BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16278
(88 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
MP VTY+RLDGSV T R VTKFN+DP+IDVLLLTT VGGLGLNLTGADTVIFV+HDW
Sbjct: 1761 MPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDW 1820
Query: 83 SPMK 86
+PM+
Sbjct: 1821 NPMR 1824
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 109 bits (272), Expect = 6e-24, Method: Composition-based stats.
Identities = 47/64 (73%), Positives = 58/64 (90%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
+P VTYLRLDGS+ RH+IV++FN+DP+IDVLLLTT VGGLGLNLTGADTV+FV+HDW
Sbjct: 1669 LPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDW 1728
Query: 83 SPMK 86
+PM+
Sbjct: 1729 NPMR 1732
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 103 bits (256), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
MP VTY+RLDGS+ R +V KFN DP+ID LLLTT+VGGLGLNLTGADTVIFV+HDW
Sbjct: 1671 MPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLLTTKVGGLGLNLTGADTVIFVEHDW 1730
Query: 83 SPM 85
+PM
Sbjct: 1731 NPM 1733
>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SWR1 PE=3 SV=1
Length = 1772
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 44/60 (73%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G+ Y+RLDG+ R + +FN+DP I V +L+T+ GGLG+NLTGADTVIF D DW+P
Sbjct: 1509 GLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNP 1568
>sp|Q6FK48|SWR1_CANGA Helicase SWR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SWR1 PE=3 SV=1
Length = 1450
Score = 76.3 bits (186), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y+RLDG+ R + +FNSDP I V +L+++ GGLG+NLTGADTVIF D DW+P
Sbjct: 1218 GYLYMRLDGATKIEDRQILTERFNSDPKITVFILSSRSGGLGINLTGADTVIFYDSDWNP 1277
>sp|Q59U81|SWR1_CANAL Helicase SWR1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=SWR1 PE=3 SV=1
Length = 1641
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 42/60 (70%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y+RLDG+ R + KFN DP I V +L+T+ GGLG+NLTGADTVIF D DW+P
Sbjct: 1406 GYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNP 1465
>sp|Q6CJ38|SWR1_KLULA Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SWR1 PE=3
SV=1
Length = 1572
Score = 75.5 bits (184), Expect = 9e-14, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y+RLDG+ R + +FNSDP I V +L+++ GGLG+NLTGADTVIF D DW+P
Sbjct: 1350 GYLYMRLDGATKIEDRQILTERFNSDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNP 1409
>sp|Q759G7|SWR1_ASHGO Helicase SWR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=SWR1 PE=3 SV=2
Length = 1486
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y+RLDG+ R + +FN+DP I V +L+++ GGLG+NLTGADTVIF D DW+P
Sbjct: 1257 GYLYMRLDGATKIEDRQILTERFNTDPRITVFILSSRSGGLGINLTGADTVIFYDSDWNP 1316
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp26 PE=4 SV=1
Length = 973
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/63 (53%), Positives = 42/63 (66%)
Query: 22 EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81
++P V Y R+DGS R +V FN + DV LLTT+VGGLG+NLTGAD VI D D
Sbjct: 663 DLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPD 722
Query: 82 WSP 84
W+P
Sbjct: 723 WNP 725
>sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN=ssl-1 PE=2 SV=4
Length = 2395
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y RLDG+ R A++ +FN+DP + +L+T+ GG+G+NLTGADTVIF D DW+P
Sbjct: 1228 GYQYFRLDGTTGVEQRQAMMERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNP 1287
>sp|Q4IAK7|SWR1_GIBZE Helicase SWR1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC
9075 / NRRL 31084) GN=SWR1 PE=3 SV=1
Length = 1691
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDG+ R + +FN+DP I +L+T+ GGLG+NLTGADTVIF D DW+P
Sbjct: 1411 GHKYLRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNP 1470
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1
SV=1
Length = 1493
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
TYL++DG+ +R ++T++N D +I V LLTT+VGGLG+NLTGA+ V+ D DW+P
Sbjct: 881 TYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNP 938
>sp|O13682|SWR1_SCHPO Helicase swr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=swr1 PE=3 SV=1
Length = 1288
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 42/60 (70%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDG+ R + +FN+D I V +L+T+ GGLG+NLTGADTVIF D DW+P
Sbjct: 1031 GHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNP 1090
>sp|Q0UG82|INO80_PHANO Putative DNA helicase INO80 OS=Phaeosphaeria nodorum (strain SN15 /
ATCC MYA-4574 / FGSC 10173) GN=INO80 PE=3 SV=2
Length = 1673
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 39/57 (68%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y RLDGS R V F SDPTI V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1442 YCRLDGSTKLEDRRDTVADFQSDPTIFVFLLSTRAGGLGINLTSADTVIFYDSDWNP 1498
>sp|P0CO16|INO80_CRYNJ Putative DNA helicase INO80 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=INO80 PE=3 SV=1
Length = 1765
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
YLRLDGS R +VT + ++P I V L+T+ GGLG+NLT ADTVIF DHDW+P
Sbjct: 1496 YLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNP 1552
>sp|P0CO17|INO80_CRYNB Putative DNA helicase INO80 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=INO80 PE=3 SV=1
Length = 1765
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
YLRLDGS R +VT + ++P I V L+T+ GGLG+NLT ADTVIF DHDW+P
Sbjct: 1496 YLRLDGSSPIAERRDMVTSWQTNPDIFVFCLSTRAGGLGINLTAADTVIFYDHDWNP 1552
>sp|Q6BKC2|SWR1_DEBHA Helicase SWR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=SWR1 PE=3 SV=2
Length = 1616
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y+RLDG+ R + KFN D I V +L+T+ GGLG+NLTGADTVIF D DW+P
Sbjct: 1372 GYRYMRLDGATKIEDRQLLTEKFNRDSKIPVFILSTRSGGLGINLTGADTVIFYDSDWNP 1431
>sp|Q7S133|SWR1_NEUCR Helicase swr-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=swr-1 PE=3 SV=1
Length = 1845
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDG+ R + +FN DP I +L+T+ GGLG+NLTGADTVIF D DW+P
Sbjct: 1546 GHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNP 1605
>sp|Q05471|SWR1_YEAST Helicase SWR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SWR1 PE=1 SV=1
Length = 1514
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G Y+RLDG+ R + +FN+D I V +L+++ GGLG+NLTGADTVIF D DW+P
Sbjct: 1286 GYLYMRLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNP 1345
>sp|Q4WAS9|SWR1_ASPFU Helicase swr1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=swr1 PE=3 SV=1
Length = 1695
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDG+ R + +FN+D I V +L+++ GGLG+NLTGADTVIF D DW+P
Sbjct: 1418 GHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNP 1477
>sp|Q4PGL2|INO80_USTMA Putative DNA helicase INO80 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=INO80 PE=3 SV=1
Length = 1910
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
YLRLDG+ + R +VT + + P + + LL+T+ GGLG+NLT ADTVIF DHDW+P
Sbjct: 1622 YLRLDGASKISDRRDMVTDWQTKPELFIFLLSTRAGGLGINLTAADTVIFYDHDWNP 1678
>sp|A6ZL17|RDH54_YEAS7 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain YJM789) GN=RDH54 PE=3 SV=1
Length = 924
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
M G+++ RLDGS+ + R +IVT FN +P I LL+ + GG+GLNL GA +I D+DW
Sbjct: 669 MAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDW 728
Query: 83 SP 84
+P
Sbjct: 729 NP 730
>sp|B3LN76|RDH54_YEAS1 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=RDH54 PE=3 SV=1
Length = 924
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
M G+++ RLDGS+ + R +IVT FN +P I LL+ + GG+GLNL GA +I D+DW
Sbjct: 669 MAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDW 728
Query: 83 SP 84
+P
Sbjct: 729 NP 730
>sp|Q5ARK3|SWR1_EMENI Helicase swr1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=swr1 PE=3 SV=2
Length = 1698
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDG+ R + +FN+D I +L+++ GGLG+NLTGADTVIF D DW+P
Sbjct: 1413 GHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNP 1472
>sp|O14148|INO80_SCHPO Putative DNA helicase ino80 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ino80 PE=1 SV=4
Length = 1604
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
YLRLDGS + R +VT++ + P + V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1472 YLRLDGSSKISQRRDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1528
>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
Length = 3230
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDGS R A++ +FN+D I +L+T+ GG+G+NLTGADTV+F D DW+P
Sbjct: 2083 GHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNP 2142
>sp|Q4P328|SWR1_USTMA Helicase SWR1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWR1
PE=3 SV=1
Length = 1830
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/59 (52%), Positives = 41/59 (69%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 83
G YLRLDG+ +R A+ +FN D I +L+T+ GGLG+NLTGADTV+F D DW+
Sbjct: 1573 GYRYLRLDGATKVESRQALTEQFNRDARISAFILSTRSGGLGINLTGADTVLFYDLDWN 1631
>sp|Q59KI4|INO80_CANAL Putative DNA helicase INO80 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=INO80 PE=3 SV=1
Length = 1387
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y+RLDGS +R +V + ++P I + +L+T+ GGLGLNLT ADTVIF D DW+P
Sbjct: 1279 YIRLDGSTTIESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNP 1335
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80
C + + RLDGS+ + R + FN+DP + + L++T+ GGLG+NLT ADTVI D
Sbjct: 618 CHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDS 677
Query: 81 DWSP 84
DW+P
Sbjct: 678 DWNP 681
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80
C + + RLDGS+ + R + FN+DP + + L++T+ GGLG+NLT ADTVI D
Sbjct: 635 CHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDS 694
Query: 81 DWSP 84
DW+P
Sbjct: 695 DWNP 698
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1
SV=2
Length = 1638
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 40/57 (70%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y+RLDGS +AR +V F + I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1199 YMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1255
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
SV=1
Length = 1085
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 22 EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81
++ + YLR+DG+ R ++V +FN++ + DV LLTT+VGGLG+NLTGA+ +I D D
Sbjct: 693 DLSHLNYLRMDGTTNIKGRQSLVDRFNNE-SFDVFLLTTRVGGLGVNLTGANRIIIFDPD 751
Query: 82 WSP 84
W+P
Sbjct: 752 WNP 754
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
TY+RLDGS + R +V F + I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1143 TYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1200
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 40/58 (68%)
Query: 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
TY+RLDGS + R +V F + I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1146 TYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1203
>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2
Length = 3198
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDGS R ++ +FN D I +L+T+ GG+G+NLTGADTVIF D DW+P
Sbjct: 1698 GHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNP 1757
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 39/57 (68%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y RLDGS R V F ++P+I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1702 YCRLDGSTKFEDRRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNP 1758
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDGS R + +FNSD I V + +++ GG+G+NLTGADTV F D DW+P
Sbjct: 978 GHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNP 1037
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G YLRLDGS R + +FNSD I V + +++ GG+G+NLTGADTV F D DW+P
Sbjct: 978 GHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNP 1037
>sp|A7EQA8|INO80_SCLS1 Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC
18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1
Length = 1707
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 38/57 (66%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
YLRLDGS R V F + P I + LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1465 YLRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNP 1521
>sp|C7GQI8|RDH54_YEAS2 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain JAY291) GN=RDH54 PE=3 SV=1
Length = 924
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
M G+++ RLDGS+ + R +IVT FN +P I LL+ + GG+GLNL GA +I D+DW
Sbjct: 669 MAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDW 728
Query: 83 SP 84
+P
Sbjct: 729 NP 730
>sp|P38086|RDH54_YEAST DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RDH54 PE=1
SV=4
Length = 958
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
M G+++ RLDGS+ + R +IVT FN +P I LL+ + GG+GLNL GA +I D+DW
Sbjct: 703 MAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDW 762
Query: 83 SP 84
+P
Sbjct: 763 NP 764
>sp|Q2UTQ9|INO80_ASPOR Putative DNA helicase ino80 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=ino80 PE=3 SV=1
Length = 1444
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 36/57 (63%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y RLDGS R V F P I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1259 YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1315
>sp|B5VE38|RDH54_YEAS6 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=RDH54 PE=3 SV=1
Length = 924
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/62 (48%), Positives = 43/62 (69%)
Query: 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82
M G+++ RLDGS+ + R +IVT FN +P I LL+ + GG+GLNL GA +I D+DW
Sbjct: 669 MAGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDW 728
Query: 83 SP 84
+P
Sbjct: 729 NP 730
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS)
GN=INO80 PE=3 SV=1
Length = 1662
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 37/57 (64%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y RLDGS R V+ F P I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1423 YCRLDGSTKLEDRRDTVSDFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1479
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G +Y R+DGSV RH + F + P I V LL+T+ GG+G+NLT ADTVIFVD D++P
Sbjct: 381 GYSYERVDGSVRGEERHLAIKNFGNQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNP 439
>sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens
GN=CHD1L PE=1 SV=2
Length = 897
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
G +Y R+DGSV RH + F P I V LL+T+ GG+G+NLT ADTVIFVD D++P
Sbjct: 387 GYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFNP 445
>sp|C0H4W3|HEPF1_PLAF7 Probable ATP-dependent helicase PF08_0048 OS=Plasmodium falciparum
(isolate 3D7) GN=PF08_0048 PE=3 SV=1
Length = 2082
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
+++RLDGS R IVTKFN+D +I + + +T+ G +G+NLT A+ VIF D DW+P
Sbjct: 1810 SFIRLDGSTKVEQRQKIVTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNP 1867
>sp|A1C9W6|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007
/ CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80
PE=3 SV=1
Length = 1707
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 36/57 (63%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y RLDGS R V F P I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1462 YCRLDGSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1518
>sp|Q6BGY8|INO80_DEBHA Putative DNA helicase INO80 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=INO80 PE=3 SV=2
Length = 1364
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y+RLDGS R +V + + P I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1185 YIRLDGSSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1241
>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020
/ DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1
Length = 1708
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 36/57 (63%)
Query: 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
Y RLDGS R V F P I V LL+T+ GGLG+NLT ADTVIF D DW+P
Sbjct: 1461 YCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1517
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,449,071
Number of Sequences: 539616
Number of extensions: 922647
Number of successful extensions: 2772
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2465
Number of HSP's gapped (non-prelim): 245
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)