RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16276
         (215 letters)



>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),
          erythrocytes [TaxId: 9031]}
          Length = 95

 Score =  105 bits (264), Expect = 2e-30
 Identities = 51/57 (89%), Positives = 53/57 (92%)

Query: 42 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQYWIE 98
          YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQ   E
Sbjct: 1  YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 57


>d1e7ua3 d.15.1.5 (A:143-321) Phoshoinositide 3-kinase (PI3K) {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 179

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 2/53 (3%)

Query: 158 FPTWLDYLKTPTCALSMPNVSPLCPKTFSWLDKEPIKFNVDLDGAPEELIQLV 210
              W+     P   L    ++  C               V  D  P  ++Q  
Sbjct: 56  MHPWVTSKPLPEYLLK--KITNNCVFIVIHRSTTSQTIKVSADDTPGTILQSF 106


>d1q25a3 b.64.1.1 (A:281-432) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 152

 Score = 25.2 bits (54), Expect = 5.0
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 11/39 (28%)

Query: 116 HRKPTWLDYLKTPTCALSMP------NVSPLCPKTFSWP 148
           HR     DYL++ +C+LS        ++ PL     S  
Sbjct: 1   HR-----DYLESRSCSLSSAQHDVAVDLQPLSRVEASDS 34



 Score = 24.8 bits (53), Expect = 6.4
 Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 6/31 (19%)

Query: 163 DYLKTPTCALSMP------NVSPLCPKTFSW 187
           DYL++ +C+LS        ++ PL     S 
Sbjct: 3   DYLESRSCSLSSAQHDVAVDLQPLSRVEASD 33


>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
           {Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 253

 Score = 25.2 bits (55), Expect = 5.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 175 PNVSPLCPKTFSWLDKEPIKFNVDLDGAPEELIQLVQ 211
             + PL   T  WL    + +  +L G P+E+I L Q
Sbjct: 209 TGIPPLHLDTLLWLAGRAVLYGENLHGVPKEVIALFQ 245


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,955
Number of extensions: 37035
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 8
Length of query: 215
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 133
Effective length of database: 1,281,736
Effective search space: 170470888
Effective search space used: 170470888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)