Query psy16278
Match_columns 88
No_of_seqs 100 out of 1107
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 17:19:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16278.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16278hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384|consensus 99.9 2.6E-26 5.5E-31 177.1 4.9 84 4-87 694-786 (1373)
2 KOG0385|consensus 99.9 7.8E-26 1.7E-30 169.3 5.7 84 4-87 482-574 (971)
3 KOG0387|consensus 99.9 4.3E-24 9.2E-29 160.2 6.7 81 7-87 544-633 (923)
4 KOG0391|consensus 99.9 1.5E-24 3.3E-29 167.4 4.2 85 3-87 1270-1362(1958)
5 KOG0392|consensus 99.9 1.1E-23 2.4E-28 162.9 7.5 81 7-87 1338-1429(1549)
6 KOG0389|consensus 99.9 8.4E-24 1.8E-28 158.6 5.5 84 4-87 772-863 (941)
7 PLN03142 Probable chromatin-re 99.9 3.1E-23 6.6E-28 160.7 5.3 83 5-87 483-574 (1033)
8 KOG1002|consensus 99.9 1.2E-22 2.7E-27 147.7 3.4 81 7-87 636-724 (791)
9 KOG0390|consensus 99.8 1.9E-21 4.2E-26 146.7 6.6 81 8-88 590-683 (776)
10 KOG0388|consensus 99.8 7.7E-21 1.7E-25 142.5 5.4 83 4-87 1039-1129(1185)
11 COG0553 HepA Superfamily II DN 99.8 2.9E-19 6.2E-24 135.1 6.0 83 5-87 705-797 (866)
12 KOG1015|consensus 99.7 1.2E-17 2.7E-22 128.1 7.5 82 6-87 1139-1252(1567)
13 KOG0386|consensus 99.7 2E-18 4.2E-23 132.3 3.1 84 4-87 721-813 (1157)
14 KOG1000|consensus 99.7 4.4E-17 9.5E-22 118.7 5.9 83 4-86 487-577 (689)
15 KOG4439|consensus 99.7 3.7E-17 8.1E-22 122.4 3.7 82 6-87 743-833 (901)
16 PRK04914 ATP-dependent helicas 99.7 1.8E-16 3.9E-21 122.8 6.2 79 8-87 492-580 (956)
17 KOG1001|consensus 99.6 1.6E-17 3.5E-22 124.9 -5.7 78 11-88 541-626 (674)
18 PF00271 Helicase_C: Helicase 99.4 1.7E-13 3.8E-18 77.2 4.4 64 21-86 3-66 (78)
19 KOG1016|consensus 99.3 1.1E-12 2.4E-17 100.0 5.1 81 7-87 717-824 (1387)
20 cd00079 HELICc Helicase superf 99.3 2.9E-11 6.3E-16 72.8 7.2 77 8-86 27-111 (131)
21 smart00490 HELICc helicase sup 99.3 2.3E-11 5E-16 67.9 6.2 64 21-86 7-70 (82)
22 PRK13766 Hef nuclease; Provisi 99.2 2.4E-11 5.3E-16 92.6 7.7 78 7-86 363-456 (773)
23 KOG0331|consensus 99.2 3.7E-11 8.1E-16 88.4 7.5 77 6-84 338-422 (519)
24 PRK04837 ATP-dependent RNA hel 99.1 3.5E-10 7.7E-15 81.2 7.3 76 8-85 254-337 (423)
25 PTZ00110 helicase; Provisional 99.1 3.5E-10 7.5E-15 83.9 7.3 76 8-85 376-459 (545)
26 COG0513 SrmB Superfamily II DN 99.1 3.7E-10 7.9E-15 83.4 6.7 73 11-85 275-355 (513)
27 TIGR00603 rad25 DNA repair hel 99.1 3E-10 6.6E-15 86.6 5.8 73 7-82 494-571 (732)
28 PRK04537 ATP-dependent RNA hel 99.0 8.7E-10 1.9E-14 82.3 7.3 78 6-85 254-339 (572)
29 PRK11192 ATP-dependent RNA hel 99.0 1.2E-09 2.7E-14 78.5 7.7 76 8-85 244-327 (434)
30 PRK10590 ATP-dependent RNA hel 99.0 1.8E-09 3.9E-14 78.4 7.3 76 8-85 244-327 (456)
31 PRK11776 ATP-dependent RNA hel 99.0 2.7E-09 5.9E-14 77.3 7.5 76 8-85 241-324 (460)
32 PRK01297 ATP-dependent RNA hel 99.0 3E-09 6.5E-14 77.5 7.5 76 8-85 334-417 (475)
33 KOG0330|consensus 98.9 2.8E-09 6.1E-14 76.4 6.1 75 7-83 298-380 (476)
34 KOG0328|consensus 98.9 3.4E-09 7.3E-14 73.8 5.5 74 10-85 267-348 (400)
35 KOG0333|consensus 98.9 7E-09 1.5E-13 76.7 7.0 72 8-81 516-595 (673)
36 TIGR00614 recQ_fam ATP-depende 98.9 8.6E-09 1.9E-13 75.2 7.1 76 7-84 224-307 (470)
37 KOG0383|consensus 98.8 2.4E-10 5.1E-15 86.6 -2.0 62 4-66 626-696 (696)
38 PRK11057 ATP-dependent DNA hel 98.8 1.4E-08 3.1E-13 76.2 7.4 76 7-84 234-317 (607)
39 PLN00206 DEAD-box ATP-dependen 98.8 1.9E-08 4.2E-13 74.2 7.6 74 9-84 367-449 (518)
40 COG1111 MPH1 ERCC4-like helica 98.8 1.8E-08 3.9E-13 74.0 6.7 74 6-81 363-453 (542)
41 PTZ00424 helicase 45; Provisio 98.8 3.6E-08 7.9E-13 69.9 8.1 75 8-84 266-348 (401)
42 PRK11634 ATP-dependent RNA hel 98.8 2.7E-08 5.9E-13 75.1 7.6 75 8-84 244-326 (629)
43 TIGR01389 recQ ATP-dependent D 98.7 4.3E-08 9.3E-13 73.2 7.3 75 8-84 223-305 (591)
44 KOG0336|consensus 98.7 4.8E-08 1E-12 71.0 5.3 75 7-83 463-545 (629)
45 KOG0345|consensus 98.6 5.7E-08 1.2E-12 71.1 5.0 79 5-85 251-339 (567)
46 KOG0347|consensus 98.6 3.9E-08 8.4E-13 73.3 4.1 71 10-82 464-542 (731)
47 PHA02558 uvsW UvsW helicase; P 98.6 2.5E-07 5.5E-12 68.1 8.0 77 7-84 342-426 (501)
48 KOG0348|consensus 98.6 1.1E-07 2.3E-12 70.8 5.5 59 25-85 471-529 (708)
49 KOG0335|consensus 98.6 1.2E-07 2.5E-12 69.6 5.5 72 10-83 338-417 (482)
50 KOG0332|consensus 98.5 2.4E-07 5.1E-12 66.5 6.0 70 11-82 332-409 (477)
51 KOG0344|consensus 98.5 2.7E-07 5.9E-12 68.7 6.4 71 9-81 387-466 (593)
52 PLN03137 ATP-dependent DNA hel 98.5 2.9E-07 6.3E-12 73.2 6.8 74 9-84 680-761 (1195)
53 KOG0341|consensus 98.4 5.5E-07 1.2E-11 65.3 5.5 72 8-81 420-499 (610)
54 PRK10917 ATP-dependent DNA hel 98.4 1E-06 2.2E-11 67.1 6.9 74 7-82 469-560 (681)
55 KOG0338|consensus 98.4 3.7E-07 8E-12 67.7 3.8 72 8-81 425-504 (691)
56 TIGR03817 DECH_helic helicase/ 98.4 5.1E-07 1.1E-11 69.4 4.7 75 8-84 270-360 (742)
57 PRK13767 ATP-dependent helicas 98.3 1.6E-06 3.4E-11 67.8 6.6 75 8-84 283-371 (876)
58 TIGR00580 mfd transcription-re 98.3 3E-06 6.4E-11 66.6 7.7 72 8-81 659-740 (926)
59 KOG0340|consensus 98.3 1.6E-06 3.4E-11 62.0 5.3 76 8-85 253-336 (442)
60 TIGR00643 recG ATP-dependent D 98.3 3.5E-06 7.6E-11 63.7 7.4 74 7-82 446-537 (630)
61 KOG0342|consensus 98.3 9.2E-07 2E-11 65.0 3.6 74 10-85 331-412 (543)
62 PRK10689 transcription-repair 98.2 4.8E-06 1E-10 66.7 6.6 71 9-81 809-889 (1147)
63 KOG0350|consensus 98.2 1.9E-06 4.2E-11 63.7 4.0 73 8-82 428-512 (620)
64 TIGR01054 rgy reverse gyrase. 98.2 9.7E-06 2.1E-10 65.1 7.7 70 7-81 324-408 (1171)
65 KOG0298|consensus 98.1 7.2E-07 1.6E-11 71.1 0.9 78 4-87 1216-1301(1394)
66 KOG0327|consensus 98.1 7E-06 1.5E-10 58.8 5.4 74 10-85 264-345 (397)
67 TIGR01587 cas3_core CRISPR-ass 98.1 1.5E-05 3.2E-10 55.9 6.9 71 8-81 221-305 (358)
68 PRK09200 preprotein translocas 98.1 1.3E-05 2.9E-10 62.1 6.5 74 7-84 426-515 (790)
69 PRK05298 excinuclease ABC subu 98.0 2.1E-05 4.6E-10 59.8 7.2 73 7-81 444-524 (652)
70 PRK09401 reverse gyrase; Revie 98.0 1.3E-05 2.8E-10 64.4 6.2 70 7-82 326-410 (1176)
71 COG1061 SSL2 DNA or RNA helica 98.0 3.1E-05 6.7E-10 56.5 7.5 72 8-82 282-361 (442)
72 TIGR02621 cas3_GSU0051 CRISPR- 98.0 1.5E-05 3.2E-10 62.2 5.9 74 6-82 269-364 (844)
73 KOG4284|consensus 98.0 5.8E-06 1.3E-10 63.1 3.6 71 11-83 274-352 (980)
74 PRK12898 secA preprotein trans 98.0 2.2E-05 4.7E-10 59.9 6.4 73 8-84 472-560 (656)
75 TIGR00631 uvrb excinuclease AB 97.9 3.2E-05 7E-10 59.0 6.6 73 7-81 440-520 (655)
76 KOG0354|consensus 97.9 2.7E-05 5.9E-10 59.9 6.0 77 6-84 410-505 (746)
77 KOG0326|consensus 97.9 5.1E-06 1.1E-10 59.0 1.8 74 10-85 323-404 (459)
78 KOG0334|consensus 97.9 1.7E-05 3.6E-10 62.4 4.5 72 8-81 612-691 (997)
79 TIGR03714 secA2 accessory Sec 97.9 3.7E-05 8.1E-10 59.5 6.4 72 7-82 422-510 (762)
80 KOG0349|consensus 97.9 6.2E-05 1.3E-09 55.6 6.9 70 10-81 506-586 (725)
81 PRK09751 putative ATP-dependen 97.9 4.1E-05 8.9E-10 62.7 6.3 54 28-83 304-357 (1490)
82 COG0514 RecQ Superfamily II DN 97.8 0.00013 2.9E-09 55.1 7.9 75 7-83 228-310 (590)
83 TIGR00963 secA preprotein tran 97.8 8.4E-05 1.8E-09 57.4 6.8 74 7-84 403-491 (745)
84 PRK14701 reverse gyrase; Provi 97.8 6.6E-05 1.4E-09 62.1 6.5 71 6-82 327-412 (1638)
85 KOG0343|consensus 97.8 7.6E-05 1.6E-09 56.3 6.1 72 10-83 314-395 (758)
86 PRK11664 ATP-dependent RNA hel 97.8 6.7E-05 1.5E-09 58.5 6.1 73 7-81 210-293 (812)
87 KOG0339|consensus 97.8 6.1E-05 1.3E-09 56.3 5.5 69 11-81 470-546 (731)
88 TIGR01970 DEAH_box_HrpB ATP-de 97.8 6.6E-05 1.4E-09 58.6 6.0 72 8-81 208-290 (819)
89 PHA02653 RNA helicase NPH-II; 97.6 0.00017 3.7E-09 55.3 6.0 74 8-84 394-477 (675)
90 KOG0953|consensus 97.5 0.00026 5.7E-09 53.4 5.8 73 7-81 356-436 (700)
91 PRK12906 secA preprotein trans 97.5 0.00033 7.1E-09 54.6 6.0 74 7-84 438-527 (796)
92 KOG1123|consensus 97.3 0.00049 1.1E-08 51.7 5.2 75 7-82 541-618 (776)
93 PRK02362 ski2-like helicase; P 97.3 0.00048 1E-08 53.1 5.3 49 27-77 305-353 (737)
94 COG1200 RecG RecG-like helicas 97.3 0.00071 1.5E-08 51.8 6.0 57 23-81 505-561 (677)
95 PRK01172 ski2-like helicase; P 97.2 0.0011 2.3E-08 50.6 5.8 51 28-81 288-338 (674)
96 TIGR03158 cas3_cyano CRISPR-as 97.1 0.0019 4.1E-08 46.0 5.9 64 7-80 270-343 (357)
97 PRK13104 secA preprotein trans 97.0 0.0016 3.5E-08 51.4 5.2 61 6-70 441-509 (896)
98 PRK12904 preprotein translocas 96.9 0.0019 4.2E-08 50.7 5.1 61 7-71 428-496 (830)
99 PRK13107 preprotein translocas 96.9 0.0018 3.9E-08 51.1 4.8 60 7-70 447-514 (908)
100 KOG0346|consensus 96.7 0.0014 2.9E-08 48.5 2.9 73 10-84 269-384 (569)
101 PRK12900 secA preprotein trans 96.7 0.0044 9.6E-08 49.5 5.4 72 7-82 596-683 (1025)
102 PRK11448 hsdR type I restricti 96.5 0.013 2.7E-07 47.6 7.4 73 9-84 698-787 (1123)
103 COG1201 Lhr Lhr-like helicases 96.5 0.012 2.6E-07 46.3 6.5 69 11-81 255-332 (814)
104 TIGR00595 priA primosomal prot 96.3 0.0097 2.1E-07 44.4 5.4 57 23-81 282-340 (505)
105 PRK09694 helicase Cas3; Provis 96.3 0.017 3.8E-07 45.8 6.8 71 7-78 558-645 (878)
106 PRK11131 ATP-dependent RNA hel 96.2 0.012 2.6E-07 48.3 5.6 69 7-79 284-363 (1294)
107 PRK05580 primosome assembly pr 96.2 0.019 4.1E-07 44.3 6.2 56 24-81 451-508 (679)
108 TIGR01967 DEAH_box_HrpA ATP-de 96.0 0.026 5.7E-07 46.4 6.3 69 8-80 278-357 (1283)
109 PRK00254 ski2-like helicase; P 95.8 0.017 3.8E-07 44.5 4.5 49 27-77 297-345 (720)
110 PF06862 DUF1253: Protein of u 95.0 0.17 3.6E-06 37.5 7.3 78 7-85 298-384 (442)
111 KOG0337|consensus 94.6 0.059 1.3E-06 39.9 4.0 72 11-84 263-342 (529)
112 COG1197 Mfd Transcription-repa 94.4 0.16 3.4E-06 41.5 6.2 57 22-80 826-882 (1139)
113 PF13871 Helicase_C_4: Helicas 94.2 0.076 1.6E-06 37.0 3.8 41 42-84 52-100 (278)
114 COG1202 Superfamily II helicas 94.2 0.089 1.9E-06 40.6 4.3 65 10-77 441-513 (830)
115 KOG0351|consensus 91.4 0.39 8.5E-06 38.7 4.6 74 6-81 482-563 (941)
116 COG0556 UvrB Helicase subunit 90.9 1.2 2.5E-05 34.3 6.4 73 7-81 444-524 (663)
117 TIGR01407 dinG_rel DnaQ family 90.7 0.86 1.9E-05 36.1 5.8 44 38-83 712-757 (850)
118 PRK08074 bifunctional ATP-depe 90.4 0.83 1.8E-05 36.7 5.5 76 7-84 751-837 (928)
119 smart00492 HELICc3 helicase su 89.2 1.8 3.9E-05 27.0 5.4 47 35-82 31-79 (141)
120 PF12622 NpwBP: mRNA biogenesi 87.9 0.28 6.1E-06 25.4 1.0 11 75-85 4-14 (48)
121 TIGR03117 cas_csf4 CRISPR-asso 87.7 1.5 3.2E-05 34.1 5.1 76 6-84 468-563 (636)
122 COG1205 Distinct helicase fami 85.7 1.1 2.3E-05 35.9 3.5 73 7-81 304-392 (851)
123 PF13307 Helicase_C_2: Helicas 85.3 1.9 4.2E-05 27.3 4.0 45 37-83 45-93 (167)
124 PRK07246 bifunctional ATP-depe 83.9 4.6 9.9E-05 32.2 6.2 73 6-83 645-726 (820)
125 COG1199 DinG Rad3-related DNA 82.5 5.9 0.00013 30.3 6.2 74 6-83 477-560 (654)
126 KOG0352|consensus 81.7 1.7 3.7E-05 32.8 2.9 70 12-83 258-335 (641)
127 smart00491 HELICc2 helicase su 81.4 4.2 9.1E-05 25.4 4.3 51 30-82 24-80 (142)
128 COG4889 Predicted helicase [Ge 80.3 3.4 7.4E-05 34.0 4.3 56 25-81 499-556 (1518)
129 PF11496 HDA2-3: Class II hist 77.1 3.2 7E-05 29.2 3.1 81 6-86 114-220 (297)
130 cd03028 GRX_PICOT_like Glutare 75.3 13 0.00027 21.1 5.0 41 8-48 6-60 (90)
131 COG4096 HsdR Type I site-speci 74.8 13 0.00028 30.1 6.0 69 10-80 427-508 (875)
132 TIGR00604 rad3 DNA repair heli 73.2 10 0.00022 29.6 5.2 47 38-85 565-619 (705)
133 TIGR00365 monothiol glutaredox 73.0 16 0.00034 21.1 5.2 42 8-49 10-65 (97)
134 COG1198 PriA Primosomal protei 72.9 9.6 0.00021 30.2 4.9 58 22-81 503-562 (730)
135 COG1203 CRISPR-associated heli 72.1 13 0.00029 29.2 5.6 64 7-70 438-511 (733)
136 PRK11747 dinG ATP-dependent DN 71.8 12 0.00026 29.3 5.3 72 7-83 533-617 (697)
137 COG4098 comFA Superfamily II D 69.7 17 0.00036 26.9 5.2 68 7-78 303-380 (441)
138 PRK10917 ATP-dependent DNA hel 68.5 23 0.00049 27.7 6.1 70 8-78 309-390 (681)
139 TIGR00348 hsdR type I site-spe 67.6 46 0.001 26.0 7.6 72 9-81 514-619 (667)
140 KOG3432|consensus 66.0 23 0.00049 21.7 4.6 37 23-59 33-69 (121)
141 KOG0951|consensus 59.3 31 0.00068 29.6 5.5 58 25-85 607-665 (1674)
142 KOG0952|consensus 58.8 25 0.00054 29.4 4.8 56 29-86 400-455 (1230)
143 COG1204 Superfamily II helicas 58.4 16 0.00036 29.1 3.8 53 29-84 318-371 (766)
144 COG1110 Reverse gyrase [DNA re 57.4 35 0.00077 28.5 5.5 70 6-81 332-416 (1187)
145 KOG0329|consensus 54.0 5.9 0.00013 28.1 0.7 28 57-84 302-329 (387)
146 TIGR00643 recG ATP-dependent D 52.9 49 0.0011 25.5 5.5 69 8-77 283-363 (630)
147 TIGR01101 V_ATP_synt_F vacuola 52.3 33 0.0007 20.9 3.7 38 27-64 35-72 (115)
148 cd03418 GRX_GRXb_1_3_like Glut 51.8 35 0.00076 17.9 5.5 48 11-58 1-57 (75)
149 COG2179 Predicted hydrolase of 51.4 33 0.00073 22.5 3.8 76 5-81 58-140 (175)
150 cd03031 GRX_GRX_like Glutaredo 47.7 70 0.0015 20.2 5.2 38 11-48 1-53 (147)
151 KOG0352|consensus 45.5 12 0.00027 28.4 1.2 54 11-64 63-125 (641)
152 PRK10824 glutaredoxin-4; Provi 43.8 65 0.0014 19.5 4.1 56 8-64 13-83 (115)
153 PF13607 Succ_CoA_lig: Succiny 43.0 23 0.00049 22.1 2.0 43 24-66 26-68 (138)
154 COG1643 HrpA HrpA-like helicas 41.9 67 0.0014 26.2 4.8 51 24-77 286-337 (845)
155 cd03027 GRX_DEP Glutaredoxin ( 39.7 60 0.0013 17.1 4.6 38 11-48 2-48 (73)
156 KOG2340|consensus 39.3 24 0.00051 27.5 2.0 64 21-85 572-636 (698)
157 TIGR00580 mfd transcription-re 38.6 1.4E+02 0.0029 24.7 6.1 71 8-79 499-581 (926)
158 PF00462 Glutaredoxin: Glutare 38.4 57 0.0012 16.5 4.6 38 12-49 1-47 (60)
159 cd03030 GRX_SH3BGR Glutaredoxi 37.4 84 0.0018 18.1 3.9 44 21-64 26-73 (92)
160 KOG0525|consensus 36.4 23 0.00049 25.0 1.4 37 46-82 173-212 (362)
161 PF07208 DUF1414: Protein of u 36.3 37 0.0008 17.2 1.8 18 32-49 21-38 (44)
162 PRK12903 secA preprotein trans 36.0 1.4E+02 0.003 24.7 5.8 71 7-81 424-510 (925)
163 PHA02977 hypothetical protein; 35.5 18 0.00038 23.4 0.7 11 76-86 157-167 (201)
164 PF06723 MreB_Mbl: MreB/Mbl pr 34.1 91 0.002 22.3 4.2 51 28-78 97-150 (326)
165 PRK10689 transcription-repair 33.5 2.1E+02 0.0045 24.3 6.5 69 8-77 648-728 (1147)
166 PF09445 Methyltransf_15: RNA 32.9 22 0.00047 23.0 0.8 11 74-84 71-81 (163)
167 PF08248 Tryp_FSAP: Tryptophyl 32.5 27 0.00058 12.7 0.7 7 80-86 3-9 (12)
168 cd04195 GT2_AmsE_like GT2_AmsE 32.2 1.3E+02 0.0027 18.6 5.2 57 25-81 29-90 (201)
169 KOG0353|consensus 32.1 58 0.0013 24.6 3.0 72 8-81 316-395 (695)
170 PF06577 DUF1134: Protein of u 31.7 55 0.0012 21.2 2.5 29 55-84 129-159 (160)
171 COG0742 N6-adenine-specific me 31.3 74 0.0016 21.1 3.1 40 44-83 86-125 (187)
172 PF09010 AsiA: Anti-Sigma Fact 30.2 35 0.00076 20.0 1.3 21 29-49 56-76 (91)
173 KOG0949|consensus 30.0 1E+02 0.0022 26.2 4.1 53 31-85 968-1021(1330)
174 PRK12326 preprotein translocas 29.7 1.1E+02 0.0024 24.7 4.3 60 7-70 425-492 (764)
175 cd07014 S49_SppA Signal peptid 29.0 1.1E+02 0.0023 19.4 3.6 38 43-80 63-100 (177)
176 COG3260 Ni,Fe-hydrogenase III 27.9 1.7E+02 0.0036 18.7 4.9 37 27-64 51-87 (148)
177 cd06427 CESA_like_2 CESA_like_ 27.3 1.2E+02 0.0026 19.7 3.7 55 26-81 33-94 (241)
178 PF07985 SRR1: SRR1; InterPro 27.3 44 0.00096 17.4 1.3 13 73-85 35-47 (56)
179 PRK10638 glutaredoxin 3; Provi 27.2 1.1E+02 0.0025 16.5 4.6 36 11-46 3-47 (83)
180 PF14060 DUF4252: Domain of un 27.0 1.6E+02 0.0034 18.1 4.9 41 5-45 104-154 (155)
181 PF07545 Vg_Tdu: Vestigial/Ton 26.3 43 0.00092 15.9 1.0 11 9-19 4-14 (33)
182 PRK05580 primosome assembly pr 26.0 3.3E+02 0.0072 21.5 6.7 69 8-79 189-266 (679)
183 PF10740 DUF2529: Protein of u 24.9 38 0.00083 22.2 0.9 25 8-32 81-115 (172)
184 PRK10018 putative glycosyl tra 24.9 2.4E+02 0.0051 19.4 5.0 63 22-85 31-101 (279)
185 PRK13556 azoreductase; Provisi 24.5 45 0.00097 21.7 1.2 18 69-86 87-104 (208)
186 TIGR01957 nuoB_fam NADH-quinon 24.0 2E+02 0.0043 18.2 4.8 37 25-62 57-93 (145)
187 cd07019 S49_SppA_1 Signal pept 23.5 1.5E+02 0.0032 19.5 3.5 23 37-59 23-45 (211)
188 PTZ00062 glutaredoxin; Provisi 23.5 2.3E+02 0.005 18.8 5.1 44 8-52 111-168 (204)
189 PF13490 zf-HC2: Putative zinc 23.5 19 0.00041 16.6 -0.6 21 31-51 12-32 (36)
190 PF00549 Ligase_CoA: CoA-ligas 22.8 62 0.0013 20.6 1.6 27 37-63 58-84 (153)
191 PF07492 Trehalase_Ca-bi: Neut 22.8 34 0.00075 15.9 0.3 12 2-13 15-26 (30)
192 PRK03187 tgl transglutaminase; 22.5 1.1E+02 0.0023 21.6 2.8 22 66-87 163-184 (272)
193 COG0608 RecJ Single-stranded D 22.4 1.3E+02 0.0029 22.5 3.5 70 7-81 34-122 (491)
194 PHA03050 glutaredoxin; Provisi 22.0 1.8E+02 0.004 17.1 4.9 42 8-49 11-67 (108)
195 PF12268 DUF3612: Protein of u 21.4 64 0.0014 20.9 1.4 20 68-87 84-103 (178)
196 PRK13555 azoreductase; Provisi 20.9 60 0.0013 21.5 1.3 17 69-85 87-103 (208)
197 PLN00125 Succinyl-CoA ligase [ 20.5 1.4E+02 0.0031 21.1 3.1 43 22-64 173-217 (300)
198 cd04184 GT2_RfbC_Mx_like Myxoc 20.3 2.2E+02 0.0048 17.4 4.4 58 24-81 30-93 (202)
199 COG1182 AcpD Acyl carrier prot 20.1 64 0.0014 21.7 1.2 18 69-86 85-102 (202)
200 PRK14583 hmsR N-glycosyltransf 20.1 2.9E+02 0.0062 20.2 4.8 61 21-82 100-166 (444)
No 1
>KOG0384|consensus
Probab=99.93 E-value=2.6e-26 Score=177.12 Aligned_cols=84 Identities=39% Similarity=0.602 Sum_probs=78.4
Q ss_pred cCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccC-CCCCcEEEEeccccccccCCcCCCE
Q psy16278 4 TSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~-~~~~~v~lls~~~~~~Gl~L~~a~~ 74 (88)
.+++.|||||||||.++ |..++++|.|+||+++.+.|+.+|++|+. +...+||||||+|||.||||+.|++
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADT 773 (1373)
T KOG0384|consen 694 RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADT 773 (1373)
T ss_pred HHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccce
Confidence 46889999999999994 88999999999999999999999999998 5567789999999999999999999
Q ss_pred EEEeCCCCCCCCC
Q psy16278 75 VIFVDHDWSPMKL 87 (88)
Q Consensus 75 vi~~d~~wnP~~~ 87 (88)
||++|.+|||+++
T Consensus 774 VIIFDSDWNPQND 786 (1373)
T KOG0384|consen 774 VIIFDSDWNPQND 786 (1373)
T ss_pred EEEeCCCCCcchH
Confidence 9999999999864
No 2
>KOG0385|consensus
Probab=99.92 E-value=7.8e-26 Score=169.28 Aligned_cols=84 Identities=42% Similarity=0.676 Sum_probs=78.2
Q ss_pred cCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCC-CCcEEEEeccccccccCCcCCCE
Q psy16278 4 TSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~-~~~v~lls~~~~~~Gl~L~~a~~ 74 (88)
.+++.|||||||||++. +..+++.|+|+||+++-++|..+|+.|+.++ ..+|||+||+|||.||||++|++
T Consensus 482 ~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADt 561 (971)
T KOG0385|consen 482 KLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADT 561 (971)
T ss_pred HHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccE
Confidence 35789999999999994 7899999999999999999999999999855 68899999999999999999999
Q ss_pred EEEeCCCCCCCCC
Q psy16278 75 VIFVDHDWSPMKL 87 (88)
Q Consensus 75 vi~~d~~wnP~~~ 87 (88)
||+||.+|||+++
T Consensus 562 VIlyDSDWNPQ~D 574 (971)
T KOG0385|consen 562 VILYDSDWNPQVD 574 (971)
T ss_pred EEEecCCCCchhh
Confidence 9999999999864
No 3
>KOG0387|consensus
Probab=99.90 E-value=4.3e-24 Score=160.22 Aligned_cols=81 Identities=44% Similarity=0.699 Sum_probs=76.1
Q ss_pred cCCCceEEEEeecc--------cc-cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYTT--------CE-MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~-~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
..|+|+|+|||-+. |. ..++.|.++||.++...|+.+|++|++++...||||++++||.|+||++||+||+
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 46789999999883 44 5899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCC
Q psy16278 78 VDHDWSPMKL 87 (88)
Q Consensus 78 ~d~~wnP~~~ 87 (88)
+||+|||+++
T Consensus 624 fDPdWNPStD 633 (923)
T KOG0387|consen 624 FDPDWNPSTD 633 (923)
T ss_pred ECCCCCCccc
Confidence 9999999975
No 4
>KOG0391|consensus
Probab=99.90 E-value=1.5e-24 Score=167.40 Aligned_cols=85 Identities=41% Similarity=0.688 Sum_probs=81.2
Q ss_pred CcCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCE
Q psy16278 3 STSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 3 ~~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~ 74 (88)
.+++.+|||||||||..+ |.++|+-|+|+||.++.++|+.++++||.|+.++||++|++.||.|+||++|++
T Consensus 1270 qQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADT 1349 (1958)
T KOG0391|consen 1270 QQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADT 1349 (1958)
T ss_pred HHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCce
Confidence 467899999999999994 899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCC
Q psy16278 75 VIFVDHDWSPMKL 87 (88)
Q Consensus 75 vi~~d~~wnP~~~ 87 (88)
|||||.+|||..+
T Consensus 1350 VvFYDsDwNPtMD 1362 (1958)
T KOG0391|consen 1350 VVFYDSDWNPTMD 1362 (1958)
T ss_pred EEEecCCCCchhh
Confidence 9999999999864
No 5
>KOG0392|consensus
Probab=99.89 E-value=1.1e-23 Score=162.86 Aligned_cols=81 Identities=62% Similarity=0.966 Sum_probs=75.2
Q ss_pred cCCCceEEEEeecc-----------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 7 SEVHRPKTSSKYTT-----------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 7 ~~g~k~liFs~~~~-----------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
..+||+|||+|+.. -....+.|.|+||++++.+|++++++||+||.+.|+|++|.+||.||||++|++|
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 36899999999992 3555778999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCC
Q psy16278 76 IFVDHDWSPMKL 87 (88)
Q Consensus 76 i~~d~~wnP~~~ 87 (88)
||+|.+||||++
T Consensus 1418 VFvEHDWNPMrD 1429 (1549)
T KOG0392|consen 1418 VFVEHDWNPMRD 1429 (1549)
T ss_pred EEEecCCCchhh
Confidence 999999999974
No 6
>KOG0389|consensus
Probab=99.89 E-value=8.4e-24 Score=158.64 Aligned_cols=84 Identities=39% Similarity=0.609 Sum_probs=79.7
Q ss_pred cCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 4 TSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.++.+|+||||||||+. |...++.|.|+||++....|+.+|+.|+.+.++.|||+||+|||.||||++||+|
T Consensus 772 ~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~V 851 (941)
T KOG0389|consen 772 KIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTV 851 (941)
T ss_pred HHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceE
Confidence 46788999999999993 8889999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCC
Q psy16278 76 IFVDHDWSPMKL 87 (88)
Q Consensus 76 i~~d~~wnP~~~ 87 (88)
|++|.++||-.+
T Consensus 852 IihD~dFNP~dD 863 (941)
T KOG0389|consen 852 IIHDIDFNPYDD 863 (941)
T ss_pred EEeecCCCCccc
Confidence 999999999764
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.88 E-value=3.1e-23 Score=160.66 Aligned_cols=83 Identities=36% Similarity=0.515 Sum_probs=75.4
Q ss_pred CccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCC-CCcEEEEeccccccccCCcCCCEE
Q psy16278 5 SRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 5 ~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~-~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
++..|+||||||||.. |..++++|+++||+++..+|++++++|+.++ ...+||+|+++||.||||+.|++|
T Consensus 483 Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~V 562 (1033)
T PLN03142 483 LKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIV 562 (1033)
T ss_pred HHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEE
Confidence 4568999999999983 6778999999999999999999999999854 456899999999999999999999
Q ss_pred EEeCCCCCCCCC
Q psy16278 76 IFVDHDWSPMKL 87 (88)
Q Consensus 76 i~~d~~wnP~~~ 87 (88)
|+||++|||+.+
T Consensus 563 IiyD~dWNP~~d 574 (1033)
T PLN03142 563 ILYDSDWNPQVD 574 (1033)
T ss_pred EEeCCCCChHHH
Confidence 999999999865
No 8
>KOG1002|consensus
Probab=99.86 E-value=1.2e-22 Score=147.65 Aligned_cols=81 Identities=30% Similarity=0.486 Sum_probs=76.7
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
+...|.||||||+ +|..-|++.+.+.|+|++.+|..++..|.+++.|+|||+|.+|||..|||+.|++|+++
T Consensus 636 d~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmm 715 (791)
T KOG1002|consen 636 DRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMM 715 (791)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEee
Confidence 3345999999999 48889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy16278 79 DHDWSPMKL 87 (88)
Q Consensus 79 d~~wnP~~~ 87 (88)
||||||++|
T Consensus 716 DPWWNpaVe 724 (791)
T KOG1002|consen 716 DPWWNPAVE 724 (791)
T ss_pred cccccHHHH
Confidence 999999986
No 9
>KOG0390|consensus
Probab=99.85 E-value=1.9e-21 Score=146.74 Aligned_cols=81 Identities=35% Similarity=0.564 Sum_probs=72.3
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCC-cEEEEeccccccccCCcCCCE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTI-DVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~-~v~lls~~~~~~Gl~L~~a~~ 74 (88)
-+.|.++|+++.. +..+|+.++++||.++..+|+.+|+.||+.++. +|||+|++|||+||||.+||+
T Consensus 590 ~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 590 IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 4567788888772 556699999999999999999999999997666 899999999999999999999
Q ss_pred EEEeCCCCCCCCCC
Q psy16278 75 VIFVDHDWSPMKLE 88 (88)
Q Consensus 75 vi~~d~~wnP~~~~ 88 (88)
+|++||+|||++++
T Consensus 670 lil~D~dWNPa~d~ 683 (776)
T KOG0390|consen 670 LILFDPDWNPAVDQ 683 (776)
T ss_pred EEEeCCCCCchhHH
Confidence 99999999999863
No 10
>KOG0388|consensus
Probab=99.82 E-value=7.7e-21 Score=142.46 Aligned_cols=83 Identities=45% Similarity=0.675 Sum_probs=78.9
Q ss_pred cCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 4 TSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.++++|||||+|-|.++ |..+++.|.++||+....+|...++.|+. +.++|||+|++|||.||||++|++|
T Consensus 1039 kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTV 1117 (1185)
T KOG0388|consen 1039 KLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTV 1117 (1185)
T ss_pred HhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceE
Confidence 46889999999999994 78899999999999999999999999999 8899999999999999999999999
Q ss_pred EEeCCCCCCCCC
Q psy16278 76 IFVDHDWSPMKL 87 (88)
Q Consensus 76 i~~d~~wnP~~~ 87 (88)
||||.+|||..+
T Consensus 1118 iFYdSDWNPT~D 1129 (1185)
T KOG0388|consen 1118 IFYDSDWNPTAD 1129 (1185)
T ss_pred EEecCCCCcchh
Confidence 999999999865
No 11
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.78 E-value=2.9e-19 Score=135.09 Aligned_cols=83 Identities=42% Similarity=0.680 Sum_probs=76.7
Q ss_pred CccCCC--ceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCE
Q psy16278 5 SRSEVH--RPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 5 ~~~~g~--k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~ 74 (88)
+..+|+ |++||+||+. +...++.|+++||+++...|+..++.|+++++..||++++++||.||||++|++
T Consensus 705 ~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~ 784 (866)
T COG0553 705 LLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADT 784 (866)
T ss_pred HHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccce
Confidence 456777 9999999993 566678999999999999999999999999889999999999999999999999
Q ss_pred EEEeCCCCCCCCC
Q psy16278 75 VIFVDHDWSPMKL 87 (88)
Q Consensus 75 vi~~d~~wnP~~~ 87 (88)
||++||+|||+.+
T Consensus 785 vi~~d~~wnp~~~ 797 (866)
T COG0553 785 VILFDPWWNPAVE 797 (866)
T ss_pred EEEeccccChHHH
Confidence 9999999999875
No 12
>KOG1015|consensus
Probab=99.72 E-value=1.2e-17 Score=128.05 Aligned_cols=82 Identities=30% Similarity=0.467 Sum_probs=73.5
Q ss_pred ccCCCceEEEEeec------------------------------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCC--C
Q psy16278 6 RSEVHRPKTSSKYT------------------------------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT--I 53 (88)
Q Consensus 6 ~~~g~k~liFs~~~------------------------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~--~ 53 (88)
.+-|.|+|||||.. ..+..|..|+++||++++.+|++...+||+..+ .
T Consensus 1139 eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRa 1218 (1567)
T KOG1015|consen 1139 EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRA 1218 (1567)
T ss_pred HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCccccee
Confidence 46689999999976 157789999999999999999999999998544 5
Q ss_pred cEEEEeccccccccCCcCCCEEEEeCCCCCCCCC
Q psy16278 54 DVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKL 87 (88)
Q Consensus 54 ~v~lls~~~~~~Gl~L~~a~~vi~~d~~wnP~~~ 87 (88)
+++||||+||+.|+||.+||+||++|-.|||+-+
T Consensus 1219 Rl~LISTRAGsLGiNLvAANRVIIfDasWNPSyD 1252 (1567)
T KOG1015|consen 1219 RLFLISTRAGSLGINLVAANRVIIFDASWNPSYD 1252 (1567)
T ss_pred EEEEEeeccCccccceeecceEEEEecccCCccc
Confidence 5799999999999999999999999999999853
No 13
>KOG0386|consensus
Probab=99.72 E-value=2e-18 Score=132.31 Aligned_cols=84 Identities=39% Similarity=0.607 Sum_probs=78.4
Q ss_pred cCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccC-CCCCcEEEEeccccccccCCcCCCE
Q psy16278 4 TSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~-~~~~~v~lls~~~~~~Gl~L~~a~~ 74 (88)
.+++.||||+.|+|.+. |..+++.|.++||.+..++|-.+++.|+. +..+++||+|+++||.|+||+.|++
T Consensus 721 KLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadt 800 (1157)
T KOG0386|consen 721 KLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADT 800 (1157)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcce
Confidence 46889999999999993 88999999999999999999999999998 5668889999999999999999999
Q ss_pred EEEeCCCCCCCCC
Q psy16278 75 VIFVDHDWSPMKL 87 (88)
Q Consensus 75 vi~~d~~wnP~~~ 87 (88)
||++|.+|||..+
T Consensus 801 viifdsdwnp~~d 813 (1157)
T KOG0386|consen 801 VIIFDSDWNPHQD 813 (1157)
T ss_pred EEEecCCCCchhH
Confidence 9999999999764
No 14
>KOG1000|consensus
Probab=99.69 E-value=4.4e-17 Score=118.69 Aligned_cols=83 Identities=24% Similarity=0.411 Sum_probs=77.8
Q ss_pred cCccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 4 TSRSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
+..+++.|+|||.+.. .+..+++.+.||||++++.+|+.++++|+.+.+++|-++|+.|||.||++++|+.|
T Consensus 487 l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~V 566 (689)
T KOG1000|consen 487 LPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVV 566 (689)
T ss_pred cccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceE
Confidence 3467788999999988 37888999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCC
Q psy16278 76 IFVDHDWSPMK 86 (88)
Q Consensus 76 i~~d~~wnP~~ 86 (88)
+|.+++|||..
T Consensus 567 VFaEL~wnPgv 577 (689)
T KOG1000|consen 567 VFAELHWNPGV 577 (689)
T ss_pred EEEEecCCCce
Confidence 99999999975
No 15
>KOG4439|consensus
Probab=99.67 E-value=3.7e-17 Score=122.35 Aligned_cols=82 Identities=34% Similarity=0.586 Sum_probs=75.7
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCC-CCCcEEEEeccccccccCCcCCCEEE
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSD-PTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~-~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
.....|++|-|||+ ++...|..|..++|.+...+|+..++.|+.. ++.+|+|+|..+||.||||++|||+|
T Consensus 743 ~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHli 822 (901)
T KOG4439|consen 743 TSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLI 822 (901)
T ss_pred hcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEE
Confidence 45678999999999 4788899999999999999999999999984 45899999999999999999999999
Q ss_pred EeCCCCCCCCC
Q psy16278 77 FVDHDWSPMKL 87 (88)
Q Consensus 77 ~~d~~wnP~~~ 87 (88)
++|++|||+.|
T Consensus 823 lvDlHWNPaLE 833 (901)
T KOG4439|consen 823 LVDLHWNPALE 833 (901)
T ss_pred EEecccCHHHH
Confidence 99999999876
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.65 E-value=1.8e-16 Score=122.84 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=69.7
Q ss_pred CCCceEEEEeecc--------c-ccCCCeEEEEECCCCHHHHHHHHHhccCCC-CCcEEEEeccccccccCCcCCCEEEE
Q psy16278 8 EVHRPKTSSKYTT--------C-EMPGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l-~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~-~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+.|+|||+++.. | ...|+++..++|+++..+|.++++.|++.+ .+.| |+++++||+|+|++.|++||+
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEE
Confidence 4789999999992 5 567999999999999999999999999854 5555 567799999999999999999
Q ss_pred eCCCCCCCCC
Q psy16278 78 VDHDWSPMKL 87 (88)
Q Consensus 78 ~d~~wnP~~~ 87 (88)
||+||||...
T Consensus 571 fDlP~nP~~~ 580 (956)
T PRK04914 571 FDLPFNPDLL 580 (956)
T ss_pred ecCCCCHHHH
Confidence 9999999754
No 17
>KOG1001|consensus
Probab=99.58 E-value=1.6e-17 Score=124.93 Aligned_cols=78 Identities=32% Similarity=0.538 Sum_probs=74.6
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCC
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~w 82 (88)
|+||||||. .+...++.+.+++|.++...|.+.+..|..++...++++|.+|||.||||++|+||+.+||+|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 999999999 366889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy16278 83 SPMKLE 88 (88)
Q Consensus 83 nP~~~~ 88 (88)
||++||
T Consensus 621 np~~ee 626 (674)
T KOG1001|consen 621 NPAVEE 626 (674)
T ss_pred ChHHHH
Confidence 999875
No 18
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.44 E-value=1.7e-13 Score=77.21 Aligned_cols=64 Identities=34% Similarity=0.605 Sum_probs=57.5
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCCCCC
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wnP~~ 86 (88)
|...++++..++|+++..+|+++++.|+.... . +|+++.+++.|+|+..+++|++++++|||..
T Consensus 3 L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~-~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~ 66 (78)
T PF00271_consen 3 LEKKGIKVAIIHGDMSQKERQEILKKFNSGEI-R-VLIATDILGEGIDLPDASHVIFYDPPWSPEE 66 (78)
T ss_dssp HHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS-S-EEEESCGGTTSSTSTTESEEEESSSESSHHH
T ss_pred hHHCCCcEEEEECCCCHHHHHHHHHHhhccCc-e-EEEeeccccccccccccccccccccCCCHHH
Confidence 56789999999999999999999999999555 3 5777899999999999999999999999853
No 19
>KOG1016|consensus
Probab=99.35 E-value=1.1e-12 Score=99.95 Aligned_cols=81 Identities=31% Similarity=0.520 Sum_probs=72.2
Q ss_pred cCCCceEEEEeec--------------------------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCc-EEEEe
Q psy16278 7 SEVHRPKTSSKYT--------------------------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VLLLT 59 (88)
Q Consensus 7 ~~g~k~liFs~~~--------------------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~-v~lls 59 (88)
.-|.|.|||||-. .-+.++.+|.++||.++..+|.+++++|+..+++. .|++|
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlflls 796 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLS 796 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeeh
Confidence 3578999999976 13555778999999999999999999999988887 79999
Q ss_pred ccccccccCCcCCCEEEEeCCCCCCCCC
Q psy16278 60 TQVGGLGLNLTGADTVIFVDHDWSPMKL 87 (88)
Q Consensus 60 ~~~~~~Gl~L~~a~~vi~~d~~wnP~~~ 87 (88)
+++|..|+||..||+|+++|-.|||+.+
T Consensus 797 trag~lGinLIsanr~~ifda~wnpchd 824 (1387)
T KOG1016|consen 797 TRAGSLGINLISANRCIIFDACWNPCHD 824 (1387)
T ss_pred hccccccceeeccceEEEEEeecCcccc
Confidence 9999999999999999999999999854
No 20
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.27 E-value=2.9e-11 Score=72.83 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
++.++|||+.... +...+.++..++|+++..+|...++.|+... . .+|+++.+.++|+|+..+++|++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~-~ili~t~~~~~G~d~~~~~~vi~~~ 104 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE-I-VVLVATDVIARGIDLPNVSVVINYD 104 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC-C-cEEEEcChhhcCcChhhCCEEEEeC
Confidence 5789999998872 5556889999999999999999999999855 3 3577889999999999999999999
Q ss_pred CCCCCCC
Q psy16278 80 HDWSPMK 86 (88)
Q Consensus 80 ~~wnP~~ 86 (88)
++|++..
T Consensus 105 ~~~~~~~ 111 (131)
T cd00079 105 LPWSPSS 111 (131)
T ss_pred CCCCHHH
Confidence 9999854
No 21
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.26 E-value=2.3e-11 Score=67.87 Aligned_cols=64 Identities=36% Similarity=0.600 Sum_probs=56.4
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCCCCC
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wnP~~ 86 (88)
+...++.+..++|++++.+|.+.++.|+.... .+|+++.+++.|+|+..+++|++++++|++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~ 70 (82)
T smart00490 7 LKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPAS 70 (82)
T ss_pred HHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHH
Confidence 34458899999999999999999999998544 46788899999999999999999999999853
No 22
>PRK13766 Hef nuclease; Provisional
Probab=99.25 E-value=2.4e-11 Score=92.56 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=68.0
Q ss_pred cCCCceEEEEeecc--------cccCCCeEEEEECC--------CCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc
Q psy16278 7 SEVHRPKTSSKYTT--------CEMPGVTYLRLDGS--------VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~~~~~~~~~~G~--------~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~ 70 (88)
.++.|+|||+++.+ |...++++..++|. +++.+|.+++++|+.. ...+ |+++.++++|+|+.
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-~~~v-LvaT~~~~eGldi~ 440 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-EFNV-LVSTSVAEEGLDIP 440 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-CCCE-EEECChhhcCCCcc
Confidence 57889999999983 66778999999987 8999999999999984 4455 67779999999999
Q ss_pred CCCEEEEeCCCCCCCC
Q psy16278 71 GADTVIFVDHDWSPMK 86 (88)
Q Consensus 71 ~a~~vi~~d~~wnP~~ 86 (88)
.+++||+|||+|||..
T Consensus 441 ~~~~VI~yd~~~s~~r 456 (773)
T PRK13766 441 SVDLVIFYEPVPSEIR 456 (773)
T ss_pred cCCEEEEeCCCCCHHH
Confidence 9999999999999853
No 23
>KOG0331|consensus
Probab=99.23 E-value=3.7e-11 Score=88.39 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=67.0
Q ss_pred ccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 6 RSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 6 ~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
...+.|+|||++..+ +...+++...++|..++++|...++.|++... . +|++|+++++|||+...++||.
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~-~-vLVATdVAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKS-P-VLVATDVAARGLDVPDVDLVIN 415 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCc-c-eEEEcccccccCCCccccEEEe
Confidence 456779999999993 56667999999999999999999999998443 3 5778899999999999999999
Q ss_pred eCCCCCC
Q psy16278 78 VDHDWSP 84 (88)
Q Consensus 78 ~d~~wnP 84 (88)
||+|-|.
T Consensus 416 ydfP~~v 422 (519)
T KOG0331|consen 416 YDFPNNV 422 (519)
T ss_pred CCCCCCH
Confidence 9999664
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.10 E-value=3.5e-10 Score=81.18 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=66.8
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...|+|||++.. .|...|++...++|++++++|.++++.|++ +.+++ |++|+++++|+|+...++||+||
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~-g~~~v-LVaTdv~~rGiDip~v~~VI~~d 331 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR-GDLDI-LVATDVAARGLHIPAVTHVFNYD 331 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc-CCCcE-EEEechhhcCCCccccCEEEEeC
Confidence 467999999987 366779999999999999999999999988 44454 77779999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
+|+++.
T Consensus 332 ~P~s~~ 337 (423)
T PRK04837 332 LPDDCE 337 (423)
T ss_pred CCCchh
Confidence 998874
No 25
>PTZ00110 helicase; Provisional
Probab=99.09 E-value=3.5e-10 Score=83.93 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
++.|+|||++.. .|...+++...++|++++++|.++++.|+.. ...| |++|+++++|||+..+++||++|
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~~I-LVaTdv~~rGIDi~~v~~VI~~d 453 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KSPI-MIATDVASRGLDVKDVKYVINFD 453 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CCcE-EEEcchhhcCCCcccCCEEEEeC
Confidence 678999999988 3667789999999999999999999999984 4444 78889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
+++++.
T Consensus 454 ~P~s~~ 459 (545)
T PTZ00110 454 FPNQIE 459 (545)
T ss_pred CCCCHH
Confidence 998763
No 26
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.7e-10 Score=83.36 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=65.2
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCC
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~w 82 (88)
++|||++-. .|...|++...++|++++++|.+.++.|++ ...+| |++|+++++|||+...++||+||++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~-g~~~v-LVaTDvaaRGiDi~~v~~VinyD~p~ 352 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD-GELRV-LVATDVAARGLDIPDVSHVINYDLPL 352 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc-CCCCE-EEEechhhccCCccccceeEEccCCC
Confidence 699999977 488889999999999999999999999996 55555 66679999999999999999999997
Q ss_pred CCC
Q psy16278 83 SPM 85 (88)
Q Consensus 83 nP~ 85 (88)
+|.
T Consensus 353 ~~e 355 (513)
T COG0513 353 DPE 355 (513)
T ss_pred CHH
Confidence 763
No 27
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=3e-10 Score=86.59 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=60.5
Q ss_pred cCCCceEEEEeecc-----cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 7 SEVHRPKTSSKYTT-----CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 7 ~~g~k~liFs~~~~-----l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
..|.|+|||+++.. ....+ ...++|+++..+|.++++.|+..+.+.++++| ++|++|+|+..|++||+++++
T Consensus 494 ~~g~kiLVF~~~~~~l~~~a~~L~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-kVgdeGIDlP~a~vvI~~s~~ 570 (732)
T TIGR00603 494 QRGDKIIVFSDNVFALKEYAIKLG--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS-KVGDTSIDLPEANVLIQISSH 570 (732)
T ss_pred hcCCeEEEEeCCHHHHHHHHHHcC--CceEECCCCHHHHHHHHHHHHhCCCccEEEEe-cccccccCCCCCCEEEEeCCC
Confidence 47889999999872 11223 34589999999999999999976676776665 999999999999999999988
Q ss_pred C
Q psy16278 82 W 82 (88)
Q Consensus 82 w 82 (88)
+
T Consensus 571 ~ 571 (732)
T TIGR00603 571 Y 571 (732)
T ss_pred C
Confidence 6
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.03 E-value=8.7e-10 Score=82.29 Aligned_cols=78 Identities=26% Similarity=0.349 Sum_probs=67.9
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
..++.++|||++.. .|...+++...++|+++..+|.++++.|++ ...+| |++|+++++|||+...++||+
T Consensus 254 ~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~-G~~~V-LVaTdv~arGIDip~V~~VIn 331 (572)
T PRK04537 254 RSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK-GQLEI-LVATDVAARGLHIDGVKYVYN 331 (572)
T ss_pred cccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc-CCCeE-EEEehhhhcCCCccCCCEEEE
Confidence 34678999999987 367779999999999999999999999997 44444 777899999999999999999
Q ss_pred eCCCCCCC
Q psy16278 78 VDHDWSPM 85 (88)
Q Consensus 78 ~d~~wnP~ 85 (88)
||+++++.
T Consensus 332 yd~P~s~~ 339 (572)
T PRK04537 332 YDLPFDAE 339 (572)
T ss_pred cCCCCCHH
Confidence 99998863
No 29
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.03 E-value=1.2e-09 Score=78.49 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=66.5
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
+..++|||++.. .|...+++...++|+++..+|.++++.|+. +.+.| |++++++++|+|+...++||++|
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~-G~~~v-LVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD-GRVNV-LVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC-CCCcE-EEEccccccCccCCCCCEEEEEC
Confidence 567999999988 366779999999999999999999999997 45555 67779999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
+++++.
T Consensus 322 ~p~s~~ 327 (434)
T PRK11192 322 MPRSAD 327 (434)
T ss_pred CCCCHH
Confidence 998753
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.99 E-value=1.8e-09 Score=78.42 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=66.3
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...++|||++.. .|...+++...++|++++++|.++++.|++ ..++| |++|+++++|+|+.+.++||+|+
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~-g~~~i-LVaTdv~~rGiDip~v~~VI~~~ 321 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS-GDIRV-LVATDIAARGLDIEELPHVVNYE 321 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc-CCCcE-EEEccHHhcCCCcccCCEEEEeC
Confidence 456999999987 367778999999999999999999999998 44455 67889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++.++.
T Consensus 322 ~P~~~~ 327 (456)
T PRK10590 322 LPNVPE 327 (456)
T ss_pred CCCCHH
Confidence 998763
No 31
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.96 E-value=2.7e-09 Score=77.32 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=66.7
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.++|||++.. .|...++....++|++++.+|..+++.|++ ...++ |++|+++++|+|+.+.++||+++
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~-g~~~v-LVaTdv~~rGiDi~~v~~VI~~d 318 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN-RSCSV-LVATDVAARGLDIKALEAVINYE 318 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEEecccccccchhcCCeEEEec
Confidence 456899999987 377789999999999999999999999997 44555 67789999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++.++.
T Consensus 319 ~p~~~~ 324 (460)
T PRK11776 319 LARDPE 324 (460)
T ss_pred CCCCHh
Confidence 998764
No 32
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.96 E-value=3e-09 Score=77.50 Aligned_cols=76 Identities=24% Similarity=0.302 Sum_probs=66.0
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...|+|||++.. .|...++....++|+++.++|.++++.|++. ..++ |++|.++++|+|+.+.++||+++
T Consensus 334 ~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~v-LvaT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRV-LVATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcE-EEEccccccCCcccCCCEEEEeC
Confidence 456999999988 3667789999999999999999999999983 4444 77889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
+++++.
T Consensus 412 ~P~s~~ 417 (475)
T PRK01297 412 LPEDPD 417 (475)
T ss_pred CCCCHH
Confidence 998764
No 33
>KOG0330|consensus
Probab=98.92 E-value=2.8e-09 Score=76.41 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=65.8
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..|.-+|||++.. -|...|++...++|.|++..|..++++|+. ..+.| |+++++|++|||.+.+++||+|
T Consensus 298 ~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-~~r~i-Lv~TDVaSRGLDip~Vd~VVNy 375 (476)
T KOG0330|consen 298 LAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-GARSI-LVCTDVASRGLDIPHVDVVVNY 375 (476)
T ss_pred hcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc-cCCcE-EEecchhcccCCCCCceEEEec
Confidence 4567899999977 278889999999999999999999999999 55555 7788999999999999999999
Q ss_pred CCCCC
Q psy16278 79 DHDWS 83 (88)
Q Consensus 79 d~~wn 83 (88)
|-|-+
T Consensus 376 DiP~~ 380 (476)
T KOG0330|consen 376 DIPTH 380 (476)
T ss_pred CCCCc
Confidence 98743
No 34
>KOG0328|consensus
Probab=98.89 E-value=3.4e-09 Score=73.78 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=65.7
Q ss_pred CceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 10 HRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 10 ~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+++||++-. ++...++....++|.++.++|.+++..|+...+ + +|+++++-++|++.+..|.||.||+|
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~S-r-vLitTDVwaRGiDv~qVslviNYDLP 344 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKS-R-VLITTDVWARGIDVQQVSLVINYDLP 344 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCc-e-EEEEechhhccCCcceeEEEEecCCC
Confidence 4689999987 477789999999999999999999999999554 3 58899999999999999999999999
Q ss_pred CCCC
Q psy16278 82 WSPM 85 (88)
Q Consensus 82 wnP~ 85 (88)
-|+.
T Consensus 345 ~nre 348 (400)
T KOG0328|consen 345 NNRE 348 (400)
T ss_pred ccHH
Confidence 8763
No 35
>KOG0333|consensus
Probab=98.88 E-value=7e-09 Score=76.70 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=63.5
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
....+|||.++. .|...|++.++++|+-++++|..++..|+.... . +|++|+++|+||++.+.++||.||
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~-d-IlVaTDvAgRGIDIpnVSlVinyd 593 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTG-D-ILVATDVAGRGIDIPNVSLVINYD 593 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCC-C-EEEEecccccCCCCCccceeeecc
Confidence 357899999999 388899999999999999999999999998333 2 477789999999999999999998
Q ss_pred CC
Q psy16278 80 HD 81 (88)
Q Consensus 80 ~~ 81 (88)
..
T Consensus 594 ma 595 (673)
T KOG0333|consen 594 MA 595 (673)
T ss_pred hh
Confidence 64
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=8.6e-09 Score=75.17 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=66.2
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.++|||+... .|...|++...++|++++++|.++++.|.. +.++| |++|.+.+.|+|+.+.++||++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~-g~~~v-LVaT~~~~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR-DEIQV-VVATVAFGMGINKPDVRFVIHY 301 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc-CCCcE-EEEechhhccCCcccceEEEEe
Confidence 3567789999987 377789999999999999999999999997 45555 6777999999999999999999
Q ss_pred CCCCCC
Q psy16278 79 DHDWSP 84 (88)
Q Consensus 79 d~~wnP 84 (88)
++|.++
T Consensus 302 ~~P~s~ 307 (470)
T TIGR00614 302 SLPKSM 307 (470)
T ss_pred CCCCCH
Confidence 999775
No 37
>KOG0383|consensus
Probab=98.83 E-value=2.4e-10 Score=86.55 Aligned_cols=62 Identities=32% Similarity=0.523 Sum_probs=55.1
Q ss_pred cCccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccC-CCCCcEEEEeccccccc
Q psy16278 4 TSRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~-~~~~~v~lls~~~~~~G 66 (88)
.+.+.||||+||||+.. +...+ .|.++||..+...|+.++++|+. +...++||+|+++||.|
T Consensus 626 ~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 626 KLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 46789999999999993 56667 99999999999999999999996 55677899999999987
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.83 E-value=1.4e-08 Score=76.18 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=66.4
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||++.. .|...+++...++|++++++|.++++.|..+ ..+| |++|.+.+.|+|+.+.++||++
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~V-LVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQI-VVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCE-EEEechhhccCCCCCcCEEEEe
Confidence 4678999999988 3777899999999999999999999999884 4444 6777999999999999999999
Q ss_pred CCCCCC
Q psy16278 79 DHDWSP 84 (88)
Q Consensus 79 d~~wnP 84 (88)
++|.++
T Consensus 312 d~P~s~ 317 (607)
T PRK11057 312 DIPRNI 317 (607)
T ss_pred CCCCCH
Confidence 998764
No 39
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.82 E-value=1.9e-08 Score=74.24 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=63.3
Q ss_pred CCceEEEEeecc--------cc-cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 9 VHRPKTSSKYTT--------CE-MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 9 g~k~liFs~~~~--------l~-~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
..++|||++... +. ..+++...++|+++.++|.++++.|+. +..+| |++|+++++|+|+.++++||++|
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~-G~~~I-LVaTdvl~rGiDip~v~~VI~~d 444 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV-GEVPV-IVATGVLGRGVDLLRVRQVIIFD 444 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC-CCCCE-EEEecHhhccCCcccCCEEEEeC
Confidence 458999999872 32 358899999999999999999999998 44555 77889999999999999999999
Q ss_pred CCCCC
Q psy16278 80 HDWSP 84 (88)
Q Consensus 80 ~~wnP 84 (88)
++.++
T Consensus 445 ~P~s~ 449 (518)
T PLN00206 445 MPNTI 449 (518)
T ss_pred CCCCH
Confidence 98764
No 40
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.79 E-value=1.8e-08 Score=74.03 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=60.1
Q ss_pred ccCCCceEEEEeecc--------cccCCCeEE-E--------EECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccC
Q psy16278 6 RSEVHRPKTSSKYTT--------CEMPGVTYL-R--------LDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN 68 (88)
Q Consensus 6 ~~~g~k~liFs~~~~--------l~~~~~~~~-~--------~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~ 68 (88)
+.++.|+|||++|+. |...+.... + -+.+|++.+..+++++|+. +...| |++|..|-+|||
T Consensus 363 k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-Ge~nV-LVaTSVgEEGLD 440 (542)
T COG1111 363 KNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-GEYNV-LVATSVGEEGLD 440 (542)
T ss_pred cCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc-CCceE-EEEcccccccCC
Confidence 566789999999992 444444432 3 3457999999999999999 55566 777899999999
Q ss_pred CcCCCEEEEeCCC
Q psy16278 69 LTGADTVIFVDHD 81 (88)
Q Consensus 69 L~~a~~vi~~d~~ 81 (88)
+...+.||||||.
T Consensus 441 Ip~vDlVifYEpv 453 (542)
T COG1111 441 IPEVDLVIFYEPV 453 (542)
T ss_pred CCcccEEEEecCC
Confidence 9999999999997
No 41
>PTZ00424 helicase 45; Provisional
Probab=98.79 E-value=3.6e-08 Score=69.87 Aligned_cols=75 Identities=21% Similarity=0.249 Sum_probs=64.7
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...++|||++.. .+...++....++|+++.++|..+++.|++ +..+| |++|.+.++|+|+...++||+++
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~-g~~~v-LvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS-GSTRV-LITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc-CCCCE-EEEcccccCCcCcccCCEEEEEC
Confidence 456899999877 256678899999999999999999999997 44555 77889999999999999999999
Q ss_pred CCCCC
Q psy16278 80 HDWSP 84 (88)
Q Consensus 80 ~~wnP 84 (88)
++.++
T Consensus 344 ~p~s~ 348 (401)
T PTZ00424 344 LPASP 348 (401)
T ss_pred CCCCH
Confidence 98765
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.78 E-value=2.7e-08 Score=75.15 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
+..++|||++-. .|...++....++|.+++.+|.++++.|+. .... +|++|+++++|+|+...++||+||
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~-G~~~-ILVATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD-GRLD-ILIATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC-CCCC-EEEEcchHhcCCCcccCCEEEEeC
Confidence 346899999877 377789999999999999999999999998 4444 478889999999999999999999
Q ss_pred CCCCC
Q psy16278 80 HDWSP 84 (88)
Q Consensus 80 ~~wnP 84 (88)
++.++
T Consensus 322 ~P~~~ 326 (629)
T PRK11634 322 IPMDS 326 (629)
T ss_pred CCCCH
Confidence 99875
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.73 E-value=4.3e-08 Score=73.24 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=65.7
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.+.|||+... .|...|++...++|+++.++|..+++.|..+. .. +|++|.+.|.|+|..+.++||+++
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~-~~-vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD-VK-VMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC-Cc-EEEEechhhccCcCCCCCEEEEcC
Confidence 467999999987 36678999999999999999999999998844 44 477789999999999999999999
Q ss_pred CCCCC
Q psy16278 80 HDWSP 84 (88)
Q Consensus 80 ~~wnP 84 (88)
++.++
T Consensus 301 ~p~s~ 305 (591)
T TIGR01389 301 MPGNL 305 (591)
T ss_pred CCCCH
Confidence 99875
No 44
>KOG0336|consensus
Probab=98.66 E-value=4.8e-08 Score=70.97 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=66.2
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.+..|+|||..-. .+...|+....++|.-.+.+|..+++.|+. ..+++ |+.++.+++||++....||+.|
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks-G~vrI-LvaTDlaSRGlDv~DiTHV~Ny 540 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS-GEVRI-LVATDLASRGLDVPDITHVYNY 540 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc-CceEE-EEEechhhcCCCchhcceeecc
Confidence 3567999999877 477789999999999999999999999998 55666 6677999999999999999999
Q ss_pred CCCCC
Q psy16278 79 DHDWS 83 (88)
Q Consensus 79 d~~wn 83 (88)
|.|-|
T Consensus 541 DFP~n 545 (629)
T KOG0336|consen 541 DFPRN 545 (629)
T ss_pred CCCcc
Confidence 99866
No 45
>KOG0345|consensus
Probab=98.62 E-value=5.7e-08 Score=71.11 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=64.8
Q ss_pred CccCCCceEEEEeec----------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCE
Q psy16278 5 SRSEVHRPKTSSKYT----------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADT 74 (88)
Q Consensus 5 ~~~~g~k~liFs~~~----------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~ 74 (88)
......|+|||-..- .-...+.++..++|.++...|.+++.+|...++. .|++++++++|||+.+.+.
T Consensus 251 ~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~--vl~~TDVaARGlDip~iD~ 328 (567)
T KOG0345|consen 251 NNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG--VLFCTDVAARGLDIPGIDL 328 (567)
T ss_pred hccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc--eEEeehhhhccCCCCCceE
Confidence 344557888885532 1125688899999999999999999999984433 5888899999999999999
Q ss_pred EEEeCCCCCCC
Q psy16278 75 VIFVDHDWSPM 85 (88)
Q Consensus 75 vi~~d~~wnP~ 85 (88)
||.+|||-+|.
T Consensus 329 VvQ~DpP~~~~ 339 (567)
T KOG0345|consen 329 VVQFDPPKDPS 339 (567)
T ss_pred EEecCCCCChh
Confidence 99999999886
No 46
>KOG0347|consensus
Probab=98.62 E-value=3.9e-08 Score=73.27 Aligned_cols=71 Identities=23% Similarity=0.308 Sum_probs=63.7
Q ss_pred CceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 10 HRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 10 ~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
-|.|||++-.. |...+++...++..|.+.+|.+.+++|.+.+++ +|+.++++++|||+.+..|||+|..|
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~--VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG--VLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe--EEEeehhhhccCCCCCcceEEEeecC
Confidence 47899999873 566788999999999999999999999998876 78889999999999999999999987
Q ss_pred C
Q psy16278 82 W 82 (88)
Q Consensus 82 w 82 (88)
-
T Consensus 542 r 542 (731)
T KOG0347|consen 542 R 542 (731)
T ss_pred C
Confidence 4
No 47
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.60 E-value=2.5e-07 Score=68.11 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=64.8
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..|.+++||+... .|...+.+...++|+++.++|.++++.|+. ....+++.+.+..++|+|+...++||++
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~-~~~~vLvaT~~~l~eG~Dip~ld~vIl~ 420 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG-GKGIIIVASYGVFSTGISIKNLHHVIFA 420 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC-CCCeEEEEEcceeccccccccccEEEEe
Confidence 4577888888776 366778999999999999999999999986 4455667777999999999999999999
Q ss_pred CCCCCC
Q psy16278 79 DHDWSP 84 (88)
Q Consensus 79 d~~wnP 84 (88)
.|.-+.
T Consensus 421 ~p~~s~ 426 (501)
T PHA02558 421 HPSKSK 426 (501)
T ss_pred cCCcch
Confidence 998543
No 48
>KOG0348|consensus
Probab=98.58 E-value=1.1e-07 Score=70.79 Aligned_cols=59 Identities=27% Similarity=0.460 Sum_probs=54.2
Q ss_pred CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCCCC
Q psy16278 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPM 85 (88)
Q Consensus 25 ~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wnP~ 85 (88)
+.++.+++|+|++++|..+.+.|..+..+ +|++++++++||||.....||-||+|..|+
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~--VLLcTDVAaRGLDlP~V~~vVQYd~P~s~a 529 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRA--VLLCTDVAARGLDLPHVGLVVQYDPPFSTA 529 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhccccce--EEEehhhhhccCCCCCcCeEEEeCCCCCHH
Confidence 56799999999999999999999997766 688999999999999999999999998764
No 49
>KOG0335|consensus
Probab=98.58 E-value=1.2e-07 Score=69.57 Aligned_cols=72 Identities=18% Similarity=0.226 Sum_probs=63.4
Q ss_pred CceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 10 HRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 10 ~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
++.+||..-.+ |...++++..++|..++.+|.++++.|.+ ..+.+ |+.+.++++|||..+..|||.||.|
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~-g~~pv-lVaT~VaaRGlDi~~V~hVInyDmP 415 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN-GKAPV-LVATNVAARGLDIPNVKHVINYDMP 415 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc-CCcce-EEEehhhhcCCCCCCCceeEEeecC
Confidence 38999999883 78889999999999999999999999999 44444 6777999999999999999999998
Q ss_pred CC
Q psy16278 82 WS 83 (88)
Q Consensus 82 wn 83 (88)
=+
T Consensus 416 ~d 417 (482)
T KOG0335|consen 416 AD 417 (482)
T ss_pred cc
Confidence 43
No 50
>KOG0332|consensus
Probab=98.53 E-value=2.4e-07 Score=66.53 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=62.9
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCC
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~w 82 (88)
..|||++-. ++...|.....++|.++.++|..++++|+.... + .|+++.++++|++....+.||.||+|-
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~-k-VLitTnV~ARGiDv~qVs~VvNydlP~ 409 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKE-K-VLITTNVCARGIDVAQVSVVVNYDLPV 409 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcc-e-EEEEechhhcccccceEEEEEecCCcc
Confidence 578999977 488889999999999999999999999999443 3 588999999999999999999999984
No 51
>KOG0344|consensus
Probab=98.53 E-value=2.7e-07 Score=68.69 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCceEEEEeec--------cc-ccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 9 VHRPKTSSKYT--------TC-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 9 g~k~liFs~~~--------~l-~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...++||.|-. .| ...+++...++|..++.+|.+.+++|+. ..+++ |++++..++|+++.++|.||+||
T Consensus 387 ~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~-g~Iwv-LicTdll~RGiDf~gvn~VInyD 464 (593)
T KOG0344|consen 387 KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI-GKIWV-LICTDLLARGIDFKGVNLVINYD 464 (593)
T ss_pred CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-cCeeE-EEehhhhhccccccCcceEEecC
Confidence 35789999977 37 7889999999999999999999999999 66666 77789999999999999999999
Q ss_pred CC
Q psy16278 80 HD 81 (88)
Q Consensus 80 ~~ 81 (88)
.+
T Consensus 465 ~p 466 (593)
T KOG0344|consen 465 FP 466 (593)
T ss_pred CC
Confidence 87
No 52
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.52 E-value=2.9e-07 Score=73.19 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=64.8
Q ss_pred CCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCC
Q psy16278 9 VHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80 (88)
Q Consensus 9 g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~ 80 (88)
+...|||+..+ .|...|++...++|++++++|..+.+.|..+ .+.| |++|.+.|.|||....+.||++++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~V-LVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINI-ICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcE-EEEechhhcCCCccCCcEEEEcCC
Confidence 56789999987 3778899999999999999999999999984 4455 677799999999999999999999
Q ss_pred CCCC
Q psy16278 81 DWSP 84 (88)
Q Consensus 81 ~wnP 84 (88)
|-++
T Consensus 758 PkSi 761 (1195)
T PLN03137 758 PKSI 761 (1195)
T ss_pred CCCH
Confidence 8664
No 53
>KOG0341|consensus
Probab=98.42 E-value=5.5e-07 Score=65.26 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=63.5
Q ss_pred CCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...+||||..-.. |...|+..+.++|+-.+++|..+++.|+....- .|+.+++++-||++.+..|||+||
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD--VLVATDVASKGLDFp~iqHVINyD 497 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD--VLVATDVASKGLDFPDIQHVINYD 497 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc--eEEEecchhccCCCccchhhccCC
Confidence 4568999999772 778899999999999999999999999985443 477789999999999999999999
Q ss_pred CC
Q psy16278 80 HD 81 (88)
Q Consensus 80 ~~ 81 (88)
.|
T Consensus 498 MP 499 (610)
T KOG0341|consen 498 MP 499 (610)
T ss_pred Ch
Confidence 86
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.40 E-value=1e-06 Score=67.13 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=60.6
Q ss_pred cCCCceEEEEeec----------------ccc--cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccC
Q psy16278 7 SEVHRPKTSSKYT----------------TCE--MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN 68 (88)
Q Consensus 7 ~~g~k~liFs~~~----------------~l~--~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~ 68 (88)
+.|++++||+... .+. ..+++...++|++++++|.+++++|.+. ... +|++|.+.++|+|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~-ILVaT~vie~GiD 546 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG-EID-ILVATTVIEVGVD 546 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCC-EEEECcceeeCcc
Confidence 4688999998632 122 2257899999999999999999999984 444 4788899999999
Q ss_pred CcCCCEEEEeCCCC
Q psy16278 69 LTGADTVIFVDHDW 82 (88)
Q Consensus 69 L~~a~~vi~~d~~w 82 (88)
+.+++.||+++++-
T Consensus 547 ip~v~~VIi~~~~r 560 (681)
T PRK10917 547 VPNATVMVIENAER 560 (681)
T ss_pred cCCCcEEEEeCCCC
Confidence 99999999999873
No 55
>KOG0338|consensus
Probab=98.37 E-value=3.7e-07 Score=67.73 Aligned_cols=72 Identities=28% Similarity=0.349 Sum_probs=62.5
Q ss_pred CCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
...+++||.+-.+ +-..|++...++|+.++.+|.+.++.|+. ..+.+ |++++++++||++.+...||+|+
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~-~eidv-LiaTDvAsRGLDI~gV~tVINy~ 502 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK-EEIDV-LIATDVASRGLDIEGVQTVINYA 502 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh-ccCCE-EEEechhhccCCccceeEEEecc
Confidence 3468999999884 45569999999999999999999999998 44444 77889999999999999999999
Q ss_pred CC
Q psy16278 80 HD 81 (88)
Q Consensus 80 ~~ 81 (88)
.|
T Consensus 503 mP 504 (691)
T KOG0338|consen 503 MP 504 (691)
T ss_pred Cc
Confidence 87
No 56
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.37 E-value=5.1e-07 Score=69.40 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=61.7
Q ss_pred CCCceEEEEeecc--------ccc--------CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcC
Q psy16278 8 EVHRPKTSSKYTT--------CEM--------PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 71 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~--------~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~ 71 (88)
.+.++|||++-++ +.. .+.+...++|++++++|.++.++|++ ...++ |++|++.++|||+..
T Consensus 270 ~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~-G~i~v-LVaTd~lerGIDI~~ 347 (742)
T TIGR03817 270 EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD-GELLG-VATTNALELGVDISG 347 (742)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc-CCceE-EEECchHhccCCccc
Confidence 4689999998872 111 14567789999999999999999998 44444 788899999999999
Q ss_pred CCEEEEeCCCCCC
Q psy16278 72 ADTVIFVDHDWSP 84 (88)
Q Consensus 72 a~~vi~~d~~wnP 84 (88)
.++||+++.|-++
T Consensus 348 vd~VI~~~~P~s~ 360 (742)
T TIGR03817 348 LDAVVIAGFPGTR 360 (742)
T ss_pred ccEEEEeCCCCCH
Confidence 9999999988543
No 57
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.33 E-value=1.6e-06 Score=67.79 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCCceEEEEeecc--------ccc------CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCC
Q psy16278 8 EVHRPKTSSKYTT--------CEM------PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD 73 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~------~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~ 73 (88)
.+.++|||++-.+ |.. .+..+..++|+++.++|..+.+.|++. ..++ |++|.+.++|+|+...+
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~v-LVaTs~Le~GIDip~Vd 360 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELKV-VVSSTSLELGIDIGYID 360 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCeE-EEECChHHhcCCCCCCc
Confidence 4678999999772 221 246788999999999999999999984 4454 77889999999999999
Q ss_pred EEEEeCCCCCC
Q psy16278 74 TVIFVDHDWSP 84 (88)
Q Consensus 74 ~vi~~d~~wnP 84 (88)
+||.+++|.++
T Consensus 361 ~VI~~~~P~sv 371 (876)
T PRK13767 361 LVVLLGSPKSV 371 (876)
T ss_pred EEEEeCCCCCH
Confidence 99999998764
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.31 E-value=3e-06 Score=66.65 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=60.6
Q ss_pred CCCceEEEEeecc--------ccc--CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 8 EVHRPKTSSKYTT--------CEM--PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~--~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.|.+++||++..+ +.. .++++..++|+++..+|.+++.+|.+. ... +|++|++.++|+|+.++++||+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~-ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQ-VLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCC-EEEECChhhcccccccCCEEEE
Confidence 4678999988662 332 478899999999999999999999984 344 4788899999999999999999
Q ss_pred eCCC
Q psy16278 78 VDHD 81 (88)
Q Consensus 78 ~d~~ 81 (88)
++.+
T Consensus 737 ~~a~ 740 (926)
T TIGR00580 737 ERAD 740 (926)
T ss_pred ecCC
Confidence 8876
No 59
>KOG0340|consensus
Probab=98.29 E-value=1.6e-06 Score=62.04 Aligned_cols=76 Identities=21% Similarity=0.242 Sum_probs=65.9
Q ss_pred CCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
+..-++||.|-.. |...++....+++.+++++|-.++.+|+. ...++ |+.++++++|||+.....|+.+|
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs-~~~~i-liaTDVAsRGLDIP~V~LVvN~d 330 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS-NAARI-LIATDVASRGLDIPTVELVVNHD 330 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh-cCccE-EEEechhhcCCCCCceeEEEecC
Confidence 5667899999872 66678889999999999999999999998 44444 77789999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
.|-.|-
T Consensus 331 iPr~P~ 336 (442)
T KOG0340|consen 331 IPRDPK 336 (442)
T ss_pred CCCCHH
Confidence 998874
No 60
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.28 E-value=3.5e-06 Score=63.73 Aligned_cols=74 Identities=18% Similarity=0.317 Sum_probs=60.6
Q ss_pred cCCCceEEEEeec----------------ccc--cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccC
Q psy16278 7 SEVHRPKTSSKYT----------------TCE--MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN 68 (88)
Q Consensus 7 ~~g~k~liFs~~~----------------~l~--~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~ 68 (88)
..|++++||+... .+. ..+++...++|++++++|.++++.|++. ..+| |++|.+.++|+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~I-LVaT~vie~GvD 523 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVDI-LVATTVIEVGVD 523 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCE-EEECceeecCcc
Confidence 4678999998643 121 3578899999999999999999999983 4444 777899999999
Q ss_pred CcCCCEEEEeCCCC
Q psy16278 69 LTGADTVIFVDHDW 82 (88)
Q Consensus 69 L~~a~~vi~~d~~w 82 (88)
+.+++.||+++++.
T Consensus 524 iP~v~~VIi~~~~r 537 (630)
T TIGR00643 524 VPNATVMVIEDAER 537 (630)
T ss_pred cCCCcEEEEeCCCc
Confidence 99999999999873
No 61
>KOG0342|consensus
Probab=98.26 E-value=9.2e-07 Score=65.02 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=66.3
Q ss_pred CceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 10 HRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 10 ~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.|++||..-- -|....+++..++|+.++..|-....+|.++.+. +|++++++++|+|+.+.+-|+-|+||
T Consensus 331 ~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg--IL~cTDVaARGlD~P~V~~VvQ~~~P 408 (543)
T KOG0342|consen 331 YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG--ILVCTDVAARGLDIPDVDWVVQYDPP 408 (543)
T ss_pred ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc--eEEecchhhccCCCCCceEEEEeCCC
Confidence 7999998755 2677889999999999999999999999987665 78899999999999999999999999
Q ss_pred CCCC
Q psy16278 82 WSPM 85 (88)
Q Consensus 82 wnP~ 85 (88)
=+|.
T Consensus 409 ~d~~ 412 (543)
T KOG0342|consen 409 SDPE 412 (543)
T ss_pred CCHH
Confidence 8774
No 62
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.19 E-value=4.8e-06 Score=66.73 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=58.4
Q ss_pred CCceEEEEeec--------cccc--CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 9 VHRPKTSSKYT--------TCEM--PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 9 g~k~liFs~~~--------~l~~--~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
|.+++||++-. .|.. .+.++..++|+++.++|.+++.+|.+ ....| |++|++.++|+|+.++++||+.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~-Gk~~V-LVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh-cCCCE-EEECchhhcccccccCCEEEEe
Confidence 56899998754 2332 36789999999999999999999998 44455 7788999999999999999987
Q ss_pred CCC
Q psy16278 79 DHD 81 (88)
Q Consensus 79 d~~ 81 (88)
+++
T Consensus 887 ~ad 889 (1147)
T PRK10689 887 RAD 889 (1147)
T ss_pred cCC
Confidence 665
No 63
>KOG0350|consensus
Probab=98.18 E-value=1.9e-06 Score=63.73 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=59.9
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
...|.|+|++... ....+.++..++|..+.+.|.+.+.+|.... +.+ |++++++++|+|+...+.|
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~-i~v-LIcSD~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGD-INV-LICSDALARGIDVNDVDNV 505 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCC-ceE-EEehhhhhcCCcccccceE
Confidence 4578999999872 2334555666999999999999999999944 444 7777999999999999999
Q ss_pred EEeCCCC
Q psy16278 76 IFVDHDW 82 (88)
Q Consensus 76 i~~d~~w 82 (88)
|.||||-
T Consensus 506 INYd~P~ 512 (620)
T KOG0350|consen 506 INYDPPA 512 (620)
T ss_pred eecCCCc
Confidence 9999984
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.16 E-value=9.7e-06 Score=65.14 Aligned_cols=70 Identities=19% Similarity=0.094 Sum_probs=58.9
Q ss_pred cCCCceEEEEeec-----------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe---ccccccccCCcC-
Q psy16278 7 SEVHRPKTSSKYT-----------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG- 71 (88)
Q Consensus 7 ~~g~k~liFs~~~-----------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls---~~~~~~Gl~L~~- 71 (88)
.-|.++|||++-. .|...|++...++|+++ ++.+++|++ +.+.|++.+ ++.+++|||+..
T Consensus 324 ~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~-G~~~vLVata~~tdv~aRGIDip~~ 398 (1171)
T TIGR01054 324 KLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAE-GEIDVLIGVASYYGTLVRGLDLPER 398 (1171)
T ss_pred HcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHc-CCCCEEEEeccccCcccccCCCCcc
Confidence 3467899999875 37778999999999986 378999998 667777765 689999999998
Q ss_pred CCEEEEeCCC
Q psy16278 72 ADTVIFVDHD 81 (88)
Q Consensus 72 a~~vi~~d~~ 81 (88)
.++||||++|
T Consensus 399 V~~vI~~~~P 408 (1171)
T TIGR01054 399 VRYAVFLGVP 408 (1171)
T ss_pred ccEEEEECCC
Confidence 7999999998
No 65
>KOG0298|consensus
Probab=98.13 E-value=7.2e-07 Score=71.13 Aligned_cols=78 Identities=24% Similarity=0.233 Sum_probs=62.0
Q ss_pred cCccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 4 TSRSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 4 ~~~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
..+.+-.|+|+||||. ++...++.+.+-.+ .++-...+..|+. +.+|++-...++-||||..|.||
T Consensus 1216 K~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hv 1289 (1394)
T KOG0298|consen 1216 KFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHV 1289 (1394)
T ss_pred hccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc---ceEEEEEeccCcccccHHhhhhh
Confidence 3456678999999999 35556666544443 3466677777876 67799999999999999999999
Q ss_pred EEeCCCCCCCCC
Q psy16278 76 IFVDHDWSPMKL 87 (88)
Q Consensus 76 i~~d~~wnP~~~ 87 (88)
++++|..||+.|
T Consensus 1290 fl~ePiLN~~~E 1301 (1394)
T KOG0298|consen 1290 FLVEPILNPGDE 1301 (1394)
T ss_pred heeccccCchHH
Confidence 999999999875
No 66
>KOG0327|consensus
Probab=98.11 E-value=7e-06 Score=58.80 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=64.8
Q ss_pred CceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 10 HRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 10 ~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
..++||.+-. .|..+++...-++|.+...+|...++.|+...+ + +|++++..++|++++..+-|++|++|
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gss-r-vlIttdl~argidv~~~slvinydlP 341 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSS-R-VLITTDLLARGIDVQQVSLVVNYDLP 341 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCc-e-EEeeccccccccchhhcceeeeeccc
Confidence 4678999877 488889999999999999999999999999444 3 48888999999999999999999998
Q ss_pred CCCC
Q psy16278 82 WSPM 85 (88)
Q Consensus 82 wnP~ 85 (88)
=|+.
T Consensus 342 ~~~~ 345 (397)
T KOG0327|consen 342 ARKE 345 (397)
T ss_pred cchh
Confidence 6543
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.09 E-value=1.5e-05 Score=55.94 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=54.5
Q ss_pred CCCceEEEEeecc--------cccCCC--eEEEEECCCCHHHHHHH----HHhccCCCCCcEEEEeccccccccCCcCCC
Q psy16278 8 EVHRPKTSSKYTT--------CEMPGV--TYLRLDGSVVSTARHAI----VTKFNSDPTIDVLLLTTQVGGLGLNLTGAD 73 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~~~~--~~~~~~G~~~~~~R~~~----v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~ 73 (88)
.+.++|||++..+ |...+. ....++|++++.+|.+. ++.|++ ...+ +|++|+++++|+|+ .++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~-~~~~-ilvaT~~~~~GiDi-~~~ 297 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK-NEKF-VIVATQVIEASLDI-SAD 297 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC-CCCe-EEEECcchhceecc-CCC
Confidence 5689999999872 433343 58899999999999764 888987 3333 57888999999999 578
Q ss_pred EEEEeCCC
Q psy16278 74 TVIFVDHD 81 (88)
Q Consensus 74 ~vi~~d~~ 81 (88)
.+|.+..+
T Consensus 298 ~vi~~~~~ 305 (358)
T TIGR01587 298 VMITELAP 305 (358)
T ss_pred EEEEcCCC
Confidence 88876543
No 68
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.06 E-value=1.3e-05 Score=62.14 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=62.2
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc---CCC--
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---GAD-- 73 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~---~a~-- 73 (88)
..+.++|||++.. .|...|++...++|.+..++|......++.. . ++++|..+|+|+|+. ..+
T Consensus 426 ~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~-VlIATdmAgRG~DI~l~~~V~~~ 501 (790)
T PRK09200 426 ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---A-VTVATNMAGRGTDIKLGEGVHEL 501 (790)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---e-EEEEccchhcCcCCCcccccccc
Confidence 4688999999988 3788899999999999988888887777642 2 578889999999994 677
Q ss_pred ---EEEEeCCCCCC
Q psy16278 74 ---TVIFVDHDWSP 84 (88)
Q Consensus 74 ---~vi~~d~~wnP 84 (88)
|||.+|+|-++
T Consensus 502 GGL~VI~~d~p~s~ 515 (790)
T PRK09200 502 GGLAVIGTERMESR 515 (790)
T ss_pred cCcEEEeccCCCCH
Confidence 99999998665
No 69
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.04 E-value=2.1e-05 Score=59.85 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=63.1
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..|.++|||+... .|...|+++..++|.++..+|.+++..|+. +... +++++...++|+++..++.|+++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~-g~i~-vlV~t~~L~rGfdlp~v~lVii~ 521 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFD-VLVGINLLREGLDIPEVSLVAIL 521 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc-CCce-EEEEeCHHhCCccccCCcEEEEe
Confidence 4688999999877 377779999999999999999999999987 3344 46777999999999999999999
Q ss_pred CCC
Q psy16278 79 DHD 81 (88)
Q Consensus 79 d~~ 81 (88)
|.+
T Consensus 522 d~e 524 (652)
T PRK05298 522 DAD 524 (652)
T ss_pred CCc
Confidence 975
No 70
>PRK09401 reverse gyrase; Reviewed
Probab=98.03 E-value=1.3e-05 Score=64.42 Aligned_cols=70 Identities=17% Similarity=0.015 Sum_probs=57.4
Q ss_pred cCCCceEEEEeec-----------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe---ccccccccCCcC-
Q psy16278 7 SEVHRPKTSSKYT-----------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG- 71 (88)
Q Consensus 7 ~~g~k~liFs~~~-----------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls---~~~~~~Gl~L~~- 71 (88)
.-|..+|||++.. .|...|++...++|++ .+.+++|.+ +.+.|++.+ ++.+++|||+..
T Consensus 326 ~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~-G~~~VLVatas~tdv~aRGIDiP~~ 399 (1176)
T PRK09401 326 RLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE-GEVDVLVGVASYYGVLVRGIDLPER 399 (1176)
T ss_pred hcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC-CCCCEEEEecCCCCceeecCCCCcc
Confidence 3456899999864 2677899999999998 234699998 666777765 799999999998
Q ss_pred CCEEEEeCCCC
Q psy16278 72 ADTVIFVDHDW 82 (88)
Q Consensus 72 a~~vi~~d~~w 82 (88)
..+||||+.|-
T Consensus 400 IryVI~y~vP~ 410 (1176)
T PRK09401 400 IRYAIFYGVPK 410 (1176)
T ss_pred eeEEEEeCCCC
Confidence 89999999983
No 71
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.02 E-value=3.1e-05 Score=56.51 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=61.4
Q ss_pred CCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.+++||+.... +...++ ...++|.++..+|.++++.|+... .. .|++.+++.+|+|+.+|+.+|++.
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~-~~-~lv~~~vl~EGvDiP~~~~~i~~~ 358 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG-IK-VLVTVKVLDEGVDIPDADVLIILR 358 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC-CC-EEEEeeeccceecCCCCcEEEEeC
Confidence 5789999999982 455555 789999999999999999999955 44 477779999999999999999998
Q ss_pred CCC
Q psy16278 80 HDW 82 (88)
Q Consensus 80 ~~w 82 (88)
|.=
T Consensus 359 ~t~ 361 (442)
T COG1061 359 PTG 361 (442)
T ss_pred CCC
Confidence 853
No 72
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.01 E-value=1.5e-05 Score=62.21 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=57.3
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHH-----HHHHhccC----CC-----CCcEEEEecccc
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARH-----AIVTKFNS----DP-----TIDVLLLTTQVG 63 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~-----~~v~~F~~----~~-----~~~v~lls~~~~ 63 (88)
...+.++|||++.. .|...++ ..++|++++.+|. +++++|+. .. ....+|++|+++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 35678999999988 2555555 8999999999999 78999976 11 112468899999
Q ss_pred ccccCCcCCCEEEEeCCCC
Q psy16278 64 GLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 64 ~~Gl~L~~a~~vi~~d~~w 82 (88)
++|||+.. ++||....++
T Consensus 347 erGLDId~-d~VI~d~aP~ 364 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAPF 364 (844)
T ss_pred hhcccCCc-ceEEECCCCH
Confidence 99999975 8888866544
No 73
>KOG4284|consensus
Probab=98.01 E-value=5.8e-06 Score=63.09 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=62.5
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCC
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~w 82 (88)
++|||+.-. .|...|+...-|.|.|++.+|..+++++++ -.++| |++++..++|+|-..+|.||.+|++-
T Consensus 274 QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~-f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~ 351 (980)
T KOG4284|consen 274 QALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA-FRVRI-LVSTDLTARGIDADNVNLVVNIDAPA 351 (980)
T ss_pred HHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh-ceEEE-EEecchhhccCCccccceEEecCCCc
Confidence 577888765 388889999999999999999999999988 55666 77889999999999999999999984
Q ss_pred C
Q psy16278 83 S 83 (88)
Q Consensus 83 n 83 (88)
+
T Consensus 352 d 352 (980)
T KOG4284|consen 352 D 352 (980)
T ss_pred c
Confidence 4
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=97.99 E-value=2.2e-05 Score=59.91 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=56.4
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc---CCC---
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---GAD--- 73 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~---~a~--- 73 (88)
.+..+|||++.. .|...|++...++|... +|...+..|...+. . ++++|..+|+|+|+. ...
T Consensus 472 ~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g-~-VlVATdmAgRGtDI~l~~~V~~~G 547 (656)
T PRK12898 472 QGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG-R-ITVATNMAGRGTDIKLEPGVAARG 547 (656)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC-c-EEEEccchhcccCcCCccchhhcC
Confidence 467899999987 37888999999999865 55555555554333 2 578889999999998 444
Q ss_pred --EEEEeCCCCCC
Q psy16278 74 --TVIFVDHDWSP 84 (88)
Q Consensus 74 --~vi~~d~~wnP 84 (88)
|||.+|.|-++
T Consensus 548 GLhVI~~d~P~s~ 560 (656)
T PRK12898 548 GLHVILTERHDSA 560 (656)
T ss_pred CCEEEEcCCCCCH
Confidence 99999998664
No 75
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.94 E-value=3.2e-05 Score=59.02 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=62.8
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..|.++|||+.-. .|...|+++..++|.++..+|.+++..|+. +... +|+++...++|+++..++.|+++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~-G~i~-VLV~t~~L~rGfDiP~v~lVvi~ 517 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL-GEFD-VLVGINLLREGLDLPEVSLVAIL 517 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc-CCce-EEEEcChhcCCeeeCCCcEEEEe
Confidence 4688999999877 266778999999999999999999999987 3444 46778999999999999999999
Q ss_pred CCC
Q psy16278 79 DHD 81 (88)
Q Consensus 79 d~~ 81 (88)
|.+
T Consensus 518 Dad 520 (655)
T TIGR00631 518 DAD 520 (655)
T ss_pred Ccc
Confidence 964
No 76
>KOG0354|consensus
Probab=97.93 E-value=2.7e-05 Score=59.88 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=60.2
Q ss_pred ccCCCceEEEEeecc-----------cccCCCeEEEEEC--------CCCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 6 RSEVHRPKTSSKYTT-----------CEMPGVTYLRLDG--------SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 6 ~~~g~k~liFs~~~~-----------l~~~~~~~~~~~G--------~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
..+..|+|||+.++. +...+++..-+-| ++++.+.++.+++|++ +...+ |++|..|-+|
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~-G~~Nv-LVATSV~EEG 487 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD-GEINV-LVATSVAEEG 487 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC-CCccE-EEEecchhcc
Confidence 466789999999972 2333344333333 7889999999999999 55555 6777999999
Q ss_pred cCCcCCCEEEEeCCCCCC
Q psy16278 67 LNLTGADTVIFVDHDWSP 84 (88)
Q Consensus 67 l~L~~a~~vi~~d~~wnP 84 (88)
||...+|-||+||-.=||
T Consensus 488 LDI~ec~lVIcYd~~snp 505 (746)
T KOG0354|consen 488 LDIGECNLVICYDYSSNP 505 (746)
T ss_pred CCcccccEEEEecCCccH
Confidence 999999999999987765
No 77
>KOG0326|consensus
Probab=97.92 E-value=5.1e-06 Score=59.02 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=64.4
Q ss_pred CceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 10 HRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 10 ~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+.|||++.. +....|+++.-++.+|.++.|......|.+ +.|+. |++++...+|++.++.|.||.+|.+
T Consensus 323 NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~-G~crn-LVctDL~TRGIDiqavNvVINFDfp 400 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN-GKCRN-LVCTDLFTRGIDIQAVNVVINFDFP 400 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc-cccce-eeehhhhhcccccceeeEEEecCCC
Confidence 4679999988 245569999999999999999999999999 77777 5556999999999999999999998
Q ss_pred CCCC
Q psy16278 82 WSPM 85 (88)
Q Consensus 82 wnP~ 85 (88)
-|+.
T Consensus 401 k~aE 404 (459)
T KOG0326|consen 401 KNAE 404 (459)
T ss_pred CCHH
Confidence 7764
No 78
>KOG0334|consensus
Probab=97.90 E-value=1.7e-05 Score=62.40 Aligned_cols=72 Identities=21% Similarity=0.205 Sum_probs=63.8
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
+.-++|||++-. +|...|++...++|+.+..+|...+..|++.... +|+.|..+++||+...-..||+||
T Consensus 612 e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~--LLvaTsvvarGLdv~~l~Lvvnyd 689 (997)
T KOG0334|consen 612 EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVN--LLVATSVVARGLDVKELILVVNYD 689 (997)
T ss_pred hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCce--EEEehhhhhcccccccceEEEEcc
Confidence 356899999987 4788899999999999999999999999995533 677889999999999999999999
Q ss_pred CC
Q psy16278 80 HD 81 (88)
Q Consensus 80 ~~ 81 (88)
.+
T Consensus 690 ~p 691 (997)
T KOG0334|consen 690 FP 691 (997)
T ss_pred cc
Confidence 76
No 79
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=97.90 E-value=3.7e-05 Score=59.46 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=60.4
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc--------
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT-------- 70 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~-------- 70 (88)
..|..+|||++.. .|...|+++..++|.+..++|.....+|+.. . ++++|..+|+|+|+.
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~-VlIATdmAgRGtDI~l~~~v~~~ 497 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---A-VTVATSMAGRGTDIKLGKGVAEL 497 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---e-EEEEccccccccCCCCCcccccc
Confidence 4688999999988 3778899999999999988887777766653 2 578899999999999
Q ss_pred -CCCEEEEeCCCC
Q psy16278 71 -GADTVIFVDHDW 82 (88)
Q Consensus 71 -~a~~vi~~d~~w 82 (88)
+.++|+.++++=
T Consensus 498 GGL~vIit~~~ps 510 (762)
T TIGR03714 498 GGLAVIGTERMEN 510 (762)
T ss_pred CCeEEEEecCCCC
Confidence 779999988873
No 80
>KOG0349|consensus
Probab=97.88 E-value=6.2e-05 Score=55.58 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=58.5
Q ss_pred CceEEEEeecc-----------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 10 HRPKTSSKYTT-----------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 10 ~k~liFs~~~~-----------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.|+|||+.-.. .-...++.+-++|...+.+|.+.++.|+. ..++ ||++++++++||+++....+|.+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk-~dvk-flictdvaargldi~g~p~~inv 583 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK-FDVK-FLICTDVAARGLDITGLPFMINV 583 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh-cCeE-EEEEehhhhccccccCCceEEEE
Confidence 58999988761 23346788889999999999999999998 2222 78899999999999999999998
Q ss_pred CCC
Q psy16278 79 DHD 81 (88)
Q Consensus 79 d~~ 81 (88)
.+|
T Consensus 584 tlp 586 (725)
T KOG0349|consen 584 TLP 586 (725)
T ss_pred ecC
Confidence 876
No 81
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.86 E-value=4.1e-05 Score=62.72 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=47.1
Q ss_pred EEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCC
Q psy16278 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 83 (88)
Q Consensus 28 ~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wn 83 (88)
...++|+++.++|..+.+.|++ ...++ |++|.+...|||+...++||.++.|.+
T Consensus 304 a~~HHGsLSkeeR~~IE~~fK~-G~Lrv-LVATssLELGIDIg~VDlVIq~gsP~s 357 (1490)
T PRK09751 304 ARSHHGSVSKEQRAITEQALKS-GELRC-VVATSSLELGIDMGAVDLVIQVATPLS 357 (1490)
T ss_pred eeeccccCCHHHHHHHHHHHHh-CCceE-EEeCcHHHccCCcccCCEEEEeCCCCC
Confidence 4568899999999999999998 44554 778899999999999999999999854
No 82
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00013 Score=55.09 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=64.6
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.-.|||+..+ .|...|++...|+|+++.++|+..=++|.+++.. ++++|.|-|-|+|=.+...||+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~--iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK--VMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc--EEEEeccccCccCCCCceEEEEe
Confidence 3444579999888 3778899999999999999999999999985554 47777999999999999999999
Q ss_pred CCCCC
Q psy16278 79 DHDWS 83 (88)
Q Consensus 79 d~~wn 83 (88)
++|-+
T Consensus 306 ~lP~s 310 (590)
T COG0514 306 DLPGS 310 (590)
T ss_pred cCCCC
Confidence 99854
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.80 E-value=8.4e-05 Score=57.41 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=63.1
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcC-------
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG------- 71 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~------- 71 (88)
..|..+|||++.. .|...|++...++|. ..+|...+..|...+.. ++++|..+|+|+|+..
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~--VtIATnmAgRGtDI~l~~V~~~G 478 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA--VTIATNMAGRGTDIKLEEVKELG 478 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce--EEEEeccccCCcCCCccchhhcC
Confidence 5688999999988 378889999999998 78999999999874443 5778899999999988
Q ss_pred CCEEEEeCCCCCC
Q psy16278 72 ADTVIFVDHDWSP 84 (88)
Q Consensus 72 a~~vi~~d~~wnP 84 (88)
.-|||.++++-++
T Consensus 479 Gl~VI~t~~p~s~ 491 (745)
T TIGR00963 479 GLYVIGTERHESR 491 (745)
T ss_pred CcEEEecCCCCcH
Confidence 5699999998665
No 84
>PRK14701 reverse gyrase; Provisional
Probab=97.80 E-value=6.6e-05 Score=62.11 Aligned_cols=71 Identities=13% Similarity=-0.007 Sum_probs=58.1
Q ss_pred ccCCCceEEEEeec-----------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEec---cccccccCCcC
Q psy16278 6 RSEVHRPKTSSKYT-----------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT---QVGGLGLNLTG 71 (88)
Q Consensus 6 ~~~g~k~liFs~~~-----------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~---~~~~~Gl~L~~ 71 (88)
+..|..+|||++.. .|...|++...++|+ |.+.+++|.+ +.+.|++.+. +.+++|||+..
T Consensus 327 ~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~-G~~~VLVaT~s~~gvaaRGIDiP~ 400 (1638)
T PRK14701 327 KKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE-GEIDYLIGVATYYGTLVRGLDLPE 400 (1638)
T ss_pred HhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc-CCCCEEEEecCCCCeeEecCccCC
Confidence 34467899999864 267789999999984 9999999999 5566766553 68999999998
Q ss_pred -CCEEEEeCCCC
Q psy16278 72 -ADTVIFVDHDW 82 (88)
Q Consensus 72 -a~~vi~~d~~w 82 (88)
..+|||++.|-
T Consensus 401 ~Vryvi~~~~Pk 412 (1638)
T PRK14701 401 RIRFAVFYGVPK 412 (1638)
T ss_pred ccCEEEEeCCCC
Confidence 89999999984
No 85
>KOG0343|consensus
Probab=97.78 E-value=7.6e-05 Score=56.26 Aligned_cols=72 Identities=25% Similarity=0.341 Sum_probs=60.7
Q ss_pred CceEEEEeec----------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 10 HRPKTSSKYT----------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 10 ~k~liFs~~~----------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.|.|||-..- .....|++..-++|++++..|-++..+|...... +|.+|+.+++||++.+.+-||-+|
T Consensus 314 ~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~--vLF~TDv~aRGLDFpaVdwViQ~D 391 (758)
T KOG0343|consen 314 KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAV--VLFCTDVAARGLDFPAVDWVIQVD 391 (758)
T ss_pred cceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcce--EEEeehhhhccCCCcccceEEEec
Confidence 4778886644 2456799999999999999999999999885443 688899999999999999999999
Q ss_pred CCCC
Q psy16278 80 HDWS 83 (88)
Q Consensus 80 ~~wn 83 (88)
.|-+
T Consensus 392 CPed 395 (758)
T KOG0343|consen 392 CPED 395 (758)
T ss_pred Cchh
Confidence 8743
No 86
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.78 E-value=6.7e-05 Score=58.50 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=59.5
Q ss_pred cCCCceEEEEeec--------cccc---CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 7 SEVHRPKTSSKYT--------TCEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~---~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.++..+|||..-. .|.. .++.+..++|+++.++|++++..|.+ +..+ +|++|..+.+||++.+.++|
T Consensus 210 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~-G~rk-VlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 210 QESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA-GRRK-VVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC-CCeE-EEEecchHHhcccccCceEE
Confidence 3457899999765 2332 47889999999999999999998876 3333 58888999999999999999
Q ss_pred EEeCCC
Q psy16278 76 IFVDHD 81 (88)
Q Consensus 76 i~~d~~ 81 (88)
|.++.+
T Consensus 288 ID~Gl~ 293 (812)
T PRK11664 288 VDSGLE 293 (812)
T ss_pred EECCCc
Confidence 997765
No 87
>KOG0339|consensus
Probab=97.78 E-value=6.1e-05 Score=56.33 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=60.1
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
+||||..-. .|...++++..++|++.+.+|.+.+.+|+... +.| |+.++++++||++....+|++||.-
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~-~~V-lvatDvaargldI~~ikTVvnyD~a 546 (731)
T KOG0339|consen 470 KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR-KPV-LVATDVAARGLDIPSIKTVVNYDFA 546 (731)
T ss_pred cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC-Cce-EEEeeHhhcCCCccccceeeccccc
Confidence 899998866 38899999999999999999999999999843 334 6667999999999999999998854
No 88
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.77 E-value=6.6e-05 Score=58.61 Aligned_cols=72 Identities=15% Similarity=0.073 Sum_probs=59.6
Q ss_pred CCCceEEEEeec--------cccc---CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEE
Q psy16278 8 EVHRPKTSSKYT--------TCEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~---~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
.+.++|||..-. .|.. .++....++|++++++|.++++.|... ..+ +|++|..+.+|||+.+.++||
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rk-VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRK-VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeE-EEEecchHhhcccccCceEEE
Confidence 456899999765 2332 478899999999999999999999763 334 478899999999999999999
Q ss_pred EeCCC
Q psy16278 77 FVDHD 81 (88)
Q Consensus 77 ~~d~~ 81 (88)
.++.+
T Consensus 286 D~Gl~ 290 (819)
T TIGR01970 286 DSGLA 290 (819)
T ss_pred EcCcc
Confidence 98875
No 89
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.61 E-value=0.00017 Score=55.30 Aligned_cols=74 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred CCCceEEEEeec--------ccccC--CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 8 EVHRPKTSSKYT--------TCEMP--GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~--~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+.++|||..-. .|... ++....++|+++++ ++.+++|..++..+ +|++|..+++|||+.+.++||-
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~k-ILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPS-IIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCcee-EEeccChhhccccccCeeEEEE
Confidence 456899999877 24443 68999999999964 56777875334444 5888899999999999999999
Q ss_pred eCCCCCC
Q psy16278 78 VDHDWSP 84 (88)
Q Consensus 78 ~d~~wnP 84 (88)
++....|
T Consensus 471 ~G~~k~p 477 (675)
T PHA02653 471 TGRVYVP 477 (675)
T ss_pred CCCccCC
Confidence 9844333
No 90
>KOG0953|consensus
Probab=97.52 E-value=0.00026 Score=53.35 Aligned_cols=73 Identities=27% Similarity=0.279 Sum_probs=58.8
Q ss_pred cCCCceEEEEeec------ccccCCCe-EEEEECCCCHHHHHHHHHhccC-CCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT------TCEMPGVT-YLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~------~l~~~~~~-~~~~~G~~~~~~R~~~v~~F~~-~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.+|.=+|-||.-. +.+..+.. ...|.|+.|++.|.+-...||+ +.++.|++.| +|-|-||||. -.+|||+
T Consensus 356 k~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~-IrRiiF~ 433 (700)
T KOG0953|consen 356 KPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN-IRRIIFY 433 (700)
T ss_pred CCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee-cccccccccc-eeEEEEe
Confidence 4677788888755 45666666 9999999999999999999998 4567775555 9999999995 5789998
Q ss_pred CCC
Q psy16278 79 DHD 81 (88)
Q Consensus 79 d~~ 81 (88)
++.
T Consensus 434 sl~ 436 (700)
T KOG0953|consen 434 SLI 436 (700)
T ss_pred ecc
Confidence 875
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.47 E-value=0.00033 Score=54.60 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc---CCC--
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT---GAD-- 73 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~---~a~-- 73 (88)
..|..+|||++.. .|...++++..++|....+++.-+..+++... ++++|..+|+|+|+. ...
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEeccccCCCCCCCCcchhhh
Confidence 4788999999998 37888999999999988777777777776632 577889999999995 667
Q ss_pred ---EEEEeCCCCCC
Q psy16278 74 ---TVIFVDHDWSP 84 (88)
Q Consensus 74 ---~vi~~d~~wnP 84 (88)
|||..+.+-++
T Consensus 514 GGLhVI~te~pes~ 527 (796)
T PRK12906 514 GGLAVIGTERHESR 527 (796)
T ss_pred CCcEEEeeecCCcH
Confidence 99999988654
No 92
>KOG1123|consensus
Probab=97.33 E-value=0.00049 Score=51.68 Aligned_cols=75 Identities=16% Similarity=0.262 Sum_probs=58.9
Q ss_pred cCCCceEEEEeec-ccccC--CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCC
Q psy16278 7 SEVHRPKTSSKYT-TCEMP--GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 7 ~~g~k~liFs~~~-~l~~~--~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~w 82 (88)
..|.|.||||.-. +|..- ...--.+.|.+++.+|.++++.|+.++.+.-+++| ++|-..++|..||.+|-...+.
T Consensus 541 ~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~ 618 (776)
T KOG1123|consen 541 RRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSIDLPEANVLIQISSHG 618 (776)
T ss_pred hcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEe-eccCccccCCcccEEEEEcccc
Confidence 4688999999877 21111 11113578999999999999999998988877777 9999999999999999876653
No 93
>PRK02362 ski2-like helicase; Provisional
Probab=97.32 E-value=0.00048 Score=53.09 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=41.0
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+..++|++++++|..+.+.|++ +.++| |++|.+.+.|+|+.+.+.||.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~-G~i~V-LvaT~tla~GvnlPa~~VVI~ 353 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRD-RLIKV-ISSTPTLAAGLNLPARRVIIR 353 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHc-CCCeE-EEechhhhhhcCCCceEEEEe
Confidence 46678999999999999999998 55555 777899999999987766665
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.32 E-value=0.00071 Score=51.79 Aligned_cols=57 Identities=19% Similarity=0.438 Sum_probs=49.4
Q ss_pred cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 23 ~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
..+++...++|+|++++++++|.+|++. ++.| |++|.+--+|+|..+|+-+|+.++.
T Consensus 505 ~~~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~I-LVaTTVIEVGVdVPnATvMVIe~AE 561 (677)
T COG1200 505 LPELKVGLVHGRMKPAEKDAVMEAFKEG-EIDI-LVATTVIEVGVDVPNATVMVIENAE 561 (677)
T ss_pred cccceeEEEecCCChHHHHHHHHHHHcC-CCcE-EEEeeEEEecccCCCCeEEEEechh
Confidence 4467788999999999999999999994 4444 7788999999999999999998864
No 95
>PRK01172 ski2-like helicase; Provisional
Probab=97.18 E-value=0.0011 Score=50.61 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=42.1
Q ss_pred EEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 28 ~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
+..++|++++++|..+.+.|++ +.++| |++|.+.+.|+|+.+ .+||+.+.+
T Consensus 288 v~~~hagl~~~eR~~ve~~f~~-g~i~V-LvaT~~la~Gvnipa-~~VII~~~~ 338 (674)
T PRK01172 288 VAFHHAGLSNEQRRFIEEMFRN-RYIKV-IVATPTLAAGVNLPA-RLVIVRDIT 338 (674)
T ss_pred EEEecCCCCHHHHHHHHHHHHc-CCCeE-EEecchhhccCCCcc-eEEEEcCce
Confidence 5567999999999999999997 45555 777799999999875 688887754
No 96
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.08 E-value=0.0019 Score=45.95 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=47.9
Q ss_pred cCCCceEEEEeec--------ccccC--CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEE
Q psy16278 7 SEVHRPKTSSKYT--------TCEMP--GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~--~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
.++.|+|||++-. .|... ++.+..++|.++..+|.+.. ... +|++|+++++|+|+... +||
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~~~-iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------QFD-ILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------cCC-EEEEecHHhcccCCCCc-eEE
Confidence 3678999999877 24443 45788999999999997653 222 68888999999999754 666
Q ss_pred EeCC
Q psy16278 77 FVDH 80 (88)
Q Consensus 77 ~~d~ 80 (88)
++|
T Consensus 341 -~~p 343 (357)
T TIGR03158 341 -FSA 343 (357)
T ss_pred -ECC
Confidence 453
No 97
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.98 E-value=0.0016 Score=51.39 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=54.4
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~ 70 (88)
-..|.-||||+... .|...|+++..+++.....+|..+.++|+.. . ++++|..+|+|+|+.
T Consensus 441 ~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-~---VtIATNmAGRGtDI~ 509 (896)
T PRK13104 441 GVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-A---VTIATNMAGRGTDIV 509 (896)
T ss_pred HhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-c---EEEeccCccCCccee
Confidence 35788999999998 3888999999999999999999999999985 2 588889999999986
No 98
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=96.91 E-value=0.0019 Score=50.66 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=51.9
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcC
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 71 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~ 71 (88)
..|..+|||+... .|...|+++..++|. ..+|...+.+|...+.. ++++|..+|+|+|+.=
T Consensus 428 ~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~--VtIATNmAGRGtDI~L 496 (830)
T PRK12904 428 KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA--VTIATNMAGRGTDIKL 496 (830)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce--EEEecccccCCcCccC
Confidence 5688999999988 378889999999996 78999999999885554 5888899999999863
No 99
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.89 E-value=0.0018 Score=51.14 Aligned_cols=60 Identities=7% Similarity=0.047 Sum_probs=53.6
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~ 70 (88)
+.|..+|||++.. .|...++++..+++..+..+|..+.++|+... ++++|..+|+|+|+.
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIATnmAGRGTDIk 514 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIATNMAGRGTDIV 514 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEecCCcCCCccee
Confidence 5689999999988 37888999999999999999999999999844 578889999999986
No 100
>KOG0346|consensus
Probab=96.75 E-value=0.0014 Score=48.52 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=59.4
Q ss_pred CceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEecc--------------------
Q psy16278 10 HRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ-------------------- 61 (88)
Q Consensus 10 ~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~-------------------- 61 (88)
-|.|||.+-.. |+..|++.+.+.|.+|...|.-++++||. +...+ ++.++
T Consensus 269 gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-G~Ydi-vIAtD~s~~~~~~eee~kgk~~e~~ 346 (569)
T KOG0346|consen 269 GKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-GLYDI-VIATDDSADGDKLEEEVKGKSDEKN 346 (569)
T ss_pred CceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC-cceeE-EEEccCccchhhhhccccccccccC
Confidence 47899999773 78889999999999999999999999997 33333 44444
Q ss_pred ------c---------cccccCCcCCCEEEEeCCCCCC
Q psy16278 62 ------V---------GGLGLNLTGADTVIFVDHDWSP 84 (88)
Q Consensus 62 ------~---------~~~Gl~L~~a~~vi~~d~~wnP 84 (88)
. .++|||++..+.|+.+|.|-++
T Consensus 347 ~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~ 384 (569)
T KOG0346|consen 347 PKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETV 384 (569)
T ss_pred CCCccccccccCchhchhccccchheeeeeecCCCCch
Confidence 1 2589999999999999998654
No 101
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.66 E-value=0.0044 Score=49.49 Aligned_cols=72 Identities=8% Similarity=0.064 Sum_probs=57.6
Q ss_pred cCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCC-----
Q psy16278 7 SEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD----- 73 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~----- 73 (88)
..|..+|||++... |...++++..+++ ...+|...+.+|...+.. ++++|..+|+|+|+.-..
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~--VtIATNMAGRGtDIkl~~~V~~v 671 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA--VTIATNMAGRGTDIKLGEGVREL 671 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe--EEEeccCcCCCCCcCCccchhhh
Confidence 46889999999982 7888999999998 488999999999885544 588889999999998433
Q ss_pred ---EEEEeCCCC
Q psy16278 74 ---TVIFVDHDW 82 (88)
Q Consensus 74 ---~vi~~d~~w 82 (88)
+||..+.+-
T Consensus 672 GGL~VIgterhe 683 (1025)
T PRK12900 672 GGLFILGSERHE 683 (1025)
T ss_pred CCceeeCCCCCc
Confidence 336555553
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.55 E-value=0.013 Score=47.63 Aligned_cols=73 Identities=10% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCceEEEEeecc--------cc---------cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcC
Q psy16278 9 VHRPKTSSKYTT--------CE---------MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 71 (88)
Q Consensus 9 g~k~liFs~~~~--------l~---------~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~ 71 (88)
+.|.|||+.-.. +. ..+.....++|+++ ++.+++++|+++... .++++.+..++|+|...
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p-~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP-NIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC-eEEEEecccccCCCccc
Confidence 469999998762 11 11224567999975 678899999884433 45788899999999999
Q ss_pred CCEEEEeCCCCCC
Q psy16278 72 ADTVIFVDHDWSP 84 (88)
Q Consensus 72 a~~vi~~d~~wnP 84 (88)
..+|+++.|.-++
T Consensus 775 v~~vVf~rpvkS~ 787 (1123)
T PRK11448 775 ICNLVFLRRVRSR 787 (1123)
T ss_pred ccEEEEecCCCCH
Confidence 9999999997543
No 103
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.46 E-value=0.012 Score=46.30 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=59.5
Q ss_pred ceEEEEeec--------ccccCC-CeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 11 RPKTSSKYT--------TCEMPG-VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~-~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+|||++-+ .|...+ ..+..-+|+.+.+.|..+-++|++.. .++ +++|...-.|||.-..+.||.+..|
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-lra-vV~TSSLELGIDiG~vdlVIq~~SP 332 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-LKA-VVATSSLELGIDIGDIDLVIQLGSP 332 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-ceE-EEEccchhhccccCCceEEEEeCCc
Confidence 789999988 244444 88999999999999999999999944 666 6677899999999999999999876
No 104
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.35 E-value=0.0097 Score=44.37 Aligned_cols=57 Identities=26% Similarity=0.438 Sum_probs=47.0
Q ss_pred cCCCeEEEEECCCCHHHH--HHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 23 MPGVTYLRLDGSVVSTAR--HAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 23 ~~~~~~~~~~G~~~~~~R--~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
+.+.++.++|++++..++ .+.++.|.+. +..| |+.|+..+.|+|+.+.+.|++++.+
T Consensus 282 fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD 340 (505)
T TIGR00595 282 FPGARIARIDSDTTSRKGAHEALLNQFANG-KADI-LIGTQMIAKGHHFPNVTLVGVLDAD 340 (505)
T ss_pred CCCCcEEEEecccccCccHHHHHHHHHhcC-CCCE-EEeCcccccCCCCCcccEEEEEcCc
Confidence 447789999999987766 8999999983 3444 6778999999999999999877665
No 105
>PRK09694 helicase Cas3; Provisional
Probab=96.31 E-value=0.017 Score=45.77 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=53.0
Q ss_pred cCCCceEEEEeec--------ccccCC---CeEEEEECCCCHHHH----HHHHHhccCCCCC--cEEEEeccccccccCC
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPG---VTYLRLDGSVVSTAR----HAIVTKFNSDPTI--DVLLLTTQVGGLGLNL 69 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~---~~~~~~~G~~~~~~R----~~~v~~F~~~~~~--~v~lls~~~~~~Gl~L 69 (88)
..|.+++||++.. .|...+ .+...++|+++..+| +++++.|..+... ..+|++|.+...|+|+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 4678999999977 244332 578999999999999 5678899432321 2468899999999999
Q ss_pred cCCCEEEEe
Q psy16278 70 TGADTVIFV 78 (88)
Q Consensus 70 ~~a~~vi~~ 78 (88)
..+.+|..
T Consensus 638 -d~DvlItd 645 (878)
T PRK09694 638 -DFDWLITQ 645 (878)
T ss_pred -CCCeEEEC
Confidence 46777763
No 106
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.23 E-value=0.012 Score=48.26 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred cCCCceEEEEeec--------ccccCCC---eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGV---TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~---~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.+..++|||..-. .|...++ .+..++|++++++|.++.+.+ +..+ ++++|..+.+||++.+.++|
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~---g~rk-IIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH---SGRR-IVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc---CCee-EEEeccHHhhccccCcceEE
Confidence 3456899999876 2444444 467899999999999987652 3333 58888999999999999999
Q ss_pred EEeC
Q psy16278 76 IFVD 79 (88)
Q Consensus 76 i~~d 79 (88)
|.++
T Consensus 360 ID~G 363 (1294)
T PRK11131 360 IDPG 363 (1294)
T ss_pred EECC
Confidence 9975
No 107
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.16 E-value=0.019 Score=44.27 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=46.5
Q ss_pred CCCeEEEEECCCCH--HHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 24 PGVTYLRLDGSVVS--TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 24 ~~~~~~~~~G~~~~--~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+.++.++|+.++. .+++++++.|.+ .+..| |+.|+..+.|+|+.+.+.|+.++.+
T Consensus 451 p~~~v~~~~~d~~~~~~~~~~~l~~f~~-g~~~I-LVgT~~iakG~d~p~v~lV~il~aD 508 (679)
T PRK05580 451 PEARILRIDRDTTRRKGALEQLLAQFAR-GEADI-LIGTQMLAKGHDFPNVTLVGVLDAD 508 (679)
T ss_pred CCCcEEEEeccccccchhHHHHHHHHhc-CCCCE-EEEChhhccCCCCCCcCEEEEEcCc
Confidence 47789999999864 678999999998 34444 6778999999999999999888765
No 108
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=95.96 E-value=0.026 Score=46.39 Aligned_cols=69 Identities=13% Similarity=0.055 Sum_probs=53.6
Q ss_pred CCCceEEEEeecc--------ccc---CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEE
Q psy16278 8 EVHRPKTSSKYTT--------CEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~~---~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
...++|||..-.+ |.. .++.+..++|+++.++|+++++.+ +. +-++++|..+.+||++.+..+||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEE
Confidence 4468999998662 332 345688999999999999985543 22 33588899999999999999999
Q ss_pred EeCC
Q psy16278 77 FVDH 80 (88)
Q Consensus 77 ~~d~ 80 (88)
-++.
T Consensus 354 DsGl 357 (1283)
T TIGR01967 354 DTGT 357 (1283)
T ss_pred eCCC
Confidence 8774
No 109
>PRK00254 ski2-like helicase; Provisional
Probab=95.76 E-value=0.017 Score=44.53 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=41.1
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+..++|++++++|..+.+.|++ +..+| |++|.+.+.|+|+.+.+.||.
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~-G~i~V-LvaT~tLa~Gvnipa~~vVI~ 345 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE-GLIKV-ITATPTLSAGINLPAFRVIIR 345 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC-CCCeE-EEeCcHHhhhcCCCceEEEEC
Confidence 46789999999999999999998 45555 777899999999987766663
No 110
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.00 E-value=0.17 Score=37.51 Aligned_cols=78 Identities=13% Similarity=0.120 Sum_probs=61.0
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccc-cccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG-LGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~-~Gl~L~~a~~vi~ 77 (88)
....++|||..-- .|...++++..++..++.++-.++-..|.. +...++|.+-+.-= .-..+.++.+|||
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~-G~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH-GRKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc-CCceEEEEEhHHhhhhhceecCCcEEEE
Confidence 4456788886533 377889999999999999999999999998 45667666644421 4556789999999
Q ss_pred eCCCCCCC
Q psy16278 78 VDHDWSPM 85 (88)
Q Consensus 78 ~d~~wnP~ 85 (88)
|.||=+|.
T Consensus 377 Y~~P~~p~ 384 (442)
T PF06862_consen 377 YGPPENPQ 384 (442)
T ss_pred ECCCCChh
Confidence 99998884
No 111
>KOG0337|consensus
Probab=94.62 E-value=0.059 Score=39.95 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=59.5
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCC
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~w 82 (88)
+.+||.--. -+...|+...-+.|++.+..|...++.|.... +. +|+.++.|++|++..--+.||.||.|=
T Consensus 263 ~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k-~~-~lvvTdvaaRG~diplldnvinyd~p~ 340 (529)
T KOG0337|consen 263 QTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRK-TS-ILVVTDVAARGLDIPLLDNVINYDFPP 340 (529)
T ss_pred ceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCc-cc-eEEEehhhhccCCCccccccccccCCC
Confidence 577887665 26777888889999999999999999999833 33 466779999999999999999999875
Q ss_pred CC
Q psy16278 83 SP 84 (88)
Q Consensus 83 nP 84 (88)
.|
T Consensus 341 ~~ 342 (529)
T KOG0337|consen 341 DD 342 (529)
T ss_pred CC
Confidence 54
No 112
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.36 E-value=0.16 Score=41.49 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=47.5
Q ss_pred ccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCC
Q psy16278 22 EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~ 80 (88)
.....++...+|.|+..+-.++|..|.+ ....| |++|..--.|||+.+||++|+-.-
T Consensus 826 LVPEarI~vaHGQM~e~eLE~vM~~F~~-g~~dV-Lv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 826 LVPEARIAVAHGQMRERELEEVMLDFYN-GEYDV-LVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred hCCceEEEEeecCCCHHHHHHHHHHHHc-CCCCE-EEEeeeeecCcCCCCCceEEEecc
Confidence 4456788999999999999999999998 44455 666788889999999999998543
No 113
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.23 E-value=0.076 Score=37.05 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=31.8
Q ss_pred HHHHhccCCCCCcEEEEeccccccccCCcCC--------CEEEEeCCCCCC
Q psy16278 42 AIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA--------DTVIFVDHDWSP 84 (88)
Q Consensus 42 ~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a--------~~vi~~d~~wnP 84 (88)
...+.|+++ ...|+++| ++|+.|+.|++- ..-|.++++|+.
T Consensus 52 ~e~~~F~~g-~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsa 100 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSA 100 (278)
T ss_pred HHHHHHhCC-CceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCH
Confidence 567789985 45667776 999999999953 345789999985
No 114
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=94.20 E-value=0.089 Score=40.56 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred CceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 10 HRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 10 ~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
-+.||||+.+ .|..+|++...|+++++-.+|+.+=+.|.... .. .+++|-|.|.|.|+. ||.|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~-l~-~VVTTAAL~AGVDFP-ASQVIF 513 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQE-LA-AVVTTAALAAGVDFP-ASQVIF 513 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCC-cc-eEeehhhhhcCCCCc-hHHHHH
Confidence 4789999988 37888999999999999999999999999833 33 367788888999875 455554
No 115
>KOG0351|consensus
Probab=91.39 E-value=0.39 Score=38.68 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=62.7
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
..++.-.||++..+ .|...+++...|+.++++.+|..+-.+|..+. ++| ++.|-|-|-|||-....-||+
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~V-ivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK-IRV-IVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC-CeE-EEEEeeccCCCCCCceeEEEE
Confidence 34556678999877 37777899999999999999999999999965 555 555689999999999999999
Q ss_pred eCCC
Q psy16278 78 VDHD 81 (88)
Q Consensus 78 ~d~~ 81 (88)
+..|
T Consensus 560 ~~lP 563 (941)
T KOG0351|consen 560 YSLP 563 (941)
T ss_pred CCCc
Confidence 9887
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=90.91 E-value=1.2 Score=34.32 Aligned_cols=73 Identities=19% Similarity=0.238 Sum_probs=62.1
Q ss_pred cCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
+.+.|++|=+--.+ |...|++..-++..+..-+|.++++..+. +...| |+.+....+|||+..++-|.++
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~-G~~Dv-LVGINLLREGLDiPEVsLVAIl 521 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL-GEFDV-LVGINLLREGLDLPEVSLVAIL 521 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc-CCccE-EEeehhhhccCCCcceeEEEEe
Confidence 45688888776663 67789999999999999999999999998 44445 6678999999999999999999
Q ss_pred CCC
Q psy16278 79 DHD 81 (88)
Q Consensus 79 d~~ 81 (88)
|-+
T Consensus 522 DAD 524 (663)
T COG0556 522 DAD 524 (663)
T ss_pred ecC
Confidence 876
No 117
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=90.70 E-value=0.86 Score=36.14 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCCCCCcEEEEeccccccccCCcCC--CEEEEeCCCCC
Q psy16278 38 TARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA--DTVIFVDHDWS 83 (88)
Q Consensus 38 ~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a--~~vi~~d~~wn 83 (88)
..|.+++++|+..+. . +|+.+....+|+|+.+. ..||+.-+|+-
T Consensus 712 ~~r~~ll~~F~~~~~-~-iLlgt~sf~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 712 GSRAKIKKRFNNGEK-A-ILLGTSSFWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred ccHHHHHHHHHhCCC-e-EEEEcceeecccccCCCceEEEEEeCCCCC
Confidence 578999999988433 3 45667999999999875 57778887764
No 118
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.36 E-value=0.83 Score=36.65 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=49.1
Q ss_pred cCCCceEEEEeecc-------cccCC--CeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCC--CEE
Q psy16278 7 SEVHRPKTSSKYTT-------CEMPG--VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA--DTV 75 (88)
Q Consensus 7 ~~g~k~liFs~~~~-------l~~~~--~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a--~~v 75 (88)
.+|.-.|.|+.|.. +.... -.+..+.-+++...|.+++++|+..++ .| |+.+....+|+|+.+. +.|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~-~i-LlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK-AI-LLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC-eE-EEecCcccCccccCCCceEEE
Confidence 45667777888872 21111 112333323333568999999997433 34 5556888899999864 899
Q ss_pred EEeCCCCCC
Q psy16278 76 IFVDHDWSP 84 (88)
Q Consensus 76 i~~d~~wnP 84 (88)
|+.-+|+-|
T Consensus 829 iI~kLPF~~ 837 (928)
T PRK08074 829 VIVRLPFAP 837 (928)
T ss_pred EEecCCCCC
Confidence 999988843
No 119
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.19 E-value=1.8 Score=27.01 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcC--CCEEEEeCCCC
Q psy16278 35 VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG--ADTVIFVDHDW 82 (88)
Q Consensus 35 ~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~--a~~vi~~d~~w 82 (88)
....+..++++.|.......| |+++...++|+|+.. +..||+.-.|+
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~i-L~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAI-LLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEE-EEEccceecceecCCCCeeEEEEEecCC
Confidence 344568999999997543344 555555999999986 57888888776
No 120
>PF12622 NpwBP: mRNA biogenesis factor
Probab=87.92 E-value=0.28 Score=25.42 Aligned_cols=11 Identities=27% Similarity=0.724 Sum_probs=9.4
Q ss_pred EEEeCCCCCCC
Q psy16278 75 VIFVDHDWSPM 85 (88)
Q Consensus 75 vi~~d~~wnP~ 85 (88)
=|+||+.|||.
T Consensus 4 SiyydP~~NP~ 14 (48)
T PF12622_consen 4 SIYYDPELNPL 14 (48)
T ss_pred ceecCCccCCC
Confidence 38999999995
No 121
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=87.74 E-value=1.5 Score=34.08 Aligned_cols=76 Identities=8% Similarity=0.068 Sum_probs=51.8
Q ss_pred ccCCCceEEEEeecccc------cCCCe-EEEEECCCCHHHHHHHHHhccCC---CCCcEEEEeccccccccCC------
Q psy16278 6 RSEVHRPKTSSKYTTCE------MPGVT-YLRLDGSVVSTARHAIVTKFNSD---PTIDVLLLTTQVGGLGLNL------ 69 (88)
Q Consensus 6 ~~~g~k~liFs~~~~l~------~~~~~-~~~~~G~~~~~~R~~~v~~F~~~---~~~~v~lls~~~~~~Gl~L------ 69 (88)
...|.-.+.||.|..+. ...++ ...+.|..+ .|.+++++|+.. .... +|+.+....+|+|+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~-vL~gt~sfweGvDv~~~~~~ 544 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQP-VLIAAGGAWTGIDLTHKPVS 544 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCc-EEEeCCccccccccCCccCC
Confidence 35677788999998311 11222 245566433 668899999975 2233 46777999999999
Q ss_pred ----cCCCEEEEeCCCCCC
Q psy16278 70 ----TGADTVIFVDHDWSP 84 (88)
Q Consensus 70 ----~~a~~vi~~d~~wnP 84 (88)
...+.||+.-+|+-|
T Consensus 545 p~~G~~Ls~ViI~kLPF~~ 563 (636)
T TIGR03117 545 PDKDNLLTDLIITCAPFGL 563 (636)
T ss_pred CCCCCcccEEEEEeCCCCc
Confidence 346999998888765
No 122
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=85.67 E-value=1.1 Score=35.87 Aligned_cols=73 Identities=14% Similarity=0.115 Sum_probs=58.5
Q ss_pred cCCCceEEEEeecc------------cccCC----CeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc
Q psy16278 7 SEVHRPKTSSKYTT------------CEMPG----VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 7 ~~g~k~liFs~~~~------------l~~~~----~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~ 70 (88)
.+|-|.|+|+.+.+ +...+ .....+.|+++..+|.++...|+...-. .++++.+.=.|+++-
T Consensus 304 ~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--~~~st~AlelgidiG 381 (851)
T COG1205 304 RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--GVIATNALELGIDIG 381 (851)
T ss_pred HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc--EEecchhhhhceeeh
Confidence 47889999999883 22223 5688899999999999999999995543 588899999999999
Q ss_pred CCCEEEEeCCC
Q psy16278 71 GADTVIFVDHD 81 (88)
Q Consensus 71 ~a~~vi~~d~~ 81 (88)
..+.||.+.-|
T Consensus 382 ~ldavi~~g~P 392 (851)
T COG1205 382 SLDAVIAYGYP 392 (851)
T ss_pred hhhhHhhcCCC
Confidence 88888776544
No 123
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=85.28 E-value=1.9 Score=27.34 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=30.7
Q ss_pred HHHHHHHHHhccCCCCCcEEEEecc--ccccccCCcC--CCEEEEeCCCCC
Q psy16278 37 STARHAIVTKFNSDPTIDVLLLTTQ--VGGLGLNLTG--ADTVIFVDHDWS 83 (88)
Q Consensus 37 ~~~R~~~v~~F~~~~~~~v~lls~~--~~~~Gl~L~~--a~~vi~~d~~wn 83 (88)
...+.+.++.|+.+++. +|++.. ...+|+|+.. +..||+.-+|+-
T Consensus 45 ~~~~~~~l~~~~~~~~~--il~~v~~g~~~EGiD~~~~~~r~vii~glPfp 93 (167)
T PF13307_consen 45 SKSRDELLEEFKRGEGA--ILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFP 93 (167)
T ss_dssp CCHHHHHHHHHCCSSSE--EEEEETTSCCGSSS--ECESEEEEEEES----
T ss_pred cchHHHHHHHHHhccCe--EEEEEecccEEEeecCCCchhheeeecCCCCC
Confidence 56899999999996554 455555 7889999985 678999998873
No 124
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=83.91 E-value=4.6 Score=32.22 Aligned_cols=73 Identities=8% Similarity=-0.050 Sum_probs=46.7
Q ss_pred ccCCCceEEEEeecccc-------cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc--CCCEEE
Q psy16278 6 RSEVHRPKTSSKYTTCE-------MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--GADTVI 76 (88)
Q Consensus 6 ~~~g~k~liFs~~~~l~-------~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~--~a~~vi 76 (88)
..+|.-.+.|+.|..+. ...++ ....|... .|.+++++|+..++ .| |+.+....+|+|+. .+..||
T Consensus 645 ~~~g~~LVLFtS~~~l~~v~~~l~~~~~~-~l~Qg~~~--~~~~l~~~F~~~~~-~v-LlG~~sFwEGVD~p~~~~~~vi 719 (820)
T PRK07246 645 QLQQPILVLFNSKKHLLAVSDLLDQWQVS-HLAQEKNG--TAYNIKKRFDRGEQ-QI-LLGLGSFWEGVDFVQADRMIEV 719 (820)
T ss_pred hcCCCEEEEECcHHHHHHHHHHHhhcCCc-EEEeCCCc--cHHHHHHHHHcCCC-eE-EEecchhhCCCCCCCCCeEEEE
Confidence 34677777899988432 22233 34555433 35678999987433 34 56668899999996 356667
Q ss_pred EeCCCCC
Q psy16278 77 FVDHDWS 83 (88)
Q Consensus 77 ~~d~~wn 83 (88)
+.-+|+-
T Consensus 720 I~kLPF~ 726 (820)
T PRK07246 720 ITRLPFD 726 (820)
T ss_pred EecCCCC
Confidence 7776653
No 125
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=82.46 E-value=5.9 Score=30.31 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=49.7
Q ss_pred ccCCCceEEEEeecc-------cccCCC-eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCC--CEE
Q psy16278 6 RSEVHRPKTSSKYTT-------CEMPGV-TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA--DTV 75 (88)
Q Consensus 6 ~~~g~k~liFs~~~~-------l~~~~~-~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a--~~v 75 (88)
..+|.-++.|+.|.. +..... -.....|. ..+.+.+++|....+. .+++.+....+|+|+... ..|
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEE
Confidence 445656667777772 222222 23445554 3444999999986654 567778999999999864 889
Q ss_pred EEeCCCCC
Q psy16278 76 IFVDHDWS 83 (88)
Q Consensus 76 i~~d~~wn 83 (88)
|++-.|+-
T Consensus 553 vI~~lPfp 560 (654)
T COG1199 553 VIVGLPFP 560 (654)
T ss_pred EEEecCCC
Confidence 99988873
No 126
>KOG0352|consensus
Probab=81.66 E-value=1.7 Score=32.76 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=56.8
Q ss_pred eEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCC
Q psy16278 12 PKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 83 (88)
Q Consensus 12 ~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wn 83 (88)
-||++.-+ .+..+|++.+.++.+....+|-++-+.|-+.... ++..+-.-|-|.+=.+..-||+-+++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P--vI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP--VIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC--EEEEEeccccccCCcceeEEEecCchhh
Confidence 47888777 3889999999999999999999999999884443 4666688888999888888887666544
No 127
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=81.42 E-value=4.2 Score=25.35 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=33.8
Q ss_pred EEECCCCHHHHHHHHHhccCCCC--CcEEEEeccc--cccccCCcC--CCEEEEeCCCC
Q psy16278 30 RLDGSVVSTARHAIVTKFNSDPT--IDVLLLTTQV--GGLGLNLTG--ADTVIFVDHDW 82 (88)
Q Consensus 30 ~~~G~~~~~~R~~~v~~F~~~~~--~~v~lls~~~--~~~Gl~L~~--a~~vi~~d~~w 82 (88)
.+.+.. ..+..++++.|+.... ..| |+++.. .++|+|+.. +..||+.-.|+
T Consensus 24 ~~e~~~-~~~~~~~l~~f~~~~~~~g~i-L~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 24 FIEGKD-SGETEELLEKYSAACEARGAL-LLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEECCC-CchHHHHHHHHHHhcCCCCEE-EEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 344433 2355899999987433 234 444344 789999986 57888888886
No 128
>COG4889 Predicted helicase [General function prediction only]
Probab=80.32 E-value=3.4 Score=33.97 Aligned_cols=56 Identities=21% Similarity=0.396 Sum_probs=43.4
Q ss_pred CCeEEEEECCCCHHHHHHHHHhccC-CC-CCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 25 GVTYLRLDGSVVSTARHAIVTKFNS-DP-TIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 25 ~~~~~~~~G~~~~~~R~~~v~~F~~-~~-~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+++.-+||.|...+|.+...--+. .+ .|+| |--.++.++|++..+-+.|||++|-
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr 556 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPR 556 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCc
Confidence 4556679999999999665554433 33 3444 7778999999999999999999985
No 129
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=77.09 E-value=3.2 Score=29.18 Aligned_cols=81 Identities=16% Similarity=0.086 Sum_probs=41.5
Q ss_pred ccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHH------------Hhcc--CCCCCcEEEEecccc
Q psy16278 6 RSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIV------------TKFN--SDPTIDVLLLTTQVG 63 (88)
Q Consensus 6 ~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v------------~~F~--~~~~~~v~lls~~~~ 63 (88)
+..+.+++|.++-.+ +.-.+++|.+++|.....+....- .... ....+.++|++++-.
T Consensus 114 ~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l 193 (297)
T PF11496_consen 114 REYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQL 193 (297)
T ss_dssp TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS--
T ss_pred ccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccc
Confidence 555678999999873 556899999999987666555443 1111 123456777775544
Q ss_pred cc----ccCCcCCCEEEEeCCCCCCCC
Q psy16278 64 GL----GLNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 64 ~~----Gl~L~~a~~vi~~d~~wnP~~ 86 (88)
.. .++-...+.||-+|+.++|..
T Consensus 194 ~~~~~~~~~~~~~d~IIsfD~~~d~~~ 220 (297)
T PF11496_consen 194 YNNKPPLLSNYNFDLIISFDPSFDTSL 220 (297)
T ss_dssp -TTTS--TT-S-EEEEEE-SST--TTS
T ss_pred cccCCCccccCCcCEEEEecCCCCCCC
Confidence 33 233445689999999998864
No 130
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=75.34 E-value=13 Score=21.09 Aligned_cols=41 Identities=17% Similarity=0.003 Sum_probs=28.8
Q ss_pred CCCceEEEEeec--------------ccccCCCeEEEEECCCCHHHHHHHHHhcc
Q psy16278 8 EVHRPKTSSKYT--------------TCEMPGVTYLRLDGSVVSTARHAIVTKFN 48 (88)
Q Consensus 8 ~g~k~liFs~~~--------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~ 48 (88)
..++|+||+.-. .|...+++|..++=...++.|+.+.+.-.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g 60 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN 60 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC
Confidence 357999998741 27778999999987666666665555433
No 131
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=74.82 E-value=13 Score=30.08 Aligned_cols=69 Identities=13% Similarity=0.233 Sum_probs=50.3
Q ss_pred CceEEEEeecc-------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEE
Q psy16278 10 HRPKTSSKYTT-------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 10 ~k~liFs~~~~-------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
.|.|||+.-.. -+..+--...|+|+ .++-++.|+.|.....--.+.++.+....|++...+-.++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d--~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD--AEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc--chhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 59999998761 23444456779997 5567788999977333233588889999999999888777
Q ss_pred EeCC
Q psy16278 77 FVDH 80 (88)
Q Consensus 77 ~~d~ 80 (88)
|+-+
T Consensus 505 F~r~ 508 (875)
T COG4096 505 FDRK 508 (875)
T ss_pred ehhh
Confidence 7644
No 132
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.18 E-value=10 Score=29.57 Aligned_cols=47 Identities=15% Similarity=0.218 Sum_probs=34.5
Q ss_pred HHHHHHHHhccCC---CCCcEEEEec--cccccccCCcC--CCEEEEeCCCC-CCC
Q psy16278 38 TARHAIVTKFNSD---PTIDVLLLTT--QVGGLGLNLTG--ADTVIFVDHDW-SPM 85 (88)
Q Consensus 38 ~~R~~~v~~F~~~---~~~~v~lls~--~~~~~Gl~L~~--a~~vi~~d~~w-nP~ 85 (88)
.++.+++++|+.. ....| |++. ...++|+|+.+ +..||++-.|+ +|.
T Consensus 565 ~~~~~~l~~f~~~~~~~~gav-L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~ 619 (705)
T TIGR00604 565 QETSDALERYKQAVSEGRGAV-LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTE 619 (705)
T ss_pred chHHHHHHHHHHHHhcCCceE-EEEecCCcccCccccCCCCCcEEEEEccCCCCCC
Confidence 6889999999752 22234 5544 56789999985 69999999887 553
No 133
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=73.03 E-value=16 Score=21.15 Aligned_cols=42 Identities=17% Similarity=-0.012 Sum_probs=30.4
Q ss_pred CCCceEEEEeec--------------ccccCCCeEEEEECCCCHHHHHHHHHhccC
Q psy16278 8 EVHRPKTSSKYT--------------TCEMPGVTYLRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 8 ~g~k~liFs~~~--------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~ 49 (88)
..++|+||+.-. -|...+++|..++=...++.|+.+......
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~ 65 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW 65 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC
Confidence 458999998631 277789999999877667777776655544
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=72.86 E-value=9.6 Score=30.24 Aligned_cols=58 Identities=21% Similarity=0.358 Sum_probs=47.2
Q ss_pred ccCCCeEEEEECCCCHHH--HHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 22 EMPGVTYLRLDGSVVSTA--RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~~~~--R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+.+.++.++|++++..+ -...++.|.+.... +|+-|...+-|+++.+...|..++.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d--ILiGTQmiaKG~~fp~vtLVgvl~aD 562 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD--ILIGTQMIAKGHDFPNVTLVGVLDAD 562 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCC--eeecchhhhcCCCcccceEEEEEech
Confidence 456888999999988765 45789999985444 57778999999999999999988776
No 135
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=72.13 E-value=13 Score=29.20 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=48.2
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccC--CCCCcEEEEeccccccccCCc
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNS--DPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~--~~~~~v~lls~~~~~~Gl~L~ 70 (88)
.+|.|++|-.+-+ .+...+.+++-++++++...|.+.++.... ..+...++++|++-=.|+|+.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 4567888877766 355555579999999999999999986653 222233688889999999987
No 136
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=71.83 E-value=12 Score=29.31 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=46.4
Q ss_pred cCCCceEEEEeecccc--------cCCCeEEEEECCCCHHHHHHHHHhccCC---CCCcEEEEeccccccccCCcC--CC
Q psy16278 7 SEVHRPKTSSKYTTCE--------MPGVTYLRLDGSVVSTARHAIVTKFNSD---PTIDVLLLTTQVGGLGLNLTG--AD 73 (88)
Q Consensus 7 ~~g~k~liFs~~~~l~--------~~~~~~~~~~G~~~~~~R~~~v~~F~~~---~~~~v~lls~~~~~~Gl~L~~--a~ 73 (88)
.+|.-.|.|+.|..+. ..+.+ ....|. ..|.++++.|++. ....| |+.+....+|+|+.+ .+
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~V-L~g~~sf~EGVD~pGd~l~ 607 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSV-LFGLQSFAEGLDLPGDYLT 607 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeE-EEEeccccccccCCCCceE
Confidence 3455577788887322 11222 344553 3578899888742 22334 555588899999975 68
Q ss_pred EEEEeCCCCC
Q psy16278 74 TVIFVDHDWS 83 (88)
Q Consensus 74 ~vi~~d~~wn 83 (88)
.||+.-+|+-
T Consensus 608 ~vII~kLPF~ 617 (697)
T PRK11747 608 QVIITKIPFA 617 (697)
T ss_pred EEEEEcCCCC
Confidence 9999998874
No 137
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=69.71 E-value=17 Score=26.86 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred cCCCceEEEEeecc----------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEE
Q psy16278 7 SEVHRPKTSSKYTT----------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 7 ~~g~k~liFs~~~~----------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
..|.-++||..-.. .......+..++.. ...|.+-+.+|++.... +|+++...-+|.++.+.+..+
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~--lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKIT--LLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceE--EEEEeehhhcccccccceEEE
Confidence 35667888887661 22233333445554 56899999999985443 688999999999999988777
Q ss_pred Ee
Q psy16278 77 FV 78 (88)
Q Consensus 77 ~~ 78 (88)
+=
T Consensus 379 lg 380 (441)
T COG4098 379 LG 380 (441)
T ss_pred ec
Confidence 63
No 138
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=68.52 E-value=23 Score=27.68 Aligned_cols=70 Identities=17% Similarity=0.136 Sum_probs=47.0
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.|.+++|-+-... +...+++...++|+++..+|.+.+..... +.+.|++.+.......+.+.....|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~v~~~~l~lv 387 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS-GEADIVIGTHALIQDDVEFHNLGLV 387 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC-CCCCEEEchHHHhcccchhcccceE
Confidence 4667777776552 23347899999999999999999998877 3445555543334344556666666
Q ss_pred EEe
Q psy16278 76 IFV 78 (88)
Q Consensus 76 i~~ 78 (88)
|+=
T Consensus 388 VID 390 (681)
T PRK10917 388 IID 390 (681)
T ss_pred EEe
Confidence 653
No 139
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=67.59 E-value=46 Score=25.97 Aligned_cols=72 Identities=7% Similarity=0.040 Sum_probs=49.4
Q ss_pred CCceEEEEeecc--------cc----cC-CCeEEEEECCCCHH---------------------HHHHHHHhccCCCCCc
Q psy16278 9 VHRPKTSSKYTT--------CE----MP-GVTYLRLDGSVVST---------------------ARHAIVTKFNSDPTID 54 (88)
Q Consensus 9 g~k~liFs~~~~--------l~----~~-~~~~~~~~G~~~~~---------------------~R~~~v~~F~~~~~~~ 54 (88)
+.|++||+..+. +. .. +...+.++|+.+.+ ...+++++|+++...+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 578999988762 11 11 23455666654433 2347899998755555
Q ss_pred EEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 55 VLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 55 v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
+ |+..+....|.|....+++++.-|-
T Consensus 594 i-lIVvdmllTGFDaP~l~tLyldKpl 619 (667)
T TIGR00348 594 L-LIVVDMLLTGFDAPILNTLYLDKPL 619 (667)
T ss_pred E-EEEEcccccccCCCccceEEEeccc
Confidence 5 5556999999999999999987664
No 140
>KOG3432|consensus
Probab=66.00 E-value=23 Score=21.66 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=31.9
Q ss_pred cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe
Q psy16278 23 MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT 59 (88)
Q Consensus 23 ~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls 59 (88)
.+.-+|..++..++.++-.++..+|..-+.+.++|+.
T Consensus 33 ~r~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLIn 69 (121)
T KOG3432|consen 33 NREPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILIN 69 (121)
T ss_pred CCCCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEh
Confidence 3567899999999999999999999987777777776
No 141
>KOG0951|consensus
Probab=59.31 E-value=31 Score=29.64 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=42.7
Q ss_pred CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC-CCCC
Q psy16278 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD-WSPM 85 (88)
Q Consensus 25 ~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~-wnP~ 85 (88)
.+.+..-+.+++..+|...=+-|.+ +...| +.|+...+-|+||.+ .+||+=.+. +||.
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~-g~iqv-lvstatlawgvnlpa-htViikgtqvy~pe 665 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD-GHIQV-LVSTATLAWGVNLPA-HTVIIKGTQVYDPE 665 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc-CceeE-EEeehhhhhhcCCCc-ceEEecCccccCcc
Confidence 5567788899999999888888877 55555 778899999999975 555553333 5554
No 142
>KOG0952|consensus
Probab=58.80 E-value=25 Score=29.42 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=41.4
Q ss_pred EEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCCCCC
Q psy16278 29 LRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 29 ~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wnP~~ 86 (88)
..-+-++..++|+-.=+.|+. +.++| |.++...+-|.||.+-..+|--.+.|+++.
T Consensus 400 ~iHhAGm~r~DR~l~E~~F~~-G~i~v-L~cTaTLAwGVNLPA~aViIKGT~~ydssk 455 (1230)
T KOG0952|consen 400 GIHHAGMLRSDRQLVEKEFKE-GHIKV-LCCTATLAWGVNLPAYAVIIKGTQVYDSSK 455 (1230)
T ss_pred hhcccccchhhHHHHHHHHhc-CCceE-EEecceeeeccCCcceEEEecCCccccccc
Confidence 345667888888888888888 55555 667788899999987666665666677653
No 143
>COG1204 Superfamily II helicase [General function prediction only]
Probab=58.44 E-value=16 Score=29.07 Aligned_cols=53 Identities=28% Similarity=0.392 Sum_probs=39.0
Q ss_pred EEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC-CCC
Q psy16278 29 LRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD-WSP 84 (88)
Q Consensus 29 ~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~-wnP 84 (88)
..-+.+++.+.|+-+-+.|+. ..++| |++|.+.+.|.||. |.+||+-+-. |+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~-g~ikV-lv~TpTLA~GVNLP-A~~VIIk~~~~y~~ 371 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRK-GKIKV-LVSTPTLAAGVNLP-ARTVIIKDTRRYDP 371 (766)
T ss_pred cccccCCCHHHHHHHHHHHhc-CCceE-EEechHHhhhcCCc-ceEEEEeeeEEEcC
Confidence 345677889999999999998 66666 66778888999986 5566665543 443
No 144
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=57.41 E-value=35 Score=28.53 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=53.2
Q ss_pred ccCCCceEEEEeec-----------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEE---eccccccccCCc-
Q psy16278 6 RSEVHRPKTSSKYT-----------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL---TTQVGGLGLNLT- 70 (88)
Q Consensus 6 ~~~g~k~liFs~~~-----------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~ll---s~~~~~~Gl~L~- 70 (88)
+.-|.=.|||.+-. .|...|++...+.. ...+.++.|.. +.+.+++. ...+.-+||||.
T Consensus 332 k~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~-GeidvLVGvAsyYG~lVRGlDLP~ 405 (1187)
T COG1110 332 KKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEE-GEVDVLVGVASYYGVLVRGLDLPH 405 (1187)
T ss_pred HHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhcc-CceeEEEEecccccceeecCCchh
Confidence 34456678999874 38888999888875 33789999998 55666554 345566999996
Q ss_pred CCCEEEEeCCC
Q psy16278 71 GADTVIFVDHD 81 (88)
Q Consensus 71 ~a~~vi~~d~~ 81 (88)
...++||+..|
T Consensus 406 rirYaIF~GvP 416 (1187)
T COG1110 406 RIRYAVFYGVP 416 (1187)
T ss_pred heeEEEEecCC
Confidence 67999999987
No 145
>KOG0329|consensus
Probab=53.97 E-value=5.9 Score=28.10 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.4
Q ss_pred EEeccccccccCCcCCCEEEEeCCCCCC
Q psy16278 57 LLTTQVGGLGLNLTGADTVIFVDHDWSP 84 (88)
Q Consensus 57 lls~~~~~~Gl~L~~a~~vi~~d~~wnP 84 (88)
++++..-|+|+++...|-++.||.+-.|
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~ 329 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDS 329 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCc
Confidence 5667889999999999999999998654
No 146
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=52.87 E-value=49 Score=25.54 Aligned_cols=69 Identities=14% Similarity=0.104 Sum_probs=44.3
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.|.++++-+-... +...+++...++|+++..+|.+..+...+ +.+.+++.+.......+.+.....|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~-g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS-GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC-CCCCEEEecHHHHhccccccccceE
Confidence 4556666655441 23347899999999999999998888776 3445555444333344555555655
Q ss_pred EE
Q psy16278 76 IF 77 (88)
Q Consensus 76 i~ 77 (88)
|+
T Consensus 362 VI 363 (630)
T TIGR00643 362 II 363 (630)
T ss_pred EE
Confidence 54
No 147
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=52.31 E-value=33 Score=20.90 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=30.9
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
+|..++++++.++-.+++++|..++++-|++++-..+.
T Consensus 35 nf~~v~~~t~~eei~~~~~~~l~~~digIIlIte~~a~ 72 (115)
T TIGR01101 35 NFLVVDKNTTVSEIEDCFNRFLKRDDIAIILINQHIAE 72 (115)
T ss_pred ceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEcHHHHH
Confidence 36678999999999999999888888888888755543
No 148
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=51.83 E-value=35 Score=17.92 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=32.4
Q ss_pred ceEEEEeec---------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEE
Q psy16278 11 RPKTSSKYT---------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 58 (88)
Q Consensus 11 k~liFs~~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~ll 58 (88)
|+.+|+.-. .|...+++|..++-...++.+++..+.......+-++++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 466777654 277789999999988887777777766654323334444
No 149
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=51.45 E-value=33 Score=22.50 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=51.4
Q ss_pred CccCCCceEEEEeecc------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe-ccccccccCCcCCCEEEE
Q psy16278 5 SRSEVHRPKTSSKYTT------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT-TQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 5 ~~~~g~k~liFs~~~~------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls-~~~~~~Gl~L~~a~~vi~ 77 (88)
+++.|-|++|+|+-.+ ....+++|.--.+.=....-.+++..++-+++..+++.. +-+-=.|-|..+. +.|+
T Consensus 58 ~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~-~tIl 136 (175)
T COG2179 58 LKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGM-RTIL 136 (175)
T ss_pred HHhcCCEEEEEeCCCHHHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCc-EEEE
Confidence 4678899999999772 566688888888888888889999999987765554432 1111123333333 4566
Q ss_pred eCCC
Q psy16278 78 VDHD 81 (88)
Q Consensus 78 ~d~~ 81 (88)
++|-
T Consensus 137 V~Pl 140 (175)
T COG2179 137 VEPL 140 (175)
T ss_pred EEEe
Confidence 6554
No 150
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=47.71 E-value=70 Score=20.17 Aligned_cols=38 Identities=18% Similarity=0.017 Sum_probs=29.8
Q ss_pred ceEEEEeec---------------ccccCCCeEEEEECCCCHHHHHHHHHhcc
Q psy16278 11 RPKTSSKYT---------------TCEMPGVTYLRLDGSVVSTARHAIVTKFN 48 (88)
Q Consensus 11 k~liFs~~~---------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~ 48 (88)
||+||+... -|...+++|..+|=++.++.++++.+...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 577888762 27788999999999999888888766554
No 151
>KOG0352|consensus
Probab=45.47 E-value=12 Score=28.40 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=43.7
Q ss_pred ceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccC-CCCCcEEEEeccccc
Q psy16278 11 RPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGG 64 (88)
Q Consensus 11 k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~-~~~~~v~lls~~~~~ 64 (88)
-.||||-.. .|....++...+...++..+|.+++..... .+..+++-++...++
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AA 125 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAA 125 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhh
Confidence 567777655 477778999999999999999999999986 677888777766554
No 152
>PRK10824 glutaredoxin-4; Provisional
Probab=43.81 E-value=65 Score=19.46 Aligned_cols=56 Identities=18% Similarity=0.095 Sum_probs=32.4
Q ss_pred CCCceEEEEeec--------------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCC-CcEEEEeccccc
Q psy16278 8 EVHRPKTSSKYT--------------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGG 64 (88)
Q Consensus 8 ~g~k~liFs~~~--------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~-~~v~lls~~~~~ 64 (88)
..++|+||+.-. -|...++.|..++=....+.|. .+..+..-+. ..||+-....||
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~~IGG 83 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGELVGG 83 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCEEEcC
Confidence 358999999842 1556677777666555555444 4555543333 345554544454
No 153
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=42.95 E-value=23 Score=22.07 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=27.4
Q ss_pred CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 24 PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 24 ~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
.|+++..-.|....-.=.+.++.|.+||.++++++.....+-|
T Consensus 26 ~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~ 68 (138)
T PF13607_consen 26 IGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDG 68 (138)
T ss_dssp -EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-H
T ss_pred CCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCH
Confidence 4666777788877778889999999999999988887765543
No 154
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=41.90 E-value=67 Score=26.17 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=42.0
Q ss_pred CCCeEEEEECCCCHHHHHHHHHhccCCCCC-cEEEEeccccccccCCcCCCEEEE
Q psy16278 24 PGVTYLRLDGSVVSTARHAIVTKFNSDPTI-DVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 24 ~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~-~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
....++.+.|.++.++..+ -|+..+.. +-++++|..+=.+|++.+..+||=
T Consensus 286 ~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~VID 337 (845)
T COG1643 286 DDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYVID 337 (845)
T ss_pred CCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEEec
Confidence 4578899999999999887 67775554 546889999999999999888873
No 155
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=39.68 E-value=60 Score=17.13 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=27.2
Q ss_pred ceEEEEeec---------ccccCCCeEEEEECCCCHHHHHHHHHhcc
Q psy16278 11 RPKTSSKYT---------TCEMPGVTYLRLDGSVVSTARHAIVTKFN 48 (88)
Q Consensus 11 k~liFs~~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~ 48 (88)
|+.+|+.-. .|...+++|..++=...+..+.+..+.-.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g 48 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG 48 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC
Confidence 567777765 27888999999988877766666555433
No 156
>KOG2340|consensus
Probab=39.28 E-value=24 Score=27.53 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=47.5
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEecccc-ccccCCcCCCEEEEeCCCCCCC
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVG-GLGLNLTGADTVIFVDHDWSPM 85 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~-~~Gl~L~~a~~vi~~d~~wnP~ 85 (88)
+....+.|+.+....+.++-.++-+-|.. +...++|.+-++- =+-..+.+...||||.||=||.
T Consensus 572 ~K~e~i~F~~i~EYssk~~vsRAR~lF~q-gr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~ 636 (698)
T KOG2340|consen 572 MKKEEISFVMINEYSSKSKVSRARELFFQ-GRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPH 636 (698)
T ss_pred hhhhhcchHHHhhhhhHhhhhHHHHHHHh-cCceEEEEehhhhhhhhheecceeeEEEecCCCCcH
Confidence 45556888888888777777777777777 5556766665542 2556788999999999999984
No 157
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=38.55 E-value=1.4e+02 Score=24.66 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=47.4
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.|.+++|-+-... +...+++...++|..+..++.+.+..... +.+.+++.+.......+.+..-..+
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~-g~~dIVIGTp~ll~~~v~f~~L~ll 577 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS-GKIDILIGTHKLLQKDVKFKDLGLL 577 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc-CCceEEEchHHHhhCCCCcccCCEE
Confidence 4567777776662 23336778889999999999999988876 3455655554444445666666666
Q ss_pred EEeC
Q psy16278 76 IFVD 79 (88)
Q Consensus 76 i~~d 79 (88)
|+=|
T Consensus 578 VIDE 581 (926)
T TIGR00580 578 IIDE 581 (926)
T ss_pred Eeec
Confidence 6533
No 158
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=38.42 E-value=57 Score=16.48 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=28.1
Q ss_pred eEEEEeec---------ccccCCCeEEEEECCCCHHHHHHHHHhccC
Q psy16278 12 PKTSSKYT---------TCEMPGVTYLRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 12 ~liFs~~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~ 49 (88)
+++|+.-. .|...+++|..++=...++.|+.+.+....
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~ 47 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV 47 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC
Confidence 45666655 278889999999998888777777766533
No 159
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=37.37 E-value=84 Score=18.10 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=31.0
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhccC----CCCCcEEEEeccccc
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNS----DPTIDVLLLTTQVGG 64 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~~----~~~~~v~lls~~~~~ 64 (88)
|...+++|..+|=.+.++.|+.....-.. ..-..||+-..-.||
T Consensus 26 L~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg 73 (92)
T cd03030 26 LEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGD 73 (92)
T ss_pred HHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeC
Confidence 77889999999999999999988877642 112335554444444
No 160
>KOG0525|consensus
Probab=36.38 E-value=23 Score=24.96 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=28.0
Q ss_pred hccCCCCCcEEEEeccccccccCCc---CCCEEEEeCCCC
Q psy16278 46 KFNSDPTIDVLLLTTQVGGLGLNLT---GADTVIFVDHDW 82 (88)
Q Consensus 46 ~F~~~~~~~v~lls~~~~~~Gl~L~---~a~~vi~~d~~w 82 (88)
-|..-|++++.+--...-+-||=|. ..|.|||++|-|
T Consensus 173 ff~h~pgikvviprsp~qakglllscirdpnp~iffepk~ 212 (362)
T KOG0525|consen 173 FFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPCIFFEPKI 212 (362)
T ss_pred heecCCCceEEecCCcchhhceeeeeccCCCceEEechHH
Confidence 3556778888776666677787775 479999999987
No 161
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=36.27 E-value=37 Score=17.22 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=13.9
Q ss_pred ECCCCHHHHHHHHHhccC
Q psy16278 32 DGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 32 ~G~~~~~~R~~~v~~F~~ 49 (88)
..++++++|+.+.++|-.
T Consensus 21 n~~V~~~qR~~iAe~Fa~ 38 (44)
T PF07208_consen 21 NTSVPPAQRQAIAEKFAQ 38 (44)
T ss_dssp HHCS-HHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHH
Confidence 356789999999999953
No 162
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=36.01 E-value=1.4e+02 Score=24.71 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.3
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCC-----
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD----- 73 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~----- 73 (88)
+.|.-|||.+... .|...|+++..++.... +|...+=. +. +..--+.++|..+|+|.|+.-..
T Consensus 424 ~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~A-G~~GaVTIATNMAGRGTDI~Lg~~V~~~ 499 (925)
T PRK12903 424 KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KA-GQKGAITIATNMAGRGTDIKLSKEVLEL 499 (925)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hC-CCCCeEEEecccccCCcCccCchhHHHc
Confidence 4677889999887 27778999988888633 44433332 22 22222577789999999987443
Q ss_pred ---EEEEeCCC
Q psy16278 74 ---TVIFVDHD 81 (88)
Q Consensus 74 ---~vi~~d~~ 81 (88)
|||.-+.+
T Consensus 500 GGLhVIgTerh 510 (925)
T PRK12903 500 GGLYVLGTDKA 510 (925)
T ss_pred CCcEEEecccC
Confidence 77766654
No 163
>PHA02977 hypothetical protein; Provisional
Probab=35.46 E-value=18 Score=23.35 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=8.6
Q ss_pred EEeCCCCCCCC
Q psy16278 76 IFVDHDWSPMK 86 (88)
Q Consensus 76 i~~d~~wnP~~ 86 (88)
|+.|++|+|.+
T Consensus 157 i~~d~~w~phi 167 (201)
T PHA02977 157 ILSDNPWCPHI 167 (201)
T ss_pred cccCCCCCCce
Confidence 56789999964
No 164
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=34.08 E-value=91 Score=22.30 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=32.0
Q ss_pred EEEEECCCCHHHHHHHHHhccCCCCCcEEEEecc---ccccccCCcCCCEEEEe
Q psy16278 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ---VGGLGLNLTGADTVIFV 78 (88)
Q Consensus 28 ~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~---~~~~Gl~L~~a~~vi~~ 78 (88)
+..+-.+.+.-+|+...+.+......+|+|++-. |.|.|+++..+.-...+
T Consensus 97 vi~vP~~~T~verrA~~~a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miV 150 (326)
T PF06723_consen 97 VICVPSGITEVERRALIDAARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIV 150 (326)
T ss_dssp EEEE-SS--HHHHHHHHHHHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEE
Confidence 4557788899999999999998777788888654 34567887765444443
No 165
>PRK10689 transcription-repair coupling factor; Provisional
Probab=33.55 E-value=2.1e+02 Score=24.26 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=45.8
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.|.+++|-+-.+. +...+++...+.|..+..++.+.+...+. ..+.|++.+.......+.+.....+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~-g~~dIVVgTp~lL~~~v~~~~L~lL 726 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE-GKIDILIGTHKLLQSDVKWKDLGLL 726 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh-CCCCEEEECHHHHhCCCCHhhCCEE
Confidence 4677887776552 22235677789999999999999888775 3456666665544445556666666
Q ss_pred EE
Q psy16278 76 IF 77 (88)
Q Consensus 76 i~ 77 (88)
|+
T Consensus 727 VI 728 (1147)
T PRK10689 727 IV 728 (1147)
T ss_pred EE
Confidence 65
No 166
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=32.87 E-value=22 Score=22.95 Aligned_cols=11 Identities=27% Similarity=0.818 Sum_probs=6.2
Q ss_pred EEEEeCCCCCC
Q psy16278 74 TVIFVDHDWSP 84 (88)
Q Consensus 74 ~vi~~d~~wnP 84 (88)
-+||++|||-.
T Consensus 71 D~vFlSPPWGG 81 (163)
T PF09445_consen 71 DVVFLSPPWGG 81 (163)
T ss_dssp SEEEE---BSS
T ss_pred cEEEECCCCCC
Confidence 47899999964
No 167
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=32.55 E-value=27 Score=12.67 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=4.7
Q ss_pred CCCCCCC
Q psy16278 80 HDWSPMK 86 (88)
Q Consensus 80 ~~wnP~~ 86 (88)
|.|.|.+
T Consensus 3 pfw~ppi 9 (12)
T PF08248_consen 3 PFWPPPI 9 (12)
T ss_pred ccCCCCc
Confidence 5677765
No 168
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=32.25 E-value=1.3e+02 Score=18.62 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=33.0
Q ss_pred CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEecc-----ccccccCCcCCCEEEEeCCC
Q psy16278 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ-----VGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 25 ~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~-----~~~~Gl~L~~a~~vi~~d~~ 81 (88)
......++-+-+...=.++++.|..+..++++..... +...|+.....+.++++|.+
T Consensus 29 ~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~D 90 (201)
T cd04195 29 PDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTD 90 (201)
T ss_pred CcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4555655433333444566777766444444333222 22366777778999999987
No 169
>KOG0353|consensus
Probab=32.12 E-value=58 Score=24.57 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=56.1
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.|.-.||++-.. .|...|+...-++..+.+.+|..+-+.|-. ..+.| ++.+-+-|-|++-....-||+-.
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a-~eiqv-ivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIA-GEIQV-IVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccc-cceEE-EEEEeeecccCCCCCeeEEEecc
Confidence 455566655444 488889999999999999999988888877 44555 55568899999999999998866
Q ss_pred CC
Q psy16278 80 HD 81 (88)
Q Consensus 80 ~~ 81 (88)
++
T Consensus 394 l~ 395 (695)
T KOG0353|consen 394 LP 395 (695)
T ss_pred cc
Confidence 54
No 170
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.71 E-value=55 Score=21.19 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEEeccccccccCCc-CCCEEEE-eCCCCCC
Q psy16278 55 VLLLTTQVGGLGLNLT-GADTVIF-VDHDWSP 84 (88)
Q Consensus 55 v~lls~~~~~~Gl~L~-~a~~vi~-~d~~wnP 84 (88)
++|+.+++ |.|+-|- ++-++-+ -.|.|||
T Consensus 129 ivl~PIR~-GvG~RLG~nvGYl~fT~~~twnP 159 (160)
T PF06577_consen 129 IVLAPIRT-GVGARLGANVGYLKFTRKPTWNP 159 (160)
T ss_pred EEEEEeec-CcceeeeeeeeeEeecCCCCcCC
Confidence 56777777 6676663 4445444 4566998
No 171
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=31.33 E-value=74 Score=21.05 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=20.9
Q ss_pred HHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCC
Q psy16278 44 VTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 83 (88)
Q Consensus 44 v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wn 83 (88)
++..+....+.++......+-.-+.-...-.+||+|||++
T Consensus 86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCc
Confidence 3444434555555544332111122222368999999987
No 172
>PF09010 AsiA: Anti-Sigma Factor A; InterPro: IPR015100 Anti-sigma factor A is a transcriptional inhibitor that inhibits sigma 70-directed transcription by weakening its interaction with the core of the host's RNA polymerase. It is an all-helical protein, composed of six helical segments and intervening loops and turns, as well as a helix-turn-helix DNA binding motif, although neither free anti-sigma factor nor anti-sigma factor bound to sigma-70 has been shown to interact directly with DNA. In solution, the protein forms a symmetric dimer of small (10.59 kDa) protomers, which are composed of helix and coil regions and are devoid of beta-strand/sheet secondary structural elements []. ; PDB: 1TKV_A 1JR5_B 1TLH_A 1TL6_A.
Probab=30.15 E-value=35 Score=20.00 Aligned_cols=21 Identities=10% Similarity=0.308 Sum_probs=16.5
Q ss_pred EEEECCCCHHHHHHHHHhccC
Q psy16278 29 LRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 29 ~~~~G~~~~~~R~~~v~~F~~ 49 (88)
..+.++.++++|.++++.|+.
T Consensus 56 r~m~~~lt~~ek~elieeFn~ 76 (91)
T PF09010_consen 56 RQMFKRLTQEEKEELIEEFNE 76 (91)
T ss_dssp HHHHHTS-HHHHHHHHHHSHH
T ss_pred HHHHHHcCHHHHHHHHHHHhh
Confidence 345678899999999999984
No 173
>KOG0949|consensus
Probab=29.98 E-value=1e+02 Score=26.17 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.0
Q ss_pred EECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC-CCCC
Q psy16278 31 LDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD-WSPM 85 (88)
Q Consensus 31 ~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~-wnP~ 85 (88)
-+.++....|+-.=-=|+. +...| |.+|...+.|+||.|-..|+..|.- .||.
T Consensus 968 HHaglNr~yR~~VEvLFR~-g~L~V-lfaT~TLsLGiNMPCrTVvF~gDsLQL~pl 1021 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQ-GHLQV-LFATETLSLGINMPCRTVVFAGDSLQLDPL 1021 (1330)
T ss_pred cccccchHHHHHHHHHhhc-CceEE-EEEeeehhcccCCCceeEEEeccccccCch
Confidence 4566667777666556665 44444 7778999999999887777766654 4664
No 174
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=29.67 E-value=1.1e+02 Score=24.69 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=41.7
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~ 70 (88)
+.|.-|||.+... .|...|+++..+...-...+ .+++.+=-.... +-++|..+|+|.|+.
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa~AG~~ga---VTIATNMAGRGTDIk 492 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIAEAGKYGA---VTVSTQMAGRGTDIR 492 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHHhcCCCCc---EEEEecCCCCccCee
Confidence 4678899999887 37788999999887744322 344443333222 577889999998886
No 175
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=28.99 E-value=1.1e+02 Score=19.37 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=16.6
Q ss_pred HHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCC
Q psy16278 43 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80 (88)
Q Consensus 43 ~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~ 80 (88)
.++.|...+..-+..+.-.+.|-|..|..+...+++.|
T Consensus 63 ~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~ 100 (177)
T cd07014 63 ELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANP 100 (177)
T ss_pred HHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECC
Confidence 44455443333223333345555555554433344433
No 176
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=27.93 E-value=1.7e+02 Score=18.69 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=29.3
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
....++|-++.+-|..+.+.++.-|+.++.+. ..+++
T Consensus 51 DiLlVTG~vT~~~~e~lkk~Yea~PePKiViA-~GaCa 87 (148)
T COG3260 51 DILLVTGAVTRQMREPLKKAYEAMPEPKIVIA-VGACA 87 (148)
T ss_pred cEEEEeccccHHHHHHHHHHHHhCCCCcEEEE-Ecccc
Confidence 45679999999999999999999888887443 34443
No 177
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=27.33 E-value=1.2e+02 Score=19.68 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=33.8
Q ss_pred CeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe-------ccccccccCCcCCCEEEEeCCC
Q psy16278 26 VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT-------TQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 26 ~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls-------~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
+.+..++.+-+. .-.+.++++.......+.+.. ..+...|+.....+.|+++|.+
T Consensus 33 ~eiivVdd~s~d-~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~DaD 94 (241)
T cd06427 33 LDVKLLLEEDDE-ETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFARGEYVVIYDAE 94 (241)
T ss_pred EEEEEEECCCCc-hHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhcCCCEEEEEcCC
Confidence 456666554333 344567777543344454443 1344577888888999999987
No 178
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=27.30 E-value=44 Score=17.43 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.8
Q ss_pred CEEEEeCCCCCCC
Q psy16278 73 DTVIFVDHDWSPM 85 (88)
Q Consensus 73 ~~vi~~d~~wnP~ 85 (88)
..|.+|||.+++.
T Consensus 35 ~~v~~yDPvft~~ 47 (56)
T PF07985_consen 35 DQVSIYDPVFTEV 47 (56)
T ss_pred CcEEEECCCCCHH
Confidence 6788999998864
No 179
>PRK10638 glutaredoxin 3; Provisional
Probab=27.19 E-value=1.1e+02 Score=16.53 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=25.6
Q ss_pred ceEEEEeec---------ccccCCCeEEEEECCCCHHHHHHHHHh
Q psy16278 11 RPKTSSKYT---------TCEMPGVTYLRLDGSVVSTARHAIVTK 46 (88)
Q Consensus 11 k~liFs~~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~ 46 (88)
++.+|+... .|...+++|..++=....+.+....+.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~ 47 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKR 47 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHH
Confidence 677888665 377889999988877666666555443
No 180
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=27.03 E-value=1.6e+02 Score=18.05 Aligned_cols=41 Identities=7% Similarity=0.169 Sum_probs=30.1
Q ss_pred CccCCCceEEEEeecc----------cccCCCeEEEEECCCCHHHHHHHHH
Q psy16278 5 SRSEVHRPKTSSKYTT----------CEMPGVTYLRLDGSVVSTARHAIVT 45 (88)
Q Consensus 5 ~~~~g~k~liFs~~~~----------l~~~~~~~~~~~G~~~~~~R~~~v~ 45 (88)
.+++|.++-|+..-.. ....+..++.+.|.+++++=.+++.
T Consensus 104 ~~~~~~~v~i~~k~~~~~i~elvi~~~~~~e~~~v~i~G~i~~~~I~~l~~ 154 (155)
T PF14060_consen 104 VKDDGEKVRIYVKEKGDKIKELVILVSDKDEFVVVRIKGDIDPEDISKLIK 154 (155)
T ss_pred ccCCCCceEEEEecCCcccceEEEEEeCCCcEEEEEEeCCCCHHHHHHHHc
Confidence 3456677777776552 3456888999999999998877764
No 181
>PF07545 Vg_Tdu: Vestigial/Tondu family; InterPro: IPR011520 The mammalian TEF and the Drosophila scalloped genes belong to a conserved family of transcriptional factors that possesses a TEA/ATTS DNA-binding domain. Transcriptional activation by these proteins likely requires interactions with specific coactivators. In Drosophila, Scalloped (Sd) interacts with Vestigial (Vg) to form a complex, which binds DNA through the Sd TEA/ATTS domain. The Sd-Vg heterodimer is a key regulator of wing development, which directly controls several target genes and is able to induce wing outgrowth when ectopically expressed. This short conserved region is needed for interaction with Sd [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 4EAZ_C.
Probab=26.29 E-value=43 Score=15.89 Aligned_cols=11 Identities=9% Similarity=0.014 Sum_probs=7.7
Q ss_pred CCceEEEEeec
Q psy16278 9 VHRPKTSSKYT 19 (88)
Q Consensus 9 g~k~liFs~~~ 19 (88)
+.+++||+.|.
T Consensus 4 ss~cVvfTy~~ 14 (33)
T PF07545_consen 4 SSRCVVFTYFQ 14 (33)
T ss_dssp ETTEEEEE-SS
T ss_pred cccEEEEEEEc
Confidence 35788999887
No 182
>PRK05580 primosome assembly protein PriA; Validated
Probab=25.99 E-value=3.3e+02 Score=21.46 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=44.5
Q ss_pred CCCceEEEEeecc--------c-ccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 8 EVHRPKTSSKYTT--------C-EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l-~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.|.++||-+-..+ + ...+.+...++|+++..+|.+...+.... ...|++.+ ..+ .-+.+.+...||+=
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVgT-rsa-l~~p~~~l~liVvD 265 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIGA-RSA-LFLPFKNLGLIIVD 265 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEec-cHH-hcccccCCCEEEEE
Confidence 3667777776653 2 22367889999999999998888777663 34554443 422 22445566666665
Q ss_pred C
Q psy16278 79 D 79 (88)
Q Consensus 79 d 79 (88)
|
T Consensus 266 E 266 (679)
T PRK05580 266 E 266 (679)
T ss_pred C
Confidence 5
No 183
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=24.94 E-value=38 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=16.6
Q ss_pred CCCceEEEEeec----------ccccCCCeEEEEE
Q psy16278 8 EVHRPKTSSKYT----------TCEMPGVTYLRLD 32 (88)
Q Consensus 8 ~g~k~liFs~~~----------~l~~~~~~~~~~~ 32 (88)
+-.||++||.|. +|...+++++.+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 446999999998 3677788888887
No 184
>PRK10018 putative glycosyl transferase; Provisional
Probab=24.90 E-value=2.4e+02 Score=19.42 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=35.2
Q ss_pred ccCCCeEEEEECCCCH-HHHHHHHHhccCCCCCcEEEEecccc-----ccccCCcCCCEEEEeCCC--CCCC
Q psy16278 22 EMPGVTYLRLDGSVVS-TARHAIVTKFNSDPTIDVLLLTTQVG-----GLGLNLTGADTVIFVDHD--WSPM 85 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~~-~~R~~~v~~F~~~~~~~v~lls~~~~-----~~Gl~L~~a~~vi~~d~~--wnP~ 85 (88)
....+....+|.+-+. +.-.+.+..+. ++.++++-.....| ..|+......+|.++|.+ |.|.
T Consensus 31 t~~~~EiIVVDDgS~~~~~~~~~~~~~~-~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~lDaDD~~~p~ 101 (279)
T PRK10018 31 DYSNWEMIIVDDCSTSWEQLQQYVTALN-DPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPN 101 (279)
T ss_pred CCCCeEEEEEECCCCCHHHHHHHHHHcC-CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCCcc
Confidence 4456777788766542 22223333332 23333322221222 367888889999999987 7664
No 185
>PRK13556 azoreductase; Provisional
Probab=24.47 E-value=45 Score=21.74 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=14.7
Q ss_pred CcCCCEEEEeCCCCCCCC
Q psy16278 69 LTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 69 L~~a~~vi~~d~~wnP~~ 86 (88)
+..|+.||+.-|-||-++
T Consensus 87 l~~AD~iVi~~P~yn~~~ 104 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTI 104 (208)
T ss_pred HHHCCEEEEeccccccCC
Confidence 467899999999998653
No 186
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=23.96 E-value=2e+02 Score=18.21 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccc
Q psy16278 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQV 62 (88)
Q Consensus 25 ~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~ 62 (88)
......++|.++.+....+.+-++.-++.+. +++..+
T Consensus 57 ~aDvllVtG~vt~~~~~~l~~~~e~~p~pk~-VIA~Gs 93 (145)
T TIGR01957 57 QADVMIVAGTVTKKMAPALRRLYDQMPEPKW-VISMGA 93 (145)
T ss_pred cceEEEEecCCcHHHHHHHHHHHHhccCCce-EEEecc
Confidence 3668899999999999888888887666665 333343
No 187
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=23.54 E-value=1.5e+02 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=10.6
Q ss_pred HHHHHHHHHhccCCCCCcEEEEe
Q psy16278 37 STARHAIVTKFNSDPTIDVLLLT 59 (88)
Q Consensus 37 ~~~R~~~v~~F~~~~~~~v~lls 59 (88)
-.+=.+.++....++.++.+++.
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~ 45 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLR 45 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEE
Confidence 34444444444444444444443
No 188
>PTZ00062 glutaredoxin; Provisional
Probab=23.51 E-value=2.3e+02 Score=18.81 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=30.7
Q ss_pred CCCceEEEEeec--------------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCC
Q psy16278 8 EVHRPKTSSKYT--------------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT 52 (88)
Q Consensus 8 ~g~k~liFs~~~--------------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~ 52 (88)
..++|+||+.-. -|...+++|..+|-....+.|+.+. .+...+.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~-~~sg~~T 168 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELK-VYSNWPT 168 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHH-HHhCCCC
Confidence 457999999832 2677799999999887776666544 4544344
No 189
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=23.47 E-value=19 Score=16.65 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=14.0
Q ss_pred EECCCCHHHHHHHHHhccCCC
Q psy16278 31 LDGSVVSTARHAIVTKFNSDP 51 (88)
Q Consensus 31 ~~G~~~~~~R~~~v~~F~~~~ 51 (88)
++|.++..++..+-.+....+
T Consensus 12 ~dg~L~~~~~~~~~~HL~~C~ 32 (36)
T PF13490_consen 12 LDGELSPEERARLEAHLASCP 32 (36)
T ss_dssp HCT-S-HHHHHHHHHHHCT-H
T ss_pred HcCCCCHHHHHHHHHHHHcCH
Confidence 578889999988887776544
No 190
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=22.82 E-value=62 Score=20.59 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.3
Q ss_pred HHHHHHHHHhccCCCCCcEEEEecccc
Q psy16278 37 STARHAIVTKFNSDPTIDVLLLTTQVG 63 (88)
Q Consensus 37 ~~~R~~~v~~F~~~~~~~v~lls~~~~ 63 (88)
++.|.+.+..+..||++.++|+..-.|
T Consensus 58 ~~~~~~~l~~~~~Dp~v~vIlvd~~~G 84 (153)
T PF00549_consen 58 PSTRNEALEIEAADPEVKVILVDIVGG 84 (153)
T ss_dssp SSHHHHHHHHHHTSTTESEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCCccEEEEEeccc
Confidence 679999999999999999988875554
No 191
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.77 E-value=34 Score=15.88 Aligned_cols=12 Identities=8% Similarity=-0.136 Sum_probs=8.4
Q ss_pred CCcCccCCCceE
Q psy16278 2 DSTSRSEVHRPK 13 (88)
Q Consensus 2 ~~~~~~~g~k~l 13 (88)
.+.+.+.|.|++
T Consensus 15 qITIeD~GPKv~ 26 (30)
T PF07492_consen 15 QITIEDTGPKVL 26 (30)
T ss_pred EEEEecCCCeEE
Confidence 456677788876
No 192
>PRK03187 tgl transglutaminase; Provisional
Probab=22.45 E-value=1.1e+02 Score=21.60 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=18.0
Q ss_pred ccCCcCCCEEEEeCCCCCCCCC
Q psy16278 66 GLNLTGADTVIFVDHDWSPMKL 87 (88)
Q Consensus 66 Gl~L~~a~~vi~~d~~wnP~~~ 87 (88)
|-+...-+.|+|-+|+|||.+-
T Consensus 163 g~~~~PGD~vYFkNPd~~p~tp 184 (272)
T PRK03187 163 GGDFLPGDCVYFKNPDFNPATP 184 (272)
T ss_pred CCCCCCCcEEEecCCCCCCCCC
Confidence 3466778999999999999753
No 193
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=22.38 E-value=1.3e+02 Score=22.45 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=41.5
Q ss_pred cCCCceEEEEeecc------------cccCCCe--EEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCC
Q psy16278 7 SEVHRPKTSSKYTT------------CEMPGVT--YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA 72 (88)
Q Consensus 7 ~~g~k~liFs~~~~------------l~~~~~~--~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a 72 (88)
..+.|++|++.|.. |...|.. +...+.-....- +++.......- ++++.+.|.-.++....
T Consensus 34 ~~~~~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g---~~~~~~~~~~~--liItvD~G~~~~~~i~~ 108 (491)
T COG0608 34 EKGEKILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG---AIRKLKEEGAD--LIITVDNGSGSLEEIAR 108 (491)
T ss_pred HcCCEEEEEEecCcccHHHHHHHHHHHHHcCCceEEEeCCCccccch---HHHHHHhcCCC--EEEEECCCcccHHHHHH
Confidence 56889999999992 4545533 332222211111 34433332222 57778888887777664
Q ss_pred -----CEEEEeCCC
Q psy16278 73 -----DTVIFVDHD 81 (88)
Q Consensus 73 -----~~vi~~d~~ 81 (88)
-.||..|.+
T Consensus 109 ~~~~g~~vIVtDHH 122 (491)
T COG0608 109 AKELGIDVIVTDHH 122 (491)
T ss_pred HHhCCCcEEEECCC
Confidence 678888888
No 194
>PHA03050 glutaredoxin; Provisional
Probab=21.96 E-value=1.8e+02 Score=17.05 Aligned_cols=42 Identities=12% Similarity=0.003 Sum_probs=23.8
Q ss_pred CCCceEEEEeec---------ccccCCC---eEEEEECCC---CHHHHHHHHHhccC
Q psy16278 8 EVHRPKTSSKYT---------TCEMPGV---TYLRLDGSV---VSTARHAIVTKFNS 49 (88)
Q Consensus 8 ~g~k~liFs~~~---------~l~~~~~---~~~~~~G~~---~~~~R~~~v~~F~~ 49 (88)
..++++|||.-. -|...++ .|..++=.- ..+.|....+.-..
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~ 67 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG 67 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC
Confidence 457899999977 1445555 454444332 34455555555444
No 195
>PF12268 DUF3612: Protein of unknown function (DUF3612); InterPro: IPR022055 This domain family is found in bacteria, and is approximately 180 amino acids in length. The family is found in association with PF01381 from PFAM.
Probab=21.37 E-value=64 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.0
Q ss_pred CCcCCCEEEEeCCCCCCCCC
Q psy16278 68 NLTGADTVIFVDHDWSPMKL 87 (88)
Q Consensus 68 ~L~~a~~vi~~d~~wnP~~~ 87 (88)
|+.+-+||.+..-+.||+++
T Consensus 84 D~Agn~hVLCaGIDLNPAi~ 103 (178)
T PF12268_consen 84 DLAGNNHVLCAGIDLNPAID 103 (178)
T ss_pred cCCCCceeEEecccCCHhHh
Confidence 55667999999999999875
No 196
>PRK13555 azoreductase; Provisional
Probab=20.93 E-value=60 Score=21.50 Aligned_cols=17 Identities=29% Similarity=0.428 Sum_probs=14.0
Q ss_pred CcCCCEEEEeCCCCCCC
Q psy16278 69 LTGADTVIFVDHDWSPM 85 (88)
Q Consensus 69 L~~a~~vi~~d~~wnP~ 85 (88)
+..|+++++.-|-||-.
T Consensus 87 ~~~AD~lvi~~P~~n~~ 103 (208)
T PRK13555 87 FLEADKVVFAFPLWNFT 103 (208)
T ss_pred HHHcCEEEEEcCccccc
Confidence 45689999999999864
No 197
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=20.49 E-value=1.4e+02 Score=21.09 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=35.0
Q ss_pred ccCCCeEEEEECCC--CHHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 22 EMPGVTYLRLDGSV--VSTARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 22 ~~~~~~~~~~~G~~--~~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
...|+++..-.|.. ..-.=.+.++.|.+|+.++++++....+|
T Consensus 173 ~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G 217 (300)
T PLN00125 173 VGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGG 217 (300)
T ss_pred cCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCC
Confidence 44577788888887 77778899999999999999888877654
No 198
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=20.31 E-value=2.2e+02 Score=17.43 Aligned_cols=58 Identities=24% Similarity=0.422 Sum_probs=32.9
Q ss_pred CCCeEEEEECCCCHHHHHHHHHhccC-CCCCcEEEEecccc-----ccccCCcCCCEEEEeCCC
Q psy16278 24 PGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVG-----GLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 24 ~~~~~~~~~G~~~~~~R~~~v~~F~~-~~~~~v~lls~~~~-----~~Gl~L~~a~~vi~~d~~ 81 (88)
..+....+|.+.+...=...++.+.. ++...++......| ..|+....++++.++|.+
T Consensus 30 ~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D 93 (202)
T cd04184 30 PNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSALELATGEFVALLDHD 93 (202)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCC
Confidence 34567788777655444555665543 33333322222222 255566678999999887
No 199
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=20.12 E-value=64 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.7
Q ss_pred CcCCCEEEEeCCCCCCCC
Q psy16278 69 LTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 69 L~~a~~vi~~d~~wnP~~ 86 (88)
+.+|+.+|+.-|-||..+
T Consensus 85 f~aAD~vVi~~PM~Nf~i 102 (202)
T COG1182 85 FLAADKVVIAAPMYNFNI 102 (202)
T ss_pred HHhcCeEEEEecccccCC
Confidence 457899999999999754
No 200
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=20.11 E-value=2.9e+02 Score=20.19 Aligned_cols=61 Identities=13% Similarity=0.314 Sum_probs=35.0
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhcc-CCCCCcEEEEecccc-----ccccCCcCCCEEEEeCCCC
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFN-SDPTIDVLLLTTQVG-----GLGLNLTGADTVIFVDHDW 82 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~-~~~~~~v~lls~~~~-----~~Gl~L~~a~~vi~~d~~w 82 (88)
+....+.+..+|.+.+.... +.++++. ..+.++++-.....| +.|+.....++++++|.+=
T Consensus 100 q~yp~~eIivVdDgs~D~t~-~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl~~a~~d~iv~lDAD~ 166 (444)
T PRK14583 100 QTYTNIEVIAINDGSSDDTA-QVLDALLAEDPRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDA 166 (444)
T ss_pred CCCCCeEEEEEECCCCccHH-HHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCC
Confidence 34456777778766554433 4444443 344454443322222 3566666789999999873
Done!