RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16278
         (88 letters)



>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
           PF2015 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 286

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 21  CEMPGVTYLRLDGSVVSTARH--------AIVTKFNSDPTIDVLLLTTQVGGLGLNLTGA 72
               G+   R  G                 I+ +F      +VL+  T VG  GL++   
Sbjct: 181 LVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EFNVLV-ATSVGEEGLDVPEV 238

Query: 73  DTVIFVDHDWSPM 85
           D V+F +   S +
Sbjct: 239 DLVVFYEPVPSAI 251


>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 85

 Score = 23.7 bits (51), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 55 VLLLTTQVGGLGLNLTGADTVIFV 78
          V+L   Q G +GL L   D  IFV
Sbjct: 6  VILCKDQDGKIGLRLKSIDNGIFV 29


>d1rj8a_ b.22.1.1 (A:) Ectodysplasin A, Eda-a1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 140

 Score = 22.2 bits (47), Expect = 9.8
 Identities = 6/29 (20%), Positives = 9/29 (31%)

Query: 2   DSTSRSEVHRPKTSSKYTTCEMPGVTYLR 30
               +         + Y TC   GV  L+
Sbjct: 78  KPFLQCTRSIETGKTNYNTCYTAGVCLLK 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 294,734
Number of extensions: 10072
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 4
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)