RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16278
(88 letters)
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 90.1 bits (224), Expect = 5e-23
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTID-VLLLTTQVGGLGLNLTGADTVIFVD 79
C Y+RLDG++ R IV +FN+ + + + +L+++ GG GLNL GA+ ++ D
Sbjct: 436 CRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 495
Query: 80 HDWSP 84
DW+P
Sbjct: 496 PDWNP 500
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 82.1 bits (203), Expect = 3e-20
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNS-DPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79
+ G+ + RLDG+V S R + FNS D V LL+T+ GGLG+NL ADTV+ D
Sbjct: 592 LSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFD 651
Query: 80 HDWSP 84
DW+P
Sbjct: 652 SDWNP 656
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination,
hydrolase-recombination complex; 2.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19
Length = 271
Score = 69.9 bits (172), Expect = 3e-16
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
L G + R I++KF ++P++ ++L+ + GG G+NLT A+ VI D W+P
Sbjct: 137 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNP 196
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex,
hydrolase/DNA complex complex; 3.00A {Sulfolobus
solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Length = 500
Score = 68.3 bits (168), Expect = 2e-15
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 25 GVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
L G + R I++KF ++P++ ++L+ + GG G+NLT A+ VI D W+P
Sbjct: 366 NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNP 425
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 65.9 bits (160), Expect = 2e-14
Identities = 15/68 (22%), Positives = 26/68 (38%)
Query: 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDH 80
E G+ + R F + T +LL +++G G N A ++ D
Sbjct: 524 REREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDL 583
Query: 81 DWSPMKLE 88
++P LE
Sbjct: 584 PFNPDLLE 591
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain,
chromatin regulator, coiled coil, nucleus, repressor,
transcription; 2.20A {Saccharomyces cerevisiae} PDB:
3hgq_A
Length = 328
Score = 45.7 bits (108), Expect = 2e-07
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 21 CEMPGVTYLRLDGSVVSTARHAIVTKFNSDPTIDVLLLTTQ----VGGLGLNLTGADTVI 76
V R DG + +A +D + V L +++ + D +I
Sbjct: 145 LLGNKVHIKRYDGHSIKSAA------AANDFSCTVHLFSSEGINFTKYPIKSKARFDMLI 198
Query: 77 FVDHDWSP 84
+D
Sbjct: 199 CLDTTVDT 206
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 35.2 bits (80), Expect = 0.001
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 56 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKLE 88
+L+ T VG GL++ D V+F + S ++
Sbjct: 422 VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSI 454
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 30.3 bits (67), Expect = 0.049
Identities = 9/45 (20%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 43 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKL 87
I+ F + ++L+ T V G+++ + VI ++ + +K+
Sbjct: 452 ILDAFKASGDHNILI-ATSVADEGIDIAQCNLVILYEYVGNVIKM 495
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 30.2 bits (68), Expect = 0.058
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 69
>1y4c_A Maltose binding protein fused with designed helical protein; de
novo designed helical protein, maltose binding protein
fusion, de novo protein; HET: GLC; 1.90A {Escherichia
coli}
Length = 494
Score = 29.8 bits (67), Expect = 0.069
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane
space import AND...; disulfide bond, alpha helix,
fusion, sugar transport; HET: MAL; 3.00A {Escherichia
coli}
Length = 465
Score = 29.8 bits (67), Expect = 0.085
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding
protein, thermoph protein, periplasmic binding protein,
sugar binding protein; HET: MLR; 1.95A {Thermus
thermophilus}
Length = 386
Score = 29.7 bits (67), Expect = 0.091
Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 7/50 (14%)
Query: 42 AIVTKFNSDPTIDVLLLTTQVGGLGLNL-------TGADTVIFVDHDWSP 84
F V ++ + AD V+ V HDW
Sbjct: 19 EQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVG 68
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary
adenylate cyclase 1 receptor-short...; G-protein
coupled receptor; HET: MAL; 1.80A {Escherichia coli}
PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Length = 475
Score = 29.4 bits (66), Expect = 0.098
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 24 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 70
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human
parathyroid hormone receptor...; GPCR, extracellular
domain, PTHRP, PTH, PThr1, sugar transpo transport,
membrane protein; HET: MAL; 1.94A {Escherichia coli}
PDB: 3c4m_A* 3l2j_A*
Length = 539
Score = 29.5 bits (66), Expect = 0.099
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 24 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 70
>2vgq_A Maltose-binding periplasmic protein, mitochondrial
antiviral-signaling protein; immune system/transport,
IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia
coli}
Length = 477
Score = 29.4 bits (66), Expect = 0.10
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 37 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 83
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate
2-O-sulfotransferase 1; maltose binding protein,
fusion, heparan sulfate biosynthesis; HET: GLC A3P;
2.65A {Escherichia coli k-12}
Length = 658
Score = 29.6 bits (66), Expect = 0.11
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH;
alpha-amylase inhibitors (AAI), lipid transfer (LT) and
SEED (SS) protein family; HET: MLR; 2.71A {Escherichia
coli}
Length = 500
Score = 29.4 bits (66), Expect = 0.11
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 29.4 bits (66), Expect = 0.12
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein;
viral protein, viral membrane fusion, hairpin, chimera;
HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Length = 463
Score = 29.4 bits (66), Expect = 0.12
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 69
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 29.4 bits (66), Expect = 0.12
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein
chimera; MCSG, pcsep, MBP-fused target, structural
genomics; HET: MTT; 1.28A {Escherichia coli} PDB:
3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A*
3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A*
3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Length = 487
Score = 29.0 bits (65), Expect = 0.13
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 26 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 72
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic
protein; HIV, antiviral protein; 2.80A {Escherichia
coli}
Length = 471
Score = 29.0 bits (65), Expect = 0.16
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 42 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V G G D +IF HD
Sbjct: 36 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 82
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2;
deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A
{Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Length = 509
Score = 28.7 bits (64), Expect = 0.18
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 42 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 69
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA
associated factor 29; histone, tudor domain, histone
binding protei; HET: MLY MAL; 1.48A {Escherichia coli}
PDB: 3mp1_A* 3mp8_A*
Length = 522
Score = 28.7 bits (64), Expect = 0.20
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 42 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V G G D +IF HD
Sbjct: 23 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 69
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP
fusion, AHA1/BPI domain-like, super roll, sugar T
transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Length = 568
Score = 28.7 bits (64), Expect = 0.23
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3iot_A Maltose-binding protein, huntingtin fusion protein; HTT-EX1, HD,
sugar transport, transport, apoptosis, cytoplasm,
disease mutation; 3.50A {Escherichia coli k-12} PDB:
3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Length = 449
Score = 28.3 bits (63), Expect = 0.24
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 68
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP;
engineered binding protein, antibody mimic, synthetic
protein interface; 1.80A {Escherichia coli} PDB: 2obg_A
3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Length = 461
Score = 28.3 bits (63), Expect = 0.25
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 14/52 (26%)
Query: 42 AIVTKFNSDPTIDVLL---------LTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V + G G D +IF HD
Sbjct: 20 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAAT-G---DGPD-IIFWAHDRFG 66
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB:
3cjj_A 2l7u_A* 2e5e_A
Length = 581
Score = 28.4 bits (63), Expect = 0.29
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 42 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 68
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell
membrane protein, immunoglobulin-folding, inter
adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Length = 507
Score = 28.3 bits (63), Expect = 0.29
Identities = 12/53 (22%), Positives = 14/53 (26%), Gaps = 16/53 (30%)
Query: 42 AIVTKFNSDPTIDV----------LLLTTQVGGLGLNLTGADTVIFVDHDWSP 84
+ KF D I V G G D +IF HD
Sbjct: 22 EVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-----DGPD-IIFWAHDRFG 68
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 27.3 bits (61), Expect = 0.38
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 52 TIDVLLLTTQVGGLGLNLTGADTVIFV 78
+V L+ LGL+L+ + +
Sbjct: 3 KFNVDLMKKAGKELGLSLSPNEIGCTI 29
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 27.5 bits (61), Expect = 0.56
Identities = 7/39 (17%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 40 RHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78
R I+ F + ++ ++QV G+++ A+ + +
Sbjct: 383 REEILEGFRTGR-FRAIV-SSQVLDEGIDVPDANVGVIM 419
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 26.1 bits (58), Expect = 0.79
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 52 TIDVLLLTTQVGGLGLNLTGADTVIFV 78
+V L+ LGL+L+ + +
Sbjct: 9 KFNVDLMKKAGKELGLSLSPNEIGCTI 35
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 25.9 bits (57), Expect = 1.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 54 DVLLLTTQVGGLGLNLTGADTVIFV 78
+V+L Q G +GL L D IFV
Sbjct: 7 EVILCKDQDGKIGLRLKSIDNGIFV 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 26.0 bits (56), Expect = 2.1
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 43 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKL 87
++ F + ++L+ T V G+++ + VI ++ + +K+
Sbjct: 443 VLEAFRASGDNNILI-ATSVADEGIDIAECNLVILYEYVGNVIKM 486
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 25.6 bits (56), Expect = 2.2
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 71 GADTVIFVDHDW 82
G +F+ HDW
Sbjct: 325 GLSQAVFIGHDW 336
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 25.7 bits (55), Expect = 2.2
Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 43 IVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVDHDWSPMKL 87
++ F + +L+ T V G+++ + V+ ++ + K+
Sbjct: 685 VLDAFKTSKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKM 728
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 25.7 bits (55), Expect = 2.3
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 56 LLLTTQVGGLGLNLTGADTVIFVDHDWSPMKL 87
LL+ T V G+++ + V+ ++ + K+
Sbjct: 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 728
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 24.8 bits (54), Expect = 4.2
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 37 STARHAIVTKFNSDPTIDVLLLTTQVGGLGLNLTGADTVIFVD 79
R I+ K + + V+ + VG + A + +D
Sbjct: 183 GGERARIMKKVSLNDV--VVDMFAGVGPFSIACKNAKKIYAID 223
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A*
3kxl_A 3kxk_A
Length = 364
Score = 24.9 bits (55), Expect = 4.5
Identities = 3/15 (20%), Positives = 4/15 (26%), Gaps = 1/15 (6%)
Query: 70 TGADTVIFVDHDWSP 84
T+I P
Sbjct: 55 EEISTLII-FEQLKP 68
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 24.4 bits (52), Expect = 6.2
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 49 SDPTIDVLLLTTQVGGLGLNLTGA 72
++D L T GL LTGA
Sbjct: 311 GHASLDQLCQVTAAHGLHSKLTGA 334
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 23.5 bits (51), Expect = 8.3
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 49 SDPTIDVLLLTTQVGGLGLNLTGADTVIFV 78
SD I + + G + IFV
Sbjct: 3 SDMRISINQTPGKSLDFGFTIKWDIPGIFV 32
>3he1_A Major exported HCP3 protein; structural genomics, APC22128, HCPC,
secretion, virule 2, protein structure initiative;
2.10A {Pseudomonas aeruginosa}
Length = 195
Score = 24.0 bits (51), Expect = 8.5
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 1 MDSTSRSEVHRPKTSSKYTTCEMPGVTYLRLDGS 34
M S+ H + Y M Y+ + G+
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMATPAYMSITGT 34
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Length = 317
Score = 23.8 bits (52), Expect = 8.8
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 49 SDPTIDVLLLTTQVGGLGLNLTGA 72
S P +D ++ G G LTGA
Sbjct: 258 STPKLDRIVDIGNRFGFGAKLTGA 281
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.382
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,245,707
Number of extensions: 59174
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 45
Length of query: 88
Length of database: 6,701,793
Length adjustment: 56
Effective length of query: 32
Effective length of database: 5,138,217
Effective search space: 164422944
Effective search space used: 164422944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)