q ss_pred hhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccccC
Q psy16276 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCALS 133 (215)
Q Consensus 61 LLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAih 133 (215)
--||+.+..||.|.. ..-|+...|..+|+++.| .| +. -++++..+.|.++-||.. +|...|+.
T Consensus 27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le---~f-i~~I~~dA~~~a~HakRKTVt~-~DV~~ALk 91 (102)
T 1id3_B 27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLK---SF-LESVIRDSVTYTEHAKRKTVTS-LDVVYALK 91 (102)
T ss_dssp GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCcCcH-HHHHHHHH
Confidence 348999999998754 347899999999999999 88 75 566777788888888876 67655544
No 17
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=85.63 E-value=0.11 Score=38.12 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=49.3
Q ss_pred hhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccccCC
Q psy16276 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCALSM 134 (215)
Q Consensus 61 LLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAiha 134 (215)
--||+.+..||.|.. ..-|....|..+|++..| .| +. -+.++..+.|.++-||.. +|...|+..
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~---~~-~~~I~~dA~~~a~ha~RKTvt~-~DV~~Alk~ 74 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLK---VF-LENVIRDAVTYTEHAKRKTVTA-MDVVYALKR 74 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHHHHTTT
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCcCcH-HHHHHHHHH
Confidence 348999988888753 347899999999999999 88 75 566777788888888876 776555543
No 18
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=84.92 E-value=0.16 Score=39.19 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=47.8
Q ss_pred hhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccccCC
Q psy16276 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCALSM 134 (215)
Q Consensus 60 eLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAiha 134 (215)
++-||+....||.|+- ...|+...|+.+|+|+++ .| +. -.+.+..+.|.++-||.. +|...|+..
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~---~f-~~~v~~da~~~A~HA~RKTV~~-eDV~lalrr 71 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSE---RY-FKQISSDLEAYSQHAGRKTVEM-ADVELLMRR 71 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCcCCH-HHHHHHHHH
Confidence 4567888888877665 467999999999999999 88 65 667777888998888887 887555443
No 19
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=84.70 E-value=0.11 Score=39.31 Aligned_cols=64 Identities=19% Similarity=0.113 Sum_probs=46.8
Q ss_pred hhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCccccc
Q psy16276 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCAL 132 (215)
Q Consensus 59 TeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAi 132 (215)
..--||+.+..||.|.. . .-|+..+|..+|++..| .| +. -+.++..+.|.+.-||.. +|...|+
T Consensus 26 ~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle---~~-~~~V~~dA~~~a~hakRktIt~-~DV~~Al 91 (103)
T 1tzy_D 26 NIQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLK---VF-LENVIRDAVTYTEHAKRKTVTA-MDVVYAL 91 (103)
T ss_dssp GGGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHHHHH
T ss_pred hcccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCcCCH-HHHHHHH
Confidence 33348999988887653 2 25999999999999999 88 64 566666777777777776 6654444
No 20
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=84.07 E-value=0.12 Score=39.32 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=44.9
Q ss_pred hhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCccccc
Q psy16276 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCAL 132 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAi 132 (215)
-||+.+..||.|.. . .-|+..+|..+|++..| .| +. -+.++..+.|.+.-||.. +|...|+
T Consensus 29 gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle---~~-~~~V~~dA~~~a~hakRktvt~-~DV~~Al 91 (103)
T 2yfw_B 29 GITKPAIRRLARRG----G-VKRISGLIYEEVRNVLK---TF-LESVIRDAVTYTEHAKRKTVTS-LDVVYAL 91 (103)
T ss_dssp -CCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHHHHH
T ss_pred cCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCcCcH-HHHHHHH
Confidence 38999988887653 2 25999999999999999 88 64 566666777777777776 5554443
No 21
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=81.09 E-value=0.48 Score=34.84 Aligned_cols=58 Identities=22% Similarity=0.382 Sum_probs=48.0
Q ss_pred hhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCc
Q psy16276 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
++.|--.+.||++|- ....+..++-++|.+-|+ .| ++ .+.+..++.||+.-|+++ .|.
T Consensus 5 vl~k~~L~~Lv~~id----p~~~ld~~vee~ll~lAD---dF-V~~V~~~ac~lAKhR~s~~le~-kDv 64 (76)
T 1h3o_B 5 VLTKKKLQDLVREVD----PNEQLDEDVEEMLLQIAD---DF-IESVVTAACQLARHRKSSTLEV-KDV 64 (76)
T ss_dssp SSCHHHHHHHHHHHC----SSCCCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCCEECH-HHH
T ss_pred cccHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCCccH-HHH
Confidence 457788888998883 567889999999999999 99 87 666778999999988877 554
No 22
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=80.62 E-value=0.19 Score=42.32 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=33.7
Q ss_pred chhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc
Q psy16276 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQF 103 (215)
Q Consensus 57 kSTeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay 103 (215)
...++.+|+.+..|+++++.- +.++..+|..+|+++++ .|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~---eF 49 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCT---EF 49 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHH---HH
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHH---HH
Confidence 445788999999999998753 68999999999999999 66
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=78.98 E-value=0.41 Score=39.21 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=48.5
Q ss_pred hhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCc
Q psy16276 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 58 STeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
--++.||+.|..|+.|+- ...|..++|-.+||++.| .| +. -+.++....|.++-||.. ||-
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le---~f-~~~I~~~A~~~a~ha~RKTIt~-eDV 140 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLIC---RA-TEELGEKAAEYADEDGRKTVQG-EDV 140 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCccCH-HHH
Confidence 356789999999999886 567999999999999999 88 53 556666777777777766 554
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=74.00 E-value=0.63 Score=36.71 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=28.6
Q ss_pred hhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc
Q psy16276 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQF 103 (215)
Q Consensus 60 eLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay 103 (215)
++.+|..+..|++++.. ....++..+|..+|++|+| -|
T Consensus 7 d~~LP~A~I~rImK~~~---pd~~~iS~dA~~~l~ka~e---~F 44 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEAL---PESASVSKEARAAIARAAS---VF 44 (128)
T ss_dssp ----CCSHHHHHHHHHS---CTTCEECHHHHHHHHHHHH---HH
T ss_pred cccCCHHHHHHHHHHhC---cccceECHHHHHHHHHHHH---HH
Confidence 56788888888887653 3467999999999999999 66
No 25
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=66.19 E-value=1.1 Score=36.72 Aligned_cols=87 Identities=9% Similarity=0.032 Sum_probs=56.6
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccccCC-CcCCC
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCALSM-PNVSP 139 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCAiha-kr~s~ 139 (215)
+|+.|..|+.|+-+ ...|...+|-.+|+++.| .| +. =++++.+..|.++-||.. +|-.-|++. .-..-
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~---~f-~~~i~~~A~~~a~ha~RKTv~a-~DV~~a~~~lg~~~v 75 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVP---TM-AEYVANAAKSVLDASGKKTLME-EHLKALADVLMVEGV 75 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHH---HH-HHHHHHHHHHHHHTTTCSEECH-HHHHHHHHHHTCTTS
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCcCCH-HHHHHHHHhcccccC
Confidence 68888888887653 348999999999999999 77 53 466667788888888887 776333322 11111
Q ss_pred CCCCCCCCCccccccccCc
Q psy16276 140 LCPKTFSWPDVSEESVLKF 158 (215)
Q Consensus 140 ~~~~~~~~~~~s~e~~~~~ 158 (215)
.-.....+|-+++....|-
T Consensus 76 ~d~~~l~lP~a~V~Ri~k~ 94 (154)
T 1f1e_A 76 EDYDGELFGRATVRRILKR 94 (154)
T ss_dssp TTCCSCCCCHHHHHHHHHH
T ss_pred CccccccCCccHHHHHHHH
Confidence 2233345566665555443
No 26
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=62.25 E-value=0.85 Score=32.52 Aligned_cols=35 Identities=9% Similarity=0.183 Sum_probs=29.4
Q ss_pred hhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhccc
Q psy16276 62 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQF 103 (215)
Q Consensus 62 LIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay 103 (215)
.+|+++..|+++++. .+.++..+|..++++++| .|
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~---~F 38 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFL---LF 38 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHH---HH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHH---HH
Confidence 478888999888764 367899999999999999 66
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=59.93 E-value=2.5 Score=31.76 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=41.6
Q ss_pred cchhHHHHHHHHHhc-c-ccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcc
Q psy16276 65 KLPFQRLVREIAQDF-K-TDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPT 129 (215)
Q Consensus 65 KlPFqRLVREIaq~~-~-~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~l 129 (215)
|.-+.--|-.|+++- . .+..+...++.+|-|.+| .| +. -.+....+.|.++-||+. +|..
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~---~~-~~~ia~Dl~~fA~HAgRkTI~~-eDV~ 74 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAY---LQ-LGEMGSDLQAFARHAGRGVVNK-SDLM 74 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCccCH-HHHH
Confidence 444555566666654 2 247899999999999999 88 53 344455777888877777 7763
No 28
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=58.80 E-value=2.6 Score=33.17 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcc
Q psy16276 68 FQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPT 129 (215)
Q Consensus 68 FqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~l 129 (215)
..|+|++...+ .+..+...++.+|-|.+| .| +. -.+....+.|.++-||+. +|..
T Consensus 33 V~rIvke~gae--r~~~vS~~ai~aL~El~~---~~-~~~ia~Dl~~fAkHAgRkTI~~-eDV~ 89 (113)
T 4dra_A 33 VGCLCEEVALD--KEMQFSKQTIAAISELTF---RQ-CENFAKDLEMFARHAKRTTINT-EDVK 89 (113)
T ss_dssp HHHHHHHHHHH--HTCCBCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHH
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCCCccCH-HHHH
Confidence 34555554433 256799999999999999 88 53 344455777777777777 7763
No 29
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=53.77 E-value=2.2 Score=33.09 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcc--ccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCc
Q psy16276 69 QRLVREIAQDFK--TDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 69 qRLVREIaq~~~--~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
+--|-.|+++.. .+.++...++.+|-|.++ .| .. -.+....+.|.++-||+. +|.
T Consensus 22 ~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~---~~-~~~ia~Da~~fA~HAgRkTI~~-eDV 80 (107)
T 3b0b_B 22 HYTTGCLCQDVAEDKGVLFSKQTVAAISEITF---RQ-CENFARDLEMFARHAKRSTITS-EDV 80 (107)
T ss_dssp HHHHHHHHHHHHHHHTCEECHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHH
T ss_pred HHHHHHHHHHHhhhcCCccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHhcCcCcCCH-HHH
Confidence 333444444432 356999999999999999 88 42 344455677777777777 665
No 30
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=49.34 E-value=3.2 Score=33.80 Aligned_cols=61 Identities=11% Similarity=0.093 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHhc--cccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecccCCcccc
Q psy16276 66 LPFQRLVREIAQDF--KTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDYLKTPTCA 131 (215)
Q Consensus 66 lPFqRLVREIaq~~--~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~lfeD~lCA 131 (215)
.-.+--|..|+++. ..+..+...++.+|-|.+| .| +. -.+-.+.+.|.++-||+. +|..++
T Consensus 19 aAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~---~~-~e~ia~DLe~FAkHAGRKTI~~-eDVkLa 83 (140)
T 3vh5_A 19 AAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITF---RQ-AENFARDLEMFARHAKRSTITS-EDVKLL 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSEECH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCccCH-HHHHHH
Confidence 34444455666654 2467899999999999999 88 53 344455778888888888 776333
No 31
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=47.34 E-value=4.7 Score=28.79 Aligned_cols=50 Identities=8% Similarity=0.275 Sum_probs=31.9
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecc
Q psy16276 70 RLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDY 124 (215)
Q Consensus 70 RLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~l 124 (215)
++|..|..+.+.+ +++..++..|-|-+| .| .. .+..+..+.|...-||+.
T Consensus 5 ~~i~~iLk~~G~~-~~~~~v~~~L~e~~~---ry-~~~il~dA~~~a~HAgrktv~~ 56 (68)
T 1taf_A 5 QVIMSILKELNVQ-EYEPRVVNQLLEFTF---RY-VTSILDDAKVYANHARKKTIDL 56 (68)
T ss_dssp HHHHHHHHHTTCC-CBCTHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHCCCc-ccCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCCCCH
Confidence 5666676666554 999999999999999 88 51 333333344444444433
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=42.54 E-value=13 Score=28.54 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=38.6
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecc
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDY 124 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~l 124 (215)
.+.+|..| |+.|+..-...-+...+|..+++.|+|.-++| | -+.+...+...|.-||..
T Consensus 39 ~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~-L-~~~A~~~a~~~krktI~~ 97 (119)
T 4g92_C 39 IHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITE-L-TMRAWIHAEDNKRRTLQR 97 (119)
T ss_dssp CCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHH-H-HHHHHHHHHHTTCSEECH
T ss_pred cCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHH-H-HHHHHHHHHhcccCccCH
Confidence 46789998 56777765666799999999999999933333 2 233333444444444444
No 33
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=33.18 E-value=4.6 Score=30.86 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=18.9
Q ss_pred cCCCchHHhhhcCCceeecccCCc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
| ||++++.+.|.|+|||.. +|+
T Consensus 72 L-feda~l~A~HAkRvTi~~-kDi 93 (100)
T 2yfv_A 72 L-LEHTNLLALHAKRITIMR-KDM 93 (100)
T ss_dssp H-HHHHHHHHHHTTCSEECH-HHH
T ss_pred H-HHHHHHHHHHcCCccCCH-HHH
Confidence 5 677888999999999988 776
No 34
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=30.94 E-value=14 Score=26.45 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=34.6
Q ss_pred hccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccC--CCchHHhhhcCCceeecc
Q psy16276 63 IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLN--PSSSLKIKKHRKPTWLDY 124 (215)
Q Consensus 63 IpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~--f~~s~~~~~h~k~vtV~l 124 (215)
+|..|..++ ++..+- -+...+|..+|-+-.| .+ +- .+.+++.+.|.|+.|+..
T Consensus 7 lp~~~v~~i----aes~Gi-~~lsddaa~~LA~dvE---yr-~~eI~qeA~kfmrHakRk~Lt~ 61 (70)
T 1taf_B 7 ISAESMKVI----AESIGV-GSLSDDAAKELAEDVS---IK-LKRIVQDAAKFMNHAKRQKLSV 61 (70)
T ss_dssp CCHHHHHHH----HHHTTC-CCBCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHHHHH----HHHCCC-CCCCHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHcCCCeecH
Confidence 455555544 444433 2778899999999999 55 53 566666777777766654
No 35
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=24.47 E-value=8.4 Score=31.24 Aligned_cols=22 Identities=18% Similarity=-0.022 Sum_probs=19.5
Q ss_pred cCCCchHHhhhcCCceeecccCCc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
| ||++++.+.|.|+|||-. +|+
T Consensus 105 L-FEdanlcAiHAkRVTIm~-kDi 126 (140)
T 3nqu_A 105 L-FEDAYLLTLHAGRVTLFP-KDV 126 (140)
T ss_dssp H-HHHHHHHHHHTTCSEECH-HHH
T ss_pred H-HHHHHHHHHHcCcccccH-HHH
Confidence 5 778889999999999998 887
No 36
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=23.05 E-value=34 Score=26.90 Aligned_cols=32 Identities=19% Similarity=0.606 Sum_probs=16.7
Q ss_pred ccccccc--------CCcceee-ecCCCChHH----HHHHHHhhh
Q psy16276 183 KTFSWLD--------KEPIKFN-VDLDGAPEE----LIQLVQSIK 214 (215)
Q Consensus 183 ~~~~~~~--------~~~~~~~-~~~~~~~~~----~~~~~~~~~ 214 (215)
-||.||. ..|+.|. ||..+.|++ -.|+.+.|.
T Consensus 30 eTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ 74 (111)
T 1xg8_A 30 DIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIE 74 (111)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHh
Confidence 4666664 2344443 788888877 445666654
No 37
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=23.02 E-value=22 Score=26.18 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=37.7
Q ss_pred hHHHHhhhchhhhhhccchhHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccccCCCchHHhhhcCCceeecccCCc
Q psy16276 49 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIENSGQFDLNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 49 LrEIRryQkSTeLLIpKlPFqRLVREIaq~~~~~lRfqssAL~ALQEAaE~~~ay~L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
+.||+..- ..+.=-..+|..|+ +.|.+.-...-+...+|..++..|+|.-+++ | -+.++..+.+.|.-||.. +|.
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~-l-~~~A~~~a~~~krktI~~-~di 78 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITE-L-TLRAWIHTEDNKRRTLQR-NDI 78 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHH-H-HHHHHHHHHHTTCSEECH-HHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHH-H-HHHHHHHHHHcCCccCCH-HHH
Confidence 45666542 12222346777776 4566655444689999999999999933333 2 344445555555556655 443
No 38
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=22.65 E-value=9.5 Score=30.64 Aligned_cols=22 Identities=18% Similarity=-0.070 Sum_probs=19.0
Q ss_pred cCCCchHHhhhcCCceeecccCCc
Q psy16276 105 LNPSSSLKIKKHRKPTWLDYLKTP 128 (215)
Q Consensus 105 L~f~~s~~~~~h~k~vtV~lfeD~ 128 (215)
| ||++++.+.|.|+|||.. +|+
T Consensus 104 L-feda~l~A~HAkRvTi~~-kDi 125 (136)
T 1tzy_C 104 L-FEDTNLCAIHAKRVTIMP-KDI 125 (136)
T ss_dssp H-HHHHHHHHHHTTCSEECH-HHH
T ss_pred H-HHHHHHHHHHcCCccCcH-HhH
Confidence 5 677888999999999988 886
Done!