Query psy16278
Match_columns 88
No_of_seqs 100 out of 1107
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 99.9 9.6E-23 3.3E-27 138.1 5.9 81 7-87 110-199 (271)
2 3mwy_W Chromo domain-containin 99.8 5.1E-21 1.7E-25 144.4 4.3 82 6-87 569-659 (800)
3 1z3i_X Similar to RAD54-like; 99.8 4E-20 1.4E-24 136.9 4.8 81 7-87 414-503 (644)
4 1z63_A Helicase of the SNF2/RA 99.7 2.2E-18 7.4E-23 123.1 4.9 81 7-87 339-428 (500)
5 2rb4_A ATP-dependent RNA helic 99.6 8.8E-15 3E-19 92.5 7.1 79 7-87 32-118 (175)
6 3hgt_A HDA1 complex subunit 3; 99.5 1E-14 3.5E-19 101.3 5.2 76 5-87 121-209 (328)
7 1wp9_A ATP-dependent RNA helic 99.5 3.3E-15 1.1E-19 103.8 2.6 78 7-86 359-452 (494)
8 2hjv_A ATP-dependent RNA helic 99.5 3.6E-14 1.2E-18 88.9 6.9 77 7-85 33-117 (163)
9 1t5i_A C_terminal domain of A 99.5 3.4E-14 1.2E-18 90.0 6.5 77 7-85 29-113 (172)
10 4a2p_A RIG-I, retinoic acid in 99.5 9.6E-15 3.3E-19 104.3 3.8 78 7-85 388-485 (556)
11 3tbk_A RIG-I helicase domain; 99.5 1.2E-14 4.2E-19 103.5 4.2 79 7-86 387-485 (555)
12 1fuk_A Eukaryotic initiation f 99.5 1.2E-13 3.9E-18 86.6 7.6 78 7-86 28-113 (165)
13 2p6n_A ATP-dependent RNA helic 99.5 2.5E-14 8.6E-19 92.2 4.5 78 6-85 51-136 (191)
14 2jgn_A DBX, DDX3, ATP-dependen 99.4 4.9E-14 1.7E-18 90.3 4.1 76 8-85 45-128 (185)
15 4a2w_A RIG-I, retinoic acid in 99.4 7.5E-14 2.5E-18 107.0 4.6 80 6-86 628-727 (936)
16 4a2q_A RIG-I, retinoic acid in 99.4 6.2E-14 2.1E-18 105.6 3.7 78 7-85 629-726 (797)
17 2yjt_D ATP-dependent RNA helic 99.1 1.5E-14 5.3E-19 91.1 0.0 78 7-86 28-113 (170)
18 3dmq_A RNA polymerase-associat 99.4 1.2E-13 4.2E-18 106.2 5.0 80 7-86 501-589 (968)
19 3eaq_A Heat resistant RNA depe 99.3 2E-12 6.9E-17 84.2 6.1 77 7-85 29-113 (212)
20 4gl2_A Interferon-induced heli 99.3 1.1E-12 3.6E-17 96.8 3.9 75 9-85 400-496 (699)
21 2ykg_A Probable ATP-dependent 99.3 1.8E-12 6.2E-17 95.5 3.5 79 7-86 396-494 (696)
22 3i32_A Heat resistant RNA depe 99.2 3E-11 1E-15 82.8 6.7 76 8-85 27-110 (300)
23 1xti_A Probable ATP-dependent 99.2 2.9E-11 1E-15 83.0 5.9 76 8-85 249-332 (391)
24 1hv8_A Putative ATP-dependent 99.1 5.6E-11 1.9E-15 80.6 5.7 78 6-85 235-320 (367)
25 2db3_A ATP-dependent RNA helic 99.1 5.9E-11 2E-15 84.0 5.8 77 7-85 298-382 (434)
26 2j0s_A ATP-dependent RNA helic 99.1 4.5E-11 1.5E-15 82.9 4.6 76 8-85 275-358 (410)
27 3fht_A ATP-dependent RNA helic 99.1 1.2E-10 4.3E-15 80.2 5.7 76 8-85 265-348 (412)
28 1s2m_A Putative ATP-dependent 99.1 1E-10 3.5E-15 80.7 5.1 76 8-85 257-340 (400)
29 2i4i_A ATP-dependent RNA helic 99.1 1E-10 3.5E-15 81.0 4.5 76 8-85 275-358 (417)
30 3pey_A ATP-dependent RNA helic 99.1 1.7E-10 6E-15 78.9 5.1 74 7-82 241-322 (395)
31 2z0m_A 337AA long hypothetical 99.1 3.3E-10 1.1E-14 76.1 6.3 78 6-85 217-298 (337)
32 3eiq_A Eukaryotic initiation f 99.0 1.4E-10 4.6E-15 80.2 4.4 76 8-85 279-362 (414)
33 2fwr_A DNA repair protein RAD2 99.0 9E-12 3.1E-16 88.3 -1.6 78 7-86 347-427 (472)
34 2oca_A DAR protein, ATP-depend 99.0 3.3E-10 1.1E-14 81.0 4.5 78 7-85 346-430 (510)
35 3sqw_A ATP-dependent RNA helic 99.0 8.7E-10 3E-14 80.3 6.1 77 7-85 286-373 (579)
36 1fuu_A Yeast initiation factor 99.0 6.2E-11 2.1E-15 81.3 0.0 77 8-86 258-342 (394)
37 3i5x_A ATP-dependent RNA helic 99.0 1.1E-09 3.9E-14 79.0 6.2 77 7-85 337-424 (563)
38 1oyw_A RECQ helicase, ATP-depe 98.9 1.7E-09 5.8E-14 78.5 6.7 77 7-85 234-318 (523)
39 3h1t_A Type I site-specific re 98.9 1.2E-09 4E-14 79.7 3.5 78 7-85 437-531 (590)
40 2v1x_A ATP-dependent DNA helic 98.8 4.3E-09 1.5E-13 77.6 5.8 75 8-84 266-348 (591)
41 3fmp_B ATP-dependent RNA helic 98.8 7.5E-10 2.6E-14 78.6 0.0 76 8-85 332-415 (479)
42 3fho_A ATP-dependent RNA helic 98.5 1.1E-08 3.7E-13 73.7 0.3 76 7-84 355-438 (508)
43 2eyq_A TRCF, transcription-rep 98.5 1.2E-07 4.2E-12 74.3 4.6 75 8-84 811-896 (1151)
44 1c4o_A DNA nucleotide excision 98.4 1.8E-07 6.1E-12 69.8 4.7 72 7-80 437-516 (664)
45 2d7d_A Uvrabc system protein B 98.4 2.3E-07 7.9E-12 69.2 5.1 72 7-80 443-522 (661)
46 3oiy_A Reverse gyrase helicase 98.4 1.9E-07 6.5E-12 65.0 4.4 71 8-85 251-336 (414)
47 2xgj_A ATP-dependent RNA helic 98.2 2.3E-06 7.7E-11 66.6 6.4 56 28-85 409-472 (1010)
48 1tf5_A Preprotein translocase 98.2 2.3E-06 7.7E-11 65.6 5.2 73 8-84 431-519 (844)
49 3rc3_A ATP-dependent RNA helic 98.2 2.8E-06 9.7E-11 63.7 5.7 70 10-81 321-399 (677)
50 3l9o_A ATP-dependent RNA helic 98.2 9.4E-07 3.2E-11 69.2 3.1 56 28-85 507-562 (1108)
51 1gm5_A RECG; helicase, replica 98.1 3.7E-07 1.3E-11 69.4 -0.0 74 7-82 576-668 (780)
52 2wv9_A Flavivirin protease NS2 98.0 5.4E-06 1.8E-10 62.1 4.4 71 7-84 408-486 (673)
53 3jux_A Protein translocase sub 98.0 1E-05 3.6E-10 61.6 5.5 73 8-84 473-561 (822)
54 2va8_A SSO2462, SKI2-type heli 97.9 1.2E-05 4.1E-10 59.8 5.2 49 27-77 314-362 (715)
55 1yks_A Genome polyprotein [con 97.9 1.7E-06 6E-11 61.5 -0.1 64 7-77 175-246 (440)
56 2whx_A Serine protease/ntpase/ 97.8 5.2E-06 1.8E-10 61.6 2.0 71 7-84 353-431 (618)
57 4ddu_A Reverse gyrase; topoiso 97.8 1.4E-05 4.6E-10 62.8 4.0 68 8-82 308-388 (1104)
58 2fsf_A Preprotein translocase 97.8 2.1E-05 7.3E-10 60.3 4.6 61 7-71 439-507 (853)
59 2jlq_A Serine protease subunit 97.8 2E-05 6.9E-10 56.0 4.0 66 7-79 186-259 (451)
60 2zj8_A DNA helicase, putative 97.7 1.5E-05 5.3E-10 59.3 2.9 49 27-77 296-344 (720)
61 2z83_A Helicase/nucleoside tri 97.7 6.1E-06 2.1E-10 58.9 0.0 64 7-77 188-259 (459)
62 2xau_A PRE-mRNA-splicing facto 97.7 1.8E-05 6.3E-10 60.0 2.6 72 8-80 302-396 (773)
63 2p6r_A Afuhel308 helicase; pro 97.7 1.5E-05 5.1E-10 59.3 2.0 49 27-77 298-346 (702)
64 1gku_B Reverse gyrase, TOP-RG; 97.6 4.5E-05 1.5E-09 59.5 4.4 69 6-81 272-352 (1054)
65 1nkt_A Preprotein translocase 97.6 7.5E-05 2.6E-09 57.8 5.3 62 7-72 458-527 (922)
66 2v6i_A RNA helicase; membrane, 97.6 2.9E-05 9.9E-10 55.0 2.2 65 7-78 169-241 (431)
67 4a4z_A Antiviral helicase SKI2 97.5 9.2E-05 3.1E-09 57.6 4.3 52 27-81 401-452 (997)
68 3o8b_A HCV NS3 protease/helica 96.9 0.0011 3.8E-08 49.8 4.7 60 8-77 395-462 (666)
69 4f92_B U5 small nuclear ribonu 93.4 0.08 2.7E-06 43.6 4.3 48 27-76 1215-1262(1724)
70 4f92_B U5 small nuclear ribonu 92.8 0.064 2.2E-06 44.1 2.9 49 27-77 380-428 (1724)
71 2vl7_A XPD; helicase, unknown 90.1 0.23 7.7E-06 36.0 3.2 53 29-85 409-466 (540)
72 4a15_A XPD helicase, ATP-depen 86.0 2 6.7E-05 31.8 6.0 72 8-84 448-529 (620)
73 2w00_A HSDR, R.ECOR124I; ATP-b 83.1 1.5 5.2E-05 34.6 4.5 42 39-83 637-678 (1038)
74 3zyw_A Glutaredoxin-3; metal b 60.0 13 0.00043 21.1 3.6 39 8-46 14-66 (111)
75 2lqo_A Putative glutaredoxin R 54.0 25 0.00087 19.2 5.2 38 10-47 4-50 (92)
76 3ipz_A Monothiol glutaredoxin- 53.1 27 0.00094 19.3 4.6 41 8-48 16-70 (109)
77 1wik_A Thioredoxin-like protei 44.2 39 0.0013 18.5 5.3 41 9-49 14-68 (109)
78 3crv_A XPD/RAD3 related DNA he 43.4 54 0.0018 23.5 5.4 71 8-83 393-474 (551)
79 1u6t_A SH3 domain-binding glut 43.2 29 0.00098 20.3 3.4 28 21-48 26-53 (121)
80 1gm5_A RECG; helicase, replica 42.6 46 0.0016 25.4 5.1 73 8-81 416-500 (780)
81 3qmx_A Glutaredoxin A, glutare 40.0 46 0.0016 18.1 4.7 41 7-47 13-62 (99)
82 2wul_A Glutaredoxin related pr 39.6 55 0.0019 18.9 4.8 49 9-57 19-82 (118)
83 1qg8_A Protein (spore coat pol 38.8 33 0.0011 21.2 3.4 59 22-81 27-98 (255)
84 2yan_A Glutaredoxin-3; oxidore 33.8 59 0.002 17.5 4.0 41 9-49 16-70 (105)
85 3gx8_A Monothiol glutaredoxin- 33.6 62 0.0021 18.3 3.8 40 9-48 15-71 (121)
86 1jr5_A 10 kDa anti-sigma facto 31.0 21 0.00071 20.1 1.3 24 27-50 53-76 (90)
87 2wci_A Glutaredoxin-4; redox-a 30.3 85 0.0029 18.3 4.9 48 10-58 35-96 (135)
88 2wem_A Glutaredoxin-related pr 27.8 88 0.003 17.7 4.9 49 9-58 19-82 (118)
89 2q79_A Regulatory protein E2; 27.7 86 0.0029 17.6 3.6 30 35-64 54-83 (93)
90 2eyq_A TRCF, transcription-rep 26.0 1.4E+02 0.0049 23.7 5.6 69 8-77 651-731 (1151)
91 1oi7_A Succinyl-COA synthetase 23.8 52 0.0018 21.8 2.5 43 22-64 167-211 (288)
92 2yv2_A Succinyl-COA synthetase 23.8 52 0.0018 21.9 2.5 43 22-64 174-218 (297)
93 2yv1_A Succinyl-COA ligase [AD 23.1 52 0.0018 21.9 2.4 43 22-64 173-217 (294)
94 3kto_A Response regulator rece 22.4 1E+02 0.0035 16.7 3.3 56 6-61 27-89 (136)
95 1ef8_A Methylmalonyl COA decar 22.3 1.3E+02 0.0045 19.3 4.2 32 39-71 35-70 (261)
96 1aba_A Glutaredoxin; electron 22.2 92 0.0031 16.0 4.9 39 11-49 1-57 (87)
97 2ypj_A Eccel5A, endoglucanase 21.9 22 0.00075 21.1 0.3 40 10-50 80-120 (155)
98 4ba6_A Endoglucanase CEL5A; ca 21.9 22 0.00075 20.9 0.3 39 10-49 61-100 (144)
99 4eml_A Naphthoate synthase; 1, 21.7 79 0.0027 20.7 3.0 31 41-71 43-81 (275)
100 3lno_A Putative uncharacterize 21.5 33 0.0011 19.3 1.0 16 72-87 81-96 (108)
101 3f6p_A Transcriptional regulat 21.2 1E+02 0.0035 16.3 3.1 54 7-60 24-81 (120)
102 3r8j_A Heme-binding protein 2; 20.4 1.4E+02 0.0049 18.9 4.0 48 26-84 140-188 (212)
103 2l82_A Designed protein OR32; 20.2 1.4E+02 0.005 17.5 3.9 29 21-49 22-50 (162)
104 4eaz_C Transcription cofactor 20.1 40 0.0014 17.3 1.0 10 10-19 20-29 (60)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.87 E-value=9.6e-23 Score=138.14 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=74.3
Q ss_pred cCCCceEEEEeecc--------ccc-CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYTT--------CEM-PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~-~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
++|+|+||||+|.. |.. .|+++..++|+++.++|++++++|++++.+.|+|+++++||+||||++|++||+
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 189 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE
T ss_pred hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE
Confidence 37899999999983 444 389999999999999999999999998788899999999999999999999999
Q ss_pred eCCCCCCCCC
Q psy16278 78 VDHDWSPMKL 87 (88)
Q Consensus 78 ~d~~wnP~~~ 87 (88)
+|++|||+.+
T Consensus 190 ~d~~wnp~~~ 199 (271)
T 1z5z_A 190 FDRWWNPAVE 199 (271)
T ss_dssp CSCCSCTTTC
T ss_pred ECCCCChhHH
Confidence 9999999875
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.1e-21 Score=144.36 Aligned_cols=82 Identities=39% Similarity=0.633 Sum_probs=74.3
Q ss_pred ccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCC-CCCcEEEEeccccccccCCcCCCEEE
Q psy16278 6 RSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSD-PTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 6 ~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~-~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
...|+|+||||||.. |...|+++.+++|+++..+|++++++|+.. ....++|+|+++||+||||++|++||
T Consensus 569 ~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI 648 (800)
T 3mwy_W 569 KKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV 648 (800)
T ss_dssp TTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE
T ss_pred hhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE
Confidence 467899999999993 677799999999999999999999999984 45568999999999999999999999
Q ss_pred EeCCCCCCCCC
Q psy16278 77 FVDHDWSPMKL 87 (88)
Q Consensus 77 ~~d~~wnP~~~ 87 (88)
++|++|||+.+
T Consensus 649 ~~D~~wnp~~~ 659 (800)
T 3mwy_W 649 IFDSDWNPQAD 659 (800)
T ss_dssp ESSCCSCSHHH
T ss_pred EecCCCChhhH
Confidence 99999999753
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=4e-20 Score=136.93 Aligned_cols=81 Identities=33% Similarity=0.642 Sum_probs=73.3
Q ss_pred cCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCC-CcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPT-IDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~-~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
..++|+||||+|.. |...|+++.+++|+++.++|++++++|++++. ..++|+++++||+||||++|++||+
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~ 493 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM 493 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE
Confidence 36899999999993 66679999999999999999999999998654 4589999999999999999999999
Q ss_pred eCCCCCCCCC
Q psy16278 78 VDHDWSPMKL 87 (88)
Q Consensus 78 ~d~~wnP~~~ 87 (88)
+||+|||+.+
T Consensus 494 ~d~~wnp~~~ 503 (644)
T 1z3i_X 494 FDPDWNPAND 503 (644)
T ss_dssp CSCCSSHHHH
T ss_pred ECCCCCccHH
Confidence 9999999753
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.73 E-value=2.2e-18 Score=123.12 Aligned_cols=81 Identities=27% Similarity=0.510 Sum_probs=70.4
Q ss_pred cCCCceEEEEeecc--------ccc-CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYTT--------CEM-PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~-~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+|.|+|||+++.. +.. .++++..++|+++.++|++++++|++++.+.++|++++++++|+|+++|++||+
T Consensus 339 ~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 339 DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 47899999999983 444 388999999999999999999999998778888999999999999999999999
Q ss_pred eCCCCCCCCC
Q psy16278 78 VDHDWSPMKL 87 (88)
Q Consensus 78 ~d~~wnP~~~ 87 (88)
+|++|||+.+
T Consensus 419 ~d~~~~~~~~ 428 (500)
T 1z63_A 419 FDRWWNPAVE 428 (500)
T ss_dssp SSCCSCC---
T ss_pred eCCCCCcchH
Confidence 9999999865
No 5
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=8.8e-15 Score=92.54 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=67.3
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.|+|||++.. .|...++.+..++|++++.+|.++++.|++. ..++ |++++++++|+|+..+++||++
T Consensus 32 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~v-LvaT~~~~~Gid~~~~~~Vi~~ 109 (175)
T 2rb4_A 32 ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKV-LITTNVCARGIDVKQVTIVVNF 109 (175)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSE-EEECCSCCTTTCCTTEEEEEES
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeE-EEEecchhcCCCcccCCEEEEe
Confidence 3567999999988 3777899999999999999999999999974 4444 7788999999999999999999
Q ss_pred CCCCCCCCC
Q psy16278 79 DHDWSPMKL 87 (88)
Q Consensus 79 d~~wnP~~~ 87 (88)
|++|+|+.+
T Consensus 110 d~p~~~~~~ 118 (175)
T 2rb4_A 110 DLPVKQGEE 118 (175)
T ss_dssp SCCC--CCS
T ss_pred CCCCCcccc
Confidence 999998653
No 6
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.52 E-value=1e-14 Score=101.35 Aligned_cols=76 Identities=17% Similarity=0.069 Sum_probs=57.8
Q ss_pred CccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccC-----CcC
Q psy16278 5 SRSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLN-----LTG 71 (88)
Q Consensus 5 ~~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~-----L~~ 71 (88)
+++.|+|+|||||+.+ +..++++|.|+||+...++ ++. ....+.++|++ .+||.|+| ++.
T Consensus 121 l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~-----~~~~~~i~Llt-sag~~gin~~~~nl~~ 193 (328)
T 3hgt_A 121 VQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA-----NDFSCTVHLFS-SEGINFTKYPIKSKAR 193 (328)
T ss_dssp HTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEEEEEE-SSCCCTTTSCCCCCSC
T ss_pred HHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc-----ccCCceEEEEE-CCCCCCcCcccccCCC
Confidence 4578999999999994 7778999999999965433 221 13456777774 68888876 899
Q ss_pred CCEEEEeCCCCCCCCC
Q psy16278 72 ADTVIFVDHDWSPMKL 87 (88)
Q Consensus 72 a~~vi~~d~~wnP~~~ 87 (88)
|+.||++|++|||+.+
T Consensus 194 aD~VI~~DsdwNp~~d 209 (328)
T 3hgt_A 194 FDMLICLDTTVDTSQK 209 (328)
T ss_dssp CSEEEECSTTCCTTSH
T ss_pred CCEEEEECCCCCCCCh
Confidence 9999999999999864
No 7
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.52 E-value=3.3e-15 Score=103.82 Aligned_cols=78 Identities=22% Similarity=0.357 Sum_probs=66.4
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEEC--------CCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDG--------SVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT 70 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G--------~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~ 70 (88)
.++.|+|||+++. .|...++++..++| +++.++|+++++.|+++. +.| |+++.++++|+|++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-~~v-Lv~T~~~~~Gldl~ 436 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE-FNV-LVATSVGEEGLDVP 436 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS-CSE-EEECGGGGGGGGST
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC-ceE-EEECCccccCCCch
Confidence 4789999999998 26666999999999 999999999999999854 444 77889999999999
Q ss_pred CCCEEEEeCCCCCCCC
Q psy16278 71 GADTVIFVDHDWSPMK 86 (88)
Q Consensus 71 ~a~~vi~~d~~wnP~~ 86 (88)
++++||++|++|||..
T Consensus 437 ~~~~Vi~~d~~~~~~~ 452 (494)
T 1wp9_A 437 EVDLVVFYEPVPSAIR 452 (494)
T ss_dssp TCCEEEESSCCHHHHH
T ss_pred hCCEEEEeCCCCCHHH
Confidence 9999999999999863
No 8
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.51 E-value=3.6e-14 Score=88.90 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=68.0
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.|+|||++.. .|...++++..++|++++.+|.++++.|+.. ...+ |++++++++|+|+..+++||++
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~Gld~~~~~~Vi~~ 110 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRY-LVATDVAARGIDIENISLVINY 110 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE-EEECGGGTTTCCCSCCSEEEES
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeE-EEECChhhcCCchhcCCEEEEe
Confidence 4567999999988 3677799999999999999999999999984 4444 6788999999999999999999
Q ss_pred CCCCCCC
Q psy16278 79 DHDWSPM 85 (88)
Q Consensus 79 d~~wnP~ 85 (88)
+++|+|.
T Consensus 111 ~~p~~~~ 117 (163)
T 2hjv_A 111 DLPLEKE 117 (163)
T ss_dssp SCCSSHH
T ss_pred CCCCCHH
Confidence 9999975
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.51 E-value=3.4e-14 Score=89.96 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=67.8
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.|+|||++.. .|...++++..++|++++.+|.++++.|++ +...+ |++++++++|+|+..+++||++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~-g~~~v-LvaT~~~~~Gldi~~~~~Vi~~ 106 (172)
T 1t5i_A 29 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD-FQRRI-LVATNLFGRGMDIERVNIAFNY 106 (172)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-TSCSE-EEESSCCSTTCCGGGCSEEEES
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-CCCcE-EEECCchhcCcchhhCCEEEEE
Confidence 3567999999988 366779999999999999999999999997 44455 6778999999999999999999
Q ss_pred CCCCCCC
Q psy16278 79 DHDWSPM 85 (88)
Q Consensus 79 d~~wnP~ 85 (88)
|++|+|.
T Consensus 107 d~p~~~~ 113 (172)
T 1t5i_A 107 DMPEDSD 113 (172)
T ss_dssp SCCSSHH
T ss_pred CCCCCHH
Confidence 9999975
No 10
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.50 E-value=9.6e-15 Score=104.35 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=31.1
Q ss_pred cCCCceEEEEeecc--------ccc------------CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 7 SEVHRPKTSSKYTT--------CEM------------PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~------------~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
.+++|+|||+++.. |.. .|..+..++|+++.++|.+++++|++++.+.| |++|+++++|
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v-LvaT~~~~~G 466 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL-LIATSVADEG 466 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCE-EEEEC-----
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEE-EEEcCchhcC
Confidence 56899999999882 322 25666677888999999999999999666665 6788999999
Q ss_pred cCCcCCCEEEEeCCCCCCC
Q psy16278 67 LNLTGADTVIFVDHDWSPM 85 (88)
Q Consensus 67 l~L~~a~~vi~~d~~wnP~ 85 (88)
||+.++++||+||++|||.
T Consensus 467 iDip~v~~VI~~d~p~s~~ 485 (556)
T 4a2p_A 467 IDIVQCNLVVLYEYSGNVT 485 (556)
T ss_dssp ------CEEEEETCCSCHH
T ss_pred CCchhCCEEEEeCCCCCHH
Confidence 9999999999999999985
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.49 E-value=1.2e-14 Score=103.51 Aligned_cols=79 Identities=15% Similarity=0.213 Sum_probs=44.0
Q ss_pred cCCCceEEEEeecc--------cc------------cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 7 SEVHRPKTSSKYTT--------CE------------MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~------------~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
.++.|+|||+++.. |. ..|..+..++|+++.++|.+++++|++++...| |++|+++++|
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v-LvaT~~~~~G 465 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI-LIATSVADEG 465 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSE-EEECCCTTCC
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeE-EEEcchhhcC
Confidence 45789999999882 22 235567777889999999999999998666666 6788999999
Q ss_pred cCCcCCCEEEEeCCCCCCCC
Q psy16278 67 LNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 67 l~L~~a~~vi~~d~~wnP~~ 86 (88)
+|+.++++||+||++|||..
T Consensus 466 lDlp~v~~VI~~d~p~s~~~ 485 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIK 485 (555)
T ss_dssp EETTSCSEEEEESCCSSCCC
T ss_pred CccccCCEEEEeCCCCCHHH
Confidence 99999999999999999975
No 12
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.48 E-value=1.2e-13 Score=86.64 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=68.2
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.|+|||++.. .|...++.+..++|++++.+|.++++.|+.. ..++ |++++++++|+|+..+++||++
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~~G~d~~~~~~Vi~~ 105 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRI-LISTDLLARGIDVQQVSLVINY 105 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE-EEEEGGGTTTCCCCSCSEEEES
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEE-EEEcChhhcCCCcccCCEEEEe
Confidence 3568999999988 3667799999999999999999999999974 4455 6677999999999999999999
Q ss_pred CCCCCCCC
Q psy16278 79 DHDWSPMK 86 (88)
Q Consensus 79 d~~wnP~~ 86 (88)
|++|+|..
T Consensus 106 ~~p~~~~~ 113 (165)
T 1fuk_A 106 DLPANKEN 113 (165)
T ss_dssp SCCSSGGG
T ss_pred CCCCCHHH
Confidence 99999864
No 13
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=92.21 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=68.0
Q ss_pred ccCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 6 RSEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 6 ~~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
...+.|+|||++... |...++++..++|++++++|.++++.|++. ...| |++++++++|+|+..+++||+
T Consensus 51 ~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~v-LvaT~~~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 51 QKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDV-LVATDVASKGLDFPAIQHVIN 128 (191)
T ss_dssp TTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSE-EEECHHHHTTCCCCCCSEEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEE-EEEcCchhcCCCcccCCEEEE
Confidence 345679999999982 666799999999999999999999999974 4444 777899999999999999999
Q ss_pred eCCCCCCC
Q psy16278 78 VDHDWSPM 85 (88)
Q Consensus 78 ~d~~wnP~ 85 (88)
+|++|+|.
T Consensus 129 ~d~p~~~~ 136 (191)
T 2p6n_A 129 YDMPEEIE 136 (191)
T ss_dssp SSCCSSHH
T ss_pred eCCCCCHH
Confidence 99999975
No 14
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.45 E-value=4.9e-14 Score=90.31 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=53.5
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
++.|+|||++.. .|...|+++..++|++++.+|.++++.|+.. ...+ |++++++++|+|+..+++||++|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPI-LVATAVAARGLDISNVKHVINFD 122 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSE-EEEEC------CCCSBSEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeE-EEEcChhhcCCCcccCCEEEEeC
Confidence 578999999998 3677799999999999999999999999973 4444 67779999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|+|.
T Consensus 123 ~p~s~~ 128 (185)
T 2jgn_A 123 LPSDIE 128 (185)
T ss_dssp CCSSHH
T ss_pred CCCCHH
Confidence 999975
No 15
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.43 E-value=7.5e-14 Score=107.04 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=37.6
Q ss_pred ccCCCceEEEEeecc--------ccc------------CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEecccccc
Q psy16278 6 RSEVHRPKTSSKYTT--------CEM------------PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGL 65 (88)
Q Consensus 6 ~~~g~k~liFs~~~~--------l~~------------~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~ 65 (88)
..+++|+|||+++.+ |.. .|..+..++|+++..+|.+++++|+.++.+.| |++|+++++
T Consensus 628 ~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~V-LVaT~~~~e 706 (936)
T 4a2w_A 628 YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL-LIATSVADE 706 (936)
T ss_dssp SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSE-EEEECC---
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeE-EEEeCchhc
Confidence 356899999999982 322 26666777889999999999999998565665 778899999
Q ss_pred ccCCcCCCEEEEeCCCCCCCC
Q psy16278 66 GLNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 66 Gl~L~~a~~vi~~d~~wnP~~ 86 (88)
|||+..+++||+||++|||..
T Consensus 707 GIDlp~v~~VI~yD~p~s~~~ 727 (936)
T 4a2w_A 707 GIDIVQCNLVVLYEYSGNVTK 727 (936)
T ss_dssp ---CCCCSEEEEESCCSCSHH
T ss_pred CCcchhCCEEEEeCCCCCHHH
Confidence 999999999999999999963
No 16
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.42 E-value=6.2e-14 Score=105.57 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=35.4
Q ss_pred cCCCceEEEEeecc--------cc------------cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 7 SEVHRPKTSSKYTT--------CE------------MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~------------~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
.++.|+|||+++.. |. ..|..+..++|+++..+|.+++++|++++.+.| |++|+++++|
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~v-LVaT~~~~~G 707 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL-LIATSVADEG 707 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSE-EEEECC----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceE-EEEcCchhcC
Confidence 56799999999882 32 246677788899999999999999999566665 6788999999
Q ss_pred cCCcCCCEEEEeCCCCCCC
Q psy16278 67 LNLTGADTVIFVDHDWSPM 85 (88)
Q Consensus 67 l~L~~a~~vi~~d~~wnP~ 85 (88)
||+.++++||+||++|||.
T Consensus 708 IDlp~v~~VI~yd~p~s~~ 726 (797)
T 4a2q_A 708 IDIVQCNLVVLYEYSGNVT 726 (797)
T ss_dssp ---CCCSEEEEESCCSCHH
T ss_pred CCchhCCEEEEeCCCCCHH
Confidence 9999999999999999985
No 17
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.13 E-value=1.5e-14 Score=91.14 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=68.1
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.|+|||++.. .|...++.+..++|++++.+|.++++.|++. ... +|++++++++|+|+.++++||++
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~-vLvaT~~~~~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVN-VLVATDVAARGIDIPDVSHVFNF 105 (170)
Confidence 4567999999988 2666788999999999999999999999974 334 47788999999999999999999
Q ss_pred CCCCCCCC
Q psy16278 79 DHDWSPMK 86 (88)
Q Consensus 79 d~~wnP~~ 86 (88)
+++|+|..
T Consensus 106 ~~p~~~~~ 113 (170)
T 2yjt_D 106 DMPRSGDT 113 (170)
Confidence 99999864
No 18
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.42 E-value=1.2e-13 Score=106.23 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=69.3
Q ss_pred cCCCceEEEEeecc--------cc-cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYTT--------CE-MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~-~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.++.|+|||+++.. |. ..|+++..++|+++..+|.++++.|++.++...+|++++++++|+|+.++++||+
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~ 580 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM 580 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE
Confidence 46889999999982 54 4599999999999999999999999996533334678899999999999999999
Q ss_pred eCCCCCCCC
Q psy16278 78 VDHDWSPMK 86 (88)
Q Consensus 78 ~d~~wnP~~ 86 (88)
+|++|||..
T Consensus 581 ~d~p~~~~~ 589 (968)
T 3dmq_A 581 FDLPFNPDL 589 (968)
T ss_dssp SSCCSSHHH
T ss_pred ecCCCCHHH
Confidence 999999863
No 19
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.33 E-value=2e-12 Score=84.20 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=67.7
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
.++.++|||++.. .|...++....++|++++++|.++++.|+.. ..+| |++|.++++|+|+..+++||++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~v-lvaT~~~~~Gidi~~v~~Vi~~ 106 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRV-LVATDVAARGLDIPQVDLVVHY 106 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCE-EEECTTTTCSSSCCCBSEEEES
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeE-EEecChhhcCCCCccCcEEEEC
Confidence 3577999999987 2666799999999999999999999999984 4455 7788999999999999999999
Q ss_pred CCCCCCC
Q psy16278 79 DHDWSPM 85 (88)
Q Consensus 79 d~~wnP~ 85 (88)
+++|+|.
T Consensus 107 ~~p~~~~ 113 (212)
T 3eaq_A 107 RLPDRAE 113 (212)
T ss_dssp SCCSSHH
T ss_pred CCCcCHH
Confidence 9999875
No 20
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.30 E-value=1.1e-12 Score=96.80 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=62.1
Q ss_pred CCceEEEEeecc--------cccC------CCeEEEEECC--------CCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 9 VHRPKTSSKYTT--------CEMP------GVTYLRLDGS--------VVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 9 g~k~liFs~~~~--------l~~~------~~~~~~~~G~--------~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
+.|+|||+++.+ |... |+++..++|+ ++..+|.+++++|++ +...| |++|.++++|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~-g~~~V-LVaT~~~~~G 477 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT-GKINL-LIATTVAEEG 477 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CC-SEEECSCCTT
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc-CCCcE-EEEccccccC
Confidence 899999999982 3333 8999999999 999999999999998 44444 7788999999
Q ss_pred cCCcCCCEEEEeCCCCCCC
Q psy16278 67 LNLTGADTVIFVDHDWSPM 85 (88)
Q Consensus 67 l~L~~a~~vi~~d~~wnP~ 85 (88)
||+.++++||+||++|||.
T Consensus 478 IDip~v~~VI~~d~p~s~~ 496 (699)
T 4gl2_A 478 LDIKECNIVIRYGLVTNEI 496 (699)
T ss_dssp SCCCSCCCCEEESCCCCHH
T ss_pred CccccCCEEEEeCCCCCHH
Confidence 9999999999999999985
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.27 E-value=1.8e-12 Score=95.52 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=43.7
Q ss_pred cCCCceEEEEeecc--------cccCC----CeEEEEE--------CCCCHHHHHHHHHhccCCCCCcEEEEeccccccc
Q psy16278 7 SEVHRPKTSSKYTT--------CEMPG----VTYLRLD--------GSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLG 66 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~~~----~~~~~~~--------G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~G 66 (88)
.++.++|||+++.. |...+ +++..++ |++++++|.++++.|+.++..+| |++|.++++|
T Consensus 396 ~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~v-LVaT~v~~~G 474 (696)
T 2ykg_A 396 NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEG 474 (696)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSC-SEEEESSCCC
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccE-EEEechhhcC
Confidence 36789999999982 44445 7888885 49999999999999998555566 7888999999
Q ss_pred cCCcCCCEEEEeCCCCCCCC
Q psy16278 67 LNLTGADTVIFVDHDWSPMK 86 (88)
Q Consensus 67 l~L~~a~~vi~~d~~wnP~~ 86 (88)
||+.++++||+||++|||..
T Consensus 475 iDip~v~~VI~~d~p~s~~~ 494 (696)
T 2ykg_A 475 IDIAQCNLVILYEYVGNVIK 494 (696)
T ss_dssp ---CCCSEEEEESCC--CCC
T ss_pred CcCccCCEEEEeCCCCCHHH
Confidence 99999999999999999864
No 22
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.20 E-value=3e-11 Score=82.80 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=67.7
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
++.++|||++.. .|...++....++|++++.+|.++++.|+.. ..+| |++|.++++|+|+..+++||+++
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~v-LVaT~va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRV-LVATDVAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCE-EEECSTTTCSTTCCCCSEEEESS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceE-EEEechhhcCccccceeEEEEcC
Confidence 478999999987 3667899999999999999999999999974 3444 77789999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 105 ~p~s~~ 110 (300)
T 3i32_A 105 MPDRAE 110 (300)
T ss_dssp CCSSTT
T ss_pred CCCCHH
Confidence 999985
No 23
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.18 E-value=2.9e-11 Score=83.02 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.|+|||++.. .|...+++...++|+++.++|.++++.|++.. .. +|+++.++++|+|+.++++||+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC-CS-EEEESCCCSSCBCCTTEEEEEESS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-Cc-EEEECChhhcCCCcccCCEEEEeC
Confidence 568999999988 36677999999999999999999999998743 34 477889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 327 ~p~s~~ 332 (391)
T 1xti_A 327 MPEDSD 332 (391)
T ss_dssp CCSSHH
T ss_pred CCCCHH
Confidence 999874
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=5.6e-11 Score=80.62 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=68.3
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
+..+.++|||++.. .|...++.+..++|+++.++|.++++.|++. ...| |+++.++++|+|+.++++||+
T Consensus 235 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~v-lv~T~~~~~Gid~~~~~~Vi~ 312 (367)
T 1hv8_A 235 KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRI-LIATDVMSRGIDVNDLNCVIN 312 (367)
T ss_dssp CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSE-EEECTTHHHHCCCSCCSEEEE
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeE-EEECChhhcCCCcccCCEEEE
Confidence 46778999999987 3667789999999999999999999999974 4444 778899999999999999999
Q ss_pred eCCCCCCC
Q psy16278 78 VDHDWSPM 85 (88)
Q Consensus 78 ~d~~wnP~ 85 (88)
++++|++.
T Consensus 313 ~~~~~s~~ 320 (367)
T 1hv8_A 313 YHLPQNPE 320 (367)
T ss_dssp SSCCSCHH
T ss_pred ecCCCCHH
Confidence 99999874
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.14 E-value=5.9e-11 Score=83.96 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=66.6
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||++.. .|...+++...++|++++++|.++++.|++. ... +|++|+++++|+|+.++++||++
T Consensus 298 ~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-vLvaT~v~~rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 298 EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SMK-VLIATSVASRGLDIKNIKHVINY 375 (434)
T ss_dssp HCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SCS-EEEECGGGTSSCCCTTCCEEEES
T ss_pred hCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CCc-EEEEchhhhCCCCcccCCEEEEE
Confidence 3455699999988 3677799999999999999999999999984 344 47888999999999999999999
Q ss_pred CCCCCCC
Q psy16278 79 DHDWSPM 85 (88)
Q Consensus 79 d~~wnP~ 85 (88)
|+++++.
T Consensus 376 d~p~~~~ 382 (434)
T 2db3_A 376 DMPSKID 382 (434)
T ss_dssp SCCSSHH
T ss_pred CCCCCHH
Confidence 9998763
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.12 E-value=4.5e-11 Score=82.87 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=66.5
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.|+|||++.. .|...++.+..++|+++.++|.++++.|+++. .+ +|++++++++|+|+.++++||+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA-SR-VLISTDVWARGLDVPQVSLIINYD 352 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS-SC-EEEECGGGSSSCCCTTEEEEEESS
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC-CC-EEEECChhhCcCCcccCCEEEEEC
Confidence 346999999987 36677899999999999999999999999743 44 477889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 353 ~p~s~~ 358 (410)
T 2j0s_A 353 LPNNRE 358 (410)
T ss_dssp CCSSHH
T ss_pred CCCCHH
Confidence 999874
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.09 E-value=1.2e-10 Score=80.23 Aligned_cols=76 Identities=18% Similarity=0.240 Sum_probs=67.0
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.|+|||++.. .|...++.+..++|+++.++|.++++.|+++. .+ +|++|.++++|+|+.++++||+++
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECGGGTSSCCCTTEEEEEESS
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC-Cc-EEEEcCccccCCCccCCCEEEEEC
Confidence 567999999987 36667899999999999999999999999843 44 478889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|+|.
T Consensus 343 ~p~~~~ 348 (412)
T 3fht_A 343 LPVDKD 348 (412)
T ss_dssp CCBCSS
T ss_pred CCCCCC
Confidence 999874
No 28
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.09 E-value=1e-10 Score=80.71 Aligned_cols=76 Identities=12% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.|+|||++.. .+...++.+..++|+++..+|.++++.|+++. .+ +|+++.++++|+|+.++++||+++
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK-VR-TLVCSDLLTRGIDIQAVNVVINFD 334 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS-SS-EEEESSCSSSSCCCTTEEEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEcCccccCCCccCCCEEEEeC
Confidence 567999999987 25666889999999999999999999998743 44 477889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 335 ~p~s~~ 340 (400)
T 1s2m_A 335 FPKTAE 340 (400)
T ss_dssp CCSSHH
T ss_pred CCCCHH
Confidence 999874
No 29
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=81.03 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=66.9
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.++|||++.. .|...++.+..++|+++.++|.++++.|++. ..+ +|++|+++++|+|+.++++||+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlvaT~~~~~Gidip~v~~Vi~~~ 352 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSP-ILVATAVAARGLDISNVKHVINFD 352 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-SSC-EEEECHHHHTTSCCCCEEEEEESS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC-CCC-EEEECChhhcCCCcccCCEEEEEc
Confidence 578999999988 3667799999999999999999999999873 344 477889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 353 ~p~s~~ 358 (417)
T 2i4i_A 353 LPSDIE 358 (417)
T ss_dssp CCSSHH
T ss_pred CCCCHH
Confidence 999864
No 30
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.06 E-value=1.7e-10 Score=78.86 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=65.3
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||++.. .+...++.+..++|+++.++|.++++.|+++. .. +|+++.++++|+|+.++++||++
T Consensus 241 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 241 MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR-SK-VLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CC-EEEECGGGSSSCCCTTEEEEEES
T ss_pred ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC-CC-EEEECChhhcCCCcccCCEEEEc
Confidence 3567999999987 36777899999999999999999999999843 44 47888999999999999999999
Q ss_pred CCCC
Q psy16278 79 DHDW 82 (88)
Q Consensus 79 d~~w 82 (88)
+++|
T Consensus 319 ~~p~ 322 (395)
T 3pey_A 319 DLPT 322 (395)
T ss_dssp SCCB
T ss_pred CCCC
Confidence 9998
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.05 E-value=3.3e-10 Score=76.11 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=64.2
Q ss_pred ccCCCceEEEEeecc----cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 6 RSEVHRPKTSSKYTT----CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 6 ~~~g~k~liFs~~~~----l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
...+.++|||++..+ +...-.+...++|+++..+|.+.++.|+++. .. +|+++.++++|+|+..+++||+++++
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~ 294 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREGE-YD-MLITTDVASRGLDIPLVEKVINFDAP 294 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECHHHHTTCCCCCBSEEEESSCC
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcCC-Cc-EEEEcCccccCCCccCCCEEEEecCC
Confidence 356789999999882 2222226789999999999999999999843 44 47788999999999999999999999
Q ss_pred CCCC
Q psy16278 82 WSPM 85 (88)
Q Consensus 82 wnP~ 85 (88)
|++.
T Consensus 295 ~s~~ 298 (337)
T 2z0m_A 295 QDLR 298 (337)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 9874
No 32
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=80.20 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=60.8
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.|+|||++.. .+...++.+..++|+++.++|.++++.|+++. .+| |+++.++++|+|+.++++||+++
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~v-lv~T~~~~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS-SRV-LITTDLLARGIDVQQVSLVINYD 356 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----C-EEECSSCC--CCGGGCSCEEESS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC-CcE-EEECCccccCCCccCCCEEEEeC
Confidence 457999999987 36777899999999999999999999998843 344 78889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 357 ~p~s~~ 362 (414)
T 3eiq_A 357 LPTNRE 362 (414)
T ss_dssp CCSSTH
T ss_pred CCCCHH
Confidence 999874
No 33
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.05 E-value=9e-12 Score=88.31 Aligned_cols=78 Identities=10% Similarity=0.104 Sum_probs=62.9
Q ss_pred cCCCceEEEEeeccc---ccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCC
Q psy16278 7 SEVHRPKTSSKYTTC---EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 83 (88)
Q Consensus 7 ~~g~k~liFs~~~~l---~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wn 83 (88)
..+.|+|||+++... -...+.+..++|+++..+|+++++.|++ +...| |++++++++|+|+.++++||+++++||
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~-g~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~~~~s 424 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRT-GRFRA-IVSSQVLDEGIDVPDANVGVIMSGSGS 424 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHH-SSCSB-CBCSSCCCSSSCSCCBSEEEEECCSSC
T ss_pred CCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhC-CCCCE-EEEcCchhcCcccccCcEEEEECCCCC
Confidence 358899999999830 0011124568999999999999999998 44555 678899999999999999999999999
Q ss_pred CCC
Q psy16278 84 PMK 86 (88)
Q Consensus 84 P~~ 86 (88)
|..
T Consensus 425 ~~~ 427 (472)
T 2fwr_A 425 ARE 427 (472)
T ss_dssp CHH
T ss_pred HHH
Confidence 863
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.99 E-value=3.3e-10 Score=80.96 Aligned_cols=78 Identities=10% Similarity=0.032 Sum_probs=64.8
Q ss_pred cCCCceEEEEeec-------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 7 SEVHRPKTSSKYT-------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 7 ~~g~k~liFs~~~-------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
..+.++|||++.. .|...+.++..++|+++..+|.++++.|++ +...|++.+..+++.|+|+.++++||+++
T Consensus 346 ~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~-g~~~vLv~T~~~~~~GiDip~v~~vi~~~ 424 (510)
T 2oca_A 346 KDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN-GKGIIIVASYGVFSTGISVKNLHHVVLAH 424 (510)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH-CCSCEEEEEHHHHHHSCCCCSEEEEEESS
T ss_pred cCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC-CCCCEEEEEcChhhcccccccCcEEEEeC
Confidence 3567888998843 255566799999999999999999999996 44555444449999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|+|.
T Consensus 425 ~~~s~~ 430 (510)
T 2oca_A 425 GVKSKI 430 (510)
T ss_dssp CCCSCC
T ss_pred CCCCHH
Confidence 999986
No 35
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=8.7e-10 Score=80.33 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=66.0
Q ss_pred cCCCceEEEEeecc--------ccc---CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 7 SEVHRPKTSSKYTT--------CEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~---~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.++.++|||+.... |.. .++.+..++|++++++|.++++.|+.. ... +|++|.++++|+|+..+++|
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g-~~~-vLVaT~~~~~GiDip~v~~V 363 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESG-ILVCTDVGARGMDFPNVHEV 363 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSE-EEEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC-CCe-EEEEcchhhcCCCcccCCEE
Confidence 56789999999872 333 388999999999999999999999984 344 47788999999999999999
Q ss_pred EEeCCCCCCC
Q psy16278 76 IFVDHDWSPM 85 (88)
Q Consensus 76 i~~d~~wnP~ 85 (88)
|++++++++.
T Consensus 364 I~~~~p~s~~ 373 (579)
T 3sqw_A 364 LQIGVPSELA 373 (579)
T ss_dssp EEESCCSSTT
T ss_pred EEcCCCCCHH
Confidence 9999999875
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.97 E-value=6.2e-11 Score=81.34 Aligned_cols=77 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
++.|+|||++.. .+...++.+..++|+++.++|.++++.|++.. .+ +|+++.++++|+|+.++++||+++
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-SR-ILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC-Cc-EEEECChhhcCCCcccCCEEEEeC
Confidence 567999999988 36667888999999999999999999998733 34 477889999999999999999999
Q ss_pred CCCCCCC
Q psy16278 80 HDWSPMK 86 (88)
Q Consensus 80 ~~wnP~~ 86 (88)
++|++..
T Consensus 336 ~p~s~~~ 342 (394)
T 1fuu_A 336 LPANKEN 342 (394)
T ss_dssp -------
T ss_pred CCCCHHH
Confidence 9998753
No 37
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.95 E-value=1.1e-09 Score=78.99 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=66.0
Q ss_pred cCCCceEEEEeecc--------ccc---CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 7 SEVHRPKTSSKYTT--------CEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~---~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
..+.++|||++..+ |.. .++++..++|++++++|.++++.|+.. ... +|++|.++++|+|+.++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g-~~~-vLvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD-ESG-ILVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC-SSE-EEEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC-CCC-EEEEcchhhcCCCcccCCEE
Confidence 56789999999772 332 389999999999999999999999984 344 57788999999999999999
Q ss_pred EEeCCCCCCC
Q psy16278 76 IFVDHDWSPM 85 (88)
Q Consensus 76 i~~d~~wnP~ 85 (88)
|++++++++.
T Consensus 415 I~~~~p~s~~ 424 (563)
T 3i5x_A 415 LQIGVPSELA 424 (563)
T ss_dssp EEESCCSSTT
T ss_pred EEECCCCchh
Confidence 9999999874
No 38
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.94 E-value=1.7e-09 Score=78.50 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=67.6
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||++.. .|...+++...++|+++.++|.++++.|+.+. ..| |++|.+.+.|+|+.+++.||++
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~v-lVaT~a~~~GiD~p~v~~VI~~ 311 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD-LQI-VVATVAFGMGINKPNVRFVVHF 311 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CSE-EEECTTSCTTTCCTTCCEEEES
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC-CeE-EEEechhhCCCCccCccEEEEE
Confidence 3678999999987 37777999999999999999999999999854 444 7788999999999999999999
Q ss_pred CCCCCCC
Q psy16278 79 DHDWSPM 85 (88)
Q Consensus 79 d~~wnP~ 85 (88)
++++++.
T Consensus 312 ~~p~s~~ 318 (523)
T 1oyw_A 312 DIPRNIE 318 (523)
T ss_dssp SCCSSHH
T ss_pred CCCCCHH
Confidence 9998763
No 39
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.86 E-value=1.2e-09 Score=79.67 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=62.9
Q ss_pred cCCCceEEEEeecc--------ccc--------CCCeEEEEECCCCHHHHHHHHHhccCCC-CCcEEEEeccccccccCC
Q psy16278 7 SEVHRPKTSSKYTT--------CEM--------PGVTYLRLDGSVVSTARHAIVTKFNSDP-TIDVLLLTTQVGGLGLNL 69 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~--------~~~~~~~~~G~~~~~~R~~~v~~F~~~~-~~~v~lls~~~~~~Gl~L 69 (88)
.++.|+|||++... |.. .+-....++|.++ ++|++++++|++.. ...++|++++++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 35689999999882 222 2233678999876 47999999999844 356789999999999999
Q ss_pred cCCCEEEEeCCCCCCC
Q psy16278 70 TGADTVIFVDHDWSPM 85 (88)
Q Consensus 70 ~~a~~vi~~d~~wnP~ 85 (88)
.++++||+++++|+|.
T Consensus 516 p~v~~Vi~~~~~~s~~ 531 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMS 531 (590)
T ss_dssp TTEEEEEEESCCCCHH
T ss_pred hheeEEEEEecCCChH
Confidence 9999999999999875
No 40
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.83 E-value=4.3e-09 Score=77.56 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=66.6
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
++.++|||+... .|...|+....++|++++++|.++++.|..+. .. +|++|.+.+.|+|+.+.+.||+++
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~-~~-VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE-IQ-VVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-SS-EEEECTTSCTTCCCSCEEEEEESS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC-Ce-EEEEechhhcCCCcccccEEEEeC
Confidence 678999999987 36777999999999999999999999999844 44 477889999999999999999999
Q ss_pred CCCCC
Q psy16278 80 HDWSP 84 (88)
Q Consensus 80 ~~wnP 84 (88)
+++++
T Consensus 344 ~p~s~ 348 (591)
T 2v1x_A 344 MSKSM 348 (591)
T ss_dssp CCSSH
T ss_pred CCCCH
Confidence 99875
No 41
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.77 E-value=7.5e-10 Score=78.65 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeC
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d 79 (88)
.+.++|||++.. .|...++.+..++|+++..+|.++++.|++. ... +|++|.++++|+|+.++++||++|
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~-iLv~T~~~~~GlDip~v~~VI~~d 409 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEK-VLVTTNVCARGIDVEQVSVVINFD 409 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEEccccccCCccccCCEEEEec
Confidence 456899999987 2666688899999999999999999999984 344 477889999999999999999999
Q ss_pred CCCCCC
Q psy16278 80 HDWSPM 85 (88)
Q Consensus 80 ~~wnP~ 85 (88)
++|++.
T Consensus 410 ~p~~~~ 415 (479)
T 3fmp_B 410 LPVDKD 415 (479)
T ss_dssp ------
T ss_pred CCCCCc
Confidence 999874
No 42
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.53 E-value=1.1e-08 Score=73.73 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=50.3
Q ss_pred cCCCceEEEEeecc--------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYTT--------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~~--------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.|+|||++..+ +...++.+..++|+++..+|.++++.|+... .+ +|+++.+++.|+|+.++++||++
T Consensus 355 ~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~-~~-VLVaT~~l~~GiDip~v~~VI~~ 432 (508)
T 3fho_A 355 LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT-SK-VLVTTNVIARGIDVSQVNLVVNY 432 (508)
T ss_dssp --CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS-CC-CCEECC-----CCCTTCCEEEC-
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC-Ce-EEEeCChhhcCCCccCCCEEEEE
Confidence 35679999999883 6667889999999999999999999998743 34 47788999999999999999999
Q ss_pred CCCCCC
Q psy16278 79 DHDWSP 84 (88)
Q Consensus 79 d~~wnP 84 (88)
+++|..
T Consensus 433 ~~p~~~ 438 (508)
T 3fho_A 433 DMPLDQ 438 (508)
T ss_dssp ---CC-
T ss_pred CCCCcc
Confidence 999653
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.47 E-value=1.2e-07 Score=74.33 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=62.9
Q ss_pred CCCceEEEEeecc--------cc--cCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 8 EVHRPKTSSKYTT--------CE--MPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~--~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.|.+++||++..+ |. ..+.++..++|+++..+|.+++++|++ +...| |++|.++++|+|+.++++||+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~-g~~~V-LVaT~v~e~GiDip~v~~VIi 888 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH-QRFNV-LVCTTIIETGIDIPTANTIII 888 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT-TSCCE-EEESSTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc-CCCcE-EEECCcceeeecccCCcEEEE
Confidence 5789999999872 32 337889999999999999999999997 44444 778899999999999999999
Q ss_pred eCCC-CCC
Q psy16278 78 VDHD-WSP 84 (88)
Q Consensus 78 ~d~~-wnP 84 (88)
++++ |++
T Consensus 889 ~~~~~~~l 896 (1151)
T 2eyq_A 889 ERADHFGL 896 (1151)
T ss_dssp TTTTSSCH
T ss_pred eCCCCCCH
Confidence 9884 664
No 44
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.44 E-value=1.8e-07 Score=69.79 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=62.6
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||+... .|...|++...++|++++.+|.++++.|+. +... +|++|.+.++|+|+..+++||++
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~-g~~~-VLvaT~~l~~GlDip~v~lVI~~ 514 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL-GHYD-CLVGINLLREGLDIPEVSLVAIL 514 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT-TSCS-EEEESCCCCTTCCCTTEEEEEET
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc-CCce-EEEccChhhcCccCCCCCEEEEe
Confidence 3678999999876 267778999999999999999999999987 4444 47788999999999999999999
Q ss_pred CC
Q psy16278 79 DH 80 (88)
Q Consensus 79 d~ 80 (88)
|.
T Consensus 515 d~ 516 (664)
T 1c4o_A 515 DA 516 (664)
T ss_dssp TT
T ss_pred CC
Confidence 98
No 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.43 E-value=2.3e-07 Score=69.16 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=62.5
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..|.++|||+... .|...|++...++|++++.+|.++++.|+. +... +|++|.+.++|+++..+++||++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~-g~~~-VLVaT~~l~~GlDip~v~lVi~~ 520 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRL-GKYD-VLVGINLLREGLDIPEVSLVAIL 520 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHH-TSCS-EEEESCCCSTTCCCTTEEEEEET
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhc-CCeE-EEEecchhhCCcccCCCCEEEEe
Confidence 3678999999876 266778999999999999999999999987 3344 47788999999999999999999
Q ss_pred CC
Q psy16278 79 DH 80 (88)
Q Consensus 79 d~ 80 (88)
|.
T Consensus 521 d~ 522 (661)
T 2d7d_A 521 DA 522 (661)
T ss_dssp TT
T ss_pred Cc
Confidence 98
No 46
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.43 E-value=1.9e-07 Score=65.00 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=57.4
Q ss_pred CCCceEEEEeec--------ccccCCCeEE-EEECCCCHHHHHHHHHhccCCCCCcEEEEe---ccccccccCCcC-CCE
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYL-RLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG-ADT 74 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~-~~~G~~~~~~R~~~v~~F~~~~~~~v~lls---~~~~~~Gl~L~~-a~~ 74 (88)
.+.++|||++.. .|...+++.. .++|. +|. ++.|++ +..+|++.+ |.++++|+|+.+ +++
T Consensus 251 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~-g~~~vLvat~s~T~~~~~GiDip~~v~~ 323 (414)
T 3oiy_A 251 FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKY 323 (414)
T ss_dssp HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT-TSCSEEEEECCTTCCCCCCCCCTTTCCE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC-CCCeEEEEecCcCchhhccCccccccCE
Confidence 468999999987 3666788887 88884 444 999998 456665553 899999999999 999
Q ss_pred EEEeCCC--CCCC
Q psy16278 75 VIFVDHD--WSPM 85 (88)
Q Consensus 75 vi~~d~~--wnP~ 85 (88)
||+++++ +++.
T Consensus 324 VI~~~~p~~~~~~ 336 (414)
T 3oiy_A 324 VIFWGTPSGPDVY 336 (414)
T ss_dssp EEEESCCTTTCHH
T ss_pred EEEECCCCCCCHH
Confidence 9999999 7763
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.22 E-value=2.3e-06 Score=66.58 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=48.3
Q ss_pred EEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE----eCC----CCCCC
Q psy16278 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF----VDH----DWSPM 85 (88)
Q Consensus 28 ~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~----~d~----~wnP~ 85 (88)
+..++|++++.+|..+++.|++ +.++| |++|.+++.|+|+.+.+.||. ||. +|+|.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~-G~ikV-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~ 472 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQE-GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 472 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHT-TCCSE-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHH
T ss_pred eeEECCCCCHHHHHHHHHHHhc-CCCcE-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHH
Confidence 6789999999999999999998 45555 677799999999999999998 887 66653
No 48
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.16 E-value=2.3e-06 Score=65.64 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc--------C
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------G 71 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~--------~ 71 (88)
.|.++|||+... .|...|++...++|+....+|..+.++|+.. . ++++|.++|+|+|+. +
T Consensus 431 ~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~-VlIATdmAgRG~DI~l~~~V~~~g 506 (844)
T 1tf5_A 431 TGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---A-VTIATNMAGRGTDIKLGEGVKELG 506 (844)
T ss_dssp HTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---C-EEEEETTSSTTCCCCCCTTSGGGT
T ss_pred cCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---e-EEEeCCccccCcCccccchhhhcC
Confidence 577899999988 3888999999999999888887666666542 3 477889999999999 7
Q ss_pred CCEEEEeCCCCCC
Q psy16278 72 ADTVIFVDHDWSP 84 (88)
Q Consensus 72 a~~vi~~d~~wnP 84 (88)
..|||.+|.|-++
T Consensus 507 gl~VIn~d~p~s~ 519 (844)
T 1tf5_A 507 GLAVVGTERHESR 519 (844)
T ss_dssp SEEEEESSCCSSH
T ss_pred CcEEEEecCCCCH
Confidence 7899999998664
No 49
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.16 E-value=2.8e-06 Score=63.72 Aligned_cols=70 Identities=24% Similarity=0.291 Sum_probs=56.9
Q ss_pred CceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCC-CCCcEEEEeccccccccCCcCCCEEEEeCC
Q psy16278 10 HRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSD-PTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80 (88)
Q Consensus 10 ~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~-~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~ 80 (88)
...+||+.-. .+...++.+..++|++++++|.+.++.|+.. +..+ +|++|.+++.|+|+ .+++||++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCc
Confidence 3446675544 2666789999999999999999999999982 2344 47788999999999 9999999998
Q ss_pred C
Q psy16278 81 D 81 (88)
Q Consensus 81 ~ 81 (88)
.
T Consensus 399 ~ 399 (677)
T 3rc3_A 399 I 399 (677)
T ss_dssp B
T ss_pred c
Confidence 3
No 50
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.15 E-value=9.4e-07 Score=69.23 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=47.8
Q ss_pred EEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCCCC
Q psy16278 28 YLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPM 85 (88)
Q Consensus 28 ~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wnP~ 85 (88)
+..++|++++.+|..+++.|+. +.++| |++|.+++.|||+.+.++||.++.+|++.
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~-G~ikV-LVAT~vla~GIDiP~v~~VI~~~~~~d~~ 562 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQE-GFLKV-LFATETFSIGLNMPAKTVVFTSVRKWDGQ 562 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHH-TCCCE-EEEESCCCSCCCC--CEEEESCSEEESSS
T ss_pred eeeecCCCCHHHHHHHHHHHhC-CCCeE-EEECcHHhcCCCCCCceEEEecCcccCcc
Confidence 6889999999999999999997 44555 67779999999999999999999888875
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.11 E-value=3.7e-07 Score=69.37 Aligned_cols=74 Identities=12% Similarity=0.219 Sum_probs=59.5
Q ss_pred cCCCceEEEEeec----------------cccc---CCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEecccccccc
Q psy16278 7 SEVHRPKTSSKYT----------------TCEM---PGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGL 67 (88)
Q Consensus 7 ~~g~k~liFs~~~----------------~l~~---~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl 67 (88)
..|.+++||+... .+.. .++.+..++|++++++|.++++.|++. ...| |++|.++++|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~I-LVaT~vie~GI 653 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDI-LVSTTVIEVGI 653 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-SSSB-CCCSSCCCSCS
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeE-EEECCCCCccc
Confidence 4578899998632 2333 577889999999999999999999973 4444 77889999999
Q ss_pred CCcCCCEEEEeCCCC
Q psy16278 68 NLTGADTVIFVDHDW 82 (88)
Q Consensus 68 ~L~~a~~vi~~d~~w 82 (88)
|+.++++||++++++
T Consensus 654 DiP~v~~VIi~d~~r 668 (780)
T 1gm5_A 654 DVPRANVMVIENPER 668 (780)
T ss_dssp CCTTCCEEEBCSCSS
T ss_pred cCCCCCEEEEeCCCC
Confidence 999999999999985
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.00 E-value=5.4e-06 Score=62.10 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=58.0
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||+... .|...+++...++|+ +|.++++.|++. ..+| |++|.++++|+|+. +++||++
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~V-LVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDF-VITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSE-EEECGGGGTTCCCC-CSEEEEC
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceE-EEECchhhcceeeC-CcEEEEC
Confidence 4678999999877 366779999999994 899999999984 4444 77889999999999 9999986
Q ss_pred CCCCCC
Q psy16278 79 DHDWSP 84 (88)
Q Consensus 79 d~~wnP 84 (88)
++.++|
T Consensus 481 g~~~~p 486 (673)
T 2wv9_A 481 RKSVKP 486 (673)
T ss_dssp CEECCE
T ss_pred CCcccc
Confidence 655544
No 53
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.97 E-value=1e-05 Score=61.64 Aligned_cols=73 Identities=11% Similarity=0.106 Sum_probs=58.2
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCc--------C
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLT--------G 71 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~--------~ 71 (88)
.|.++|||++.. .|...|++...++|+...++|.-+..+|+.. . ++++|..+|+|+|+. +
T Consensus 473 ~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~-VtVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 473 KGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---M-VTIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp HTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---C-EEEEETTTTTTCCCCCCTTTTTTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---e-EEEEcchhhCCcCccCCcchhhcC
Confidence 578999999988 3788899999999996555555555566542 2 578889999999997 6
Q ss_pred CCEEEEeCCCCCC
Q psy16278 72 ADTVIFVDHDWSP 84 (88)
Q Consensus 72 a~~vi~~d~~wnP 84 (88)
..|||.+++|-++
T Consensus 549 glhVInte~Pes~ 561 (822)
T 3jux_A 549 GLCIIGTERHESR 561 (822)
T ss_dssp SCEEEESSCCSSH
T ss_pred CCEEEecCCCCCH
Confidence 6799999998665
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=97.93 E-value=1.2e-05 Score=59.76 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=43.2
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+..++|+++.++|..+.+.|.+ +..+| |++|.+++.|+|+.+.++||.
T Consensus 314 ~v~~~h~~l~~~~r~~v~~~f~~-g~~~v-lvaT~~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 314 GVAYHHAGLSKALRDLIEEGFRQ-RKIKV-IVATPTLAAGVNLPARTVIIG 362 (715)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHT-TCSCE-EEECGGGGGSSCCCBSEEEEC
T ss_pred CEEEECCCCCHHHHHHHHHHHHc-CCCeE-EEEChHHhcccCCCceEEEEe
Confidence 47889999999999999999997 44555 777899999999999999988
No 55
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.87 E-value=1.7e-06 Score=61.45 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=45.7
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
..+.++|||++.. .|...+++...++| ++|.++++.|++. ...| |++|++.++|+|+. +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~v-LVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDF-ILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSE-EEESSSTTCCTTCC-CSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceE-EEECChhheeeccC-ceEEEe
Confidence 4578999999977 36667899999999 4788999999984 4444 77889999999999 999986
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.84 E-value=5.2e-06 Score=61.59 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=57.5
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
+.+.++|||++.. .|...+++...++|+ +|.++++.|++. ..+ +|++|+++++|+|+. +++||.+
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~-VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWD-FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCS-EEEECGGGGTTCCCC-CSEEEEC
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcE-EEEECcHHHcCcccC-ceEEEEC
Confidence 3567999999877 367779999999984 788999999874 344 477889999999995 9999887
Q ss_pred CCCCCC
Q psy16278 79 DHDWSP 84 (88)
Q Consensus 79 d~~wnP 84 (88)
.+.++|
T Consensus 426 g~~~~P 431 (618)
T 2whx_A 426 RRCLKP 431 (618)
T ss_dssp CEEEEE
T ss_pred cceecc
Confidence 776665
No 57
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.81 E-value=1.4e-05 Score=62.77 Aligned_cols=68 Identities=12% Similarity=-0.027 Sum_probs=55.1
Q ss_pred CCCceEEEEeec--------ccccCCCeEE-EEECCCCHHHHHHHHHhccCCCCCcEEEEe---ccccccccCCcC-CCE
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYL-RLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTG-ADT 74 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~-~~~G~~~~~~R~~~v~~F~~~~~~~v~lls---~~~~~~Gl~L~~-a~~ 74 (88)
.+.++|||++.. .|...|++.. .++| +|.+ ++.|++ +...|++.+ |+++++|+|+.+ .++
T Consensus 308 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~-G~~~VLVatas~TdvlarGIDip~~V~~ 380 (1104)
T 4ddu_A 308 FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV-GKINILIGVQAYYGKLTRGVDLPERIKY 380 (1104)
T ss_dssp HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH-TSCSEEEEETTTHHHHCCSCCCTTTCCE
T ss_pred cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC-CCCCEEEEecCCCCeeEecCcCCCCCCE
Confidence 458999999987 2666788887 8888 3555 999998 455665543 899999999999 999
Q ss_pred EEEeCCCC
Q psy16278 75 VIFVDHDW 82 (88)
Q Consensus 75 vi~~d~~w 82 (88)
||++|+|-
T Consensus 381 VI~~d~P~ 388 (1104)
T 4ddu_A 381 VIFWGTPS 388 (1104)
T ss_dssp EEEESCCE
T ss_pred EEEECCCC
Confidence 99999985
No 58
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.79 E-value=2.1e-05 Score=60.35 Aligned_cols=61 Identities=8% Similarity=0.070 Sum_probs=51.6
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcC
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTG 71 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~ 71 (88)
..|..+|||+... .|...|++...++|+....+|.-+.++|+.. . ++++|..+|+|+|+..
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIATNMAGRGTDIVL 507 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEEESCCSSCSCCCT
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecccccCCcCccC
Confidence 4678899999988 3888899999999998888887788888763 2 5778899999999986
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.77 E-value=2e-05 Score=56.02 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=53.9
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||++.. .|...++....++|++ ++++++.|++. ...| |++|.++++|+|+.. ++||.+
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~v-LVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDF-VVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSE-EEECGGGGSSCCCCC-SEEEEC
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceE-EEECCHHHhCcCCCC-CEEEEC
Confidence 3466999999987 3677789999999864 46899999873 4444 778899999999999 999988
Q ss_pred C
Q psy16278 79 D 79 (88)
Q Consensus 79 d 79 (88)
+
T Consensus 259 ~ 259 (451)
T 2jlq_A 259 R 259 (451)
T ss_dssp C
T ss_pred C
Confidence 7
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.73 E-value=1.5e-05 Score=59.35 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=43.1
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+..++|++++++|..+.+.|.+ +..+| |++|.+++.|+|+.+.+.||.
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~-g~~~v-lvaT~~l~~Gvdip~~~~VI~ 344 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRK-GIIKA-VVATPTLSAGINTPAFRVIIR 344 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHT-TSSCE-EEECSTTGGGCCCCBSEEEEC
T ss_pred CeeeecCCCCHHHHHHHHHHHHC-CCCeE-EEECcHhhccCCCCceEEEEc
Confidence 47889999999999999999998 44555 777899999999999999887
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.67 E-value=6.1e-06 Score=58.88 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=49.9
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
..+.++|||++.. .|...+++...++|+ +|.++++.|++. ..+| |++|.++++|+|+.. ++||.
T Consensus 188 ~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~i-LVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 188 EYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDF-VITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSE-EEESSCC---CCCSC-SEEEE
T ss_pred hcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceE-EEECChHHhCeecCC-CEEEE
Confidence 3467999999987 366678999999984 788899999874 4444 788899999999998 99998
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.66 E-value=1.8e-05 Score=59.96 Aligned_cols=72 Identities=14% Similarity=0.102 Sum_probs=59.2
Q ss_pred CCCceEEEEeecc--------cc-----------cCCCeEEEEECCCCHHHHHHHHHhccC----CCCCcEEEEeccccc
Q psy16278 8 EVHRPKTSSKYTT--------CE-----------MPGVTYLRLDGSVVSTARHAIVTKFNS----DPTIDVLLLTTQVGG 64 (88)
Q Consensus 8 ~g~k~liFs~~~~--------l~-----------~~~~~~~~~~G~~~~~~R~~~v~~F~~----~~~~~v~lls~~~~~ 64 (88)
++.++|||..-.+ |. ..++.+..++|++++++|.++++.|.. .+..+ +|++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHHH
Confidence 5779999998761 22 268889999999999999999999982 23333 578889999
Q ss_pred cccCCcCCCEEEEeCC
Q psy16278 65 LGLNLTGADTVIFVDH 80 (88)
Q Consensus 65 ~Gl~L~~a~~vi~~d~ 80 (88)
.|+|+.+.++||.++.
T Consensus 381 ~GidIp~v~~VId~g~ 396 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGF 396 (773)
T ss_dssp HTCCCTTEEEEEECSE
T ss_pred hCcCcCCeEEEEeCCC
Confidence 9999999999999765
No 63
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.66 E-value=1.5e-05 Score=59.27 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=42.6
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+..++|++++++|..+.+.|.+. ..+| |++|.+++.|+|+.+.+.||.
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g-~~~v-lvaT~~l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRG-NIKV-VVATPTLAAGVNLPARRVIVR 346 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTT-SCCE-EEECSTTTSSSCCCBSEEEEC
T ss_pred CeEEecCCCCHHHHHHHHHHHHCC-CCeE-EEECcHHhccCCCCceEEEEc
Confidence 356799999999999999999984 4455 778899999999999999988
No 64
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.63 E-value=4.5e-05 Score=59.50 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=50.8
Q ss_pred ccCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe---ccccccccCCcCC-C
Q psy16278 6 RSEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT---TQVGGLGLNLTGA-D 73 (88)
Q Consensus 6 ~~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls---~~~~~~Gl~L~~a-~ 73 (88)
+..+.++|||++.. .|... ++...++|++ .++++.|+. +..+|++.+ |.++++|||+.++ +
T Consensus 272 ~~~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~-G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 272 EKLGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVE-GEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp TTSCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHH-TSCSEEEEECC------CCSCCTTTCC
T ss_pred hhcCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHc-CCCcEEEEecCCCCeeEeccccCCccc
Confidence 34467999999977 25544 8899999987 478889987 455665554 8999999999996 9
Q ss_pred EEEEeCCC
Q psy16278 74 TVIFVDHD 81 (88)
Q Consensus 74 ~vi~~d~~ 81 (88)
+||+++++
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99999998
No 65
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.61 E-value=7.5e-05 Score=57.76 Aligned_cols=62 Identities=8% Similarity=0.038 Sum_probs=50.7
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCC
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA 72 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a 72 (88)
..|..+|||+... .|...|++...++|+....+|.-+.++|+.. . ++++|..+|+|+|+...
T Consensus 458 ~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATnmAgRGtDI~l~ 527 (922)
T 1nkt_A 458 AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG---G-VTVATNMAGRGTDIVLG 527 (922)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT---C-EEEEETTCSTTCCCCTT
T ss_pred hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecchhhcCccccCC
Confidence 3577899999988 3888899999999998777777777777753 3 47788999999999853
No 66
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.56 E-value=2.9e-05 Score=54.97 Aligned_cols=65 Identities=23% Similarity=0.204 Sum_probs=51.0
Q ss_pred cCCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEe
Q psy16278 7 SEVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78 (88)
Q Consensus 7 ~~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~ 78 (88)
..+.++|||++.. .|...+++...++|+ +|.++++.|++. ... +|++|.+.+.|+|+. ..+||.+
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~-vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWD-FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCS-EEEECGGGGTSCCCC-CSEEEEC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCe-EEEECchHHcCcccC-CcEEEec
Confidence 3466899999877 256668999999997 688999999874 344 478889999999997 7676543
No 67
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.49 E-value=9.2e-05 Score=57.59 Aligned_cols=52 Identities=29% Similarity=0.369 Sum_probs=42.7
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCC
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~ 81 (88)
.+..++|++++.+|..+++.|+. +..+| |++|.+++.|||+.+ .+||+++.+
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~-G~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSK-GFIKV-LFATETFAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHT-TCCSE-EEECTHHHHSCCCCC-SEEEESCSE
T ss_pred CeeeecCCCCHHHHHHHHHHHHC-CCCcE-EEEchHhhCCCCCCC-ceEEEeccc
Confidence 46889999999999999999998 44555 777899999999999 666664443
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.89 E-value=0.0011 Score=49.79 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=47.9
Q ss_pred CCCceEEEEeec--------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 8 EVHRPKTSSKYT--------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 8 ~g~k~liFs~~~--------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+.++|||++.. .|...+++...++|++++++ |.+... -+|++|+++++|||+. .++||.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~--~VLVATdVaerGIDId-V~~VI~ 462 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD--VVVVATDALMTGYTGD-FDSVID 462 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC--EEEEECTTHHHHCCCC-BSEEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC--cEEEECChHHccCCCC-CcEEEe
Confidence 567999999877 37778999999999999765 333232 3588889999999985 999994
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.44 E-value=0.08 Score=43.61 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=39.4
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVI 76 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi 76 (88)
.+..++|++++++|..+.+.|.+ +..+| |++|.+.+.|+|+.+-..||
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~-G~i~V-LvaT~tlA~GVnlPa~~VVI 1262 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSS-GAIQV-VVASRSLCWGMNVAAHLVII 1262 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHH-TSBCE-EEEEGGGSSSCCCCBSEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHC-CCCeE-EEEChHHHcCCCCCccEEEE
Confidence 36779999999999999999998 55666 56679999999998655554
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=92.76 E-value=0.064 Score=44.15 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=40.0
Q ss_pred eEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEE
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIF 77 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~ 77 (88)
.+...+|+++.++|..+-+.|++ +..+| |++|.+.+.|+||.+-..||.
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~-G~i~v-lvaTsTLa~GVNlPa~~vVI~ 428 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFAD-KHIQV-LVSTATLAWGVNLPAHTVIIK 428 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHT-TCCCE-EEECHHHHHHSCCCBSEEEEE
T ss_pred CEEEEcCCCCHHHHHHHHHHHHC-CCCeE-EEEcchhHhhCCCCCceEEEe
Confidence 35678999999999999999998 55566 677799999999976655553
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=90.10 E-value=0.23 Score=36.02 Aligned_cols=53 Identities=4% Similarity=0.181 Sum_probs=28.1
Q ss_pred EEEECCCCHHHHHHHHHhccCCCCCcEEE-EeccccccccCCcC----CCEEEEeCCCCCCC
Q psy16278 29 LRLDGSVVSTARHAIVTKFNSDPTIDVLL-LTTQVGGLGLNLTG----ADTVIFVDHDWSPM 85 (88)
Q Consensus 29 ~~~~G~~~~~~R~~~v~~F~~~~~~~v~l-ls~~~~~~Gl~L~~----a~~vi~~d~~wnP~ 85 (88)
..+.|.. .+|.++++.|+... .|++ +.+...++|+|+.+ +..||++.+|+-+.
T Consensus 409 ~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 409 VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp EEESTTT--CCHHHHHHHHHTSC--CEEEEEC---------------CEEEEEEESCCCCCT
T ss_pred eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceecceecCCCcccccEEEEECCCCCCC
Confidence 3445543 47889999998732 3433 26789999999997 78999999997443
No 72
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=86.03 E-value=2 Score=31.82 Aligned_cols=72 Identities=10% Similarity=0.092 Sum_probs=39.7
Q ss_pred CCCceEEEEeecc-------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe-ccccccccCCcC--CCEEEE
Q psy16278 8 EVHRPKTSSKYTT-------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT-TQVGGLGLNLTG--ADTVIF 77 (88)
Q Consensus 8 ~g~k~liFs~~~~-------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls-~~~~~~Gl~L~~--a~~vi~ 77 (88)
+|.-++.|+.|.. +. .+... ...+++..+|.+++++|+ + ...|++.. .....+|+|+.+ ...||+
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~-~~~vL~~v~~gsf~EGiD~~g~~l~~viI 522 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-R-DHGTIFAVSGGRLSEGINFPGNELEMIIL 522 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-T-SCCEEEEETTSCC--------CCCCEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-c-CCcEEEEEecCceeccccCCCCceEEEEE
Confidence 5556667777762 22 22222 333444678999999999 3 33444433 247889999985 689999
Q ss_pred eCCCCCC
Q psy16278 78 VDHDWSP 84 (88)
Q Consensus 78 ~d~~wnP 84 (88)
.-+|+-+
T Consensus 523 ~~lPfp~ 529 (620)
T 4a15_A 523 AGLPFPR 529 (620)
T ss_dssp SSCCCCC
T ss_pred EcCCCCC
Confidence 9888743
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=83.13 E-value=1.5 Score=34.58 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEEEEeCCCCC
Q psy16278 39 ARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWS 83 (88)
Q Consensus 39 ~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~vi~~d~~wn 83 (88)
.|.+++++|+++ ..++ |+.++...+|+|.... +++++|.+..
T Consensus 637 ~R~~i~~~Fk~g-~i~I-LIvvd~lltGfDiP~l-~tlylDkpl~ 678 (1038)
T 2w00_A 637 YYRDLAQRVKNQ-DIDL-LIVVGMFLTGFDAPTL-NTLFVDKNLR 678 (1038)
T ss_dssp HHHHHHHHHHTT-SSSE-EEESSTTSSSCCCTTE-EEEEEESCCC
T ss_pred HHHHHHHHHHcC-CCeE-EEEcchHHhCcCcccc-cEEEEccCCC
Confidence 488899999884 4555 6677999999999999 6777887754
No 74
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=59.99 E-value=13 Score=21.06 Aligned_cols=39 Identities=8% Similarity=-0.061 Sum_probs=28.3
Q ss_pred CCCceEEEEe-----ec---------ccccCCCeEEEEECCCCHHHHHHHHHh
Q psy16278 8 EVHRPKTSSK-----YT---------TCEMPGVTYLRLDGSVVSTARHAIVTK 46 (88)
Q Consensus 8 ~g~k~liFs~-----~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~ 46 (88)
..++|+||+. -. -|...|++|..++=...++.|..+.+.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~ 66 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAY 66 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHH
Confidence 4579999997 22 277789999998877777666665544
No 75
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=53.97 E-value=25 Score=19.21 Aligned_cols=38 Identities=8% Similarity=-0.092 Sum_probs=30.7
Q ss_pred CceEEEEeec---------ccccCCCeEEEEECCCCHHHHHHHHHhc
Q psy16278 10 HRPKTSSKYT---------TCEMPGVTYLRLDGSVVSTARHAIVTKF 47 (88)
Q Consensus 10 ~k~liFs~~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F 47 (88)
.++.|||.-. -|...|++|..++=+..++.|+...+.-
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 5788998855 2888899999999998888888776653
No 76
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=53.10 E-value=27 Score=19.35 Aligned_cols=41 Identities=10% Similarity=-0.070 Sum_probs=29.1
Q ss_pred CCCceEEEEee-----c---------ccccCCCeEEEEECCCCHHHHHHHHHhcc
Q psy16278 8 EVHRPKTSSKY-----T---------TCEMPGVTYLRLDGSVVSTARHAIVTKFN 48 (88)
Q Consensus 8 ~g~k~liFs~~-----~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~ 48 (88)
..++++||+.- . -|...+++|..++=...+..+..+.+...
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g 70 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN 70 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC
Confidence 45789999985 2 26777999998887666666666555433
No 77
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=44.16 E-value=39 Score=18.53 Aligned_cols=41 Identities=20% Similarity=0.017 Sum_probs=30.4
Q ss_pred CCceEEEEe-----ec---------ccccCCCeEEEEECCCCHHHHHHHHHhccC
Q psy16278 9 VHRPKTSSK-----YT---------TCEMPGVTYLRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 9 g~k~liFs~-----~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~ 49 (88)
.++++||+. -. -|...++.|..++-...+..+..+......
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 68 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW 68 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC
Confidence 468999998 22 267779999999988877777776655543
No 78
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=43.39 E-value=54 Score=23.52 Aligned_cols=71 Identities=7% Similarity=0.054 Sum_probs=42.9
Q ss_pred CCCceEEEEeeccc----ccCCCeEEEEECC-CCHHHHHHHHHhccCCCCCcEEEEe-ccccccccCCc-----CCCEEE
Q psy16278 8 EVHRPKTSSKYTTC----EMPGVTYLRLDGS-VVSTARHAIVTKFNSDPTIDVLLLT-TQVGGLGLNLT-----GADTVI 76 (88)
Q Consensus 8 ~g~k~liFs~~~~l----~~~~~~~~~~~G~-~~~~~R~~~v~~F~~~~~~~v~lls-~~~~~~Gl~L~-----~a~~vi 76 (88)
+|.-++.|+.|..+ ...+.+ +.+.|. ++ +.+.++.|+..++ .|++.. .....+|+|+. .+..||
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~~~~~-v~~q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~~EGiD~~d~~g~~l~~vi 467 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSRISLP-KYVESEDSS---VEDLYSAISANNK-VLIGSVGKGKLAEGIELRNNDRSLISDVV 467 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTTCCSS-EEECCSSCC---HHHHHHHTTSSSS-CEEEEESSCCSCCSSCCEETTEESEEEEE
T ss_pred CCCEEEEecCHHHHHHHHHhcCCc-EEEcCCCCC---HHHHHHHHHhcCC-eEEEEEecceecccccccccCCcceeEEE
Confidence 45556677777631 122333 233332 23 4667888864333 444443 26788999999 368999
Q ss_pred EeCCCCC
Q psy16278 77 FVDHDWS 83 (88)
Q Consensus 77 ~~d~~wn 83 (88)
+.-+|+-
T Consensus 468 I~~lPfp 474 (551)
T 3crv_A 468 IVGIPYP 474 (551)
T ss_dssp EESCCCC
T ss_pred EEcCCCC
Confidence 9988873
No 79
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=43.18 E-value=29 Score=20.33 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=25.5
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhcc
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFN 48 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~ 48 (88)
|...|++|..+|-...++.|.+.++...
T Consensus 26 L~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 26 LEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 7788999999999999999999999883
No 80
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=42.65 E-value=46 Score=25.43 Aligned_cols=73 Identities=12% Similarity=0.103 Sum_probs=50.1
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.|.+++|-+-... +...+++...++|+++..+|.+.+..... +.+.|++.+.......+.+.....|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~-g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN-GQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS-SCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhhhhhccCCceE
Confidence 3567777665541 23347899999999999999999888876 4456666665444455667777777
Q ss_pred EEeCCC
Q psy16278 76 IFVDHD 81 (88)
Q Consensus 76 i~~d~~ 81 (88)
|+=|-+
T Consensus 495 VIDEaH 500 (780)
T 1gm5_A 495 IIDEQH 500 (780)
T ss_dssp EEESCC
T ss_pred Eecccc
Confidence 764443
No 81
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=39.96 E-value=46 Score=18.10 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=30.6
Q ss_pred cCCCceEEEEeec---------ccccCCCeEEEEECCCCHHHHHHHHHhc
Q psy16278 7 SEVHRPKTSSKYT---------TCEMPGVTYLRLDGSVVSTARHAIVTKF 47 (88)
Q Consensus 7 ~~g~k~liFs~~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F 47 (88)
....+++||+.-. -|...+++|..++-...++.+.++.+..
T Consensus 13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~ 62 (99)
T 3qmx_A 13 AVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARA 62 (99)
T ss_dssp CCCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHT
T ss_pred cCCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 4567899998766 2667789999999888877776665544
No 82
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=39.57 E-value=55 Score=18.90 Aligned_cols=49 Identities=20% Similarity=0.068 Sum_probs=28.9
Q ss_pred CCceEEEEeec--------------ccccCCC-eEEEEECCCCHHHHHHHHHhccCCCCCcEEE
Q psy16278 9 VHRPKTSSKYT--------------TCEMPGV-TYLRLDGSVVSTARHAIVTKFNSDPTIDVLL 57 (88)
Q Consensus 9 g~k~liFs~~~--------------~l~~~~~-~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~l 57 (88)
.++|+||+.-. -|...++ +|..++=...++.|+.+...-....-..||+
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI 82 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeE
Confidence 36899998642 1556676 5778877666666655544433322233444
No 83
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=38.76 E-value=33 Score=21.20 Aligned_cols=59 Identities=7% Similarity=0.206 Sum_probs=37.7
Q ss_pred ccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEe--------cc-----ccccccCCcCCCEEEEeCCC
Q psy16278 22 EMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLT--------TQ-----VGGLGLNLTGADTVIFVDHD 81 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls--------~~-----~~~~Gl~L~~a~~vi~~d~~ 81 (88)
....+.+..+|.+-+. .-.+.++.|..++.++++-.. .. +-..|+......+++++|.+
T Consensus 27 ~~~~~eiivvDd~S~d-~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g~~i~~lD~D 98 (255)
T 1qg8_A 27 TFSDFELFIMDDNSNE-ETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDD 98 (255)
T ss_dssp SCCCEEEEEEECSCCH-HHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEETT
T ss_pred cCCceEEEEEECCCCc-hHHHHHHHHhhcCCEEEEecccccccccccccCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3446778888876554 445688888665554433222 01 22367777788999999987
No 84
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=33.79 E-value=59 Score=17.55 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=29.0
Q ss_pred CCceEEEEe-----ec---------ccccCCCeEEEEECCCCHHHHHHHHHhccC
Q psy16278 9 VHRPKTSSK-----YT---------TCEMPGVTYLRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 9 g~k~liFs~-----~~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~ 49 (88)
.++++||+. -. -|...+++|..++-...+..+..+...+..
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 457999987 22 256668889898888777777776666544
No 85
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=33.57 E-value=62 Score=18.33 Aligned_cols=40 Identities=15% Similarity=-0.072 Sum_probs=27.5
Q ss_pred CCceEEEEeec--------------ccccCCCe---EEEEECCCCHHHHHHHHHhcc
Q psy16278 9 VHRPKTSSKYT--------------TCEMPGVT---YLRLDGSVVSTARHAIVTKFN 48 (88)
Q Consensus 9 g~k~liFs~~~--------------~l~~~~~~---~~~~~G~~~~~~R~~~v~~F~ 48 (88)
.++|+||+.-+ -|...+++ |..++-...++.|..+.....
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg 71 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE 71 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC
Confidence 57899999952 15666887 888887766666666554433
No 86
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=31.04 E-value=21 Score=20.07 Aligned_cols=24 Identities=8% Similarity=0.436 Sum_probs=19.4
Q ss_pred eEEEEECCCCHHHHHHHHHhccCC
Q psy16278 27 TYLRLDGSVVSTARHAIVTKFNSD 50 (88)
Q Consensus 27 ~~~~~~G~~~~~~R~~~v~~F~~~ 50 (88)
++..+.++.++++|.++++.|+..
T Consensus 53 sfr~m~~~lt~~ek~elieeFn~G 76 (90)
T 1jr5_A 53 SFRKIVSELTQEDKKTLIDEFNEG 76 (90)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSSSS
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcc
Confidence 344566788999999999999973
No 87
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=30.29 E-value=85 Score=18.31 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=31.9
Q ss_pred CceEEEEee-----c---------ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEE
Q psy16278 10 HRPKTSSKY-----T---------TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 58 (88)
Q Consensus 10 ~k~liFs~~-----~---------~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~ll 58 (88)
.+++||+.- . -|...+++|..++=...++.|..+...... +.+-++++
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~-~tvP~VfI 96 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWV 96 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC-CCcCEEEE
Confidence 578999882 2 267789999999887777777666655443 34333343
No 88
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=27.81 E-value=88 Score=17.71 Aligned_cols=49 Identities=24% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCceEEEEeec--------------ccccCCCe-EEEEECCCCHHHHHHHHHhccCCCCCcEEEE
Q psy16278 9 VHRPKTSSKYT--------------TCEMPGVT-YLRLDGSVVSTARHAIVTKFNSDPTIDVLLL 58 (88)
Q Consensus 9 g~k~liFs~~~--------------~l~~~~~~-~~~~~G~~~~~~R~~~v~~F~~~~~~~v~ll 58 (88)
.++|+||+.-+ -|...+++ |..++=...++.|+.+...... ..+-++++
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~-~tvP~vfI 82 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW-PTIPQVYL 82 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTC-CSSCEEEE
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCC-CCcCeEEE
Confidence 36899999951 26777885 8888877777766665444332 33333343
No 89
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=27.70 E-value=86 Score=17.57 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 35 VVSTARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 35 ~~~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
.+.++|+.-++..+-.+.+.+.+.+...+|
T Consensus 54 ~s~~QR~~FL~tVklPkgv~~~~G~~~~~~ 83 (93)
T 2q79_A 54 DSEWQRDQFLSQVKIPKTITVSTGFMSIGG 83 (93)
T ss_dssp SSHHHHHHHHHHSCCCTTSEEEEEEC----
T ss_pred CCHHHHHHHHhcCCCCCCeEEEEEEEEecC
Confidence 468999999999999888988887776654
No 90
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=26.05 E-value=1.4e+02 Score=23.74 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=47.9
Q ss_pred CCCceEEEEeecc------------cccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCCEE
Q psy16278 8 EVHRPKTSSKYTT------------CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTV 75 (88)
Q Consensus 8 ~g~k~liFs~~~~------------l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~~v 75 (88)
.|.+++|-+-... +...+++...+.|..+..++.+.+..... ..+.|++.+.......+.+..-..+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~-g~~dIvV~T~~ll~~~~~~~~l~lv 729 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE-GKIDILIGTHKLLQSDVKFKDLGLL 729 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT-TCCSEEEECTHHHHSCCCCSSEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc-CCCCEEEECHHHHhCCccccccceE
Confidence 4567777766551 23346788899999999999988888876 4566777776666555666666665
Q ss_pred EE
Q psy16278 76 IF 77 (88)
Q Consensus 76 i~ 77 (88)
|+
T Consensus 730 Ii 731 (1151)
T 2eyq_A 730 IV 731 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 91
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=23.85 E-value=52 Score=21.79 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=33.8
Q ss_pred ccCCCeEEEEECCCC--HHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 22 EMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~--~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
.-.|+++..-.|+.. .-.=.++++.|.+|+.++++++....++
T Consensus 167 ~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~ 211 (288)
T 1oi7_A 167 AGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGG 211 (288)
T ss_dssp TTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSS
T ss_pred CCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 345777777778776 4577899999999999999888877654
No 92
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=23.81 E-value=52 Score=21.90 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=34.0
Q ss_pred ccCCCeEEEEECCCC--HHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 22 EMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~--~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
.-.|+++..-.|+.. .-.=.++++.|.+|+.++++++....++
T Consensus 174 ~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~ 218 (297)
T 2yv2_A 174 QGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGG 218 (297)
T ss_dssp TTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSS
T ss_pred cCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 445777777788876 4477899999999999999888877654
No 93
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=23.15 E-value=52 Score=21.86 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=33.5
Q ss_pred ccCCCeEEEEECCCC--HHHHHHHHHhccCCCCCcEEEEeccccc
Q psy16278 22 EMPGVTYLRLDGSVV--STARHAIVTKFNSDPTIDVLLLTTQVGG 64 (88)
Q Consensus 22 ~~~~~~~~~~~G~~~--~~~R~~~v~~F~~~~~~~v~lls~~~~~ 64 (88)
.-.|+++..-.|+.. .-.=.++++.|.+|+.++++++....++
T Consensus 173 ~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g 217 (294)
T 2yv1_A 173 AGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGG 217 (294)
T ss_dssp TTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSS
T ss_pred CCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC
Confidence 345777777778766 4467899999999999999888877654
No 94
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=22.38 E-value=1e+02 Score=16.72 Aligned_cols=56 Identities=0% Similarity=-0.045 Sum_probs=34.4
Q ss_pred ccCCCceEEEEeec----ccccCCCeEEEEECCCCH--HHHHHHHHhccC-CCCCcEEEEecc
Q psy16278 6 RSEVHRPKTSSKYT----TCEMPGVTYLRLDGSVVS--TARHAIVTKFNS-DPTIDVLLLTTQ 61 (88)
Q Consensus 6 ~~~g~k~liFs~~~----~l~~~~~~~~~~~G~~~~--~~R~~~v~~F~~-~~~~~v~lls~~ 61 (88)
+..|..+..++... .+....+..+.+|-.++. ..-.+.++..+. .+.+.+++++..
T Consensus 27 ~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 27 SPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp TTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred HHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcC
Confidence 34456666555443 244556777888877776 566666666654 456677777643
No 95
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=22.31 E-value=1.3e+02 Score=19.27 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=22.2
Q ss_pred HHHHHHHhccCCCCCcEEEEec----cccccccCCcC
Q psy16278 39 ARHAIVTKFNSDPTIDVLLLTT----QVGGLGLNLTG 71 (88)
Q Consensus 39 ~R~~~v~~F~~~~~~~v~lls~----~~~~~Gl~L~~ 71 (88)
+=.++++....|+ +++++++. +.-+.|.|+..
T Consensus 35 ~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~ 70 (261)
T 1ef8_A 35 DLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHE 70 (261)
T ss_dssp HHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTT
T ss_pred HHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHh
Confidence 3445666667788 99988875 34457899875
No 96
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=22.22 E-value=92 Score=15.99 Aligned_cols=39 Identities=8% Similarity=-0.068 Sum_probs=27.1
Q ss_pred ceEEEEee----c---------ccccCCCeEEEEECC-----CCHHHHHHHHHhccC
Q psy16278 11 RPKTSSKY----T---------TCEMPGVTYLRLDGS-----VVSTARHAIVTKFNS 49 (88)
Q Consensus 11 k~liFs~~----~---------~l~~~~~~~~~~~G~-----~~~~~R~~~v~~F~~ 49 (88)
+++||+.- . -|...+++|..++=. ..++.++++.+....
T Consensus 1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~ 57 (87)
T 1aba_A 1 MFKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGR 57 (87)
T ss_dssp CEEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTC
T ss_pred CEEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCC
Confidence 46777766 4 267778999888877 566777766665544
No 97
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=21.95 E-value=22 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=26.2
Q ss_pred CceEEEEeecc-cccCCCeEEEEECCCCHHHHHHHHHhccCC
Q psy16278 10 HRPKTSSKYTT-CEMPGVTYLRLDGSVVSTARHAIVTKFNSD 50 (88)
Q Consensus 10 ~k~liFs~~~~-l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~ 50 (88)
.-||||..|.. .+.+--+|..+||.- .-.+.++...+..|
T Consensus 80 divlifarw~~~iwaqispyyvvdgta-vftkeqiakaygsd 120 (155)
T 2ypj_A 80 DIVLIFARWDKDIWAQISPYYVVDGTA-VFTKEQIAKAYGSD 120 (155)
T ss_dssp CEEEEEEETTTTEEEEECCSEEETTEE-EEEHHHHHHHHTSS
T ss_pred cEEEEEeecChhhhhhcCceEEEcceE-EecHHHHHHHhCCC
Confidence 36889999983 555566788888852 23445566666553
No 98
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=21.95 E-value=22 Score=20.87 Aligned_cols=39 Identities=13% Similarity=0.167 Sum_probs=25.5
Q ss_pred CceEEEEeecc-cccCCCeEEEEECCCCHHHHHHHHHhccC
Q psy16278 10 HRPKTSSKYTT-CEMPGVTYLRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 10 ~k~liFs~~~~-l~~~~~~~~~~~G~~~~~~R~~~v~~F~~ 49 (88)
.-||||.+|.. ...+--+|..+||.- .-.+.++...+..
T Consensus 61 divlifarw~~~iwaqispyyvvdgta-vftkeqiakaygs 100 (144)
T 4ba6_A 61 DIVLIFARWDKDIWAQISPYYVVDGTA-VFTKEQIAKAYGS 100 (144)
T ss_dssp CEEEEEEETTTTEEEEECCSEEETTEE-EEEHHHHHHHHTC
T ss_pred cEEEEEeecChhhhhhcCceEEEcceE-EecHHHHHHHhCC
Confidence 36889999983 555566788888853 2334555666654
No 99
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=21.67 E-value=79 Score=20.65 Aligned_cols=31 Identities=23% Similarity=0.085 Sum_probs=21.2
Q ss_pred HHHHHhccCCCCCcEEEEec--------cccccccCCcC
Q psy16278 41 HAIVTKFNSDPTIDVLLLTT--------QVGGLGLNLTG 71 (88)
Q Consensus 41 ~~~v~~F~~~~~~~v~lls~--------~~~~~Gl~L~~ 71 (88)
.++++....|+++++++++. ++-+.|.|+..
T Consensus 43 ~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~ 81 (275)
T 4eml_A 43 YDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSV 81 (275)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-
T ss_pred HHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhh
Confidence 34555556788999988875 35567889865
No 100
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=21.50 E-value=33 Score=19.30 Aligned_cols=16 Identities=13% Similarity=0.418 Sum_probs=10.6
Q ss_pred CCEEEEeCCCCCCCCC
Q psy16278 72 ADTVIFVDHDWSPMKL 87 (88)
Q Consensus 72 a~~vi~~d~~wnP~~~ 87 (88)
+.--+-.+|+|+|..+
T Consensus 81 V~V~l~~~p~W~~~~~ 96 (108)
T 3lno_A 81 IEVNVVWNPPWSKERM 96 (108)
T ss_dssp EEEEECCSSCCCGGGS
T ss_pred EEEEEEecCCCChHHC
Confidence 3344557899998654
No 101
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=21.23 E-value=1e+02 Score=16.32 Aligned_cols=54 Identities=11% Similarity=0.073 Sum_probs=32.8
Q ss_pred cCCCceEEEEeec----ccccCCCeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEec
Q psy16278 7 SEVHRPKTSSKYT----TCEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTT 60 (88)
Q Consensus 7 ~~g~k~liFs~~~----~l~~~~~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~ 60 (88)
..|..+..++... .+.........+|-.++...-.+.++..+......+++++.
T Consensus 24 ~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 24 KEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEE
T ss_pred hCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEC
Confidence 3455555444333 24455677788888877766666776666545566666654
No 102
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=20.43 E-value=1.4e+02 Score=18.91 Aligned_cols=48 Identities=10% Similarity=-0.047 Sum_probs=27.5
Q ss_pred CeEEEEECCCCHHHHHHHHHhccCCCCCcEEEEeccccccccCCcCCC-EEEEeCCCCCC
Q psy16278 26 VTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGAD-TVIFVDHDWSP 84 (88)
Q Consensus 26 ~~~~~~~G~~~~~~R~~~v~~F~~~~~~~v~lls~~~~~~Gl~L~~a~-~vi~~d~~wnP 84 (88)
+-..++.|..+.+.-.+....+.. .....|+...... .+..||++|.|
T Consensus 140 vav~~F~G~~~~~~~~~~~~~L~~-----------~L~~~g~~~~~~~y~~A~Yd~P~t~ 188 (212)
T 3r8j_A 140 VFVRSFDGFSSAQKNQEQLLTLAS-----------ILREDGKVFDEKVYYTAGYNSPVKL 188 (212)
T ss_dssp EEEEEESSCCCHHHHHHHHHHHHH-----------HHHHTTCCBCSSCEEEEESSSSSCC
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHH-----------HHHhCCCccCCCcEEEEEeCCCCCc
Confidence 345568888876655444444433 1112234444444 67779999987
No 103
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.16 E-value=1.4e+02 Score=17.47 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=24.8
Q ss_pred cccCCCeEEEEECCCCHHHHHHHHHhccC
Q psy16278 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNS 49 (88)
Q Consensus 21 l~~~~~~~~~~~G~~~~~~R~~~v~~F~~ 49 (88)
...+|.+.+.+........|.+-+..|..
T Consensus 22 ikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 22 IKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp HHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 56779999999999888888888888875
No 104
>4eaz_C Transcription cofactor vestigial-like protein 1; immunoglobulin, beta sandwich, VGLL1; 2.80A {Mus musculus}
Probab=20.10 E-value=40 Score=17.27 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=8.8
Q ss_pred CceEEEEeec
Q psy16278 10 HRPKTSSKYT 19 (88)
Q Consensus 10 ~k~liFs~~~ 19 (88)
.++++|+.|.
T Consensus 20 srCVlFTyfq 29 (60)
T 4eaz_C 20 AGSVIFTYFE 29 (60)
T ss_dssp TTEEEEECSS
T ss_pred cceEEEEEec
Confidence 5899999998
Done!