Query psy1628
Match_columns 114
No_of_seqs 131 out of 1275
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:21:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0160 GabT 4-aminobutyrate a 100.0 1.4E-30 3.1E-35 217.4 10.3 92 17-114 201-292 (447)
2 COG4992 ArgD Ornithine/acetylo 100.0 2.8E-31 6.1E-36 218.9 5.3 106 6-114 135-254 (404)
3 COG0161 BioA Adenosylmethionin 100.0 1.9E-29 4.2E-34 210.6 9.7 93 12-114 192-285 (449)
4 PRK06943 adenosylmethionine--8 100.0 2.3E-29 5E-34 209.0 8.5 83 23-114 209-292 (453)
5 PRK05965 hypothetical protein; 100.0 1.1E-28 2.4E-33 205.1 10.0 84 23-114 202-285 (459)
6 PRK08742 adenosylmethionine--8 100.0 9.3E-29 2E-33 206.7 8.8 84 22-114 223-307 (472)
7 PRK07482 hypothetical protein; 100.0 2.6E-28 5.6E-33 203.0 10.7 86 21-114 205-290 (461)
8 PRK06931 diaminobutyrate--2-ox 100.0 2.7E-28 5.8E-33 202.9 10.6 85 24-114 211-295 (459)
9 PRK06938 diaminobutyrate--2-ox 100.0 4.1E-28 8.8E-33 202.2 10.5 87 22-114 215-301 (464)
10 PRK07030 adenosylmethionine--8 100.0 2.7E-28 5.8E-33 203.4 8.7 83 23-114 202-285 (466)
11 PRK07678 aminotransferase; Val 99.9 4.2E-28 9.1E-33 201.1 9.5 83 24-114 201-283 (451)
12 KOG1401|consensus 99.9 8.1E-28 1.7E-32 198.4 8.9 101 5-114 153-276 (433)
13 PRK07481 hypothetical protein; 99.9 1.5E-27 3.3E-32 197.6 10.4 88 19-114 196-283 (449)
14 PF00202 Aminotran_3: Aminotra 99.9 2.2E-27 4.7E-32 190.1 9.7 72 40-114 176-247 (339)
15 PLN02760 4-aminobutyrate:pyruv 99.9 1.7E-27 3.7E-32 200.5 9.1 84 23-114 247-330 (504)
16 PRK07483 hypothetical protein; 99.9 2.4E-27 5.3E-32 196.3 9.3 84 23-114 186-270 (443)
17 PRK07480 putative aminotransfe 99.9 3.1E-27 6.6E-32 196.5 9.4 84 23-114 206-289 (456)
18 PRK12403 putative aminotransfe 99.9 4.2E-27 9.2E-32 195.6 9.1 84 23-114 209-292 (460)
19 PRK08297 L-lysine aminotransfe 99.9 5.2E-27 1.1E-31 194.3 9.3 83 23-114 213-295 (443)
20 PRK06916 adenosylmethionine--8 99.9 6.9E-27 1.5E-31 194.4 9.1 83 23-114 211-294 (460)
21 PRK06105 aminotransferase; Pro 99.9 1.3E-26 2.9E-31 192.7 10.4 85 22-114 204-288 (460)
22 PRK07036 hypothetical protein; 99.9 1.3E-26 2.8E-31 193.1 10.1 84 23-114 207-291 (466)
23 TIGR03372 putres_am_tran putre 99.9 1E-26 2.2E-31 193.3 9.4 104 5-114 168-294 (442)
24 PRK06173 adenosylmethionine--8 99.9 1.1E-26 2.4E-31 191.8 8.9 82 24-114 195-277 (429)
25 PRK06917 hypothetical protein; 99.9 1.2E-26 2.7E-31 192.3 9.0 84 23-114 186-270 (447)
26 PRK06062 hypothetical protein; 99.9 1.4E-26 3E-31 192.1 9.2 84 23-114 201-284 (451)
27 PRK11522 putrescine--2-oxoglut 99.9 1.6E-26 3.4E-31 192.6 9.5 104 5-114 175-301 (459)
28 PLN02974 adenosylmethionine-8- 99.9 2.7E-26 5.9E-31 202.7 10.5 90 19-114 563-655 (817)
29 TIGR00699 GABAtrns_euk 4-amino 99.9 2.7E-26 5.9E-31 192.1 9.3 82 24-114 240-323 (464)
30 PRK05639 4-aminobutyrate amino 99.9 4.4E-26 9.5E-31 189.7 10.4 86 23-114 207-292 (457)
31 PRK06082 4-aminobutyrate amino 99.9 5E-26 1.1E-30 189.3 9.5 81 23-114 218-298 (459)
32 TIGR02407 ectoine_ectB diamino 99.9 9.7E-26 2.1E-30 184.6 10.1 85 24-114 180-264 (412)
33 TIGR00709 dat 2,4-diaminobutyr 99.9 1.2E-25 2.6E-30 185.7 10.6 85 24-114 192-276 (442)
34 TIGR03251 LAT_fam L-lysine 6-t 99.9 7.9E-26 1.7E-30 186.2 9.4 82 24-114 207-288 (431)
35 PRK13360 omega amino acid--pyr 99.9 1.9E-25 4.1E-30 185.0 10.2 85 22-114 201-285 (442)
36 PRK06058 4-aminobutyrate amino 99.9 1.5E-25 3.3E-30 184.9 9.5 72 40-114 218-289 (443)
37 PRK05630 adenosylmethionine--8 99.9 1.7E-25 3.7E-30 184.4 9.5 72 40-114 199-271 (422)
38 PRK09264 diaminobutyrate--2-ox 99.9 2.9E-25 6.4E-30 182.2 10.0 86 23-114 183-268 (425)
39 PRK09221 beta alanine--pyruvat 99.9 3.6E-25 7.8E-30 183.5 10.1 84 23-114 205-288 (445)
40 PRK06148 hypothetical protein; 99.9 4.5E-25 9.8E-30 198.0 10.1 87 23-114 769-855 (1013)
41 KOG1402|consensus 99.9 1.8E-25 3.9E-30 181.9 6.6 80 24-114 198-277 (427)
42 KOG1404|consensus 99.9 1.3E-25 2.7E-30 185.1 5.1 88 19-114 195-282 (442)
43 PRK07986 adenosylmethionine--8 99.9 1E-24 2.2E-29 180.3 8.7 82 24-114 193-275 (428)
44 PRK06541 hypothetical protein; 99.9 2.3E-24 5E-29 179.4 9.6 84 23-114 208-291 (460)
45 PRK08593 4-aminobutyrate amino 99.9 4.4E-24 9.6E-29 176.8 10.2 86 22-114 192-277 (445)
46 PRK04013 argD acetylornithine/ 99.9 2E-24 4.4E-29 175.5 8.1 71 40-114 161-231 (364)
47 PRK06149 hypothetical protein; 99.9 3.6E-24 7.9E-29 191.3 9.8 73 40-114 743-815 (972)
48 PRK12389 glutamate-1-semialdeh 99.9 4.2E-24 9E-29 175.7 9.1 82 23-114 188-269 (428)
49 PRK03715 argD acetylornithine 99.9 3.5E-24 7.5E-29 174.8 8.4 72 40-114 178-249 (395)
50 PRK08117 4-aminobutyrate amino 99.9 8.7E-24 1.9E-28 173.3 10.0 84 24-114 194-277 (433)
51 TIGR00700 GABAtrnsam 4-aminobu 99.9 1.2E-23 2.5E-28 172.2 10.3 84 24-114 184-267 (420)
52 PRK05964 adenosylmethionine--8 99.9 9.7E-24 2.1E-28 172.6 9.5 84 22-114 186-270 (423)
53 PLN02482 glutamate-1-semialdeh 99.9 2.1E-23 4.6E-28 174.8 9.4 82 23-114 234-315 (474)
54 PRK06777 4-aminobutyrate amino 99.9 3.4E-23 7.4E-28 170.0 10.2 84 24-114 185-268 (421)
55 COG0001 HemL Glutamate-1-semia 99.9 5.2E-24 1.1E-28 177.1 5.1 100 4-113 169-268 (432)
56 TIGR00508 bioA adenosylmethion 99.9 3.8E-23 8.2E-28 170.4 9.3 82 24-114 196-278 (427)
57 PRK00615 glutamate-1-semialdeh 99.9 4.8E-23 1E-27 170.7 9.4 82 23-114 189-270 (433)
58 PRK09792 4-aminobutyrate trans 99.9 6.7E-23 1.5E-27 168.3 9.9 85 23-114 184-268 (421)
59 PRK05769 4-aminobutyrate amino 99.9 1E-22 2.2E-27 168.5 10.4 86 22-114 205-291 (441)
60 TIGR03246 arg_catab_astC succi 99.9 8.5E-23 1.8E-27 165.6 8.7 72 40-114 178-249 (397)
61 PRK07495 4-aminobutyrate amino 99.9 1.3E-22 2.7E-27 167.3 8.9 84 24-114 185-268 (425)
62 PLN00144 acetylornithine trans 99.9 1.6E-22 3.5E-27 164.1 7.9 99 5-114 116-237 (382)
63 PLN02624 ornithine-delta-amino 99.9 3.5E-22 7.7E-27 166.6 9.7 100 6-114 172-294 (474)
64 PRK06918 4-aminobutyrate amino 99.9 6.1E-22 1.3E-26 163.7 10.2 72 40-114 218-289 (451)
65 PRK12381 bifunctional succinyl 99.9 7.1E-22 1.5E-26 160.6 8.3 72 40-114 182-253 (406)
66 KOG1405|consensus 99.8 2E-21 4.4E-26 159.7 7.9 88 23-114 256-343 (484)
67 PRK08360 4-aminobutyrate amino 99.8 5.4E-21 1.2E-25 158.5 10.5 85 23-114 190-274 (443)
68 PRK07046 aminotransferase; Val 99.8 3.6E-21 7.8E-26 160.2 8.2 70 40-114 217-286 (453)
69 PRK04612 argD acetylornithine 99.8 6.6E-21 1.4E-25 156.4 8.8 100 4-114 135-257 (408)
70 TIGR01885 Orn_aminotrans ornit 99.8 1.6E-20 3.5E-25 151.7 9.6 100 6-114 134-256 (401)
71 PRK00062 glutamate-1-semialdeh 99.8 4.2E-20 9.1E-25 151.6 6.9 82 23-114 185-266 (426)
72 TIGR00713 hemL glutamate-1-sem 99.8 7.4E-20 1.6E-24 148.7 7.4 82 23-114 183-264 (423)
73 KOG1403|consensus 99.8 2.5E-20 5.4E-25 151.3 1.5 109 1-114 165-280 (452)
74 PRK03244 argD acetylornithine 99.8 3.1E-19 6.6E-24 143.5 7.7 72 40-114 182-253 (398)
75 PRK05093 argD bifunctional N-s 99.8 8.9E-19 1.9E-23 141.8 9.1 72 40-114 183-254 (403)
76 PRK06209 glutamate-1-semialdeh 99.8 1.1E-18 2.3E-23 144.0 8.8 78 23-114 175-252 (431)
77 PRK02936 argD acetylornithine 99.8 1.1E-18 2.5E-23 139.1 8.5 72 40-114 166-237 (377)
78 PRK04073 rocD ornithine--oxo-a 99.8 8.9E-19 1.9E-23 141.5 8.0 72 40-114 185-256 (396)
79 PRK01278 argD acetylornithine 99.8 1.2E-18 2.6E-23 139.9 8.2 72 40-114 174-245 (389)
80 PRK08088 4-aminobutyrate amino 99.8 2.5E-18 5.4E-23 140.8 9.8 84 24-114 186-269 (425)
81 PRK00854 rocD ornithine--oxo-a 99.7 6.6E-18 1.4E-22 135.9 8.3 72 40-114 186-257 (401)
82 PTZ00125 ornithine aminotransf 99.7 9.4E-18 2E-22 134.5 8.7 72 40-114 177-248 (400)
83 PRK04260 acetylornithine amino 99.7 2.6E-17 5.7E-22 131.8 7.8 72 40-114 164-235 (375)
84 cd00610 OAT_like Acetyl ornith 99.7 1.7E-16 3.7E-21 126.9 9.4 83 23-114 179-261 (413)
85 PRK02627 acetylornithine amino 99.7 1E-16 2.2E-21 128.0 7.7 72 40-114 181-252 (396)
86 TIGR00707 argD acetylornithine 99.4 2.5E-12 5.4E-17 102.0 8.7 72 40-114 169-240 (379)
87 PRK07505 hypothetical protein; 99.1 1.4E-10 3.1E-15 93.8 7.5 67 40-114 179-252 (402)
88 PLN03227 serine palmitoyltrans 99.1 2E-10 4.3E-15 93.7 7.6 66 41-114 138-209 (392)
89 PLN02822 serine palmitoyltrans 99.1 5.1E-10 1.1E-14 94.0 7.8 64 43-114 247-317 (481)
90 PRK09064 5-aminolevulinate syn 99.0 1.8E-09 3.8E-14 87.2 8.4 79 23-114 165-249 (407)
91 PRK13393 5-aminolevulinate syn 98.9 6.7E-09 1.4E-13 84.2 8.4 78 24-114 165-248 (406)
92 TIGR01821 5aminolev_synth 5-am 98.8 2.1E-08 4.4E-13 81.0 8.2 78 24-114 165-248 (402)
93 PLN02955 8-amino-7-oxononanoat 98.6 1.1E-07 2.4E-12 80.7 8.2 77 24-114 238-320 (476)
94 PRK07179 hypothetical protein; 98.6 2.3E-07 4.9E-12 75.2 8.2 65 41-113 181-251 (407)
95 PRK05937 8-amino-7-oxononanoat 98.5 6E-07 1.3E-11 72.1 8.1 83 23-114 128-213 (370)
96 PRK13392 5-aminolevulinate syn 98.4 1.3E-06 2.9E-11 70.8 8.5 80 24-114 166-249 (410)
97 PRK05958 8-amino-7-oxononanoat 98.4 1.9E-06 4.2E-11 67.9 8.2 80 23-114 156-240 (385)
98 TIGR01825 gly_Cac_T_rel pyrido 98.3 3.1E-06 6.7E-11 67.3 8.4 78 24-114 151-234 (385)
99 cd01494 AAT_I Aspartate aminot 98.0 2.4E-05 5.1E-10 54.0 6.4 64 40-112 91-154 (170)
100 PRK06939 2-amino-3-ketobutyrat 97.9 5.9E-05 1.3E-09 59.8 7.7 67 40-114 173-245 (397)
101 cd00609 AAT_like Aspartate ami 97.9 3.2E-05 6.9E-10 59.3 6.0 52 40-92 131-182 (350)
102 TIGR00858 bioF 8-amino-7-oxono 97.8 0.00013 2.8E-09 56.8 8.3 80 23-114 133-218 (360)
103 TIGR01822 2am3keto_CoA 2-amino 97.8 0.00013 2.9E-09 58.2 8.3 82 23-113 155-240 (393)
104 cd00613 GDC-P Glycine cleavage 97.7 7.8E-05 1.7E-09 59.5 6.2 43 40-86 158-200 (398)
105 PLN02721 threonine aldolase 97.6 0.00012 2.6E-09 57.2 5.9 46 40-85 136-181 (353)
106 PRK03317 histidinol-phosphate 97.6 0.00019 4.1E-09 57.3 6.9 64 44-114 163-229 (368)
107 PLN02483 serine palmitoyltrans 97.6 0.00018 3.8E-09 60.8 6.6 65 42-114 241-312 (489)
108 cd06454 KBL_like KBL_like; thi 97.5 0.00087 1.9E-08 52.2 8.7 54 24-85 119-172 (349)
109 PRK13238 tnaA tryptophanase/L- 97.0 0.0028 6E-08 53.4 7.4 58 23-85 164-221 (460)
110 TIGR01814 kynureninase kynuren 97.0 0.0029 6.4E-08 51.3 7.2 43 40-86 170-212 (406)
111 cd00615 Orn_deC_like Ornithine 96.7 0.0092 2E-07 46.6 7.4 52 22-86 142-194 (294)
112 TIGR02006 IscS cysteine desulf 96.6 0.006 1.3E-07 49.5 6.4 61 40-112 141-201 (402)
113 PRK05994 O-acetylhomoserine am 96.6 0.0061 1.3E-07 50.7 6.5 59 40-111 147-205 (427)
114 TIGR03402 FeS_nifS cysteine de 96.5 0.007 1.5E-07 48.3 6.1 61 40-112 135-195 (379)
115 PRK07682 hypothetical protein; 96.5 0.012 2.6E-07 47.1 7.4 52 40-92 153-204 (378)
116 PRK06225 aspartate aminotransf 96.5 0.0062 1.3E-07 48.8 5.5 47 40-88 156-203 (380)
117 COG0156 BioF 7-keto-8-aminopel 96.5 0.017 3.7E-07 48.2 8.3 81 23-114 156-243 (388)
118 cd00616 AHBA_syn 3-amino-5-hyd 96.5 0.0083 1.8E-07 46.8 6.0 39 40-85 105-143 (352)
119 cd06502 TA_like Low-specificit 96.5 0.0091 2E-07 46.3 6.2 42 41-84 127-168 (338)
120 COG1168 MalY Bifunctional PLP- 96.4 0.019 4.1E-07 48.1 8.1 67 11-91 140-207 (388)
121 PRK08960 hypothetical protein; 96.4 0.019 4.2E-07 46.1 7.9 64 41-111 166-229 (387)
122 KOG0259|consensus 96.3 0.025 5.3E-07 47.9 8.1 60 23-92 190-249 (447)
123 PRK06084 O-acetylhomoserine am 96.3 0.015 3.4E-07 48.4 6.9 42 40-85 142-183 (425)
124 TIGR03301 PhnW-AepZ 2-aminoeth 96.2 0.017 3.7E-07 44.9 6.5 30 54-88 138-167 (355)
125 TIGR01325 O_suc_HS_sulf O-succ 96.2 0.015 3.2E-07 47.4 6.3 43 40-86 138-180 (380)
126 PRK13520 L-tyrosine decarboxyl 96.2 0.012 2.5E-07 46.4 5.5 31 53-87 163-193 (371)
127 TIGR01977 am_tr_V_EF2568 cyste 96.1 0.021 4.6E-07 45.1 6.7 42 40-85 136-177 (376)
128 TIGR01326 OAH_OAS_sulfhy OAH/O 96.1 0.015 3.3E-07 48.0 6.0 42 40-85 141-182 (418)
129 PRK07777 aminotransferase; Val 96.0 0.026 5.7E-07 45.3 6.6 48 40-88 158-205 (387)
130 PRK06108 aspartate aminotransf 96.0 0.016 3.4E-07 46.1 5.2 48 41-89 158-205 (382)
131 TIGR03235 DNA_S_dndA cysteine 95.9 0.025 5.5E-07 44.6 6.4 61 40-112 137-197 (353)
132 TIGR01140 L_thr_O3P_dcar L-thr 95.9 0.034 7.4E-07 43.9 6.9 45 43-89 128-172 (330)
133 PRK09331 Sep-tRNA:Cys-tRNA syn 95.9 0.052 1.1E-06 43.9 8.0 42 40-85 157-198 (387)
134 cd00614 CGS_like CGS_like: Cys 95.8 0.027 5.9E-07 45.4 6.1 42 40-85 124-165 (369)
135 cd00617 Tnase_like Tryptophana 95.8 0.028 6.2E-07 47.2 6.3 59 22-85 138-196 (431)
136 PLN02651 cysteine desulfurase 95.8 0.031 6.8E-07 44.6 6.3 42 40-85 137-178 (364)
137 PRK15407 lipopolysaccharide bi 95.8 0.022 4.8E-07 47.6 5.6 39 40-85 158-196 (438)
138 PF00155 Aminotran_1_2: Aminot 95.7 0.1 2.2E-06 40.9 8.9 62 23-90 133-196 (363)
139 PRK14012 cysteine desulfurase; 95.7 0.034 7.5E-07 45.0 6.3 61 40-112 143-203 (404)
140 TIGR01976 am_tr_V_VC1184 cyste 95.6 0.048 1E-06 43.6 6.8 42 40-85 155-196 (397)
141 PLN00145 tyrosine/nicotianamin 95.6 0.089 1.9E-06 43.5 8.4 47 40-88 190-236 (430)
142 TIGR02326 transamin_PhnW 2-ami 95.5 0.068 1.5E-06 42.4 7.3 47 53-111 141-187 (363)
143 PLN02607 1-aminocyclopropane-1 95.5 0.048 1E-06 45.6 6.7 47 40-87 199-245 (447)
144 PF01212 Beta_elim_lyase: Beta 95.5 0.06 1.3E-06 42.9 7.0 58 22-82 108-165 (290)
145 cd06453 SufS_like Cysteine des 95.4 0.064 1.4E-06 42.4 6.7 61 40-112 138-198 (373)
146 TIGR03403 nifS_epsilon cystein 95.2 0.058 1.3E-06 43.1 6.1 41 41-85 140-180 (382)
147 TIGR03392 FeS_syn_CsdA cystein 95.1 0.062 1.3E-06 43.2 6.0 60 41-112 157-216 (398)
148 PRK07550 hypothetical protein; 95.1 0.071 1.5E-06 42.8 6.2 43 43-87 166-208 (386)
149 PRK08574 cystathionine gamma-s 95.0 0.094 2E-06 43.0 6.7 41 41-85 137-177 (385)
150 PRK07504 O-succinylhomoserine 94.9 0.093 2E-06 43.2 6.7 42 40-85 149-190 (398)
151 PRK08175 aminotransferase; Val 94.9 0.1 2.2E-06 42.2 6.7 58 23-87 152-209 (395)
152 PRK07324 transaminase; Validat 94.9 0.17 3.8E-06 40.7 8.1 50 41-91 153-202 (373)
153 PRK07309 aromatic amino acid a 94.9 0.11 2.3E-06 42.1 6.8 50 40-91 165-215 (391)
154 PRK08636 aspartate aminotransf 94.9 0.22 4.7E-06 40.4 8.6 62 20-88 160-221 (403)
155 PRK05764 aspartate aminotransf 94.9 0.15 3.2E-06 40.8 7.5 47 41-88 164-210 (393)
156 TIGR02617 tnaA_trp_ase tryptop 94.8 0.066 1.4E-06 45.9 5.6 55 23-82 170-224 (467)
157 PRK10874 cysteine sulfinate de 94.8 0.1 2.2E-06 42.0 6.5 60 41-112 160-219 (401)
158 PRK05939 hypothetical protein; 94.8 0.084 1.8E-06 43.6 5.9 42 40-85 130-171 (397)
159 PRK06176 cystathionine gamma-s 94.7 0.1 2.3E-06 42.7 6.4 43 40-86 133-175 (380)
160 PRK09257 aromatic amino acid a 94.7 0.12 2.6E-06 41.8 6.7 46 43-88 173-218 (396)
161 cd06451 AGAT_like Alanine-glyo 94.7 0.078 1.7E-06 41.6 5.5 43 41-88 124-166 (356)
162 PRK07568 aspartate aminotransf 94.7 0.13 2.9E-06 41.1 6.9 49 41-91 162-211 (397)
163 PLN00143 tyrosine/nicotianamin 94.7 0.22 4.8E-06 40.7 8.2 50 40-91 170-219 (409)
164 TIGR01324 cysta_beta_ly_B cyst 94.5 0.13 2.9E-06 42.1 6.6 42 40-85 134-175 (377)
165 PLN02231 alanine transaminase 94.5 0.16 3.5E-06 43.7 7.2 47 41-89 271-318 (534)
166 TIGR01265 tyr_nico_aTase tyros 94.5 0.29 6.4E-06 39.7 8.4 47 43-91 172-218 (403)
167 PLN02656 tyrosine transaminase 94.4 0.29 6.3E-06 39.9 8.3 50 40-91 169-218 (409)
168 PLN00175 aminotransferase fami 94.4 0.23 5E-06 40.7 7.8 47 41-88 187-233 (413)
169 PRK09295 bifunctional cysteine 94.3 0.14 3E-06 41.5 6.2 60 41-112 164-223 (406)
170 PRK07337 aminotransferase; Val 94.3 0.35 7.5E-06 38.8 8.4 49 41-91 163-212 (388)
171 PRK05613 O-acetylhomoserine am 94.3 0.17 3.7E-06 42.5 6.9 42 40-85 154-195 (437)
172 PRK07810 O-succinylhomoserine 94.3 0.16 3.4E-06 42.0 6.5 42 40-85 154-195 (403)
173 PTZ00376 aspartate aminotransf 94.3 0.17 3.6E-06 41.2 6.5 46 44-89 178-223 (404)
174 TIGR01329 cysta_beta_ly_E cyst 94.3 0.17 3.6E-06 41.3 6.5 42 40-85 130-171 (378)
175 PRK06855 aminotransferase; Val 94.2 0.18 3.8E-06 41.7 6.7 48 42-91 173-220 (433)
176 PLN02187 rooty/superroot1 94.2 0.28 6.2E-06 41.1 8.0 50 40-91 204-253 (462)
177 TIGR03812 tyr_de_CO2_Arch tyro 94.2 0.17 3.6E-06 39.9 6.3 42 41-87 154-195 (373)
178 TIGR01979 sufS cysteine desulf 94.2 0.16 3.4E-06 40.8 6.2 42 40-85 158-199 (403)
179 TIGR03537 DapC succinyldiamino 94.1 0.36 7.7E-06 38.3 8.1 46 41-87 136-181 (350)
180 PRK13479 2-aminoethylphosphona 94.0 0.31 6.7E-06 38.6 7.5 24 64-88 150-173 (368)
181 PRK08248 O-acetylhomoserine am 94.0 0.18 3.9E-06 42.1 6.5 42 40-85 148-189 (431)
182 PRK07812 O-acetylhomoserine am 94.0 0.19 4.2E-06 42.2 6.6 42 40-85 154-195 (436)
183 PRK06207 aspartate aminotransf 94.0 0.36 7.9E-06 39.4 8.0 46 44-91 182-227 (405)
184 PRK08134 O-acetylhomoserine am 94.0 0.19 4E-06 42.2 6.4 42 40-85 148-189 (433)
185 PTZ00094 serine hydroxymethylt 93.9 0.3 6.5E-06 40.6 7.5 44 64-112 199-242 (452)
186 PRK02948 cysteine desulfurase; 93.9 0.2 4.3E-06 39.9 6.2 45 41-90 138-182 (381)
187 PRK08361 aspartate aminotransf 93.9 0.24 5.3E-06 39.8 6.7 46 41-87 166-211 (391)
188 PRK06702 O-acetylhomoserine am 93.8 0.21 4.6E-06 42.0 6.5 41 40-84 146-186 (432)
189 TIGR03539 DapC_actino succinyl 93.8 0.15 3.2E-06 40.6 5.3 51 40-91 141-191 (357)
190 PLN02855 Bifunctional selenocy 93.7 0.24 5.2E-06 40.4 6.4 41 41-85 173-213 (424)
191 PLN02242 methionine gamma-lyas 93.6 0.16 3.5E-06 42.2 5.5 43 41-87 163-205 (418)
192 cd06450 DOPA_deC_like DOPA dec 93.5 0.22 4.8E-06 38.8 5.8 24 64-87 167-190 (345)
193 TIGR01141 hisC histidinol-phos 93.5 0.41 8.8E-06 37.5 7.3 48 40-89 141-188 (346)
194 PRK13355 bifunctional HTH-doma 93.5 0.24 5.2E-06 41.9 6.3 44 43-88 284-327 (517)
195 PLN02397 aspartate transaminas 93.3 0.31 6.8E-06 40.1 6.7 44 44-88 196-240 (423)
196 COG0436 Aspartate/tyrosine/aro 93.3 0.12 2.6E-06 42.7 4.1 49 41-91 163-212 (393)
197 PRK08133 O-succinylhomoserine 93.3 0.19 4E-06 41.2 5.2 42 40-85 145-186 (390)
198 TIGR02618 tyr_phenol_ly tyrosi 93.3 0.2 4.2E-06 42.9 5.4 58 23-85 157-214 (450)
199 PRK05967 cystathionine beta-ly 93.2 0.42 9.2E-06 39.8 7.3 43 40-86 148-190 (395)
200 PLN02376 1-aminocyclopropane-1 93.2 0.51 1.1E-05 40.1 7.9 50 40-91 198-248 (496)
201 PRK08861 cystathionine gamma-s 93.2 0.34 7.4E-06 40.0 6.7 42 40-85 137-178 (388)
202 PRK09028 cystathionine beta-ly 93.2 0.32 6.9E-06 40.4 6.5 42 40-85 145-186 (394)
203 PRK13237 tyrosine phenol-lyase 93.1 0.2 4.3E-06 42.9 5.3 58 23-85 164-221 (460)
204 PRK06348 aspartate aminotransf 93.1 0.23 5E-06 40.0 5.4 47 41-88 162-208 (384)
205 PRK07681 aspartate aminotransf 93.1 0.3 6.6E-06 39.5 6.1 46 41-88 166-212 (399)
206 PRK08056 threonine-phosphate d 92.9 0.25 5.4E-06 39.3 5.3 46 41-88 142-188 (356)
207 PRK08068 transaminase; Reviewe 92.9 0.71 1.5E-05 37.1 8.0 49 41-91 167-216 (389)
208 PRK09147 succinyldiaminopimela 92.9 0.35 7.6E-06 39.0 6.2 46 41-87 166-211 (396)
209 PRK08249 cystathionine gamma-s 92.8 0.26 5.7E-06 40.6 5.4 43 40-86 148-190 (398)
210 PRK07683 aminotransferase A; V 92.7 0.68 1.5E-05 37.3 7.7 31 57-87 176-206 (387)
211 TIGR01264 tyr_amTase_E tyrosin 92.6 0.59 1.3E-05 37.7 7.2 48 42-91 169-217 (401)
212 TIGR01328 met_gam_lyase methio 92.6 0.26 5.6E-06 40.5 5.1 42 40-85 143-184 (391)
213 PLN02450 1-aminocyclopropane-1 92.6 0.5 1.1E-05 39.7 6.9 50 40-91 190-240 (468)
214 PRK07811 cystathionine gamma-s 92.6 0.4 8.7E-06 39.3 6.2 43 40-86 145-187 (388)
215 PRK13034 serine hydroxymethylt 92.5 0.52 1.1E-05 38.9 6.9 53 23-91 158-211 (416)
216 KOG1359|consensus 92.5 0.13 2.9E-06 42.7 3.3 68 40-113 192-263 (417)
217 PRK06460 hypothetical protein; 92.5 0.32 6.9E-06 39.7 5.5 43 40-86 129-171 (376)
218 PTZ00377 alanine aminotransfer 92.4 0.53 1.1E-05 39.4 6.9 46 41-88 218-264 (481)
219 PRK07503 methionine gamma-lyas 92.4 0.26 5.6E-06 40.6 5.0 43 40-86 149-191 (403)
220 PRK06358 threonine-phosphate d 92.4 1.1 2.4E-05 35.7 8.4 48 42-91 142-190 (354)
221 PRK07050 cystathionine beta-ly 92.4 0.58 1.3E-05 38.5 6.9 42 40-85 149-190 (394)
222 PRK07366 succinyldiaminopimela 92.3 0.48 1E-05 38.0 6.3 47 41-88 165-211 (388)
223 TIGR01437 selA_rel uncharacter 92.3 0.37 8E-06 39.0 5.6 22 64-85 168-189 (363)
224 TIGR03540 DapC_direct LL-diami 92.2 0.31 6.8E-06 38.9 5.1 47 40-88 163-210 (383)
225 PRK09276 LL-diaminopimelate am 92.2 0.36 7.8E-06 38.6 5.5 48 40-88 165-212 (385)
226 TIGR02539 SepCysS Sep-tRNA:Cys 92.0 0.61 1.3E-05 37.4 6.6 41 41-85 146-186 (370)
227 PLN02409 serine--glyoxylate am 92.0 0.34 7.3E-06 39.6 5.1 41 41-85 137-179 (401)
228 PRK07865 N-succinyldiaminopime 92.0 0.39 8.5E-06 38.2 5.4 51 40-91 147-197 (364)
229 PRK07590 L,L-diaminopimelate a 91.9 0.36 7.9E-06 39.2 5.2 46 41-88 176-222 (409)
230 PRK09148 aminotransferase; Val 91.9 0.57 1.2E-05 38.1 6.3 46 41-88 165-211 (405)
231 TIGR03588 PseC UDP-4-keto-6-de 91.9 0.25 5.3E-06 39.7 4.1 22 64-85 137-158 (380)
232 PRK06290 aspartate aminotransf 91.8 0.53 1.2E-05 38.7 6.1 46 40-87 178-224 (410)
233 TIGR03576 pyridox_MJ0158 pyrid 91.8 0.68 1.5E-05 37.4 6.7 44 41-86 136-179 (346)
234 cd06452 SepCysS Sep-tRNA:Cys-t 91.8 0.59 1.3E-05 37.1 6.2 41 41-85 139-179 (361)
235 PLN02509 cystathionine beta-ly 91.7 0.59 1.3E-05 39.8 6.4 42 40-85 216-257 (464)
236 TIGR03531 selenium_SpcS O-phos 91.7 1.1 2.4E-05 38.1 8.0 56 22-86 191-246 (444)
237 PRK08912 hypothetical protein; 91.7 0.38 8.3E-06 38.6 5.1 45 41-87 159-204 (387)
238 PF00266 Aminotran_5: Aminotra 91.6 1.2 2.6E-05 35.5 7.7 61 40-112 138-198 (371)
239 PRK06767 methionine gamma-lyas 91.6 0.4 8.6E-06 39.1 5.1 42 40-85 145-186 (386)
240 TIGR02080 O_succ_thio_ly O-suc 91.5 0.43 9.3E-06 39.1 5.2 42 40-85 135-176 (382)
241 PRK08045 cystathionine gamma-s 91.4 0.46 1E-05 39.0 5.4 44 40-87 136-179 (386)
242 PRK08363 alanine aminotransfer 91.4 1.1 2.4E-05 36.1 7.4 45 41-87 166-211 (398)
243 PRK09082 methionine aminotrans 91.4 0.43 9.4E-06 38.4 5.1 46 41-87 163-208 (386)
244 PRK07582 cystathionine gamma-l 91.3 0.69 1.5E-05 37.5 6.2 42 40-85 131-172 (366)
245 PRK00011 glyA serine hydroxyme 91.2 0.65 1.4E-05 37.6 6.0 22 64-85 182-203 (416)
246 PRK06107 aspartate aminotransf 91.2 1.2 2.6E-05 36.1 7.5 49 41-91 166-216 (402)
247 PRK05957 aspartate aminotransf 91.2 0.6 1.3E-05 37.7 5.7 47 41-88 160-206 (389)
248 PRK15481 transcriptional regul 91.1 0.73 1.6E-05 37.7 6.2 48 41-88 211-259 (431)
249 PRK05664 threonine-phosphate d 91.1 0.82 1.8E-05 36.1 6.3 44 43-88 127-170 (330)
250 PTZ00433 tyrosine aminotransfe 91.1 1.2 2.7E-05 36.2 7.5 49 41-91 177-226 (412)
251 PRK02731 histidinol-phosphate 91.0 0.73 1.6E-05 36.4 6.0 69 41-113 154-225 (367)
252 PLN02368 alanine transaminase 90.9 0.56 1.2E-05 38.8 5.4 46 41-88 210-256 (407)
253 KOG0257|consensus 90.8 0.36 7.7E-06 41.0 4.2 35 57-91 187-221 (420)
254 PRK00950 histidinol-phosphate 90.8 0.55 1.2E-05 37.0 5.1 43 41-88 158-201 (361)
255 PRK12414 putative aminotransfe 90.7 0.62 1.3E-05 37.5 5.4 46 41-87 162-207 (384)
256 PRK08153 histidinol-phosphate 90.7 0.81 1.8E-05 36.7 6.0 50 40-92 154-204 (369)
257 PRK08247 cystathionine gamma-s 90.5 0.64 1.4E-05 37.6 5.3 41 40-84 135-175 (366)
258 PRK07671 cystathionine beta-ly 90.4 0.65 1.4E-05 37.9 5.3 42 40-85 133-174 (377)
259 PRK08637 hypothetical protein; 90.3 1 2.2E-05 36.4 6.3 50 42-91 146-200 (388)
260 PRK09265 aminotransferase AlaT 90.3 0.7 1.5E-05 37.4 5.4 46 41-88 168-214 (404)
261 PRK06425 histidinol-phosphate 90.3 1.4 3.1E-05 34.7 7.0 32 57-88 137-168 (332)
262 TIGR03542 DAPAT_plant LL-diami 90.3 0.67 1.4E-05 37.6 5.2 46 41-88 173-219 (402)
263 COG0075 Serine-pyruvate aminot 90.2 1.4 3.1E-05 37.0 7.2 70 22-111 119-189 (383)
264 PRK07269 cystathionine gamma-s 90.0 0.91 2E-05 37.0 5.9 41 40-84 135-175 (364)
265 PRK08776 cystathionine gamma-s 89.9 0.72 1.6E-05 38.2 5.3 43 40-86 144-186 (405)
266 PRK11658 UDP-4-amino-4-deoxy-L 89.9 0.4 8.7E-06 38.9 3.7 24 64-87 137-161 (379)
267 TIGR03538 DapC_gpp succinyldia 89.9 0.67 1.4E-05 37.3 4.9 46 41-88 165-211 (393)
268 cd00378 SHMT Serine-glycine hy 89.8 1 2.2E-05 36.1 5.9 24 64-87 178-202 (402)
269 PRK06234 methionine gamma-lyas 89.8 0.71 1.5E-05 37.9 5.1 42 40-85 148-191 (400)
270 PRK05942 aspartate aminotransf 89.6 0.85 1.9E-05 36.8 5.4 46 41-88 170-216 (394)
271 COG3033 TnaA Tryptophanase [Am 89.6 0.83 1.8E-05 38.9 5.3 57 23-84 172-228 (471)
272 PRK03321 putative aminotransfe 89.5 1.8 4E-05 34.0 7.1 65 41-111 145-211 (352)
273 PRK08064 cystathionine beta-ly 89.4 0.86 1.9E-05 37.3 5.3 43 40-86 137-179 (390)
274 PRK05839 hypothetical protein; 89.4 0.79 1.7E-05 36.9 5.0 45 42-88 156-201 (374)
275 PRK08354 putative aminotransfe 89.2 0.89 1.9E-05 35.6 5.1 44 43-88 120-163 (311)
276 TIGR02379 ECA_wecE TDP-4-keto- 89.2 0.7 1.5E-05 37.7 4.6 22 64-85 135-156 (376)
277 PLN02672 methionine S-methyltr 88.8 1.3 2.9E-05 41.6 6.6 49 42-91 830-878 (1082)
278 PRK08114 cystathionine beta-ly 88.6 2 4.2E-05 35.9 6.9 60 40-112 146-207 (395)
279 PRK06836 aspartate aminotransf 88.1 1.3 2.9E-05 35.8 5.5 49 40-89 167-221 (394)
280 KOG0258|consensus 88.1 1.5 3.2E-05 37.6 5.9 72 22-98 200-272 (475)
281 KOG0256|consensus 87.6 2.7 5.9E-05 36.1 7.2 47 40-87 225-271 (471)
282 PRK13580 serine hydroxymethylt 87.0 1.1 2.4E-05 38.8 4.6 27 64-91 237-263 (493)
283 TIGR00474 selA seryl-tRNA(sec) 86.6 2.1 4.6E-05 36.3 6.1 40 40-82 210-252 (454)
284 KOG1360|consensus 86.6 1.9 4.2E-05 37.2 5.8 54 23-85 290-343 (570)
285 PRK04366 glycine dehydrogenase 86.4 2.4 5.3E-05 35.7 6.3 42 40-85 207-248 (481)
286 PLN02414 glycine dehydrogenase 86.3 3.6 7.9E-05 38.4 7.8 53 23-85 654-706 (993)
287 PRK14809 histidinol-phosphate 86.2 1.9 4.1E-05 34.2 5.3 48 42-91 155-202 (357)
288 PRK09440 avtA valine--pyruvate 86.2 1.5 3.3E-05 35.5 4.8 45 40-85 178-222 (416)
289 COG2873 MET17 O-acetylhomoseri 86.2 2.3 5E-05 36.2 5.9 43 40-86 146-188 (426)
290 PRK04311 selenocysteine syntha 86.0 3.4 7.4E-05 35.2 7.0 40 40-82 215-257 (464)
291 PRK11706 TDP-4-oxo-6-deoxy-D-g 85.5 1.4 2.9E-05 35.6 4.2 22 64-85 135-156 (375)
292 TIGR03801 asp_4_decarbox aspar 85.0 2.1 4.5E-05 37.1 5.3 47 40-88 239-288 (521)
293 PF01041 DegT_DnrJ_EryC1: DegT 84.5 5.5 0.00012 32.0 7.3 38 41-85 113-150 (363)
294 KOG2862|consensus 83.8 2.8 6E-05 35.1 5.3 68 19-101 128-195 (385)
295 PRK03158 histidinol-phosphate 83.3 2.6 5.7E-05 33.3 4.9 47 40-88 150-196 (359)
296 PF01053 Cys_Met_Meta_PP: Cys/ 83.3 5.5 0.00012 33.1 7.0 42 40-85 139-181 (386)
297 PRK05968 hypothetical protein; 83.2 2.4 5.2E-05 34.7 4.8 42 41-86 147-188 (389)
298 PRK05367 glycine dehydrogenase 82.9 6.1 0.00013 36.7 7.7 53 23-85 628-680 (954)
299 KOG0053|consensus 82.9 5.4 0.00012 33.9 6.8 60 40-112 161-220 (409)
300 PRK14807 histidinol-phosphate 82.3 4.1 8.8E-05 32.3 5.7 43 41-87 148-190 (351)
301 PRK00451 glycine dehydrogenase 81.9 3.3 7.1E-05 34.0 5.1 41 40-85 203-245 (447)
302 PRK10534 L-threonine aldolase; 81.7 3 6.6E-05 32.5 4.7 42 41-85 129-170 (333)
303 PRK09275 aspartate aminotransf 81.5 3.3 7.3E-05 35.9 5.3 47 40-88 240-289 (527)
304 COG2008 GLY1 Threonine aldolas 81.2 3.1 6.7E-05 34.6 4.7 41 40-81 129-169 (342)
305 KOG1357|consensus 80.5 3.6 7.8E-05 35.8 5.0 76 23-106 254-335 (519)
306 TIGR03799 NOD_PanD_pyr putativ 79.7 8.6 0.00019 33.3 7.1 44 40-87 264-307 (522)
307 COG0520 csdA Selenocysteine ly 78.8 8.1 0.00018 32.3 6.5 42 40-85 161-202 (405)
308 PF13481 AAA_25: AAA domain; P 78.3 5.2 0.00011 28.6 4.7 40 41-80 141-184 (193)
309 PRK07049 methionine gamma-lyas 77.5 9.6 0.00021 31.8 6.6 47 40-87 173-222 (427)
310 PRK07392 threonine-phosphate d 76.5 14 0.0003 29.3 7.0 43 43-91 151-193 (360)
311 PLN03226 serine hydroxymethylt 76.3 2.4 5.2E-05 36.1 2.7 27 64-91 200-226 (475)
312 COG1103 Archaea-specific pyrid 74.8 11 0.00024 31.3 6.1 89 5-111 126-214 (382)
313 PRK06959 putative threonine-ph 74.1 9.5 0.00021 30.3 5.6 44 43-88 133-176 (339)
314 COG1104 NifS Cysteine sulfinat 71.3 12 0.00025 31.7 5.6 61 40-112 140-200 (386)
315 PRK02769 histidine decarboxyla 70.9 16 0.00035 30.1 6.3 54 24-87 149-205 (380)
316 COG1167 ARO8 Transcriptional r 69.6 19 0.00042 30.3 6.6 61 24-92 217-277 (459)
317 PF03853 YjeF_N: YjeF-related 68.9 13 0.00027 27.1 4.8 61 43-110 100-161 (169)
318 PLN02880 tyrosine decarboxylas 67.4 17 0.00038 30.9 6.0 65 12-87 217-281 (490)
319 PF00464 SHMT: Serine hydroxym 67.4 13 0.00028 31.4 5.1 49 23-85 159-207 (399)
320 cd01821 Rhamnogalacturan_acety 67.1 31 0.00067 24.7 6.6 58 17-79 88-150 (198)
321 PRK04870 histidinol-phosphate 65.8 18 0.00039 28.5 5.5 44 41-88 153-196 (356)
322 TIGR00461 gcvP glycine dehydro 65.6 20 0.00043 33.6 6.3 54 23-86 616-669 (939)
323 PF02593 dTMP_synthase: Thymid 64.1 12 0.00026 29.1 4.0 75 3-92 46-120 (217)
324 KOG1358|consensus 63.6 12 0.00026 32.2 4.2 60 43-111 235-300 (467)
325 PRK02610 histidinol-phosphate 63.5 16 0.00036 29.2 4.9 46 40-88 167-212 (374)
326 COG0352 ThiE Thiamine monophos 62.2 9.2 0.0002 29.5 3.1 22 61-82 51-72 (211)
327 PRK05166 histidinol-phosphate 62.2 10 0.00022 30.3 3.5 33 54-88 172-204 (371)
328 cd01123 Rad51_DMC1_radA Rad51_ 61.5 29 0.00064 25.6 5.7 58 23-87 104-173 (235)
329 COG3977 Alanine-alpha-ketoisov 59.6 20 0.00043 30.2 4.8 43 40-83 178-220 (417)
330 PRK04781 histidinol-phosphate 59.6 29 0.00063 27.7 5.7 47 40-88 151-197 (364)
331 PRK12566 glycine dehydrogenase 59.3 25 0.00055 33.0 5.8 53 23-85 629-681 (954)
332 PRK01688 histidinol-phosphate 59.2 43 0.00092 26.6 6.5 31 57-88 160-190 (351)
333 PRK05409 hypothetical protein; 58.8 21 0.00045 28.8 4.6 40 45-84 58-98 (281)
334 PRK09105 putative aminotransfe 58.8 21 0.00045 28.8 4.7 42 44-88 169-210 (370)
335 PF05889 SLA_LP_auto_ag: Solub 58.7 27 0.00059 29.5 5.5 53 23-84 142-194 (389)
336 COG0062 Uncharacterized conser 58.4 31 0.00068 26.5 5.4 62 42-110 119-181 (203)
337 cd00984 DnaB_C DnaB helicase C 58.0 50 0.0011 24.5 6.4 41 40-80 122-168 (242)
338 COG1810 Uncharacterized protei 57.7 19 0.0004 28.4 4.1 72 4-91 51-122 (224)
339 PRK01533 histidinol-phosphate 57.6 28 0.00061 28.0 5.3 44 42-88 152-196 (366)
340 PLN02271 serine hydroxymethylt 57.0 46 0.001 29.7 6.8 22 64-85 315-336 (586)
341 COG3598 RepA RecA-family ATPas 56.1 26 0.00057 29.6 4.9 52 21-80 182-237 (402)
342 cd07571 ALP_N-acyl_transferase 55.5 58 0.0013 25.0 6.6 38 43-80 40-77 (270)
343 COG0399 WecE Predicted pyridox 55.1 20 0.00044 30.0 4.2 38 41-85 122-159 (374)
344 KOG1368|consensus 54.8 17 0.00037 30.4 3.6 42 41-82 154-195 (384)
345 KOG1549|consensus 54.6 22 0.00047 30.5 4.3 42 40-85 180-221 (428)
346 COG0626 MetC Cystathionine bet 54.5 21 0.00045 30.2 4.1 59 41-112 149-207 (396)
347 PF13401 AAA_22: AAA domain; P 53.1 16 0.00034 24.2 2.7 27 59-85 71-98 (131)
348 smart00545 JmjN Small domain f 51.0 17 0.00036 21.2 2.2 22 59-80 14-35 (42)
349 PF07505 Gp37_Gp68: Phage prot 49.4 25 0.00053 28.1 3.7 27 55-81 201-227 (261)
350 TIGR00197 yjeF_nterm yjeF N-te 48.4 52 0.0011 24.7 5.2 61 43-110 115-176 (205)
351 PF08543 Phos_pyr_kin: Phospho 47.3 12 0.00026 28.7 1.5 29 57-85 68-96 (246)
352 PF03841 SelA: L-seryl-tRNA se 46.0 32 0.00069 28.9 3.9 19 63-81 158-176 (367)
353 PTZ00276 biotin/lipoate protei 45.6 12 0.00026 29.0 1.4 37 61-98 19-55 (245)
354 COG1105 FruK Fructose-1-phosph 45.1 88 0.0019 25.7 6.3 23 59-81 143-165 (310)
355 KOG4476|consensus 44.9 13 0.00027 29.7 1.3 17 73-89 45-61 (248)
356 COG5037 TOS9 Gluconate transpo 44.9 13 0.00027 29.7 1.3 17 73-89 45-61 (248)
357 PF00586 AIRS: AIR synthase re 44.8 30 0.00066 22.3 3.0 19 61-79 74-92 (96)
358 PF01276 OKR_DC_1: Orn/Lys/Arg 44.7 29 0.00064 29.4 3.6 54 22-87 153-209 (417)
359 cd07576 R-amidase_like Pseudom 44.3 85 0.0018 23.3 5.8 22 60-81 60-81 (254)
360 PRK07908 hypothetical protein; 44.1 37 0.0008 26.7 3.9 41 41-87 139-180 (349)
361 PF00128 Alpha-amylase: Alpha 43.7 25 0.00055 26.2 2.8 31 61-91 51-81 (316)
362 PRK06512 thiamine-phosphate py 43.6 31 0.00067 26.4 3.3 21 62-82 58-78 (221)
363 PLN03026 histidinol-phosphate 43.4 96 0.0021 25.0 6.3 44 40-88 174-217 (380)
364 TIGR00097 HMP-P_kinase phospho 42.9 96 0.0021 23.5 6.0 52 18-85 52-104 (254)
365 KOG0352|consensus 42.5 49 0.0011 29.2 4.6 56 40-112 112-168 (641)
366 cd01125 repA Hexameric Replica 42.4 81 0.0018 23.7 5.5 44 40-83 110-158 (239)
367 PF04909 Amidohydro_2: Amidohy 42.2 97 0.0021 22.7 5.8 40 40-81 97-136 (273)
368 PF05114 DUF692: Protein of un 41.7 40 0.00086 27.0 3.8 39 45-83 56-95 (274)
369 PRK03967 histidinol-phosphate 41.6 49 0.0011 26.1 4.3 23 65-88 160-182 (337)
370 TIGR01788 Glu-decarb-GAD gluta 40.7 81 0.0018 26.5 5.6 43 41-87 186-234 (431)
371 PLN03032 serine decarboxylase; 40.6 88 0.0019 25.9 5.8 54 24-87 150-208 (374)
372 PRK06434 cystathionine gamma-l 40.1 41 0.00088 27.8 3.7 57 41-112 148-204 (384)
373 PF02347 GDC-P: Glycine cleava 39.7 71 0.0015 27.3 5.2 36 40-80 196-231 (429)
374 cd01169 HMPP_kinase 4-amino-5- 39.2 1.2E+02 0.0027 22.3 6.0 49 21-85 56-105 (242)
375 cd01422 MGS Methylglyoxal synt 38.6 1.3E+02 0.0027 20.6 5.5 36 40-80 69-106 (115)
376 TIGR01689 EcbF-BcbF capsule bi 37.3 31 0.00067 24.4 2.3 51 52-108 56-106 (126)
377 PF02375 JmjN: jmjN domain; I 37.3 15 0.00032 20.6 0.5 22 59-80 12-33 (34)
378 PRK05367 glycine dehydrogenase 37.2 65 0.0014 30.2 4.9 40 40-84 205-244 (954)
379 cd01393 recA_like RecA is a b 37.2 1.5E+02 0.0033 21.5 6.2 45 40-84 113-169 (226)
380 PF07894 DUF1669: Protein of u 37.0 1.4E+02 0.0031 24.2 6.3 47 23-84 137-185 (284)
381 PRK05387 histidinol-phosphate 36.8 54 0.0012 25.6 3.8 40 45-88 149-188 (353)
382 KOG3242|consensus 36.6 67 0.0014 24.9 4.1 35 41-75 47-86 (208)
383 smart00642 Aamy Alpha-amylase 36.2 48 0.001 24.1 3.2 26 61-86 69-94 (166)
384 PRK05380 pyrG CTP synthetase; 36.0 46 0.00099 29.3 3.5 88 12-111 109-209 (533)
385 TIGR01366 serC_3 phosphoserine 35.3 27 0.00058 28.2 1.9 38 41-85 128-165 (361)
386 TIGR02352 thiamin_ThiO glycine 35.1 1E+02 0.0022 23.5 5.1 67 40-112 120-188 (337)
387 PRK04635 histidinol-phosphate 35.1 48 0.001 26.2 3.3 45 41-88 147-191 (354)
388 cd07581 nitrilase_3 Uncharacte 35.0 1.2E+02 0.0026 22.6 5.3 20 61-80 60-79 (255)
389 PRK12412 pyridoxal kinase; Rev 34.8 1.5E+02 0.0033 22.7 6.0 52 18-85 57-109 (268)
390 cd01835 SGNH_hydrolase_like_3 34.7 1.4E+02 0.003 21.1 5.5 56 18-79 94-153 (193)
391 PF13714 PEP_mutase: Phosphoen 34.2 56 0.0012 25.5 3.5 32 57-89 51-82 (238)
392 PRK15029 arginine decarboxylas 33.9 37 0.00081 31.0 2.7 28 64-91 330-357 (755)
393 PRK08999 hypothetical protein; 33.2 55 0.0012 25.6 3.4 21 61-81 174-194 (312)
394 cd01122 GP4d_helicase GP4d_hel 32.8 1.5E+02 0.0033 22.3 5.7 40 40-79 139-185 (271)
395 KOG0634|consensus 32.8 47 0.001 28.8 3.0 29 57-85 219-247 (472)
396 PRK10565 putative carbohydrate 32.5 1.1E+02 0.0024 26.4 5.3 61 43-110 130-191 (508)
397 cd07578 nitrilase_1_R1 First n 32.5 2.2E+02 0.0047 21.4 6.8 38 43-80 34-83 (258)
398 cd01827 sialate_O-acetylestera 32.3 1.8E+02 0.0038 20.3 5.9 19 61-79 134-152 (188)
399 PRK05935 biotin--protein ligas 32.2 28 0.0006 26.2 1.4 24 74-98 29-52 (190)
400 TIGR00121 birA_ligase birA, bi 32.1 28 0.0006 26.6 1.5 24 74-98 25-48 (237)
401 smart00382 AAA ATPases associa 31.7 73 0.0016 19.9 3.3 28 60-87 63-91 (148)
402 PRK04301 radA DNA repair and r 31.6 1.8E+02 0.004 22.9 6.1 48 40-87 197-256 (317)
403 PF13173 AAA_14: AAA domain 31.6 34 0.00073 23.2 1.7 21 65-85 52-72 (128)
404 PF14307 Glyco_tran_WbsX: Glyc 31.0 1.2E+02 0.0027 24.5 5.1 54 23-82 142-198 (345)
405 TIGR02317 prpB methylisocitrat 31.0 53 0.0012 26.4 3.0 32 57-89 55-86 (285)
406 PF03102 NeuB: NeuB family; I 30.9 62 0.0014 25.3 3.3 23 58-80 52-74 (241)
407 KOG3406|consensus 30.9 2.1E+02 0.0046 20.8 6.0 23 57-79 59-81 (134)
408 PLN03050 pyridoxine (pyridoxam 30.3 1.4E+02 0.003 23.3 5.1 61 43-110 135-199 (246)
409 KOG1270|consensus 30.2 33 0.00071 27.9 1.6 41 58-99 172-212 (282)
410 PF13472 Lipase_GDSL_2: GDSL-l 30.0 1.7E+02 0.0036 19.3 5.1 59 15-79 81-147 (179)
411 PRK14139 heat shock protein Gr 29.7 90 0.002 23.7 3.8 75 15-114 110-184 (185)
412 TIGR02319 CPEP_Pphonmut carbox 29.6 59 0.0013 26.3 3.0 34 57-91 59-92 (294)
413 PRK06955 biotin--protein ligas 29.5 55 0.0012 26.1 2.8 25 73-98 63-87 (300)
414 PF01297 TroA: Periplasmic sol 29.4 89 0.0019 23.7 3.9 30 57-86 181-210 (256)
415 TIGR03381 agmatine_aguB N-carb 29.3 1.8E+02 0.0039 21.9 5.6 19 62-80 66-84 (279)
416 cd07579 nitrilase_1_R2 Second 29.3 1.8E+02 0.0039 22.6 5.6 38 43-80 32-76 (279)
417 cd01838 Isoamyl_acetate_hydrol 28.8 2E+02 0.0044 19.9 5.8 59 18-79 87-160 (199)
418 PRK13602 putative ribosomal pr 28.8 70 0.0015 20.8 2.7 25 59-83 37-61 (82)
419 PF12310 Elf-1_N: Transcriptio 28.3 47 0.001 23.3 2.0 32 40-87 29-60 (108)
420 TIGR00789 flhB_rel flhB C-term 28.2 54 0.0012 21.6 2.1 25 61-85 26-50 (82)
421 cd01834 SGNH_hydrolase_like_2 28.0 2E+02 0.0044 19.7 5.9 59 18-79 84-151 (191)
422 PF02581 TMP-TENI: Thiamine mo 27.9 67 0.0014 23.3 2.8 21 62-82 43-63 (180)
423 PF14871 GHL6: Hypothetical gl 27.8 65 0.0014 22.8 2.7 21 60-80 42-62 (132)
424 cd00396 PurM-like AIR (aminoim 27.5 25 0.00055 26.0 0.5 20 61-80 58-77 (222)
425 PF02677 DUF208: Uncharacteriz 27.1 2.2E+02 0.0048 21.4 5.6 37 40-82 23-62 (176)
426 COG2159 Predicted metal-depend 27.0 3.1E+02 0.0067 21.8 6.7 53 23-89 116-168 (293)
427 PF05707 Zot: Zonular occluden 27.0 42 0.00091 24.6 1.6 14 74-87 79-92 (193)
428 PRK08883 ribulose-phosphate 3- 26.8 2.3E+02 0.0051 21.6 5.8 42 40-81 130-173 (220)
429 cd00287 ribokinase_pfkB_like r 26.8 92 0.002 21.7 3.3 24 61-84 70-93 (196)
430 cd01121 Sms Sms (bacterial rad 26.6 1.4E+02 0.0031 24.7 4.8 41 40-80 157-205 (372)
431 PRK08477 biotin--protein ligas 26.3 60 0.0013 24.8 2.4 25 73-98 26-50 (211)
432 cd07583 nitrilase_5 Uncharacte 26.2 2.6E+02 0.0056 20.7 5.9 37 44-80 34-79 (253)
433 TIGR02236 recomb_radA DNA repa 26.2 3E+02 0.0066 21.4 6.5 58 23-86 180-249 (310)
434 PLN02978 pyridoxal kinase 26.0 91 0.002 24.8 3.5 35 43-77 118-153 (308)
435 cd07197 nitrilase Nitrilase su 26.0 2.4E+02 0.0053 20.5 5.6 22 60-81 61-82 (253)
436 KOG3974|consensus 26.0 96 0.0021 25.5 3.6 39 40-81 100-138 (306)
437 cd00958 DhnA Class I fructose- 25.9 71 0.0015 23.9 2.8 21 62-82 109-129 (235)
438 PF14975 DUF4512: Domain of un 25.9 69 0.0015 21.7 2.3 17 16-32 10-26 (88)
439 PRK14158 heat shock protein Gr 25.7 1.3E+02 0.0029 22.9 4.2 75 15-113 119-194 (194)
440 PRK14141 heat shock protein Gr 25.3 1.2E+02 0.0026 23.5 3.9 76 14-114 116-192 (209)
441 PRK13600 putative ribosomal pr 25.0 69 0.0015 21.3 2.2 31 59-89 39-69 (84)
442 PLN02590 probable tyrosine dec 25.0 2E+02 0.0043 25.2 5.6 65 12-87 265-329 (539)
443 PRK08573 phosphomethylpyrimidi 24.9 2.1E+02 0.0045 24.0 5.6 51 19-85 57-107 (448)
444 cd07564 nitrilases_CHs Nitrila 24.8 2.4E+02 0.0053 21.8 5.7 21 61-81 75-95 (297)
445 PRK05234 mgsA methylglyoxal sy 24.8 2.4E+02 0.0052 20.1 5.2 38 40-81 74-112 (142)
446 PRK14160 heat shock protein Gr 24.6 79 0.0017 24.5 2.8 72 16-113 139-211 (211)
447 cd01841 NnaC_like NnaC (CMP-Ne 24.5 2.4E+02 0.0052 19.4 6.1 21 59-79 114-134 (174)
448 TIGR02237 recomb_radB DNA repa 24.5 2.7E+02 0.0059 20.0 5.7 48 40-87 96-153 (209)
449 cd01017 AdcA Metal binding pro 24.4 1.4E+02 0.0031 23.1 4.3 30 57-86 202-231 (282)
450 PF00150 Cellulase: Cellulase 24.3 91 0.002 23.1 3.0 23 62-84 62-84 (281)
451 cd07577 Ph0642_like Pyrococcus 24.3 3.1E+02 0.0067 20.5 6.2 38 43-80 30-80 (259)
452 PRK14155 heat shock protein Gr 24.2 1.4E+02 0.003 23.0 4.1 77 14-114 95-172 (208)
453 PF04015 DUF362: Domain of unk 24.2 2.2E+02 0.0047 20.8 5.0 30 57-86 18-49 (206)
454 TIGR00693 thiE thiamine-phosph 24.1 1.1E+02 0.0023 22.1 3.3 21 62-82 44-64 (196)
455 cd04501 SGNH_hydrolase_like_4 23.5 2.6E+02 0.0056 19.4 6.1 19 61-79 124-142 (183)
456 PF15609 PRTase_2: Phosphoribo 23.4 39 0.00084 26.0 0.9 40 41-86 93-134 (191)
457 COG4422 Bacteriophage protein 23.2 81 0.0018 24.7 2.6 39 56-98 197-235 (250)
458 PF03796 DnaB_C: DnaB-like hel 23.1 3.3E+02 0.0072 20.5 6.7 41 40-80 129-175 (259)
459 PRK04148 hypothetical protein; 23.1 1.1E+02 0.0023 22.1 3.1 24 57-80 84-107 (134)
460 PTZ00344 pyridoxal kinase; Pro 22.6 1E+02 0.0022 24.1 3.1 27 58-84 86-117 (296)
461 cd07584 nitrilase_6 Uncharacte 22.6 2.6E+02 0.0056 20.8 5.3 19 62-80 65-83 (258)
462 PF00563 EAL: EAL domain; Int 22.6 1.2E+02 0.0026 21.8 3.3 28 58-85 186-213 (236)
463 KOG3040|consensus 22.4 61 0.0013 25.9 1.8 52 58-110 181-246 (262)
464 PF03851 UvdE: UV-endonuclease 22.3 86 0.0019 25.2 2.7 18 64-81 192-209 (275)
465 cd07573 CPA N-carbamoylputresc 22.2 3E+02 0.0064 20.8 5.6 21 60-80 64-84 (284)
466 COG0340 BirA Biotin-(acetyl-Co 22.1 60 0.0013 25.3 1.7 37 62-99 9-45 (238)
467 PF03447 NAD_binding_3: Homose 22.0 1.4E+02 0.0031 19.7 3.4 27 52-79 89-115 (117)
468 PRK02615 thiamine-phosphate py 21.8 1.1E+02 0.0023 25.4 3.2 20 63-82 189-208 (347)
469 cd07585 nitrilase_7 Uncharacte 21.8 3E+02 0.0064 20.5 5.5 20 61-80 61-80 (261)
470 PF10087 DUF2325: Uncharacteri 21.6 1.2E+02 0.0025 19.8 2.8 23 59-81 59-81 (97)
471 cd01424 MGS_CPS_II Methylglyox 21.6 2.5E+02 0.0054 18.4 5.3 36 40-81 66-101 (110)
472 PRK14808 histidinol-phosphate 21.5 1.6E+02 0.0034 23.3 4.0 35 48-87 144-179 (335)
473 smart00052 EAL Putative diguan 21.3 1.3E+02 0.0027 21.7 3.2 26 60-85 188-213 (241)
474 PF08543 Phos_pyr_kin: Phospho 21.3 3.7E+02 0.008 20.3 6.5 41 44-84 88-131 (246)
475 PRK08330 biotin--protein ligas 21.2 70 0.0015 24.3 1.9 36 61-98 15-50 (236)
476 TIGR02321 Pphn_pyruv_hyd phosp 21.1 1.1E+02 0.0023 24.7 3.0 32 57-89 57-88 (290)
477 cd07572 nit Nit1, Nit 2, and r 21.1 3.4E+02 0.0073 20.2 5.7 38 43-80 32-80 (265)
478 PF02110 HK: Hydroxyethylthiaz 21.1 92 0.002 24.6 2.6 49 59-109 60-111 (246)
479 PLN02898 HMP-P kinase/thiamin- 21.0 3.5E+02 0.0075 23.0 6.2 53 18-86 63-116 (502)
480 cd07575 Xc-1258_like Xanthomon 20.6 3.7E+02 0.008 20.1 6.1 54 20-80 17-78 (252)
481 cd07568 ML_beta-AS_like mammal 20.6 3.4E+02 0.0073 20.6 5.6 20 61-80 76-95 (287)
482 PF00282 Pyridoxal_deC: Pyrido 20.5 3.8E+02 0.0083 21.9 6.2 59 17-86 177-235 (373)
483 TIGR01949 AroFGH_arch predicte 20.4 1E+02 0.0022 23.7 2.7 22 62-83 123-144 (258)
484 PF00795 CN_hydrolase: Carbon- 20.4 3.1E+02 0.0067 19.1 5.3 37 45-81 37-90 (186)
485 cd03281 ABC_MSH5_euk MutS5 hom 20.3 1E+02 0.0023 23.0 2.7 28 61-88 90-122 (213)
486 COG2513 PrpB PEP phosphonomuta 20.2 1.2E+02 0.0026 24.8 3.1 29 60-89 63-91 (289)
487 PRK03512 thiamine-phosphate py 20.2 1.4E+02 0.003 22.6 3.3 19 64-82 52-70 (211)
488 PRK07226 fructose-bisphosphate 20.2 1.1E+02 0.0023 23.8 2.8 21 61-81 125-145 (267)
489 cd01124 KaiC KaiC is a circadi 20.1 1.2E+02 0.0026 21.1 2.9 27 62-88 82-109 (187)
490 TIGR00416 sms DNA repair prote 20.1 2.4E+02 0.0051 24.0 5.0 39 41-79 170-216 (454)
No 1
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-30 Score=217.43 Aligned_cols=92 Identities=36% Similarity=0.561 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchh
Q psy1628 17 LLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWA 96 (114)
Q Consensus 17 ~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~ 96 (114)
......+++|+.+.+...++ +++||+|+||+||+||+++||++|++++|++|++||++||+|||||||||||+ ||+
T Consensus 201 ~~~~~~~~~e~~i~~~~~~~---~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa 276 (447)
T COG0160 201 CGDDALEYIERALFDLEVGP---EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFA 276 (447)
T ss_pred hhHHHHHHHHHHHHhhcCCC---CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chh
Confidence 34556677888555544466 89999999999999999999999999999999999999999999999999998 999
Q ss_pred hhhcCCCCCcCEEEeecC
Q psy1628 97 FQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 97 ~~~~g~~v~PDivt~gK~ 114 (114)
+|++| |+|||+|+||+
T Consensus 277 ~E~~g--v~PDivt~aK~ 292 (447)
T COG0160 277 FEHFG--VEPDIVTLAKS 292 (447)
T ss_pred hhhcC--CCCCEEEeccc
Confidence 99999 99999999996
No 2
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.8e-31 Score=218.86 Aligned_cols=106 Identities=26% Similarity=0.415 Sum_probs=89.8
Q ss_pred ccccchhHHHHHHHHHHHH-HHHHHHhc----C---------CCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q psy1628 6 LTECIIGRYIILLAVVHLF-FERIFLSA----S---------LYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHV 71 (114)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-~e~~~~~~----~---------~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc 71 (114)
+.+-|||||+..++++.+. ..+-|..- . ...-+++++||+|+||+||+||+++|+++|++++|++|
T Consensus 135 ~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lC 214 (404)
T COG4992 135 FENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELC 214 (404)
T ss_pred EcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHH
Confidence 5678999999999987765 33333210 0 00012368999999999999999999999999999999
Q ss_pred HHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 72 RAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 72 ~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++||+|||+||||||+||||+ +|++|++| ++|||+|++|+
T Consensus 215 d~~g~LLI~DEVQtG~GRTGk-~fA~e~~g--V~PDI~tlaK~ 254 (404)
T COG4992 215 DEHGALLILDEVQTGLGRTGK-LFAYEHYG--VEPDILTLAKA 254 (404)
T ss_pred HHhCeEEEEeccccCCCccch-HHHHHHhC--CCCCEEEeecc
Confidence 999999999999999999998 99999999 99999999996
No 3
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.96 E-value=1.9e-29 Score=210.58 Aligned_cols=93 Identities=33% Similarity=0.529 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628 12 GRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90 (114)
Q Consensus 12 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt 90 (114)
+.... +...+.||++++++ +| ++|||||+||+++. ||+.+||++||+++|++|++||||||+|||+||||||
T Consensus 192 ~~~~~--~~~a~~le~~i~~~--g~---~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRT 264 (449)
T COG0161 192 GDEEF--AEAADELEALILEH--GP---ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRT 264 (449)
T ss_pred ChHHH--HHHHHHHHHHHHhc--Cc---ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcC
Confidence 44444 56778999999997 57 89999999998776 9999999999999999999999999999999999999
Q ss_pred CccchhhhhcCCCCCcCEEEeecC
Q psy1628 91 GTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 91 G~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
|+ +|++|++| ++|||+|+||+
T Consensus 265 G~-~FA~e~~g--i~PDi~~~aKG 285 (449)
T COG0161 265 GK-MFACEHAG--IVPDILCLAKG 285 (449)
T ss_pred ch-hhhhhhcC--CCCCeeeeccc
Confidence 98 99999999 99999999996
No 4
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.96 E-value=2.3e-29 Score=209.01 Aligned_cols=83 Identities=28% Similarity=0.429 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
+.++++++++ + +++||+|+|| +||++|+++||++|++++|++|++||++||+|||||||||||+ ||+++++|
T Consensus 209 ~~l~~~l~~~---~---~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~~~g 281 (453)
T PRK06943 209 ADVRRLFAER---A---GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACEQAG 281 (453)
T ss_pred HHHHHHHHhC---C---CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHHhCC
Confidence 5667788764 3 7999999999 5999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 282 --v~PDivt~gKg 292 (453)
T PRK06943 282 --VWPDFLCLSKG 292 (453)
T ss_pred --CCCCeEeeehh
Confidence 99999999996
No 5
>PRK05965 hypothetical protein; Provisional
Probab=99.95 E-value=1.1e-28 Score=205.09 Aligned_cols=84 Identities=35% Similarity=0.590 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++ ++ ++|||||+||+||++|+++||++|++++|++|++||++||+|||||||||||+ ||+++++|
T Consensus 202 ~~l~~~i~~~--~~---~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~g- 274 (459)
T PRK05965 202 AALRAKVAEL--GA---DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEAEG- 274 (459)
T ss_pred HHHHHHHHhc--CC---CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhhcC-
Confidence 4677788764 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 275 -v~PDiv~~gKg 285 (459)
T PRK05965 275 -VVPDLMTVAKG 285 (459)
T ss_pred -CCCCeEEechh
Confidence 99999999996
No 6
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.95 E-value=9.3e-29 Score=206.70 Aligned_cols=84 Identities=32% Similarity=0.565 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~ 100 (114)
.+.++++++++ + ++|||+|+|| +||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++
T Consensus 223 ~~~l~~~~~~~---~---~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e~~ 295 (472)
T PRK08742 223 ADALQALFEQS---P---GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACEQA 295 (472)
T ss_pred HHHHHHHHHhC---C---CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHHhc
Confidence 35567777654 3 7999999999 6999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCcCEEEeecC
Q psy1628 101 GDDIIPDIVTVVWN 114 (114)
Q Consensus 101 g~~v~PDivt~gK~ 114 (114)
| ++|||+|+||+
T Consensus 296 g--v~PDiv~~gKg 307 (472)
T PRK08742 296 G--VMPDLLCLSKG 307 (472)
T ss_pred C--CCCCEEEEccc
Confidence 9 99999999996
No 7
>PRK07482 hypothetical protein; Provisional
Probab=99.95 E-value=2.6e-28 Score=202.97 Aligned_cols=86 Identities=33% Similarity=0.499 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628 21 VHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100 (114)
Q Consensus 21 ~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~ 100 (114)
..+.++++++++ ++ ++|||+|+||+||++|+++||++|++++|++|++||+|||+|||||||||||+ +|+++++
T Consensus 205 ~~~~l~~~~~~~--~~---~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~~~~ 278 (461)
T PRK07482 205 CADELEELILAE--GP---DTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS-MFGSDHY 278 (461)
T ss_pred HHHHHHHHHHhc--CC---CcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc-hhhHHhc
Confidence 346678888654 23 78999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCcCEEEeecC
Q psy1628 101 GDDIIPDIVTVVWN 114 (114)
Q Consensus 101 g~~v~PDivt~gK~ 114 (114)
| ++|||+|+||+
T Consensus 279 g--v~PDiv~~gKg 290 (461)
T PRK07482 279 G--IEPDLITVAKG 290 (461)
T ss_pred C--CCCCEEEEccc
Confidence 9 99999999996
No 8
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.95 E-value=2.7e-28 Score=202.94 Aligned_cols=85 Identities=31% Similarity=0.510 Sum_probs=75.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
++++.+++...++ +++||+|+||+||++|+++||++|++++|++|++||+|||+|||||||||||+ +|+++++|
T Consensus 211 ~~~~~~~~~~~~~---~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~g-- 284 (459)
T PRK06931 211 YFENFIEDVESGV---RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAG-- 284 (459)
T ss_pred HHHHHHHhhhcCC---CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcC--
Confidence 3455554321123 68999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 285 v~PDivt~gK~ 295 (459)
T PRK06931 285 IEPDIIVMSKA 295 (459)
T ss_pred CCCCEEEeccc
Confidence 99999999996
No 9
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.95 E-value=4.1e-28 Score=202.21 Aligned_cols=87 Identities=33% Similarity=0.548 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
.+.+++++++...++ ++|||+|+||+||++|+++||++|++++|++|++||+|||+|||||||||||+ ||+++++|
T Consensus 215 ~~~l~~~i~~~~~~~---~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~g 290 (464)
T PRK06938 215 LHYLENLLDDPESGV---VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAG 290 (464)
T ss_pred HHHHHHHHHhhccCC---CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhcC
Confidence 456777887542122 58999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 291 --v~PDiv~~gKg 301 (464)
T PRK06938 291 --IIPDVVVLSKA 301 (464)
T ss_pred --CCCCEEEeecc
Confidence 99999999996
No 10
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.95 E-value=2.7e-28 Score=203.41 Aligned_cols=83 Identities=28% Similarity=0.398 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
+.++++++++ + +++||+|+|| +||++|++++|++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 202 ~~le~~~~~~---~---~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~~~g 274 (466)
T PRK07030 202 AHMEQTLAEH---H---DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACEQAG 274 (466)
T ss_pred HHHHHHHHhC---C---CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHHhcC
Confidence 4567778754 3 7999999999 6999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 275 --v~PDiv~~gKg 285 (466)
T PRK07030 275 --IRPDFLCLSKA 285 (466)
T ss_pred --CCCCEEeeehh
Confidence 99999999996
No 11
>PRK07678 aminotransferase; Validated
Probab=99.95 E-value=4.2e-28 Score=201.05 Aligned_cols=83 Identities=29% Similarity=0.548 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
++++++++. ++ +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|++|++|
T Consensus 201 ~l~~~~~~~--~~---~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~g-- 272 (451)
T PRK07678 201 EIDRVMTWE--LS---ETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYG-- 272 (451)
T ss_pred HHHHHHHhc--CC---CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcC--
Confidence 467777643 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 273 v~PDivt~gK~ 283 (451)
T PRK07678 273 VKPDIITMAKG 283 (451)
T ss_pred CCCCEEEeecc
Confidence 99999999995
No 12
>KOG1401|consensus
Probab=99.95 E-value=8.1e-28 Score=198.40 Aligned_cols=101 Identities=32% Similarity=0.451 Sum_probs=93.8
Q ss_pred cccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628 5 VLTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA 61 (114)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~ 61 (114)
-+.+|+|||+...+++. .+++++++++|. ++|||+|+||+||+||+.|+.+
T Consensus 153 af~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~------~~IaAVIvEPiqGaGG~~p~~p 226 (433)
T KOG1401|consen 153 AFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK------GEIAAVIVEPIQGAGGIIPADP 226 (433)
T ss_pred EEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC------CceEEEEEecccCCCCcccCCH
Confidence 46789999999888732 357899999986 7999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+|++.||++|+++|+++|+|||||||||+|. .|++++++ ++|||+|+||.
T Consensus 227 eFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-~~a~e~~~--~~PDI~t~aK~ 276 (433)
T KOG1401|consen 227 EFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-GWAQEYFG--VTPDITTVAKP 276 (433)
T ss_pred HHHHHHHHHHhhcCceEEeehhhhCccccch-HHHHHHhC--cCCcceeehhh
Confidence 9999999999999999999999999999998 99999999 99999999994
No 13
>PRK07481 hypothetical protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=197.60 Aligned_cols=88 Identities=35% Similarity=0.563 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628 19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
....+++|+.++.. ++ ++|||||+||+||++|+++|+++|++++|++|++||++||+|||||||||||+ +|+++
T Consensus 196 ~~~~~~le~~i~~~--~~---~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~ 269 (449)
T PRK07481 196 RICARLLEREIAFQ--GP---DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSR 269 (449)
T ss_pred HHHHHHHHHHHHhc--CC---CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch-hhHhh
Confidence 34456677777643 24 79999999999999999999999999999999999999999999999999998 99999
Q ss_pred hcCCCCCcCEEEeecC
Q psy1628 99 LQGDDIIPDIVTVVWN 114 (114)
Q Consensus 99 ~~g~~v~PDivt~gK~ 114 (114)
++| ++|||+|+||+
T Consensus 270 ~~g--v~PDiv~~gKg 283 (449)
T PRK07481 270 GWG--VKPDIMCLAKG 283 (449)
T ss_pred hcC--CCCCEEEEeec
Confidence 999 99999999996
No 14
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.94 E-value=2.2e-27 Score=190.11 Aligned_cols=72 Identities=43% Similarity=0.628 Sum_probs=68.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++|||+|+||+||++|+.+++++|++++|++|++||+++|+|||||||||||+ +|++++++ ++||++|+||+
T Consensus 176 ~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~g--v~PDiv~~gK~ 247 (339)
T PF00202_consen 176 DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYG--VDPDIVTFGKG 247 (339)
T ss_dssp GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHT--SSSSEEEEEGG
T ss_pred CcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceeccc--ccCcccccccc
Confidence 79999999999999999999999999999999999999999999999999998 99999999 99999999996
No 15
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.94 E-value=1.7e-27 Score=200.55 Aligned_cols=84 Identities=32% Similarity=0.504 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
..+|+++.+. ++ +++||||+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 247 ~~le~~l~~~--~~---~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-~~a~e~~g- 319 (504)
T PLN02760 247 DNLENLILKE--GP---ETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT-MFGCDKYN- 319 (504)
T ss_pred HHHHHHHHhc--CC---CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch-hhHHHhcC-
Confidence 3467766543 23 78999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 320 -v~PDivtlgK~ 330 (504)
T PLN02760 320 -IKPDLVSLAKA 330 (504)
T ss_pred -CCCcEEEeccc
Confidence 99999999996
No 16
>PRK07483 hypothetical protein; Provisional
Probab=99.94 E-value=2.4e-27 Score=196.30 Aligned_cols=84 Identities=30% Similarity=0.461 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQS-CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g-~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
+.+++.+.+. ++ +++||+|+||+|| ++|+++|+++|++++|++|++||++||+|||||||||||+ ||+++++|
T Consensus 186 ~~l~~~~~~~--~~---~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~g 259 (443)
T PRK07483 186 DELEAKILEL--GP---DTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEEDG 259 (443)
T ss_pred HHHHHHHHhc--CC---CceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhcC
Confidence 4566656543 24 7999999999999 5899999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 260 --v~PDiv~~gK~ 270 (443)
T PRK07483 260 --VAPDLVTIAKG 270 (443)
T ss_pred --CCCCeeeehhh
Confidence 99999999996
No 17
>PRK07480 putative aminotransferase; Validated
Probab=99.94 E-value=3.1e-27 Score=196.46 Aligned_cols=84 Identities=39% Similarity=0.592 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.+.+. ++ +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 206 ~~l~~~~~~~--~~---~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g- 278 (456)
T PRK07480 206 RQLEAKILEL--GA---DNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE-WFGSQHFG- 278 (456)
T ss_pred HHHHHHHHhc--CC---CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhhhhhcC-
Confidence 4555555443 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 279 -v~PDiv~~gK~ 289 (456)
T PRK07480 279 -IKPDLMTIAKG 289 (456)
T ss_pred -CCCCeeeeehh
Confidence 99999999995
No 18
>PRK12403 putative aminotransferase; Provisional
Probab=99.94 E-value=4.2e-27 Score=195.64 Aligned_cols=84 Identities=35% Similarity=0.563 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.+.+. ++ +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 209 ~~le~~~~~~--~~---~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~e~~g- 281 (460)
T PRK12403 209 LQLEEKILEL--GA---ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFG- 281 (460)
T ss_pred HHHHHHHHHh--CC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhhhhhcC-
Confidence 3455555543 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 282 -v~PDiv~~gK~ 292 (460)
T PRK12403 282 -FEPDTLSIAKG 292 (460)
T ss_pred -CCCCeEEEccc
Confidence 99999999996
No 19
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.94 E-value=5.2e-27 Score=194.31 Aligned_cols=83 Identities=29% Similarity=0.404 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.++++++++ + +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 213 ~~~~~~i~~~---~---~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g- 284 (443)
T PRK08297 213 AQARAAFERH---P---HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG- 284 (443)
T ss_pred HHHHHHHHhC---C---CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch-HHHHHhcC-
Confidence 3456777764 3 89999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 285 -v~PDiv~~gK~ 295 (443)
T PRK08297 285 -VRPDIVAFGKK 295 (443)
T ss_pred -CCCCEEEeccc
Confidence 99999999995
No 20
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.94 E-value=6.9e-27 Score=194.36 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
+.++++++++ + +++||+|+|| +||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 211 ~~l~~~l~~~---~---~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~-~~a~~~~g 283 (460)
T PRK06916 211 EELEELLKEK---H---EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK-MFACEHEN 283 (460)
T ss_pred HHHHHHHHhC---C---CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch-hhHHHhcC
Confidence 4567778754 3 7999999999 6999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 284 --v~PDiv~~gK~ 294 (460)
T PRK06916 284 --VTPDIMTAGKG 294 (460)
T ss_pred --CCCCeeeeehh
Confidence 99999999995
No 21
>PRK06105 aminotransferase; Provisional
Probab=99.94 E-value=1.3e-26 Score=192.66 Aligned_cols=85 Identities=33% Similarity=0.519 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
.+.+|+++++. ++ +++||+|+||+||++|++++|++|++++|++|++||++||+|||||||||||+ +|++++++
T Consensus 204 ~~~le~~~~~~--~~---~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~ 277 (460)
T PRK06105 204 ANELEALILAE--GP---DTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG 277 (460)
T ss_pred HHHHHHHHHHc--CC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch-hhhHHhcC
Confidence 35678888653 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 278 --v~PDi~~~gK~ 288 (460)
T PRK06105 278 --IKPDILVMSKQ 288 (460)
T ss_pred --CCCCeeeeecc
Confidence 99999999996
No 22
>PRK07036 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=193.13 Aligned_cols=84 Identities=36% Similarity=0.534 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh-hcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ-LQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~-~~g 101 (114)
..+++.+.+. ++ +++||||+||+||++|+++||++|++++|++|++||+++|+|||||||||||+ +|+++ ++|
T Consensus 207 ~~~~~~i~~~--~~---~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~~g 280 (466)
T PRK07036 207 DEFEDKILSL--GA---DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH-FFASEAVFG 280 (466)
T ss_pred HHHHHHHHHc--CC---CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch-hhhhhhhcC
Confidence 3456666543 34 79999999999999999999999999999999999999999999999999998 99999 789
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 281 --v~PDivt~gK~ 291 (466)
T PRK07036 281 --IQPDIITFAKG 291 (466)
T ss_pred --CCCCEEEEccc
Confidence 99999999996
No 23
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.94 E-value=1e-26 Score=193.31 Aligned_cols=104 Identities=26% Similarity=0.387 Sum_probs=86.9
Q ss_pred cccccchhHHHHHHHHHH-----------------------HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628 5 VLTECIIGRYIILLAVVH-----------------------LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA 61 (114)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-----------------------~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~ 61 (114)
.+...+||++...+++.. +.+++.+++...++ +++||+|+||+||++|+.+||+
T Consensus 168 ~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~---~~vAavIvEpv~g~gG~~~p~~ 244 (442)
T TIGR03372 168 AASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTG---DDVAAIILEPIQGEGGVILPPE 244 (442)
T ss_pred EECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCC---CcEEEEEEeCccCCCCcccCCH
Confidence 456678888877766521 23344554311123 7899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+|+++++++|++||+++|+|||||||||||+ ||+++++| ++|||+|+||+
T Consensus 245 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~g--v~PDivt~gK~ 294 (442)
T TIGR03372 245 GYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEG--VQPDILCLAKA 294 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcC--CCCCeeeehhh
Confidence 9999999999999999999999999999998 99999999 99999999996
No 24
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.94 E-value=1.1e-26 Score=191.83 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
.+++.++++ + +++||+|+||+ ||++|+++||++|+++++++|++||++||+|||+|||||||+ +|+++++|
T Consensus 195 ~l~~~i~~~---~---~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g- 266 (429)
T PRK06173 195 PLQDLLEQK---G---DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK-LFALEHAG- 266 (429)
T ss_pred HHHHHHHhC---C---CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc-chHHHhcC-
Confidence 356777654 2 79999999997 999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 267 -v~PDiv~~gK~ 277 (429)
T PRK06173 267 -VVPDIMCIGKA 277 (429)
T ss_pred -CCCCEEEeehh
Confidence 99999999996
No 25
>PRK06917 hypothetical protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=192.26 Aligned_cols=84 Identities=27% Similarity=0.433 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
+.+++.++++. + +++||+|+||+||+ ||+++||++|++++|++|++||+++|+|||+|||||||+ +|++++++
T Consensus 186 ~~le~~i~~~~--~---~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~-~~a~~~~g 259 (447)
T PRK06917 186 TELETAIERIG--A---EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA-MFAMEHWG 259 (447)
T ss_pred HHHHHHHHhcC--C---CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc-hhhHHhcC
Confidence 46777787652 3 68999999999995 789999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 260 --v~PDi~~~gK~ 270 (447)
T PRK06917 260 --VEPDIMTLGKG 270 (447)
T ss_pred --CCCCEEEeeeh
Confidence 99999999996
No 26
>PRK06062 hypothetical protein; Provisional
Probab=99.94 E-value=1.4e-26 Score=192.15 Aligned_cols=84 Identities=35% Similarity=0.614 Sum_probs=77.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.++++++.+ ++ +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 201 ~~le~~l~~~--~~---~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~~~~g- 273 (451)
T PRK06062 201 AHLERVIELE--GP---STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHFG- 273 (451)
T ss_pred HHHHHHHHhc--CC---CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH-HHHHHhcC-
Confidence 4577777653 23 78999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 274 -v~PDi~t~gK~ 284 (451)
T PRK06062 274 -VVPDLITFAKG 284 (451)
T ss_pred -CCCCeeeechh
Confidence 99999999996
No 27
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.94 E-value=1.6e-26 Score=192.61 Aligned_cols=104 Identities=26% Similarity=0.377 Sum_probs=87.9
Q ss_pred cccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628 5 VLTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA 61 (114)
Q Consensus 5 ~~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~ 61 (114)
.+..++||++...++.. .+.+++.+++....+ +++||+|+||+||++|+++||+
T Consensus 175 ~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~---~~iAavIvEpv~g~~G~~~pp~ 251 (459)
T PRK11522 175 ATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTG---DDVAAVILEPIQGEGGVILPPE 251 (459)
T ss_pred EecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccC---CcEEEEEEecccCCCCCccCCH
Confidence 35567888877666542 134566665421123 6899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+|+++++++|++||+++|+|||||||||||+ +|+++++| ++|||+|+||+
T Consensus 252 ~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~g--v~PDivt~gK~ 301 (459)
T PRK11522 252 GYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHEN--VQPDILCLAKA 301 (459)
T ss_pred HHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccC--CCCCEEEechh
Confidence 9999999999999999999999999999998 99999999 99999999996
No 28
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.93 E-value=2.7e-26 Score=202.65 Aligned_cols=90 Identities=21% Similarity=0.232 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHhcC--CCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccch
Q psy1628 19 AVVHLFFERIFLSAS--LYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWW 95 (114)
Q Consensus 19 ~~~~~~~e~~~~~~~--~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~ 95 (114)
..+.+++++.+++.. .++ ++|||+|+||+ ||+||+++|+++|++++|++|++||++||+|||+|||||||+ +|
T Consensus 563 ~~~~~~le~~l~~~~~~~~~---~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~-~f 638 (817)
T PLN02974 563 KAYRSYIEQQLDEYEASAKN---GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV-ES 638 (817)
T ss_pred HHHHHHHHHHHHhhccccCC---CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc-hh
Confidence 345578888887511 134 79999999995 899999999999999999999999999999999999999998 99
Q ss_pred hhhhcCCCCCcCEEEeecC
Q psy1628 96 AFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 96 ~~~~~g~~v~PDivt~gK~ 114 (114)
+++++| ++|||+|+||+
T Consensus 639 a~e~~g--v~PDIi~~gKg 655 (817)
T PLN02974 639 AWELLG--CKPDIACYAKL 655 (817)
T ss_pred hHHhcC--CCCCEEeeccc
Confidence 999999 99999999996
No 29
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.93 E-value=2.7e-26 Score=192.08 Aligned_cols=82 Identities=26% Similarity=0.393 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.++++++++. +++||+|+||+||++|+++|+++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 240 ~l~~~l~~~~------~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~-~fa~e~~g-- 310 (464)
T TIGR00699 240 EVEDLIKKWH------KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWN-- 310 (464)
T ss_pred HHHHHHHhcC------CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcc-hhHHHhcC--
Confidence 4677777642 68999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CC--cCEEEeecC
Q psy1628 104 II--PDIVTVVWN 114 (114)
Q Consensus 104 v~--PDivt~gK~ 114 (114)
++ |||+|+||+
T Consensus 311 v~~~PDi~t~gK~ 323 (464)
T TIGR00699 311 LDDPPDMVTFSKK 323 (464)
T ss_pred CCCCCCEEEehhh
Confidence 86 999999996
No 30
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.93 E-value=4.4e-26 Score=189.73 Aligned_cols=86 Identities=33% Similarity=0.565 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.+.++..++ +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 207 ~~le~~l~~~~~~~---~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g- 281 (457)
T PRK05639 207 DYLENYVFSHVVPP---DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEWFE- 281 (457)
T ss_pred HHHHHHHHHhhcCC---CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch-HHHHHhcC-
Confidence 45666665431123 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 282 -v~PDiv~~gK~ 292 (457)
T PRK05639 282 -VKPDLIIFGKG 292 (457)
T ss_pred -CCCCEEEechh
Confidence 99999999996
No 31
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.93 E-value=5e-26 Score=189.33 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.++++++++ +++||+|+||+||. |+.+||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 218 ~~l~~~i~~~-------~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~fa~e~~g- 287 (459)
T PRK06082 218 DYLEYVIEKE-------GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAYG- 287 (459)
T ss_pred HHHHHHHhcC-------CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHhHhhC-
Confidence 3467666542 58999999999997 58889999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 288 -v~PDiv~~gKg 298 (459)
T PRK06082 288 -IEPDILCIGKG 298 (459)
T ss_pred -CCCCEEEeccc
Confidence 99999999996
No 32
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.93 E-value=9.7e-26 Score=184.62 Aligned_cols=85 Identities=31% Similarity=0.529 Sum_probs=77.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.++++++++..++ +++||+|+||+||++|+++||++|+++++++|++||+++|+|||||||||||+ +|++++++
T Consensus 180 ~l~~~~~~~~~~~---~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~~~~~-- 253 (412)
T TIGR02407 180 YFEKLLEDSSSGV---DLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG-- 253 (412)
T ss_pred HHHHHHHhccCCC---CceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hHHhcccC--
Confidence 4677777653223 58999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
+.||++++||+
T Consensus 254 v~PDi~~~~K~ 264 (412)
T TIGR02407 254 IEPDIVCLSKS 264 (412)
T ss_pred CCCCEEEechh
Confidence 99999999996
No 33
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.93 E-value=1.2e-25 Score=185.70 Aligned_cols=85 Identities=33% Similarity=0.524 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
++++.+++....+ +++||+|+||+||++|+.+||++|++++|++|++||++||+|||||||||||+ +|++++++
T Consensus 192 ~~~~~~~~~~~~~---~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g-- 265 (442)
T TIGR00709 192 YFENFIEDVESGV---DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAG-- 265 (442)
T ss_pred HHHHHHHhhccCC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcC--
Confidence 4555554321123 68999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 266 v~PDiv~~gK~ 276 (442)
T TIGR00709 266 IEPDFVVMSKA 276 (442)
T ss_pred CCCcEEEEccc
Confidence 99999999996
No 34
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.93 E-value=7.9e-26 Score=186.24 Aligned_cols=82 Identities=32% Similarity=0.448 Sum_probs=76.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.+++.++++ + +++||+|+||+||++|+++||++|+++++++|++||++||+|||||||||||+ +|+++++|
T Consensus 207 ~~~~~~~~~---~---~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~a~~~~g-- 277 (431)
T TIGR03251 207 QARAAFAER---P---HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG-- 277 (431)
T ss_pred HHHHHHHhC---C---CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-HHHHHhcC--
Confidence 456677654 3 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 278 v~PDi~~~gK~ 288 (431)
T TIGR03251 278 VQPDIVAFGKK 288 (431)
T ss_pred CCCCEEEeccc
Confidence 99999999995
No 35
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.92 E-value=1.9e-25 Score=184.97 Aligned_cols=85 Identities=29% Similarity=0.432 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
.+.+|+.++.+ ++ +++||+|+||++|++|+++|+++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus 201 ~~~le~~l~~~--~~---~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g 274 (442)
T PRK13360 201 ADELERLVTLH--DA---STIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-PFAAQYFG 274 (442)
T ss_pred HHHHHHHHHhc--CC---CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcC
Confidence 34677788754 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 275 --v~PDivt~gK~ 285 (442)
T PRK13360 275 --VTPDLLTCAKG 285 (442)
T ss_pred --CCCceeeeeec
Confidence 99999999996
No 36
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.92 E-value=1.5e-25 Score=184.89 Aligned_cols=72 Identities=38% Similarity=0.682 Sum_probs=70.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+++||+|+||+||++|+++|+++|++++|++|++||+++|+|||||||||||+ +|+++++| ++||++|+||+
T Consensus 218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~-~fa~~~~g--v~PDiv~~gK~ 289 (443)
T PRK06058 218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEG--IVPDLITTAKG 289 (443)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh-hhHHHhcC--CCCCEEEEccc
Confidence 78999999999999999999999999999999999999999999999999998 99999999 99999999996
No 37
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.92 E-value=1.7e-25 Score=184.36 Aligned_cols=72 Identities=28% Similarity=0.392 Sum_probs=69.9
Q ss_pred CceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+++||+|+||+ ||++|+.+|+++|++++|++|++||++||+|||||||||||+ +|+++++| ++|||+|+||+
T Consensus 199 ~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g--v~PDi~t~gK~ 271 (422)
T PRK05630 199 ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAAG--VTPDIMCVGKA 271 (422)
T ss_pred hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhcC--CCCCeeeeech
Confidence 58999999996 999999999999999999999999999999999999999998 99999999 99999999996
No 38
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.92 E-value=2.9e-25 Score=182.21 Aligned_cols=86 Identities=31% Similarity=0.537 Sum_probs=77.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++..++ +++||+|+||+||++|+++++++|+++++++|++||+++|+|||+|||||||+ +|++++++
T Consensus 183 ~~l~~~l~~~~~~~---~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~- 257 (425)
T PRK09264 183 AYLEKLLEDSSSGV---DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAG- 257 (425)
T ss_pred HHHHHHHHhccCCC---CceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcC-
Confidence 35677776642122 58999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
+.||++|+||+
T Consensus 258 -v~PDi~t~~K~ 268 (425)
T PRK09264 258 -ITPDIVTLSKS 268 (425)
T ss_pred -CCCCEEEeccc
Confidence 99999999996
No 39
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.92 E-value=3.6e-25 Score=183.46 Aligned_cols=84 Identities=29% Similarity=0.448 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.++++++.+ ++ +++||+|+||+||++|+++|+++|+++++++|++||++||+|||||||||||+ +|++++++
T Consensus 205 ~~l~~~i~~~--~~---~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~~~~~~g- 277 (445)
T PRK09221 205 DDLERLVALH--DA---STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-AFAAERFG- 277 (445)
T ss_pred HHHHHHHHhc--CC---CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch-hhHHHhcC-
Confidence 5677888764 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 278 -v~PDi~~~gK~ 288 (445)
T PRK09221 278 -VTPDIITFAKG 288 (445)
T ss_pred -CCCCEEEeccc
Confidence 99999999996
No 40
>PRK06148 hypothetical protein; Provisional
Probab=99.92 E-value=4.5e-25 Score=198.00 Aligned_cols=87 Identities=55% Similarity=0.906 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++.....+ +++||||+||+||++|+++||++|++++|++|++||+++|+|||||||||||+.||+++++|
T Consensus 769 ~~l~~~i~~~~~~~---~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~g- 844 (1013)
T PRK06148 769 ESVAEQIAAMAAKG---RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQG- 844 (1013)
T ss_pred HHHHHHHHhhhccC---CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcC-
Confidence 34555554311123 78999999999999999999999999999999999999999999999999995489999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++|||+|+||+
T Consensus 845 -v~PDivt~gK~ 855 (1013)
T PRK06148 845 -VVPDIVTMGKP 855 (1013)
T ss_pred -CCcceeeeccc
Confidence 99999999996
No 41
>KOG1402|consensus
Probab=99.92 E-value=1.8e-25 Score=181.89 Aligned_cols=80 Identities=31% Similarity=0.468 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.+|..|++ .++||+|+||+||++|++.||++||+++|+||++|++++|+||||||++|||+ ||+.++-.
T Consensus 198 ale~~l~~--------~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~en-- 266 (427)
T KOG1402|consen 198 ALEVALKS--------PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYEN-- 266 (427)
T ss_pred HHHHHhcC--------CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhh--
Confidence 46666655 59999999999999999999999999999999999999999999999999998 99999988
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++||++.+||+
T Consensus 267 v~PDivilgKa 277 (427)
T KOG1402|consen 267 VRPDIVILGKA 277 (427)
T ss_pred cCCCeEEEecc
Confidence 99999999995
No 42
>KOG1404|consensus
Probab=99.92 E-value=1.3e-25 Score=185.08 Aligned_cols=88 Identities=42% Similarity=0.723 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628 19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
+.+-+.+|..+... .+ +.|||+|+||+||.||++.+|++||++++++||++|.++|+|||||||||||. ||+||
T Consensus 195 d~~a~~l~d~i~~~--~~---~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~-~wgfe 268 (442)
T KOG1404|consen 195 DRYAKELEDLILYD--GP---ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH-MWGFE 268 (442)
T ss_pred HHHHHHHHHHHHhc--CC---CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc-ccccc
Confidence 34455666666543 45 78999999999999999999999999999999999999999999999999996 99999
Q ss_pred hcCCCCCcCEEEeecC
Q psy1628 99 LQGDDIIPDIVTVVWN 114 (114)
Q Consensus 99 ~~g~~v~PDivt~gK~ 114 (114)
.++ +.|||+||+|+
T Consensus 269 ~h~--v~PDIvTmAKg 282 (442)
T KOG1404|consen 269 SHG--VVPDIVTMAKG 282 (442)
T ss_pred ccC--CCccHHHHHhh
Confidence 999 99999999996
No 43
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.91 E-value=1e-24 Score=180.29 Aligned_cols=82 Identities=32% Similarity=0.478 Sum_probs=75.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
.+++.++++ + +++||+|+||+ +|++|+.+++++|+++++++|++||++||+|||+|||||||+ +|+++++|
T Consensus 193 ~l~~~l~~~---~---~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~-~fa~~~~g- 264 (428)
T PRK07986 193 PFARLMAAH---R---HEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFACEHAG- 264 (428)
T ss_pred HHHHHHHhC---C---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC-eeeecccC-
Confidence 457777654 2 79999999996 999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 265 -v~PDi~t~gK~ 275 (428)
T PRK07986 265 -IAPDILCLGKA 275 (428)
T ss_pred -CCCCEEEechh
Confidence 99999999996
No 44
>PRK06541 hypothetical protein; Provisional
Probab=99.91 E-value=2.3e-24 Score=179.40 Aligned_cols=84 Identities=30% Similarity=0.421 Sum_probs=77.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++ ++ +++||+|+||+|+.+|++++|++|+++++++|++||+++|+|||+|||||||+ +|+++++|
T Consensus 208 ~~l~~~l~~~--~~---~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~-~~a~~~~g- 280 (460)
T PRK06541 208 DRIEEAIEFE--GP---DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERFG- 280 (460)
T ss_pred HHHHHHHHhc--CC---CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-hhhhhhcC-
Confidence 4577777653 23 79999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 281 -v~PDivt~gK~ 291 (460)
T PRK06541 281 -YVPDIITCAKG 291 (460)
T ss_pred -CCCCEEEeccc
Confidence 99999999996
No 45
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.91 E-value=4.4e-24 Score=176.82 Aligned_cols=86 Identities=24% Similarity=0.422 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g 101 (114)
.+.++++++++. .+ +++||+|+||+||++|+++||++|+++++++|++||+++|+|||+|||||||+ +|+++++|
T Consensus 192 ~~~~~~~~~~~~-~~---~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~-~~a~~~~g 266 (445)
T PRK08593 192 LAPLKEMFEKYL-PA---DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFN 266 (445)
T ss_pred HHHHHHHHHhhc-CC---CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-HHHHHhcC
Confidence 355666666531 23 78999999999999999999999999999999999999999999999999998 99999999
Q ss_pred CCCCcCEEEeecC
Q psy1628 102 DDIIPDIVTVVWN 114 (114)
Q Consensus 102 ~~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 267 --v~pDi~t~gK~ 277 (445)
T PRK08593 267 --ITPDLMSFGKS 277 (445)
T ss_pred --CCCCEeeeccc
Confidence 99999999996
No 46
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.91 E-value=2e-24 Score=175.54 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=69.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+++||+|+||+||++|+.+++++|++++|++|++||+++|+||||||| |||+ +|++++++ ++||++|+||+
T Consensus 161 ~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~g--v~PDiv~~gK~ 231 (364)
T PRK04013 161 KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYK--VEPDIVTMGKG 231 (364)
T ss_pred CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcC--CCCCEEEeccc
Confidence 589999999999999999999999999999999999999999999999 9998 99999999 99999999996
No 47
>PRK06149 hypothetical protein; Provisional
Probab=99.90 E-value=3.6e-24 Score=191.29 Aligned_cols=73 Identities=47% Similarity=0.893 Sum_probs=70.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+++||||+||+||++|++++|++|+++++++|++||+++|+|||||||||||+.+|+++++| ++|||+|+||+
T Consensus 743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~g--v~PDivt~gK~ 815 (972)
T PRK06149 743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG--VVPDIITMAKG 815 (972)
T ss_pred CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcC--CCCCEEEeccc
Confidence 79999999999999999999999999999999999999999999999999997467999999 99999999996
No 48
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.90 E-value=4.2e-24 Score=175.73 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=74.9
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++. +++||+|+||+||++|+++|+++|++++|++|++||++||+||||||| |||. +|+++++|
T Consensus 188 ~~l~~~l~~~~------~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~-~~a~~~~g- 258 (428)
T PRK12389 188 EALKEALDKWG------DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY-GGAQDLLG- 258 (428)
T ss_pred HHHHHHHHhcC------CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc-chhhHHhC-
Confidence 35567776542 789999999999999999999999999999999999999999999999 9997 78889999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 259 -v~PDivt~gK~ 269 (428)
T PRK12389 259 -VEPDLTALGKI 269 (428)
T ss_pred -CCCCeeeechh
Confidence 99999999996
No 49
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.90 E-value=3.5e-24 Score=174.82 Aligned_cols=72 Identities=33% Similarity=0.526 Sum_probs=70.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++|+|+||+++++|+++||++|+++++++|++||+++|+|||||||||||+ +|++++++ ++||++|+||+
T Consensus 178 ~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~-~~a~~~~g--v~PDi~t~gK~ 249 (395)
T PRK03715 178 DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSG--IEPDIMTLGKG 249 (395)
T ss_pred CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc-hhhHhhcC--CCCceeeehhh
Confidence 57999999999999999999999999999999999999999999999999998 99999999 99999999996
No 50
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.90 E-value=8.7e-24 Score=173.28 Aligned_cols=84 Identities=35% Similarity=0.612 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.+++++++.. .+ +++||+|+||++|++|+++|+++|+++++++|++||+++|+|||+|||||+|+ +|++++++
T Consensus 194 ~l~~~~~~~~-~~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~-~~~~~~~g-- 266 (433)
T PRK08117 194 DLESLFKHQV-TP---EEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE-WFAAQTFG-- 266 (433)
T ss_pred HHHHHHHhcc-CC---CcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc-chhHhhcC--
Confidence 4667776521 23 78999999999999999999999999999999999999999999999999998 88889999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 267 v~pDi~t~sK~ 277 (433)
T PRK08117 267 VVPDIMTIAKG 277 (433)
T ss_pred CCCCEeehhhh
Confidence 99999999996
No 51
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.90 E-value=1.2e-23 Score=172.15 Aligned_cols=84 Identities=31% Similarity=0.469 Sum_probs=75.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.+++.+.... ++ +++||+|+||+||++|+.+++++|+++++++|++||+++|+|||+|||||+|+ +|++++++
T Consensus 184 ~~~~~~~~~~-~~---~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~-- 256 (420)
T TIGR00700 184 AARAIFVIDV-GA---NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEG-- 256 (420)
T ss_pred HHHHHHHhhc-CC---CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcC--
Confidence 4555554221 23 79999999999999999999999999999999999999999999999999998 89999998
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
+.||++++||+
T Consensus 257 ~~pDi~~lsK~ 267 (420)
T TIGR00700 257 PEPDLITTAKS 267 (420)
T ss_pred CCCCEEEeecc
Confidence 99999999996
No 52
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.90 E-value=9.7e-24 Score=172.55 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~ 100 (114)
.+.+++.++++ + +++||+|+|| +|+++|+.+++++|+++++++|++||+++|+|||+|||||||+ +|+++++
T Consensus 186 ~~~l~~~l~~~---~---~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~ 258 (423)
T PRK05964 186 LDALEALLEKH---A---GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-LFACEQA 258 (423)
T ss_pred HHHHHHHHHhC---C---CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhHHHhc
Confidence 45567777754 2 7999999999 6999999999999999999999999999999999999999998 8999999
Q ss_pred CCCCCcCEEEeecC
Q psy1628 101 GDDIIPDIVTVVWN 114 (114)
Q Consensus 101 g~~v~PDivt~gK~ 114 (114)
+ ++||++++||+
T Consensus 259 ~--v~pDi~~~~K~ 270 (423)
T PRK05964 259 G--VSPDIMCLSKG 270 (423)
T ss_pred C--CCCCeeeeehh
Confidence 9 99999999996
No 53
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.89 E-value=2.1e-23 Score=174.79 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.++++++++. +++||+|+||+++++|+++|+++|++++|++|++||++||+|||+||| |+|. +|+++++|
T Consensus 234 ~~l~~~l~~~~------~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-~ga~~~~g- 304 (474)
T PLN02482 234 EAVKKLFEANK------GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-GGAQEYFG- 304 (474)
T ss_pred HHHHHHHHhCC------CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc-chHhHHhC-
Confidence 46777887652 799999999999999999999999999999999999999999999999 9998 89999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 305 -v~PDi~t~gK~ 315 (474)
T PLN02482 305 -ITPDLTTLGKV 315 (474)
T ss_pred -CCCCEEEecch
Confidence 99999999995
No 54
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.89 E-value=3.4e-23 Score=170.00 Aligned_cols=84 Identities=29% Similarity=0.486 Sum_probs=76.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.+++++++.. ++ +++||+|+||+||++|+.+++++|+++++++|++||+++|+|||+|||||+|+ +|++++++
T Consensus 185 ~l~~~~~~~~-~~---~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~-- 257 (421)
T PRK06777 185 SVERLFKADI-AP---DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYD-- 257 (421)
T ss_pred HHHHHHHhcc-CC---CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcC--
Confidence 4667776421 23 78999999999999999999999999999999999999999999999999998 89999998
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 258 ~~pDiv~~sK~ 268 (421)
T PRK06777 258 VKPDLITMAKS 268 (421)
T ss_pred CCCCEEeeehh
Confidence 99999999996
No 55
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.89 E-value=5.2e-24 Score=177.15 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=82.1
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccc
Q psy1628 4 PVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEV 83 (114)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV 83 (114)
|++++=+.--++.+-=+-.+.++++|+++. ++|||||+||++|+.|+++|.++|++.||++|++||+|||+|||
T Consensus 169 ~Gvp~~~a~~ti~~~yND~~al~~~~~~~g------~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV 242 (432)
T COG0001 169 PGVPADVAKHTLVLPYNDLEALEEAFEEYG------DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV 242 (432)
T ss_pred CCCChhhhccEEEecCCCHHHHHHHHHHcC------CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence 444444444444443334467888998863 89999999999999999999999999999999999999999999
Q ss_pred cccccccCccchhhhhcCCCCCcCEEEeec
Q psy1628 84 QVGFGRVGTHWWAFQLQGDDIIPDIVTVVW 113 (114)
Q Consensus 84 ~tGfgRtG~~~~~~~~~g~~v~PDivt~gK 113 (114)
+||| |... ..++++|| ++|||+|+||
T Consensus 243 iTGF-R~~~-gGaq~~~g--i~PDlttlGK 268 (432)
T COG0001 243 ITGF-RVAL-GGAQGYYG--VEPDLTTLGK 268 (432)
T ss_pred hhhc-ccCC-cccccccC--cCcchhhhhh
Confidence 9999 5553 34677899 9999999999
No 56
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.89 E-value=3.8e-23 Score=170.36 Aligned_cols=82 Identities=27% Similarity=0.411 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
.+++.++++ + +++||||+||+ |++||+.+++++|+++++++|++||+++|+|||+|||||||+ +|++++++
T Consensus 196 ~l~~~l~~~---~---~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~-~~~~~~~~- 267 (427)
T TIGR00508 196 PLAKLMELH---S---DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK-LFACEHAG- 267 (427)
T ss_pred HHHHHHHhc---C---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-cchhhhcC-
Confidence 456677654 2 68999999997 999999999999999999999999999999999999999998 89999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 268 -v~pDi~~~gK~ 278 (427)
T TIGR00508 268 -VVPDILCVGKA 278 (427)
T ss_pred -CCCCEEEechh
Confidence 99999999995
No 57
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.89 E-value=4.8e-23 Score=170.71 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=76.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++. +++||+|+||+++.+|.++|+++|+++++++|++||+++|+|||+||| |+|. +|++++++
T Consensus 189 ~~l~~~l~~~~------~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~-~ga~~~~g- 259 (433)
T PRK00615 189 QIFQTVMNSLG------HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-GGAAAIYH- 259 (433)
T ss_pred HHHHHHHHhcC------CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH-hHHHHhcC-
Confidence 56788887653 689999999999999999999999999999999999999999999999 9998 99999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 260 -v~PDi~~~gK~ 270 (433)
T PRK00615 260 -VKPDITVYGKI 270 (433)
T ss_pred -CCCCeEEEccc
Confidence 99999999996
No 58
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.89 E-value=6.7e-23 Score=168.27 Aligned_cols=85 Identities=29% Similarity=0.389 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.++++++++. ++ +++||+|+||+|+.+|+.++|++|+++++++|++||+++|+|||+|||||+|+ +|++++++
T Consensus 184 ~~l~~~~~~~~-~~---~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~- 257 (421)
T PRK09792 184 DAIERLFKSDI-EA---KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYA- 257 (421)
T ss_pred HHHHHHHHhcc-CC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcC-
Confidence 46777776531 23 78999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 258 -~~pDi~t~gK~ 268 (421)
T PRK09792 258 -DKPDLMTMAKS 268 (421)
T ss_pred -CCCcEEEeehh
Confidence 99999999996
No 59
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.88 E-value=1e-22 Score=168.51 Aligned_cols=86 Identities=34% Similarity=0.560 Sum_probs=76.4
Q ss_pred HHHHHH-HHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628 22 HLFFER-IFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100 (114)
Q Consensus 22 ~~~~e~-~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~ 100 (114)
.+.+|+ +++++. ++ +++||+|+||++|++|+++|+++|+++++++|++||+++|+|||+|||||+|+ +|+++++
T Consensus 205 ~~~le~~~~~~~~-~~---~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~-~~a~~~~ 279 (441)
T PRK05769 205 LDFIEDYLFKKLV-PP---EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHF 279 (441)
T ss_pred HHHHHHHHHhhcc-CC---CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-eehhhcc
Confidence 345666 444321 23 79999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCcCEEEeecC
Q psy1628 101 GDDIIPDIVTVVWN 114 (114)
Q Consensus 101 g~~v~PDivt~gK~ 114 (114)
| ++||++|+||+
T Consensus 280 g--v~pDivt~~K~ 291 (441)
T PRK05769 280 G--VEPDIITLAKA 291 (441)
T ss_pred C--CCCCEEEEccc
Confidence 9 99999999996
No 60
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.88 E-value=8.5e-23 Score=165.64 Aligned_cols=72 Identities=29% Similarity=0.504 Sum_probs=69.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++|+|+||+++.+|+.+|+++|+++++++|++||+++|+|||+|||||+|+ +|++++++ ++||++|+||+
T Consensus 178 ~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~-~~a~~~~g--v~pDi~t~~K~ 249 (397)
T TIGR03246 178 DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDILTSAKA 249 (397)
T ss_pred cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc-chhhhhcC--CCCCEEEeehh
Confidence 57999999999999999999999999999999999999999999999999998 89999999 99999999996
No 61
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.88 E-value=1.3e-22 Score=167.31 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.++++++++. ++ +++||+|+||+++++|+.++|++|+++++++|++||+++|+|||+|||||+|+ +|++++++
T Consensus 185 ~l~~~~~~~~-~~---~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~g-- 257 (425)
T PRK07495 185 ALDKLFKADV-DP---QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHE-- 257 (425)
T ss_pred HHHHHHHhcc-CC---CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccC--
Confidence 3466665421 23 78999999999999999999999999999999999999999999999999998 89999999
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 258 v~pDi~tlsK~ 268 (425)
T PRK07495 258 VAADLTTMAKG 268 (425)
T ss_pred CCCCEEeehhh
Confidence 99999999996
No 62
>PLN00144 acetylornithine transaminase
Probab=99.87 E-value=1.6e-22 Score=164.08 Aligned_cols=99 Identities=29% Similarity=0.436 Sum_probs=85.7
Q ss_pred cccccchhHHHHHHHHHH-----------------------HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628 5 VLTECIIGRYIILLAVVH-----------------------LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA 61 (114)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-----------------------~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~ 61 (114)
.+..|+||++...+++.. +.+++.+. . +++||+|+||+|+.+|+.++++
T Consensus 116 ~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~---~~~aavi~eP~q~~gg~~~~~~ 187 (382)
T PLN00144 116 SFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQ-----K---GKTAAVFVEPVQGEGGIYPATK 187 (382)
T ss_pred EECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcC-----C---CCeEEEEEccccCCCCCccCCH
Confidence 467899999988877432 22333332 1 6899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+|+++++++|++||+++|+|||+|||||+|+ +|++++++ +.||++|+||+
T Consensus 188 ~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~~~~~~~~--~~PDi~t~sK~ 237 (382)
T PLN00144 188 EFLQGLRALCDEAGALLVFDEVQCGLGRTGY-LWAHEAYG--VEPDIMTLAKP 237 (382)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCccch-HhhhhhcC--CCCCEEEeccc
Confidence 9999999999999999999999999999998 89999999 99999999996
No 63
>PLN02624 ornithine-delta-aminotransferase
Probab=99.87 E-value=3.5e-22 Score=166.60 Aligned_cols=100 Identities=28% Similarity=0.440 Sum_probs=88.4
Q ss_pred ccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHH
Q psy1628 6 LTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPAN 62 (114)
Q Consensus 6 ~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~ 62 (114)
+..|+||++...+++. .+.+++.++++ + +++||+|+||+++.+|.+.|+++
T Consensus 172 ~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~---~~iaaiiiEpv~~~~G~v~p~~~ 245 (474)
T PLN02624 172 CCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEED---G---DRIAAFLFEPIQGEAGVVIPPDG 245 (474)
T ss_pred ECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhC---C---CCEEEEEECCccCCCCCcCCCHH
Confidence 4568888887776632 25678888764 2 78999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 63 YLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 63 fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
|+++++++|++||+++|+|||+|||||+|+ +|++++++ ++||++++||+
T Consensus 246 ~L~~l~~lc~~~gillI~DEv~tG~GrtG~-~~a~~~~~--i~pDiv~lsK~ 294 (474)
T PLN02624 246 YLKAVRELCSKHNVLMIADEIQTGLARTGK-MLACDWEE--VRPDVVILGKA 294 (474)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCcCcCcc-hhhHHhcC--CCCCEEEeccc
Confidence 999999999999999999999999999998 89988888 99999999996
No 64
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.87 E-value=6.1e-22 Score=163.67 Aligned_cols=72 Identities=33% Similarity=0.565 Sum_probs=70.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+++||+|+||+||++|+.+|+++|+++|+++|++||+++|+|||+|||||+|. +|++++++ ++||++++||+
T Consensus 218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~--v~pDi~t~sK~ 289 (451)
T PRK06918 218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFD--VVPDLITVSKS 289 (451)
T ss_pred CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcC--CCCCEEeeehh
Confidence 79999999999999999999999999999999999999999999999999998 89999998 99999999996
No 65
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.86 E-value=7.1e-22 Score=160.65 Aligned_cols=72 Identities=29% Similarity=0.501 Sum_probs=69.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++|+|+||+++.+|+++|+++|+++++++|++||+++|+|||+|||||+|+ +|++++++ +.||++++||+
T Consensus 182 ~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~-~~~~~~~~--v~pDi~t~sK~ 253 (406)
T PRK12381 182 DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDVLTTAKA 253 (406)
T ss_pred CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc-hhhhHhhC--CCCCEEEehhh
Confidence 58999999999999999999999999999999999999999999999999998 88989999 99999999996
No 66
>KOG1405|consensus
Probab=99.85 E-value=2e-21 Score=159.66 Aligned_cols=88 Identities=26% Similarity=0.359 Sum_probs=79.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
..+|.++.+++... ..+||+|+||+|++||-.+.+++|+++||++|++||+.+|+||||||-|-||+ +|++++|++
T Consensus 256 ~~Ve~li~~~~~k~---~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaHehw~l 331 (484)
T KOG1405|consen 256 AEVEDLIVKYRKKK---KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAHEHWNL 331 (484)
T ss_pred HHHHHHHHHHhhcC---CCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeeehhcCC
Confidence 35677777764222 58999999999999999999999999999999999999999999999999998 999999997
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
+-.||++|++|.
T Consensus 332 ~~PpD~vTFSKK 343 (484)
T KOG1405|consen 332 DSPPDVVTFSKK 343 (484)
T ss_pred CCCccceehhhh
Confidence 778999999994
No 67
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.85 E-value=5.4e-21 Score=158.50 Aligned_cols=85 Identities=35% Similarity=0.627 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+++++.+++.. .+ +++||+|+||+|+.+|+.+++++|+++++++|++||+++|+|||+|||||+|+ +|++++++
T Consensus 190 ~~~~~~l~~~~-~~---~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~-~~a~~~~~- 263 (443)
T PRK08360 190 EYIKEKFEGEV-YA---EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-WFAIEHFG- 263 (443)
T ss_pred HHHHHHHHhcc-CC---CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-chhhhhcC-
Confidence 35777776532 23 79999999999999999999999999999999999999999999999999998 88989888
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++|+||+
T Consensus 264 -~~pDiitlsK~ 274 (443)
T PRK08360 264 -VEPDIITLGKP 274 (443)
T ss_pred -CCCCEEEeccc
Confidence 99999999996
No 68
>PRK07046 aminotransferase; Validated
Probab=99.84 E-value=3.6e-21 Score=160.17 Aligned_cols=70 Identities=21% Similarity=0.242 Sum_probs=63.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+++||+|+||+|+++|+++|+++|++++|++|++||+|||+|||+| | |+|. ...++++| ++|||+|+||+
T Consensus 217 ~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~-Gg~~~~~g--v~PDi~t~gK~ 286 (453)
T PRK07046 217 GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGP-GGYTRAHG--LEPDFLVVGKP 286 (453)
T ss_pred CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCC-cchhHHhC--CCccceeehhh
Confidence 6899999999999999999999999999999999999999999999 6 4665 33456788 99999999995
No 69
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.84 E-value=6.6e-21 Score=156.45 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=85.1
Q ss_pred CcccccchhHHHHHHHHHHH-----------------------HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCC
Q psy1628 4 PVLTECIIGRYIILLAVVHL-----------------------FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPP 60 (114)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----------------------~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~ 60 (114)
-.+..++||+++..+++... .+++.++ + +++||+|+||++++||+++++
T Consensus 135 i~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~---~~~aavi~eP~~~~gg~~~~~ 206 (408)
T PRK04612 135 VTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA-----G---GDVAAVMLEPIQGEGGVMPAA 206 (408)
T ss_pred EEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC-----C---CCEEEEEECCccCCCCCcCCC
Confidence 34667899999887765321 1233331 2 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++|+++++++|++||+++|+|||+|||||+|. +|++++++ ++||++|+||+
T Consensus 207 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~a~~~~~--~~pdi~t~~K~ 257 (408)
T PRK04612 207 PGFLARVRALCDQHDALLVLDEIQCGMGRTGT-LFAHWQEQ--VTPDIVTLAKA 257 (408)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-hhhhhhcC--CCCCEEEEcch
Confidence 99999999999999999999999999999998 89988888 99999999996
No 70
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.83 E-value=1.6e-20 Score=151.71 Aligned_cols=100 Identities=25% Similarity=0.398 Sum_probs=86.5
Q ss_pred ccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHH
Q psy1628 6 LTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPAN 62 (114)
Q Consensus 6 ~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~ 62 (114)
...|+||+++..++.. -+.+|++++++. ++++++++||+++.+|...++++
T Consensus 134 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~~~avi~E~v~~~~G~~~~~~~ 207 (401)
T TIGR01885 134 AKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHG------PNVCAFIVEPIQGEAGVVVPDDG 207 (401)
T ss_pred ECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcC------CCEEEEEEeCccCCCCCccCCHH
Confidence 4557788877765542 256778887642 68999999999999999999999
Q ss_pred HHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 63 YLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 63 fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
|+++++++|++||+++|+|||+|||||+|+ +|++++++ +.||++|+||+
T Consensus 208 ~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~--~~~di~~~gK~ 256 (401)
T TIGR01885 208 YLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHEN--VKPDIVLLGKA 256 (401)
T ss_pred HHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcC--CCCCEEEeecc
Confidence 999999999999999999999999999998 88888888 99999999996
No 71
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.81 E-value=4.2e-20 Score=151.63 Aligned_cols=82 Identities=24% Similarity=0.270 Sum_probs=74.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++ + ++++++|+||++|++|.++++++|+++++++|++||+++|+|||+||| |+|. +|++++++
T Consensus 185 ~~l~~~i~~~---~---~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~-~~~~~~~~- 255 (426)
T PRK00062 185 EAVEELFEEY---G---DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL-GGAQGYYG- 255 (426)
T ss_pred HHHHHHHHhC---C---CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC-ccHHHHhC-
Confidence 4567777654 2 799999999999999999999999999999999999999999999999 9997 88888899
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
++||++++||+
T Consensus 256 -~~pDi~~~gK~ 266 (426)
T PRK00062 256 -VTPDLTTLGKI 266 (426)
T ss_pred -CCcchHhhhhH
Confidence 99999999995
No 72
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.80 E-value=7.4e-20 Score=148.71 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++. ++++|+|+||+++++|.++++++|+++++++|++||+++|+|||+||| |+|. +|++++++
T Consensus 183 ~~l~~~i~~~~------~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~-~~~~~~~~- 253 (423)
T TIGR00713 183 EALEEVFEEYG------EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL-GGAQEYFG- 253 (423)
T ss_pred HHHHHHHHHcC------CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCc-chhHHHhC-
Confidence 46777777642 689999999999999999999999999999999999999999999999 9997 88888898
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
+.||++|+||+
T Consensus 254 -~~pDi~t~sK~ 264 (423)
T TIGR00713 254 -VEPDLTTLGKI 264 (423)
T ss_pred -CCcchhhhhhh
Confidence 99999999995
No 73
>KOG1403|consensus
Probab=99.78 E-value=2.5e-20 Score=151.26 Aligned_cols=109 Identities=50% Similarity=0.743 Sum_probs=92.6
Q ss_pred CCCCcccccchhHHHHH-------HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q psy1628 1 VHVPVLTECIIGRYIIL-------LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA 73 (114)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~ 73 (114)
|||+--+.-+-|.+--. =+.|.+.+++++++..... ..+||+|.|..|+-||-+.||++|++.+.+..|.
T Consensus 165 VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g---~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~ 241 (452)
T KOG1403|consen 165 VHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKG---QGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRS 241 (452)
T ss_pred eEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcC---CcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhc
Confidence 45555555555543222 2578889999998764233 7899999999999999999999999999999999
Q ss_pred hCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 74 AGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 74 ~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
+|.++|+||||+||||.|+++|+||.|+ +.|||+||||.
T Consensus 242 aGGv~IaDEVQvGFGRvG~hyWafq~y~--fiPDIVtmgKp 280 (452)
T KOG1403|consen 242 AGGVCIADEVQVGFGRVGSHYWAFQTYN--FIPDIVTMGKP 280 (452)
T ss_pred CCCeEEeehhhhcccccchhhhhhhhhc--cccchheeccc
Confidence 9999999999999999999999999999 99999999995
No 74
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.78 E-value=3.1e-19 Score=143.47 Aligned_cols=72 Identities=39% Similarity=0.653 Sum_probs=69.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||+++.+|..+|+++|+++++++|++||+++|+||++|||||+|+ +|++++++ +.||++|+||+
T Consensus 182 ~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~--~~pDi~t~sK~ 253 (398)
T PRK03244 182 DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDG--VTPDVVTLAKG 253 (398)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch-HHhhhhhC--CCCCEEEEchh
Confidence 58999999999999999999999999999999999999999999999999998 88888888 99999999995
No 75
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.78 E-value=8.9e-19 Score=141.84 Aligned_cols=72 Identities=31% Similarity=0.514 Sum_probs=68.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||+++.+|+.+++++|+++++++|++||+++|+|||++||||+|+ ++++++++ +.||+.++||+
T Consensus 183 ~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~s~sK~ 254 (403)
T PRK05093 183 DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-LFAYMHYG--VTPDILTSAKA 254 (403)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcC--CCCCEEEeccc
Confidence 57999999999999999999999999999999999999999999999999998 78888888 99999999996
No 76
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.77 E-value=1.1e-18 Score=144.01 Aligned_cols=78 Identities=24% Similarity=0.304 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++ + +++||+|+||++|. .++++|+++++++|++||++||+|||+|||++++ +++.++++
T Consensus 175 ~~l~~~l~~~---~---~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~--~g~~~~~g- 241 (431)
T PRK06209 175 ASLEALFEDH---P---GRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM--RGAQKLYG- 241 (431)
T ss_pred HHHHHHHHhC---C---CCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc--chhhHHhC-
Confidence 4577778764 2 79999999999975 8899999999999999999999999999998765 33444688
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
+.||++|+||+
T Consensus 242 -v~PDi~t~gK~ 252 (431)
T PRK06209 242 -IVPDLSCFGKA 252 (431)
T ss_pred -CCcceeeehhh
Confidence 99999999996
No 77
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.77 E-value=1.1e-18 Score=139.05 Aligned_cols=72 Identities=38% Similarity=0.536 Sum_probs=68.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||+++.+|+.+++++|+++++++|++||+++|+|||++||||+|+ ++++++++ +.||++|+||+
T Consensus 166 ~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~~~~~~~--~~~di~t~sK~ 237 (377)
T PRK02936 166 EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT-LFAYEQFG--LDPDIVTVAKG 237 (377)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhhC--CCCcEEEEccc
Confidence 57999999999999999999999999999999999999999999999999998 88888888 99999999996
No 78
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.77 E-value=8.9e-19 Score=141.54 Aligned_cols=72 Identities=28% Similarity=0.510 Sum_probs=68.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||+++.+|...++++|+++++++|++||+++|+||+++||||+|+ +|+++.++ +.||++++||+
T Consensus 185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~--~~pdi~~~sK~ 256 (396)
T PRK04073 185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK-LFACDWDN--VTPDMYILGKA 256 (396)
T ss_pred cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-HHHhhhcC--CCCCEEEeccc
Confidence 57899999999999999999999999999999999999999999999999998 88888888 99999999995
No 79
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=139.90 Aligned_cols=72 Identities=31% Similarity=0.515 Sum_probs=68.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
.+++|+++||+++.+|+.+++++|+++|+++|++||+++|+|||++||||+|+ +|++++++ +.||++++||+
T Consensus 174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~ 245 (389)
T PRK01278 174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAG--VTPDIMAVAKG 245 (389)
T ss_pred CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-ceeecccC--CCCCEEEEehh
Confidence 48999999999999999999999999999999999999999999999999998 88888888 99999999996
No 80
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.76 E-value=2.5e-18 Score=140.82 Aligned_cols=84 Identities=30% Similarity=0.438 Sum_probs=75.5
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~ 103 (114)
.+++++++.. ++ +++||+|+||+++++|.++++++|+++++++|++||+++|.||+++||||+|. ++++++++
T Consensus 186 ~l~~~l~~~~-~~---~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~-- 258 (425)
T PRK08088 186 SIERIFKNDA-AP---EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMG-- 258 (425)
T ss_pred HHHHHHHhcc-CC---CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcC--
Confidence 4677775321 23 79999999999999999999999999999999999999999999999999998 88888888
Q ss_pred CCcCEEEeecC
Q psy1628 104 IIPDIVTVVWN 114 (114)
Q Consensus 104 v~PDivt~gK~ 114 (114)
+.||+.++||+
T Consensus 259 ~~pdi~s~sK~ 269 (425)
T PRK08088 259 VAADLTTFAKS 269 (425)
T ss_pred CCCCEEEEecc
Confidence 99999999996
No 81
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.74 E-value=6.6e-18 Score=135.86 Aligned_cols=72 Identities=33% Similarity=0.495 Sum_probs=68.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++|+++||+++.+|.+.++++|+++++++|++||+++|+||++|||||+|. +|+.++++ +.||++++||+
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~-~~~~~~~g--~~~D~~~~~K~ 257 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEG--IEADVTLIGKA 257 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch-HhHHhhcC--CCCCEEEeccc
Confidence 47899999999999999999999999999999999999999999999999998 78888888 99999999995
No 82
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.73 E-value=9.4e-18 Score=134.51 Aligned_cols=72 Identities=33% Similarity=0.568 Sum_probs=68.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||+++.+|+..++++|+++++++|++||+++|+|||++||||+|+ +|+.+.++ +.||++++||+
T Consensus 177 ~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~-~~~~~~~~--~~pd~~~~sK~ 248 (400)
T PTZ00125 177 PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK-LLAHDHEG--VKPDIVLLGKA 248 (400)
T ss_pred CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhHHHhcC--CCCCEEEEccc
Confidence 58999999999999999999999999999999999999999999999999998 88888888 99999999996
No 83
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.71 E-value=2.6e-17 Score=131.76 Aligned_cols=72 Identities=29% Similarity=0.477 Sum_probs=68.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||+++++|+++++++|+++++++|+++|+++|+||+++||||+|. +|.++.++ +.||++|+||+
T Consensus 164 ~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~ 235 (375)
T PRK04260 164 KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYG--IEPDIFTLAKG 235 (375)
T ss_pred CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhC--CCCCEEEeccc
Confidence 57899999999999999999999999999999999999999999999999998 88888888 99999999996
No 84
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.68 E-value=1.7e-16 Score=126.86 Aligned_cols=83 Identities=39% Similarity=0.602 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~ 102 (114)
+.+++.++++ + ++++++++||+++.+|...++++|+++++++|++||+++|+||+++||||+|. ++++++++
T Consensus 179 ~~l~~~l~~~---~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~-~~~~~~~~- 250 (413)
T cd00610 179 EALEEALEEH---P---EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFG- 250 (413)
T ss_pred HHHHHHHhcC---C---CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhhHhhcC-
Confidence 3556666554 2 68999999999999999999999999999999999999999999999999998 77888888
Q ss_pred CCCcCEEEeecC
Q psy1628 103 DIIPDIVTVVWN 114 (114)
Q Consensus 103 ~v~PDivt~gK~ 114 (114)
+.||++++||+
T Consensus 251 -~~~d~~t~sK~ 261 (413)
T cd00610 251 -VEPDIVTLGKG 261 (413)
T ss_pred -CCCCeEEEccc
Confidence 99999999995
No 85
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.68 E-value=1e-16 Score=127.97 Aligned_cols=72 Identities=33% Similarity=0.483 Sum_probs=68.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
++++++++||.++.+|+.+++++|+++++++|++||+++|+||+++||||+|+ +++++.++ +.||++++||+
T Consensus 181 ~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~ 252 (396)
T PRK02627 181 DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYG--IEPDIMTLAKG 252 (396)
T ss_pred CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcC--CCCCEEEEcch
Confidence 58999999999999999999999999999999999999999999999999997 88888888 99999999996
No 86
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.37 E-value=2.5e-12 Score=101.99 Aligned_cols=72 Identities=31% Similarity=0.513 Sum_probs=65.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~ 114 (114)
.++.++++||.++.+|..+++.+++++++++|+++|+++|.||+++||+++|. .+.++.++ +.||++++||+
T Consensus 169 ~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~--~~~d~~t~sK~ 240 (379)
T TIGR00707 169 DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYG--IEPDIITLAKG 240 (379)
T ss_pred hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcC--CCCCEEEEccc
Confidence 46789999999988898889999999999999999999999999999999997 66667778 99999999995
No 87
>PRK07505 hypothetical protein; Provisional
Probab=99.13 E-value=1.4e-10 Score=93.81 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=57.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc--ccccccCccchhhhhcCCCC-CcCEE----Eee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ--VGFGRVGTHWWAFQLQGDDI-IPDIV----TVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~--tGfgRtG~~~~~~~~~g~~v-~PDiv----t~g 112 (114)
+..++++.||.++.|++.+ +++++++|++||+++|+||++ +||||+|. +++.++++ + .||.+ ++|
T Consensus 179 ~~~~~vl~~p~~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~~~~~~--~~~~d~~i~~~s~s 250 (402)
T PRK07505 179 NKTVAYVADGVYSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYVRSELD--YRLNERTIIAASLG 250 (402)
T ss_pred CCCEEEEEecccccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-chHHHHcC--CCCCCCeEEEEech
Confidence 4579999999998876555 799999999999999999997 78999998 77788888 7 78865 688
Q ss_pred cC
Q psy1628 113 WN 114 (114)
Q Consensus 113 K~ 114 (114)
|+
T Consensus 251 K~ 252 (402)
T PRK07505 251 KA 252 (402)
T ss_pred hh
Confidence 84
No 88
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.11 E-value=2e-10 Score=93.72 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=57.1
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc--cccccCccchhhhhcCCCCCc----CEEEeecC
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV--GFGRVGTHWWAFQLQGDDIIP----DIVTVVWN 114 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t--GfgRtG~~~~~~~~~g~~v~P----Divt~gK~ 114 (114)
+...+++||+++.+|.+++ +++++++|++||+++|+||+++ ++|++|+ |+++++| ++| |++++|++
T Consensus 138 ~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~--g~~~~~g--~~p~~~~Div~~sls 209 (392)
T PLN03227 138 QRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR--GSLEHAG--LKPMVHAEIVTFSLE 209 (392)
T ss_pred CcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC--cHHHHcC--CCCCCCceEEEeech
Confidence 5678999999998887777 8899999999999999999998 4566775 6789999 999 99998853
No 89
>PLN02822 serine palmitoyltransferase
Probab=99.05 E-value=5.1e-10 Score=93.96 Aligned_cols=64 Identities=23% Similarity=0.242 Sum_probs=56.2
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc--cccccCccchhhhhcCCCC---CcCEEE--eecC
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV--GFGRVGTHWWAFQLQGDDI---IPDIVT--VVWN 114 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t--GfgRtG~~~~~~~~~g~~v---~PDivt--~gK~ 114 (114)
+++++|++.+..|.+.+ +++++++|++||+++|+||+++ .+|++|+ +..++++ + .||+++ |||+
T Consensus 247 ~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~--G~~e~~~--v~~~~~dii~~s~sKa 317 (481)
T PLN02822 247 RYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR--GLSEHFG--VPIEKIDIITAAMGHA 317 (481)
T ss_pred EEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--ChHHHcC--CCCCCCeEEEecchhh
Confidence 89999999998887777 7999999999999999999999 5688887 3678888 7 799999 6685
No 90
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.00 E-value=1.8e-09 Score=87.20 Aligned_cols=79 Identities=27% Similarity=0.354 Sum_probs=62.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ 100 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~ 100 (114)
+.++++++.. .+ +++.++++|++.+..|...+ +++++++|++||+++|+||+++ | ||++|. .+ .++.
T Consensus 165 ~~le~~l~~~--~~---~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~-g~-~~~~ 233 (407)
T PRK09064 165 AHLEELLAAA--DP---DRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGG-GI-AERD 233 (407)
T ss_pred HHHHHHHHhc--cC---CCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCC-Ch-HHhc
Confidence 3567777643 12 46889999999988787665 9999999999999999999998 7 589987 44 4556
Q ss_pred CCCC--CcCEE--EeecC
Q psy1628 101 GDDI--IPDIV--TVVWN 114 (114)
Q Consensus 101 g~~v--~PDiv--t~gK~ 114 (114)
+ + .||++ |+||+
T Consensus 234 ~--~~~~~div~~t~sKa 249 (407)
T PRK09064 234 G--LMDRIDIIEGTLAKA 249 (407)
T ss_pred C--CCCCCeEEEEecchh
Confidence 6 4 57998 89995
No 91
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.90 E-value=6.7e-09 Score=84.23 Aligned_cols=78 Identities=27% Similarity=0.352 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQG 101 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g 101 (114)
.+++.+++.. + ++++++++|++++..|...+ +++++++|+++|+++|+||+++ |+ |++|. .+ .++.+
T Consensus 165 ~l~~~l~~~~--~---~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~-g~-~~~~~ 233 (406)
T PRK13393 165 DLERKLSDLD--P---HRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG-GI-AEREG 233 (406)
T ss_pred HHHHHHHhcc--C---CCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-hhhcC
Confidence 4566665431 2 46789999999998887776 8999999999999999999998 88 89987 44 36666
Q ss_pred CCCC--cCEE--EeecC
Q psy1628 102 DDII--PDIV--TVVWN 114 (114)
Q Consensus 102 ~~v~--PDiv--t~gK~ 114 (114)
+. ||++ ++||+
T Consensus 234 --~~~~~~i~~~tlsKa 248 (406)
T PRK13393 234 --LADRLTIIEGTLAKA 248 (406)
T ss_pred --CCCCCeEEEEeCchh
Confidence 54 6887 88885
No 92
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=98.80 E-value=2.1e-08 Score=81.03 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQG 101 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g 101 (114)
.++++++... + +++.++++|++.+..|.+.+ +++++++|++||+++|+||+++ |+ |++|. .. .++.+
T Consensus 165 ~l~~~l~~~~--~---~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g~-~~~~~ 233 (402)
T TIGR01821 165 HLEKLLQSVD--P---NRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-GI-AERDG 233 (402)
T ss_pred HHHHHHHhcc--C---CCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-cc-chhcc
Confidence 5677776531 2 46789999999988887765 8999999999999999999999 53 66665 22 35555
Q ss_pred CCC--CcCEE--EeecC
Q psy1628 102 DDI--IPDIV--TVVWN 114 (114)
Q Consensus 102 ~~v--~PDiv--t~gK~ 114 (114)
+ .||++ |+||+
T Consensus 234 --~~~~~div~~t~sKa 248 (402)
T TIGR01821 234 --LMHRIDIIEGTLAKA 248 (402)
T ss_pred --CCCCCeEEEEechhh
Confidence 4 57888 88885
No 93
>PLN02955 8-amino-7-oxononanoate synthase
Probab=98.64 E-value=1.1e-07 Score=80.73 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchhhhhcC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWAFQLQG 101 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~~~~~g 101 (114)
.++++++++. ++.+.+++|++-+..|.+.| +++++++|++||+++|+||..+.+ |.+|. ...+++|
T Consensus 238 ~Le~~L~~~~------~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~--G~~e~~g 305 (476)
T PLN02955 238 HLNSLLSSCK------MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGG--GVAEEFN 305 (476)
T ss_pred HHHHHHHhCC------CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCC--cHHHHhC
Confidence 5677777653 45688999999887777666 999999999999999999999844 66665 4567888
Q ss_pred CCCCcCE----EEeecC
Q psy1628 102 DDIIPDI----VTVVWN 114 (114)
Q Consensus 102 ~~v~PDi----vt~gK~ 114 (114)
+.||+ .|+||+
T Consensus 306 --~~~di~ii~~TLsKA 320 (476)
T PLN02955 306 --CEADVDLCVGTLSKA 320 (476)
T ss_pred --CCCCCcEEEEeCccc
Confidence 88888 788885
No 94
>PRK07179 hypothetical protein; Provisional
Probab=98.59 E-value=2.3e-07 Score=75.19 Aligned_cols=65 Identities=25% Similarity=0.286 Sum_probs=50.5
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc--ccccCccchhhhhcCCCCC--cCEEEe--ec
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG--FGRVGTHWWAFQLQGDDII--PDIVTV--VW 113 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG--fgRtG~~~~~~~~~g~~v~--PDivt~--gK 113 (114)
+.+++++|++.+..|.+.+ +++++++|++||+++|+||+++. +|++|. .+ .+.++ +. +|+++. +|
T Consensus 181 ~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~--~~~~vdi~~~S~sK 251 (407)
T PRK07179 181 GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGA-GL-VAELG--LTSRVHFITASLAK 251 (407)
T ss_pred CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-ch-HHhcC--CCCCCCEEEeechH
Confidence 4678999999988887777 78999999999999999999984 355665 22 44566 64 488764 56
No 95
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.49 E-value=6e-07 Score=72.15 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ 100 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~ 100 (114)
+.+++.+++....+ .+...++++++.+..|.+.| ++++.++|+++|+++++||+|+ | ++++|. .+.. .+
T Consensus 128 ~~l~~~l~~~~~~~---~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~-g~~~-~~ 198 (370)
T PRK05937 128 DHLESLLESCRQRS---FGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGK-GFCH-SL 198 (370)
T ss_pred HHHHHHHHhhhccC---CCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chHH-hh
Confidence 35667776431111 23456889999888887776 8899999999999999999998 5 577775 3222 22
Q ss_pred C-CCCCcCEEEeecC
Q psy1628 101 G-DDIIPDIVTVVWN 114 (114)
Q Consensus 101 g-~~v~PDivt~gK~ 114 (114)
+ .++.+|+.++||.
T Consensus 199 ~~~~~~~~~~tlsK~ 213 (370)
T PRK05937 199 GYENFYAVLVTYSKA 213 (370)
T ss_pred CCCCCcEEEEechhh
Confidence 3 0134688999984
No 96
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.41 E-value=1.3e-06 Score=70.78 Aligned_cols=80 Identities=24% Similarity=0.245 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQG 101 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g 101 (114)
.+++.+++.. . ++..++++|+..+..|.+.+ +++++++|++||+++|+||+++ |+ |+.|. .+ .+..+
T Consensus 166 ~l~~~l~~~~--~---~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~ 234 (410)
T PRK13392 166 DLEEQLASVD--P---DRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGG-GI-AERDG 234 (410)
T ss_pred HHHHHHHhcc--C---CCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-ch-hhhcc
Confidence 3455555431 2 47789999999887787665 8999999999999999999999 65 67775 33 34444
Q ss_pred CCCCcCEE--EeecC
Q psy1628 102 DDIIPDIV--TVVWN 114 (114)
Q Consensus 102 ~~v~PDiv--t~gK~ 114 (114)
..-.+|++ +++|+
T Consensus 235 ~~~~~div~~tlsK~ 249 (410)
T PRK13392 235 LMDRIDMIQGTLAKA 249 (410)
T ss_pred CCCCCcEEEEEChHh
Confidence 11257887 88884
No 97
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.37 E-value=1.9e-06 Score=67.93 Aligned_cols=80 Identities=23% Similarity=0.167 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ 100 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~ 100 (114)
+.+++.+++.. ++.+.+++++++...|... .++++.++|++||+++|+||+++ | ++++|. .+ ....
T Consensus 156 ~~l~~~i~~~~------~~~~lvi~~~~~~~~G~~~----~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~-~~-~~~~ 223 (385)
T PRK05958 156 DALEALLAKWR------AGRALIVTESVFSMDGDLA----PLAELVALARRHGAWLLVDEAHGTGVLGPQGR-GL-AAEA 223 (385)
T ss_pred HHHHHHHHhcc------CCCeEEEEEecccCCCCcC----CHHHHHHHHHHhCCEEEEECcccccccCCCCC-ch-HHhh
Confidence 45666665531 3578899998887666433 38999999999999999999995 4 355665 22 2222
Q ss_pred CCCCCcC---EEEeecC
Q psy1628 101 GDDIIPD---IVTVVWN 114 (114)
Q Consensus 101 g~~v~PD---ivt~gK~ 114 (114)
+.+..|| +.+++|+
T Consensus 224 ~~~~~~~~i~~~s~sK~ 240 (385)
T PRK05958 224 GLAGEPDVILVGTLGKA 240 (385)
T ss_pred CCCCCCceEEEEechhh
Confidence 3224677 5666774
No 98
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.32 E-value=3.1e-06 Score=67.30 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc--ccccCccchhhhhcC
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG--FGRVGTHWWAFQLQG 101 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG--fgRtG~~~~~~~~~g 101 (114)
.+++.+.+.. . .+.++++++++++..|...+ ++++.++|++||+++|+||+++. ++++|. ....+++
T Consensus 151 ~l~~~l~~~~--~---~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~ 219 (385)
T TIGR01825 151 DLDRVLRENP--S---YGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFG 219 (385)
T ss_pred HHHHHHHhhc--c---CCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcC
Confidence 3566665531 1 46889999998887776544 68999999999999999999963 455554 2344555
Q ss_pred CCCCcC----EEEeecC
Q psy1628 102 DDIIPD----IVTVVWN 114 (114)
Q Consensus 102 ~~v~PD----ivt~gK~ 114 (114)
+.|| +.+++|+
T Consensus 220 --~~~~~~i~~~s~sK~ 234 (385)
T TIGR01825 220 --LEDKVDIQVGTLSKA 234 (385)
T ss_pred --CCcCCcEEEEeccHH
Confidence 5555 4677774
No 99
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.00 E-value=2.4e-05 Score=53.96 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=50.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.+++++++++.....|...+. +++.++|+++|+++|+||.+.++..... + ..... ..+|+++.|
T Consensus 91 ~~~~~v~~~~~~~~~g~~~~~----~~l~~~~~~~~~~li~D~a~~~~~~~~~-~--~~~~~--~~~d~~~~s 154 (170)
T cd01494 91 PNVALIVITPNTTSGGVLVPL----KEIRKIAKEYGILLLVDAASAGGASPAP-G--VLIPE--GGADVVTFS 154 (170)
T ss_pred CceEEEEEecCcCCCCeEcCH----HHHHHHHHHcCCEEEEeccccccccccc-c--ccccc--ccCCEEEEE
Confidence 689999999988877765543 8999999999999999999998866553 2 12222 568999988
No 100
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=97.88 E-value=5.9e-05 Score=59.84 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=48.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcCCCC--CcCEE--Eeec
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQGDDI--IPDIV--TVVW 113 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g~~v--~PDiv--t~gK 113 (114)
.++.+++.+++++..|. ...++++.++|++||+++|.||++. |+ +++|. +....++ + .+|++ +++|
T Consensus 173 ~~~~~v~~~~v~~~~G~----~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~~--~~~~~~i~~~S~sK 244 (397)
T PRK06939 173 ARHKLIATDGVFSMDGD----IAPLPEICDLADKYDALVMVDDSHAVGFVGENGR--GTVEHFG--VMDRVDIITGTLGK 244 (397)
T ss_pred CCCeEEEEecCcCCCCC----cCCHHHHHHHHHHhCCEEEEECcccccCcCCCCC--CHHHHcC--CCCCCcEEEEECHH
Confidence 37888998888876665 2348999999999999999999995 54 44553 2334455 4 46788 6677
Q ss_pred C
Q psy1628 114 N 114 (114)
Q Consensus 114 ~ 114 (114)
+
T Consensus 245 ~ 245 (397)
T PRK06939 245 A 245 (397)
T ss_pred H
Confidence 3
No 101
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=97.88 E-value=3.2e-05 Score=59.32 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=44.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~ 92 (114)
.++.++++++.....|. ..+.+.++++.++|+++|+++|+||+++++...+.
T Consensus 131 ~~~~~v~i~~~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~ 182 (350)
T cd00609 131 PKTKLLYLNNPNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDGE 182 (350)
T ss_pred ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc
Confidence 68999999996666675 45788999999999999999999999999876665
No 102
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=97.80 E-value=0.00013 Score=56.78 Aligned_cols=80 Identities=16% Similarity=0.186 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc-chhhhhcC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH-WWAFQLQG 101 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~-~~~~~~~g 101 (114)
+.+++.++++. . .+.++++++++....|... .++++.++|+++|+++|.||+++ +++.+.. ......++
T Consensus 133 ~~l~~~~~~~~--~---~~~~~v~~~~~~~~~G~~~----~~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~ 202 (360)
T TIGR00858 133 EHLERLLEKNR--G---ERRKLIVTDGVFSMDGDIA----PLPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFG 202 (360)
T ss_pred HHHHHHHHHcc--c---CCCeEEEEeCCccCCCCCc----CHHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcC
Confidence 35666665531 1 2578888888766555333 27899999999999999999997 4333320 11234456
Q ss_pred CCCCcC-----EEEeecC
Q psy1628 102 DDIIPD-----IVTVVWN 114 (114)
Q Consensus 102 ~~v~PD-----ivt~gK~ 114 (114)
+.|| +.+++|+
T Consensus 203 --~~~~~~~i~i~s~sK~ 218 (360)
T TIGR00858 203 --LKPEPVDIQVGTLSKA 218 (360)
T ss_pred --CCccCCcEEEEechhh
Confidence 6666 6677774
No 103
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.79 E-value=0.00013 Score=58.20 Aligned_cols=82 Identities=23% Similarity=0.216 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccc-cccCccchhhhhc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGF-GRVGTHWWAFQLQ 100 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGf-gRtG~~~~~~~~~ 100 (114)
+.+++.+.+..... .+...++++++....|...+ ++++.++|++||+++|.||++ .|+ +..|. ...+..
T Consensus 155 ~~l~~~i~~~~~~~---~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~ 225 (393)
T TIGR01822 155 ADLEAQLKEARAAG---ARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGR--GSHELC 225 (393)
T ss_pred HHHHHHHHhhhhcC---CCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCC--chHHhc
Confidence 34556665431001 37788999988776676543 799999999999999999998 354 34443 123344
Q ss_pred CCCCCcCEE--Eeec
Q psy1628 101 GDDIIPDIV--TVVW 113 (114)
Q Consensus 101 g~~v~PDiv--t~gK 113 (114)
+..-.+|++ +++|
T Consensus 226 ~~~~~~di~~~s~sK 240 (393)
T TIGR01822 226 GVMGRVDIITGTLGK 240 (393)
T ss_pred CCCCCCeEEEEEChH
Confidence 411146787 4566
No 104
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=97.74 E-value=7.8e-05 Score=59.53 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=36.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.+++++++++.. ..|.+ .+++++++++|++||+++|+|++++.
T Consensus 158 ~~t~~viv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~ 200 (398)
T cd00613 158 EEVAALMVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLN 200 (398)
T ss_pred CCeEEEEEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEecccc
Confidence 578999999864 45766 47899999999999999999998753
No 105
>PLN02721 threonine aldolase
Probab=97.64 E-value=0.00012 Score=57.17 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=40.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++++.+.+.|....+.+.++++.++|+++|+.+|+||.+.
T Consensus 136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~ 181 (353)
T PLN02721 136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI 181 (353)
T ss_pred CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 3788999999988766677899999999999999999999999875
No 106
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=97.63 E-value=0.00019 Score=57.30 Aligned_cols=64 Identities=33% Similarity=0.381 Sum_probs=43.4
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE---EeecC
Q psy1628 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV---TVVWN 114 (114)
Q Consensus 44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv---t~gK~ 114 (114)
++++...+.-.|...+ .++++++++.+++++|.||+.++|++.|. ....+..+ ..|+++ ++||+
T Consensus 163 ~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~--~~~~~i~~~SfSK~ 229 (368)
T PRK03317 163 VVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLP--EYPRLVVSRTMSKA 229 (368)
T ss_pred EEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHH--hCCCEEEEEechhh
Confidence 4444433433454444 44677777777999999999999987775 44455555 678888 77884
No 107
>PLN02483 serine palmitoyltransferase
Probab=97.60 E-value=0.00018 Score=60.84 Aligned_cols=65 Identities=25% Similarity=0.351 Sum_probs=48.1
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhcCCCCCc---CEE--EeecC
Q psy1628 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQGDDIIP---DIV--TVVWN 114 (114)
Q Consensus 42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~g~~v~P---Div--t~gK~ 114 (114)
-..+++|++.+..|.. ..++++.++|++||+++|+||+++ | +|++|. ...++++ +.| |++ +++|+
T Consensus 241 k~livve~v~s~~G~~----~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~--g~~~~~~--v~~~~~dI~~~SfSKs 312 (489)
T PLN02483 241 KIIVIVEGIYSMEGEL----CKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR--GVCELLG--VDPADVDIMMGTFTKS 312 (489)
T ss_pred eEEEEECCCCCCCCcc----cCHHHHHHHHHHcCCEEEEECcCccCccCCCCC--chHHhcC--CCcccCcEEEEecchh
Confidence 4578889887654433 368899999999999999999997 2 467775 2456667 654 777 77874
No 108
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.48 E-value=0.00087 Score=52.16 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+++++.+.. .+ .+.+.+++++.+...|...+ ++++.++|+++|+++|+||++.
T Consensus 119 ~le~~i~~~~-~~---~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~ 172 (349)
T cd06454 119 DLEKLLREAR-RP---YGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS 172 (349)
T ss_pred HHHHHHHHhh-cc---CCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc
Confidence 4666666531 12 46788899888777776533 7999999999999999999985
No 109
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=97.01 E-value=0.0028 Score=53.43 Aligned_cols=58 Identities=16% Similarity=0.061 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.+++.+.++ ++ +++.++++..-....|..+.+.+.+++++++|++||+++|.|+.+.
T Consensus 164 e~Le~~i~~~--~~---~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~ 221 (460)
T PRK13238 164 EKLEALIEEV--GA---ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF 221 (460)
T ss_pred HHHHHHHhhc--CC---CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 5666777654 23 5799999986655555577789999999999999999999999775
No 110
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=96.99 E-value=0.0029 Score=51.34 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=38.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
+++..+.+..+....|...| ++++.++|+++|+++++|++|+.
T Consensus 170 ~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~~ 212 (406)
T TIGR01814 170 DDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHAV 212 (406)
T ss_pred CCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEccccc
Confidence 57889999999888887776 88999999999999999999983
No 111
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=96.66 E-value=0.0092 Score=46.60 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
-+.+++.++++ .++.++++ .|. ..|...+ ++++.++|+++|+++|+||++..
T Consensus 142 ~~~l~~~l~~~-------~~~k~v~l~~p~--~~G~~~d----l~~I~~~~~~~g~~livDeA~~~ 194 (294)
T cd00615 142 PETFKKALIEH-------PDAKAAVITNPT--YYGICYN----LRKIVEEAHHRGLPVLVDEAHGA 194 (294)
T ss_pred HHHHHHHHHhC-------CCceEEEEECCC--CCCEecC----HHHHHHHHHhcCCeEEEECcchh
Confidence 34566666653 34555444 453 2455443 78999999999999999999875
No 112
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=96.64 E-value=0.006 Score=49.47 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=44.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.+...+++.......|...+ ++++.++|+++|+++++|++|+ +|... .+..+ ..+|+++++
T Consensus 141 ~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~-----~~~~~--~~~D~~~~s 201 (402)
T TIGR02006 141 DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP-----INVNE--LKVDLMSIS 201 (402)
T ss_pred CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCccc--cCCCEEEEe
Confidence 35677777777777776654 6799999999999999999997 33221 12223 568999887
No 113
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.62 E-value=0.0061 Score=50.65 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=42.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 111 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~ 111 (114)
.++.++++|......|...+ ++++.++|+++|+++|+||+++. +. ..+... ..+|+++.
T Consensus 147 ~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~~---~~~pl~--~gaDivv~ 205 (427)
T PRK05994 147 PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----PY---LIRPIE--HGADIVVH 205 (427)
T ss_pred cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----cc---cCCccc--cCCcEEEE
Confidence 46788999876665665553 78999999999999999999962 21 122233 55787763
No 114
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=96.54 E-value=0.007 Score=48.29 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=42.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.++..+++.-.+...|...+ ++++.++|+++|+++++|++|+ +|..- .+... ..+|+++++
T Consensus 135 ~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~~-----~~~~~--~~~D~~~~s 195 (379)
T TIGR03402 135 DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKIP-----IDLKE--MNIDMLSLS 195 (379)
T ss_pred CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-ccccc-----cCccc--CCCCEEEEc
Confidence 35566767666666676665 4689999999999999999997 33221 12222 457888887
No 115
>PRK07682 hypothetical protein; Validated
Probab=96.54 E-value=0.012 Score=47.05 Aligned_cols=52 Identities=15% Similarity=0.072 Sum_probs=39.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~ 92 (114)
+++.++++..-+.-.|. ..+.+.++++.++|++|++++|.||+...|...+.
T Consensus 153 ~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~ 204 (378)
T PRK07682 153 AKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA 204 (378)
T ss_pred cccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC
Confidence 35666655433333454 66788999999999999999999999998865553
No 116
>PRK06225 aspartate aminotransferase; Provisional
Probab=96.49 E-value=0.0062 Score=48.78 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=35.0
Q ss_pred CceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+++.+++ ..|. ...|. ..+.+.++++.++|+++|+++|.||++..|.
T Consensus 156 ~~~~~v~l~~p~-NptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 203 (380)
T PRK06225 156 ENTRLIYLIDPL-NPLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFA 203 (380)
T ss_pred CCceEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHh
Confidence 3555554 5563 22344 4577889999999999999999999998773
No 117
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=96.49 E-value=0.017 Score=48.21 Aligned_cols=81 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQ 100 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~ 100 (114)
+.+|+.+++....+ .+-.-++.|.+-+-.|-+.| ++++.+++++|+..+++||... |. |.+|. ...+++
T Consensus 156 ~~Le~~l~~~~~~~---~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr--G~~e~~ 226 (388)
T COG0156 156 DHLEALLEEARENG---ARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGR--GLAEHF 226 (388)
T ss_pred HHHHHHHHhhhccC---CCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCc--cHHHHh
Confidence 67888887742111 14678899998776564444 5689999999999999999986 22 55665 446677
Q ss_pred CCCCCcC-----EEEeecC
Q psy1628 101 GDDIIPD-----IVTVVWN 114 (114)
Q Consensus 101 g~~v~PD-----ivt~gK~ 114 (114)
| +.|+ +.|+||+
T Consensus 227 g--~~~~~vdi~~gTlsKA 243 (388)
T COG0156 227 G--LEPEEVDIIVGTLGKA 243 (388)
T ss_pred C--CCCccceEEEEEchhh
Confidence 8 7765 3456764
No 118
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=96.47 E-value=0.0083 Score=46.81 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=30.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++....| .. . -+++++++|+++|+++|.|++++
T Consensus 105 ~~~~~v~~~~~~G---~~-~---~~~~i~~l~~~~~i~li~D~a~~ 143 (352)
T cd00616 105 PRTKAIIPVHLYG---NP-A---DMDAIMAIAKRHGLPVIEDAAQA 143 (352)
T ss_pred cCCeEEEEECCCC---Cc-C---CHHHHHHHHHHcCCeEEEECCCC
Confidence 4677787766543 22 2 37899999999999999999998
No 119
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=96.47 E-value=0.0091 Score=46.33 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=33.5
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
+..+++++.....|++. +.+.++++.++|+++|+++|+||..
T Consensus 127 ~~~~v~l~~p~n~g~~~--~~~~l~~i~~~~~~~~~~livDea~ 168 (338)
T cd06502 127 PPSLVSLENTTEGGTVY--PLDELKAISALAKENGLPLHLDGAR 168 (338)
T ss_pred cceEEEEEeecCCcccc--CHHHHHHHHHHHHHcCCeEeechHH
Confidence 56778877654444433 8889999999999999999999975
No 120
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=96.42 E-value=0.019 Score=48.10 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCce-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 11 IGRYIILLAVVHLFFERIFLSASLYPFLFLYP-CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 11 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i-AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
-|||.+++. .||+.|.+ +++ .-++.-| .+-+-..-+.+.|.++.++|.+||+++|.|||.+=+--
T Consensus 140 ~~~y~iD~~----~LE~~~~~--------~~vkl~iLCnP--HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~ 205 (388)
T COG1168 140 DGRYEIDFD----ALEKAFVD--------ERVKLFILCNP--HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVL 205 (388)
T ss_pred CCcEEecHH----HHHHHHhc--------CCccEEEEeCC--CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccc
Confidence 356666554 35555555 343 3344444 33333788999999999999999999999999998866
Q ss_pred cC
Q psy1628 90 VG 91 (114)
Q Consensus 90 tG 91 (114)
+|
T Consensus 206 ~g 207 (388)
T COG1168 206 GG 207 (388)
T ss_pred cC
Confidence 77
No 121
>PRK08960 hypothetical protein; Provisional
Probab=96.40 E-value=0.019 Score=46.14 Aligned_cols=64 Identities=20% Similarity=0.170 Sum_probs=43.0
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 111 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~ 111 (114)
....++..|- .-.| ...+.+-++++.++|++||+++|.||+...|...+. .. .... ..++++++
T Consensus 166 ~~~i~i~~p~-NPtG-~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~--~~~~--~~~~vi~~ 229 (387)
T PRK08960 166 TVGALVASPA-NPTG-TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AA--SVLE--VDDDAFVL 229 (387)
T ss_pred ceEEEEECCC-CCCC-cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CC--Chhh--ccCCEEEE
Confidence 4455666663 2234 455788999999999999999999999988743222 11 2233 55677763
No 122
>KOG0259|consensus
Probab=96.28 E-value=0.025 Score=47.87 Aligned_cols=60 Identities=15% Similarity=0.067 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~ 92 (114)
+.+|.+.++ +.+|-+|+-|---.| ...+.+=|+++.+.|+++|+++|+|||..-+--.++
T Consensus 190 ~~veal~DE--------NT~AivviNP~NPcG--nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~ 249 (447)
T KOG0259|consen 190 DGVEALADE--------NTVAIVVINPNNPCG--NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK 249 (447)
T ss_pred HHHHHhhcc--------CeeEEEEeCCCCCCc--ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC
Confidence 456666655 578888999975444 467889999999999999999999999865533333
No 123
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.28 E-value=0.015 Score=48.36 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=34.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|....-.|...+ ++++.++|+++|+++|+||.+.
T Consensus 142 ~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a 183 (425)
T PRK06084 142 ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA 183 (425)
T ss_pred cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence 36778999876665665554 6999999999999999999986
No 124
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=96.23 E-value=0.017 Score=44.90 Aligned_cols=30 Identities=33% Similarity=0.602 Sum_probs=24.3
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 54 GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 54 gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.|...+ ++++.++|++||+++|+|++++ +|
T Consensus 138 ~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g 167 (355)
T TIGR03301 138 TGILNP----LEAIAKVARSHGAVLIVDAMSS-FG 167 (355)
T ss_pred ccchhH----HHHHHHHHHHcCCEEEEEeccc-cC
Confidence 355443 6899999999999999999876 54
No 125
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=96.21 E-value=0.015 Score=47.40 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=33.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.++.++++|......|... -++++.++|+++|+++|+||.++.
T Consensus 138 ~~tklV~le~p~np~g~~~----dl~~I~~la~~~gi~livD~a~~~ 180 (380)
T TIGR01325 138 PNTKLVFVETPSNPLGELV----DIAALAELAHAIGALLVVDNVFAT 180 (380)
T ss_pred CCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCcc
Confidence 4678999997655444333 379999999999999999999863
No 126
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=96.19 E-value=0.012 Score=46.40 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 53 CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 53 ~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
..|...+ ++++.++|+++|+++++||.++++
T Consensus 163 ~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~ 193 (371)
T PRK13520 163 ELGQVDP----IPELSKIALENGIFLHVDAAFGGF 193 (371)
T ss_pred CCcccCC----HHHHHHHHHHcCCCEEEEecchhH
Confidence 4565554 899999999999999999999876
No 127
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=96.12 E-value=0.021 Score=45.09 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=33.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++.......|...+ ++++.++|+++|+++|+|++++
T Consensus 136 ~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~ 177 (376)
T TIGR01977 136 TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT 177 (376)
T ss_pred CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc
Confidence 45667777766555666655 5789999999999999999996
No 128
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=96.11 E-value=0.015 Score=48.00 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=33.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+++.++++|....-.|... + ++++.++|+++|+++|+||++.
T Consensus 141 ~~t~~V~le~p~NPtg~v~-d---l~~I~~la~~~~i~livD~t~~ 182 (418)
T TIGR01326 141 ENTKAVFAETIGNPAINVP-D---IEAIAEVAHAHGVPLIVDNTFA 182 (418)
T ss_pred cCCeEEEEECCCCCCCeec-C---HHHHHHHHHHcCCEEEEECCCc
Confidence 4678899987654445443 3 7899999999999999999985
No 129
>PRK07777 aminotransferase; Validated
Probab=95.96 E-value=0.026 Score=45.28 Aligned_cols=48 Identities=17% Similarity=0.088 Sum_probs=37.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++...+.-.|.. .+.+.++++.++|+++++++|.||+...+.
T Consensus 158 ~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 158 PRTRALIVNSPHNPTGTV-LTAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred cccEEEEEcCCCCCCCcc-CCHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 356677776545445654 478899999999999999999999998774
No 130
>PRK06108 aspartate aminotransferase; Provisional
Probab=95.95 E-value=0.016 Score=46.08 Aligned_cols=48 Identities=29% Similarity=0.252 Sum_probs=37.0
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
++.++++...+.-.|.. .+.+.++++.++|+++|+++|.||+..+|..
T Consensus 158 ~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 205 (382)
T PRK06108 158 RTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYY 205 (382)
T ss_pred cceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence 45566665434334544 5789999999999999999999999998843
No 131
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=95.94 E-value=0.025 Score=44.64 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=42.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.+...+++.......|...+ ++++.++|+++|+++|+|+++. +|..- +..+. ..+|+++++
T Consensus 137 ~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~~---~~~~~----~~~D~~~~s 197 (353)
T TIGR03235 137 PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKIT---VDLSA----DRIDLISCS 197 (353)
T ss_pred CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCcc---ccccc----cCCCEEEee
Confidence 35677777777666677655 6999999999999999999987 33221 11121 346888776
No 132
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=95.88 E-value=0.034 Score=43.93 Aligned_cols=45 Identities=24% Similarity=0.329 Sum_probs=35.4
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
+.++..|- .-.| ..++.+.++++.++|+++|+++|.||+..+|..
T Consensus 128 ~v~i~~p~-NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~ 172 (330)
T TIGR01140 128 VLVLCNPN-NPTG-RLIPPETLLALAARLRARGGWLVVDEAFIDFTP 172 (330)
T ss_pred EEEEeCCC-CCCC-CCCCHHHHHHHHHHhHhcCCEEEEECcccccCC
Confidence 55566662 2223 467889999999999999999999999988853
No 133
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=95.88 E-value=0.052 Score=43.94 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=33.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.+++++-..+..|... -++++.++|+++|+++|+|++++
T Consensus 157 ~~~~lV~l~~~~~~tG~~~----~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 157 KPPALALLTHVDGNYGNLA----DAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCEEEEEECCCCCCcccc----cHHHHHHHHHHcCCEEEEECCcc
Confidence 3678888876555455433 38899999999999999999987
No 134
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=95.80 E-value=0.027 Score=45.45 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=34.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|...+-.|...+ ++++.++|+++|+++|+|+...
T Consensus 124 ~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~ 165 (369)
T cd00614 124 PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFA 165 (369)
T ss_pred CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence 46788999987665564443 7899999999999999999865
No 135
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=95.77 E-value=0.028 Score=47.21 Aligned_cols=59 Identities=15% Similarity=0.013 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
-+.+++.+.+. +. .++++++++--....|-.+.+.+.+++++++|++||+.+|.|+.+.
T Consensus 138 ~e~Le~~I~~~--~~---~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~ 196 (431)
T cd00617 138 VAKLEKLIDEV--GA---ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARF 196 (431)
T ss_pred HHHHHHHhCcc--cC---CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 34566666543 12 4688888873222233478889999999999999999999999975
No 136
>PLN02651 cysteine desulfurase
Probab=95.77 E-value=0.031 Score=44.56 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=34.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+...+.+.......|...+ ++++.++|+++|+++++|.+|+
T Consensus 137 ~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~ 178 (364)
T PLN02651 137 PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA 178 (364)
T ss_pred CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh
Confidence 35667777766666676655 6799999999999999999998
No 137
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=95.77 E-value=0.022 Score=47.60 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=32.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++.+..|. +..+++++++|+++|+++|.|+.|+
T Consensus 158 ~~tkaVi~~~~~G~-------p~dl~~I~~la~~~gi~vIeDaa~a 196 (438)
T PRK15407 158 PKTKAIMIAHTLGN-------PFDLAAVKAFCDKHNLWLIEDNCDA 196 (438)
T ss_pred cCCeEEEEeCCCCC-------hhhHHHHHHHHHHCCCEEEEECccc
Confidence 46788998886653 2467999999999999999999997
No 138
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=95.72 E-value=0.1 Score=40.93 Aligned_cols=62 Identities=16% Similarity=0.057 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCCCCC--ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628 23 LFFERIFLSASLYPFLFL--YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~--~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt 90 (114)
..+++.+++.. . . +..++++.....--| ...+.+.++++.++|++||+.+|.||+...+...
T Consensus 133 ~~l~~~l~~~~--~---~~~~~~~v~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~ 196 (363)
T PF00155_consen 133 EALEEALDELP--S---KGPRPKAVLICNPNNPTG-SVLSLEELRELAELAREYNIIIIVDEAYSDLIFG 196 (363)
T ss_dssp HHHHHHHHTSH--T---TTETEEEEEEESSBTTTT-BB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred ccccccccccc--c---cccccceeeecccccccc-cccccccccchhhhhcccccceeeeeceeccccC
Confidence 35666666642 1 2 356666654433334 4668889999999999999999999999988433
No 139
>PRK14012 cysteine desulfurase; Provisional
Probab=95.68 E-value=0.034 Score=45.01 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=42.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.+..++++.......|...+ ++++.++|+++|+++|.|++|+ +|..- +..+ . ..+|+++++
T Consensus 143 ~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~---~~~~--~--~~~D~~~~s 203 (404)
T PRK14012 143 DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP---IDLS--K--LKVDLMSFS 203 (404)
T ss_pred CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc---cCcc--c--CCCCEEEEe
Confidence 35567777777666676554 6899999999999999999997 33221 1111 2 457888776
No 140
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=95.60 E-value=0.048 Score=43.57 Aligned_cols=42 Identities=24% Similarity=0.264 Sum_probs=32.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++...+++.-.....|...+ ++++.++|+++|+++|+||++.
T Consensus 155 ~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~ 196 (397)
T TIGR01976 155 PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY 196 (397)
T ss_pred CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh
Confidence 35566666655555565543 8899999999999999999985
No 141
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.57 E-value=0.089 Score=43.53 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=37.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+..+.++.-|- .--| ...+.+-++++.++|+++|+++|.||+...|-
T Consensus 190 ~~~~i~i~~P~-NPtG-~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 190 NTVAMVIINPN-NPCG-SVYSYEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred CceEEEEeCCC-CCCC-CCCCHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 45677777773 2234 46778889999999999999999999998774
No 142
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=95.53 E-value=0.068 Score=42.37 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=31.8
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628 53 CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 111 (114)
Q Consensus 53 ~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~ 111 (114)
..|...+ ++++.++|+++|+++|+|.+++ +|... +.... ..+|+++.
T Consensus 141 ~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~~----~~~D~~~~ 187 (363)
T TIGR02326 141 TTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIAE----LHIDYLIS 187 (363)
T ss_pred CccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchhh----cCccEEEe
Confidence 3455554 5899999999999999999986 54332 12222 34677765
No 143
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=95.52 E-value=0.048 Score=45.61 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=37.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
.++.++++ +-+++---...+++.++++.++|++|++.+|.||+...+
T Consensus 199 ~~vk~lll-~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~ 245 (447)
T PLN02607 199 IRVRGVLI-TNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGS 245 (447)
T ss_pred CCeeEEEE-eCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence 57877777 444553335777899999999999999999999999874
No 144
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=95.52 E-value=0.06 Score=42.94 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DE 82 (114)
-+.+++.++++.. +..+++.+.+|--....|-.+.+.+.+++++++|++||+.+.+|=
T Consensus 108 ~~~l~~~~~~~~~---h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 108 PEDLEAAIEEHGA---HHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp HHHHHHHHHHHTG---TSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHhhhccc---cCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEeh
Confidence 3456666666421 126899999999877767788999999999999999999999993
No 145
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=95.37 E-value=0.064 Score=42.41 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=40.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
+++.++++.-.....|...+ ++++.++|+++|++++.|+.++ ++... +... . ..+|+++++
T Consensus 138 ~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~--~--~~~d~~~~s 198 (373)
T cd06453 138 ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP---VDVQ--D--LGCDFLAFS 198 (373)
T ss_pred CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee---eecc--c--cCCCEEEec
Confidence 35667776544444455543 5799999999999999999886 32221 1111 2 457888887
No 146
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=95.25 E-value=0.058 Score=43.13 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=32.2
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+...+++.-.....|...+ ++++.++|+++|+++++|+++.
T Consensus 140 ~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~ 180 (382)
T TIGR03403 140 KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA 180 (382)
T ss_pred CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh
Confidence 4566667655556676665 5689999999999999999987
No 147
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=95.13 E-value=0.062 Score=43.23 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=38.3
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
+...+.+.-.....|...+ ++++.++|+++|+++++|++|. ++.. . .... . ..+|+.+++
T Consensus 157 ~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~--~~~~--~--~~~d~~~~s 216 (398)
T TIGR03392 157 RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P--PDVQ--A--LDIDFYAFS 216 (398)
T ss_pred CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C--CChh--h--cCCCEEEEe
Confidence 4455555434444565543 5789999999999999999996 2221 1 1112 2 456888887
No 148
>PRK07550 hypothetical protein; Provisional
Probab=95.08 E-value=0.071 Score=42.79 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=33.0
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
+.++.-|- .-.|. ..+.+.++++.++|++||+.+|.||+...|
T Consensus 166 ~v~~~~P~-NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~ 208 (386)
T PRK07550 166 AIALVTPN-NPTGV-VYPPELLHELYDLARRHGIALILDETYRDF 208 (386)
T ss_pred EEEEeCCC-CCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence 33555553 22343 457889999999999999999999999877
No 149
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=94.97 E-value=0.094 Score=43.00 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=31.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++.++++|....--|...+ ++++.++|+++|+++|+||.++
T Consensus 137 ~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a 177 (385)
T PRK08574 137 RTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFA 177 (385)
T ss_pred CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC
Confidence 6778888765544443333 6799999999999999999984
No 150
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=94.94 E-value=0.093 Score=43.15 Aligned_cols=42 Identities=29% Similarity=0.250 Sum_probs=33.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|-...-.|...+ ++++.++|+++|+++|+||.++
T Consensus 149 ~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a 190 (398)
T PRK07504 149 PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFA 190 (398)
T ss_pred cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcc
Confidence 46778888876554454443 8899999999999999999986
No 151
>PRK08175 aminotransferase; Validated
Probab=94.93 E-value=0.1 Score=42.17 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
+.+++.++++. .++.++++.. +.+-.-...+.+-++++.++|++||+.+|.||+...+
T Consensus 152 ~~l~~~l~~~~------~~~~~v~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l 209 (395)
T PRK08175 152 NELERAIRESY------PKPKMMILGF-PSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADI 209 (395)
T ss_pred HHHHHHHhhcc------CCceEEEEeC-CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence 44566665531 4667777762 2332226777888899999999999999999999876
No 152
>PRK07324 transaminase; Validated
Probab=94.92 E-value=0.17 Score=40.71 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=36.5
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
++.++++..-..-.| ...+++.++++.++|++||+++|.||+..++...+
T Consensus 153 ~~kli~i~~p~NPtG-~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~ 202 (373)
T PRK07324 153 NTKLICINNANNPTG-ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG 202 (373)
T ss_pred CCcEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC
Confidence 444555543222234 45678899999999999999999999998885544
No 153
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=94.90 E-value=0.11 Score=42.08 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=36.9
Q ss_pred CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.++.++++. | +.-.| ...+.+-++++.++|++|++++|.||+...|--.|
T Consensus 165 ~~~~~i~l~~P-~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~ 215 (391)
T PRK07309 165 DKLKAVILNYP-ANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTG 215 (391)
T ss_pred CCeEEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCC
Confidence 467777776 5 22234 45566778999999999999999999998774333
No 154
>PRK08636 aspartate aminotransferase; Provisional
Probab=94.87 E-value=0.22 Score=40.42 Aligned_cols=62 Identities=6% Similarity=0.001 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 20 VVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 20 ~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.....+++.++++. .++.++++- .+.+---...+.+-+++|.++|++|++++|.||+...|-
T Consensus 160 ~l~~~l~~~~~~~~------~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~ 221 (403)
T PRK08636 160 QFFENLEKALRESS------PKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT 221 (403)
T ss_pred hhhhHHHHHHhhcc------CCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence 33445666676542 456666665 223322256677788899999999999999999988763
No 155
>PRK05764 aspartate aminotransferase; Provisional
Probab=94.87 E-value=0.15 Score=40.78 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=33.4
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++..-..-.| ...+.+-++++.++|++||+++|.||+...+.
T Consensus 164 ~~~~v~~~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 210 (393)
T PRK05764 164 KTKALILNSPSNPTG-AVYSPEELEAIADVAVEHDIWVLSDEIYEKLV 210 (393)
T ss_pred cceEEEEECCCCCCC-cccCHHHHHHHHHHHHHCCcEEEEecccccee
Confidence 344444432222234 34566889999999999999999999998764
No 156
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=94.84 E-value=0.066 Score=45.94 Aligned_cols=55 Identities=18% Similarity=0.021 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DE 82 (114)
+.+++.+.++ ++ +++..+..+-.....|-.+.|.+.+++++++|++||+.+.+|=
T Consensus 170 ~~le~~I~~~--g~---~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 170 EGLERGIEEV--GP---NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred HHHHHHHhhc--CC---CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEh
Confidence 3466666664 33 6787777776655567789999999999999999999999994
No 157
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=94.82 E-value=0.1 Score=41.97 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=38.4
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
+...+++.-.....|...+ ++++.++|+++|+++|+|+++. +|..- ..... ..+|+++.+
T Consensus 160 ~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~-----~~~~~--~~~d~~~~s 219 (401)
T PRK10874 160 RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP-----ADVQA--LDIDFYAFS 219 (401)
T ss_pred CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc-----CCchh--cCCCEEEEe
Confidence 4455555544444565543 5789999999999999999996 22221 11112 457887776
No 158
>PRK05939 hypothetical protein; Provisional
Probab=94.75 E-value=0.084 Score=43.57 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=33.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|......|.. .=++++.++|+++|+++|+|+.++
T Consensus 130 ~~tklV~vesp~NptG~v----~dl~~I~~la~~~gi~livD~t~a 171 (397)
T PRK05939 130 PNTRMVFVETIANPGTQV----ADLAGIGALCRERGLLYVVDNTMT 171 (397)
T ss_pred CCCeEEEEECCCCCCCCH----HhHHHHHHHHHHcCCEEEEECCcc
Confidence 467788898766555544 238899999999999999999985
No 159
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=94.74 E-value=0.1 Score=42.67 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=33.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.++.++++|-...-.|...+ ++++.++|+++|+++|+|+.++.
T Consensus 133 ~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~ 175 (380)
T PRK06176 133 PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFAT 175 (380)
T ss_pred cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCccc
Confidence 46788888765444454433 77999999999999999999874
No 160
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=94.74 E-value=0.12 Score=41.76 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=36.6
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
..+++-|-+.+---...+.+.++++.++|++|++.+|.||+...|.
T Consensus 173 ~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~ 218 (396)
T PRK09257 173 DVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFG 218 (396)
T ss_pred CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence 3566666655532256788999999999999999999999999885
No 161
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=94.73 E-value=0.078 Score=41.65 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=31.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++-......|...+ ++++.++|+++|++++.|+++. +|
T Consensus 124 ~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g 166 (356)
T cd06451 124 DIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LG 166 (356)
T ss_pred CCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-cc
Confidence 5566666554444565544 7789999999999999999886 44
No 162
>PRK07568 aspartate aminotransferase; Provisional
Probab=94.71 E-value=0.13 Score=41.14 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=36.1
Q ss_pred ceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 41 YPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
++.+++ .-|- ...| ...+.+-++++.++|+++|+++|.||+..+|...+
T Consensus 162 ~~~~v~i~~p~-NPtG-~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~ 211 (397)
T PRK07568 162 KTKAILISNPG-NPTG-VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDG 211 (397)
T ss_pred cceEEEEECCC-CCCC-ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCC
Confidence 444554 4552 2234 46667778999999999999999999999886555
No 163
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=94.68 E-value=0.22 Score=40.65 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=37.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+..+.++.-|- .-.| ...+.+-++++.++|++|++++|.||+...|-..+
T Consensus 170 ~~~~~~~~nP~-NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~ 219 (409)
T PLN00143 170 NTIAMVIINPG-NPCG-SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGS 219 (409)
T ss_pred CCEEEEEECCC-CCCC-CccCHHHHHHHHHHHHHcCCeEEEEccccccccCC
Confidence 35566777772 2234 45677888999999999999999999999874433
No 164
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=94.53 E-value=0.13 Score=42.14 Aligned_cols=42 Identities=19% Similarity=0.126 Sum_probs=33.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|..... .....-++++.++|+++|+++|+||+++
T Consensus 134 ~~tklV~lesp~Np----~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 134 PNTKVLFLEAPSSI----TFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred CCceEEEEECCCCC----CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 46778888865443 2344578999999999999999999996
No 165
>PLN02231 alanine transaminase
Probab=94.47 E-value=0.16 Score=43.67 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=35.9
Q ss_pred ceEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 41 YPCAF-FAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 41 ~iAAv-iiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
++.++ ++-| ++---...+.+-+++|.++|++||+++|.||+..-+-.
T Consensus 271 ~~k~ivl~nP--~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y 318 (534)
T PLN02231 271 TVRALVVINP--GNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY 318 (534)
T ss_pred CeEEEEEeCC--CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence 56554 4444 44222567899999999999999999999999988743
No 166
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=94.47 E-value=0.29 Score=39.65 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=34.6
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+.++.-| ..-.| ...+.+-++++.++|+++|+.+|.||+...|...+
T Consensus 172 ~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~ 218 (403)
T TIGR01265 172 AIVVINP-SNPCG-SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD 218 (403)
T ss_pred EEEEecC-CCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC
Confidence 3444445 22234 46677778999999999999999999999885444
No 167
>PLN02656 tyrosine transaminase
Probab=94.43 E-value=0.29 Score=39.90 Aligned_cols=50 Identities=12% Similarity=-0.010 Sum_probs=37.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+..+.++..|- .-.| ...+.+-++++.++|++||+++|.||+...|-..+
T Consensus 169 ~~~~v~l~~P~-NPtG-~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~ 218 (409)
T PLN02656 169 NTVALVIINPG-NPCG-NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS 218 (409)
T ss_pred CceEEEEECCC-CCCC-CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC
Confidence 34566666773 2234 34577889999999999999999999999874333
No 168
>PLN00175 aminotransferase family protein; Provisional
Probab=94.42 E-value=0.23 Score=40.74 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=36.3
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++..-..-.|. ..+.+.++++.++|++|++++|.||+...|-
T Consensus 187 ~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 187 KTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred CceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 4556666543433454 5578899999999999999999999998774
No 169
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=94.34 E-value=0.14 Score=41.46 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=40.2
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
+...+.+.-.....|...+ ++++.++|+++|+++++|++|+ +|..- ...+. ..+|+++.+
T Consensus 164 ~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~----~~~D~~~~s 223 (406)
T PRK09295 164 RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP---VDVQA----LDCDFYVFS 223 (406)
T ss_pred CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc---cCchh----cCCCEEEee
Confidence 4556666555555676655 6889999999999999999996 43322 11222 346888776
No 170
>PRK07337 aminotransferase; Validated
Probab=94.30 E-value=0.35 Score=38.84 Aligned_cols=49 Identities=24% Similarity=0.326 Sum_probs=35.0
Q ss_pred ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+..++++ +.+.+ .| ...+.+-++++.++|+++|+++|.||+...|.-.+
T Consensus 163 ~~~~v~l-~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~ 212 (388)
T PRK07337 163 RTRGVLL-ASPSNPTG-TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDA 212 (388)
T ss_pred cceEEEE-ECCCCCCC-cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 4444444 33333 34 45577888999999999999999999988775433
No 171
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=94.30 E-value=0.17 Score=42.50 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=31.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|......|. ..+ ++++.++|+++|+++|+|.+++
T Consensus 154 ~~tk~V~~e~~~Np~~~-v~d---i~~I~~la~~~gi~livD~t~a 195 (437)
T PRK05613 154 PNTKAFFGETFANPQAD-VLD---IPAVAEVAHRNQVPLIVDNTIA 195 (437)
T ss_pred ccCeEEEEECCCCCCCc-ccC---HHHHHHHHHHcCCeEEEECCCc
Confidence 45677888765443342 233 7899999999999999999985
No 172
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=94.28 E-value=0.16 Score=42.02 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=32.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|-...-.|... + ++++.++|+++|+++|+||.+.
T Consensus 154 ~~tklV~~esp~Nptg~v~-d---l~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 154 VPTQAVFFETPSNPMQSLV-D---IAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred cCceEEEEECCCCCCCeec-C---HHHHHHHHHHcCCEEEEECCCC
Confidence 4677888886554445333 2 8899999999999999999975
No 173
>PTZ00376 aspartate aminotransferase; Provisional
Probab=94.26 E-value=0.17 Score=41.19 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=35.2
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
.+++=|-+.+---...+.+-++++.++|++|++++|.||+...|-.
T Consensus 178 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 178 VVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 3455454444323566889999999999999999999999988843
No 174
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=94.25 E-value=0.17 Score=41.34 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=33.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|-..+-.|...+ ++++.++|+++|+++|+|+.+.
T Consensus 130 ~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~ 171 (378)
T TIGR01329 130 PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMM 171 (378)
T ss_pred cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCc
Confidence 46788898965544454443 8999999999999999999873
No 175
>PRK06855 aminotransferase; Validated
Probab=94.24 E-value=0.18 Score=41.68 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=36.5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
-+.++.-|- +---...+.+.+++|.++|++||+++|.||+...+...+
T Consensus 173 ~~i~l~~P~--NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~ 220 (433)
T PRK06855 173 AGILLINPD--NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG 220 (433)
T ss_pred eEEEEECCC--CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 345566663 322257888899999999999999999999999884444
No 176
>PLN02187 rooty/superroot1
Probab=94.19 E-value=0.28 Score=41.07 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=37.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
...+.++.-|- .-.| ...+.+-++++.++|++||+++|.||+...|--.+
T Consensus 204 ~~~~v~i~nP~-NPTG-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~ 253 (462)
T PLN02187 204 NTVAMVVINPN-NPCG-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGD 253 (462)
T ss_pred CcEEEEEeCCC-CCCC-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence 35567777774 2224 56678899999999999999999999998863333
No 177
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=94.19 E-value=0.17 Score=39.95 Aligned_cols=42 Identities=21% Similarity=0.036 Sum_probs=30.6
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
..+.+++.|. ...|...+ ++++.++|+++|+++|+||.+.++
T Consensus 154 ~~~vv~~~~~-~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~ 195 (373)
T TIGR03812 154 TIGIVGIAGT-TELGQIDD----IEELSKIALENGIYLHVDAAFGGF 195 (373)
T ss_pred cEEEEEECCC-CCCCccCC----HHHHHHHHHHcCCeEEEEcCchhH
Confidence 3455666663 34455532 778999999999999999998754
No 178
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=94.17 E-value=0.16 Score=40.78 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=32.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+++.++++.-.....|...+ ++++.++|+++|+++|+|+.+.
T Consensus 158 ~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~ 199 (403)
T TIGR01979 158 EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA 199 (403)
T ss_pred cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh
Confidence 35666666655555566655 7889999999999999999985
No 179
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=94.12 E-value=0.36 Score=38.28 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=33.6
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++.+-..-.| ...+.+-++++.++|++||+.+|.||+..-+
T Consensus 136 ~~~~i~i~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~ 181 (350)
T TIGR03537 136 ETKIVWINYPHNPTG-ATAPRSYLKETIAMCREHGIILCSDECYTEI 181 (350)
T ss_pred ccEEEEEeCCCCCcC-cccCHHHHHHHHHHHHHcCcEEEEecccccc
Confidence 344455544222234 5678889999999999999999999998654
No 180
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=94.04 E-value=0.31 Score=38.62 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCeEEEcccccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++++.++|+++|+++|+|.++ .||
T Consensus 150 ~~~i~~l~~~~~~~livDa~~-~~g 173 (368)
T PRK13479 150 LDEIAAVAKRHGKRLIVDAMS-SFG 173 (368)
T ss_pred HHHHHHHHHHcCCEEEEEccc-ccC
Confidence 579999999999999999887 464
No 181
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=94.03 E-value=0.18 Score=42.14 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=31.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+++.++++|......|...+ ++++.++|+++|+++|+|+++.
T Consensus 148 ~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a 189 (431)
T PRK08248 148 DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA 189 (431)
T ss_pred CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC
Confidence 46778888844333354443 5799999999999999999975
No 182
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=93.98 E-value=0.19 Score=42.17 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|......|...+ ++++.++|+++|+++|+|+.++
T Consensus 154 ~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a 195 (436)
T PRK07812 154 PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA 195 (436)
T ss_pred CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence 46788999987665554443 5789999999999999999875
No 183
>PRK06207 aspartate aminotransferase; Provisional
Probab=93.96 E-value=0.36 Score=39.35 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=33.8
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.++.-|- .-.| ...+.+-++++.++|++||+++|.||+..-|-..|
T Consensus 182 v~l~~P~-NPTG-~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~ 227 (405)
T PRK06207 182 FLFSNPN-NPAG-VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG 227 (405)
T ss_pred EEECCCC-CCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence 3444552 2234 45577889999999999999999999998774334
No 184
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=93.95 E-value=0.19 Score=42.16 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=32.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|-.....|.+. + ++++.++|+++|+++|+|..|+
T Consensus 148 ~~TklV~~e~~~np~g~v~-D---i~~I~~la~~~gi~livD~t~a 189 (433)
T PRK08134 148 PNTRLLFGETLGNPGLEVL-D---IPTVAAIAHEAGVPLLVDSTFT 189 (433)
T ss_pred CCCeEEEEECCCcccCccc-C---HHHHHHHHHHcCCEEEEECCCc
Confidence 4677888887543334333 3 7899999999999999999985
No 185
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=93.88 E-value=0.3 Score=40.65 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 64 LREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
++++.++|+++|+++++|++|+ +|..+...+.... -..|+++++
T Consensus 199 i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~----~~~D~l~~S 242 (452)
T PTZ00094 199 YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPF----PYADVVTTT 242 (452)
T ss_pred HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCC----CCCcEEEcC
Confidence 5688899999999999999998 5554431111111 135887764
No 186
>PRK02948 cysteine desulfurase; Provisional
Probab=93.86 E-value=0.2 Score=39.95 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=33.3
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt 90 (114)
+...++++-.....|...+ ++++.++|+++|+++++|++++ ||..
T Consensus 138 ~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~ 182 (381)
T PRK02948 138 DTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL 182 (381)
T ss_pred CCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccc
Confidence 4456666655555676654 5689999999999999999876 6543
No 187
>PRK08361 aspartate aminotransferase; Provisional
Probab=93.86 E-value=0.24 Score=39.82 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=33.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++.--+.-.|. ..+.+-++++.++|+++++++|.||+...|
T Consensus 166 ~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~ 211 (391)
T PRK08361 166 RTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHF 211 (391)
T ss_pred ccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccc
Confidence 4445555522333454 556778899999999999999999999876
No 188
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=93.80 E-value=0.21 Score=42.03 Aligned_cols=41 Identities=12% Similarity=0.033 Sum_probs=32.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.+..++++|. +++--...++ ++++.++|+++|+++|.|+..
T Consensus 146 ~~Tk~I~~e~-pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~ 186 (432)
T PRK06702 146 DKTKLVYAES-LGNPAMNVLN---FKEFSDAAKELEVPFIVDNTL 186 (432)
T ss_pred cCCeEEEEEc-CCCccccccC---HHHHHHHHHHcCCEEEEECCC
Confidence 4677888886 5554333444 999999999999999999986
No 189
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=93.75 E-value=0.15 Score=40.63 Aligned_cols=51 Identities=24% Similarity=0.332 Sum_probs=38.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.++.++++...+.-.| ...+.+-++++.++|+++|+.+|.||+...|...+
T Consensus 141 ~~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~ 191 (357)
T TIGR03539 141 VGPDLIWLNSPGNPTG-RVLSVDELRAIVAWARERGAVVASDECYLELGWEG 191 (357)
T ss_pred cCccEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCC
Confidence 4567777764333234 56677888999999999999999999998775433
No 190
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=93.67 E-value=0.24 Score=40.37 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=31.2
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++..+++.-.....|...+ ++++.++|+++|+++|+|+++.
T Consensus 173 ~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~ 213 (424)
T PLN02855 173 KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS 213 (424)
T ss_pred CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh
Confidence 4556666655555566655 5688999999999999999995
No 191
>PLN02242 methionine gamma-lyase
Probab=93.61 E-value=0.16 Score=42.20 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=33.4
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
+..++++|-...-.|... -++++.++|+++|+++|+||+++.+
T Consensus 163 ~tklV~lesp~NPtG~v~----dl~~I~~la~~~gi~livDea~~~~ 205 (418)
T PLN02242 163 KTKVLYFESISNPTLTVA----DIPELARIAHEKGVTVVVDNTFAPM 205 (418)
T ss_pred CCEEEEEecCCCCCCccc----CHHHHHHHHHHhCCEEEEECCCCcc
Confidence 478899996554345433 3799999999999999999998644
No 192
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=93.54 E-value=0.22 Score=38.76 Aligned_cols=24 Identities=21% Similarity=0.120 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCeEEEccccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~tGf 87 (114)
++++.++|+++|+.+++|+++.++
T Consensus 167 ~~~i~~~~~~~~~~l~vD~a~~~~ 190 (345)
T cd06450 167 LEEIADLAEKYDLWLHVDAAYGGF 190 (345)
T ss_pred HHHHHHHHHHhCCeEEEechhhHH
Confidence 789999999999999999999865
No 193
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=93.51 E-value=0.41 Score=37.53 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=30.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
.++.++++.......|...+ .+.++++.+.|+ +++++|+||++..+..
T Consensus 141 ~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~ 188 (346)
T TIGR01141 141 DKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSG 188 (346)
T ss_pred CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcC
Confidence 45667776643444455444 444555555554 5999999999997754
No 194
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=93.47 E-value=0.24 Score=41.87 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=33.5
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+.++.-|- .-.|. ..+.+.++++.++|++|++++|.||+..-|-
T Consensus 284 ~i~i~nP~-NPTG~-v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~ 327 (517)
T PRK13355 284 AIVIINPN-NPTGA-LYPREVLQQIVDIAREHQLIIFSDEIYDRLV 327 (517)
T ss_pred EEEEECCC-CCCCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhhc
Confidence 44566662 22343 4568899999999999999999999988763
No 195
>PLN02397 aspartate transaminase
Probab=93.35 E-value=0.31 Score=40.13 Aligned_cols=44 Identities=11% Similarity=0.210 Sum_probs=34.4
Q ss_pred EEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 44 AFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 44 AviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.+++-|-+.+ -| ...+.+.++++.++|++||+++|.||+...|.
T Consensus 196 ~~i~~~~P~NPTG-~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~ 240 (423)
T PLN02397 196 FVLLHACAHNPTG-VDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA 240 (423)
T ss_pred EEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence 4444444443 34 45678899999999999999999999999994
No 196
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=93.26 E-value=0.12 Score=42.67 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=38.6
Q ss_pred ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
++-++++ -|---. | ...+++.++++.++|++||+.+|.||+..+|-..|
T Consensus 163 ktk~i~ln~P~NPT-G-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 163 KTKAIILNSPNNPT-G-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred cceEEEEeCCCCCc-C-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 4545555 554222 2 57889999999999999999999999999997776
No 197
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=93.26 E-value=0.19 Score=41.21 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=32.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|......|...+ ++++.++|+++|+++|.||++.
T Consensus 145 ~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~ 186 (390)
T PRK08133 145 PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFC 186 (390)
T ss_pred cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc
Confidence 46778888865444454432 6899999999999999999974
No 198
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=93.26 E-value=0.2 Score=42.86 Aligned_cols=58 Identities=12% Similarity=-0.030 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.+|+.+.++ ++ .+++.+.+|-....+|-.+.|...+++++++|++||+.+|.|=-+.
T Consensus 157 ~~Le~aI~~~--~~---~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~ 214 (450)
T TIGR02618 157 KKLQKLIDEV--GA---DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC 214 (450)
T ss_pred HHHHHHhccc--cC---cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch
Confidence 4455566543 12 3555566665555444478888999999999999999999996664
No 199
>PRK05967 cystathionine beta-lyase; Provisional
Probab=93.22 E-value=0.42 Score=39.78 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=34.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.+..++++|...+. .....-++++.++|+++|+++|+|+++..
T Consensus 148 ~~TklV~lesPsNP----~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 148 PNTKVVHTEAPGSN----TFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred cCceEEEEECCCCC----CCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 46778999955442 34566699999999999999999999864
No 200
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=93.20 E-value=0.51 Score=40.10 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=38.2
Q ss_pred CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.++.++++- -+++ -| ...+.+-++++.++|++|++.+|.||+...+-..+
T Consensus 198 ~~~k~l~l~-nP~NPTG-~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~ 248 (496)
T PLN02376 198 KKVKGLILT-NPSNPLG-TMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG 248 (496)
T ss_pred CCeeEEEEc-CCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence 467666664 3444 34 46678899999999999999999999999874344
No 201
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=93.18 E-value=0.34 Score=40.02 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=31.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++..++++|-...-.|...+ ++++.++|+++|+++|+||.+.
T Consensus 137 ~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~ 178 (388)
T PRK08861 137 KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFL 178 (388)
T ss_pred cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence 46778888844333444443 5689999999999999999986
No 202
>PRK09028 cystathionine beta-lyase; Provisional
Probab=93.16 E-value=0.32 Score=40.40 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=33.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+...+++|...... ....-++++.++|+++|+++|+||+++
T Consensus 145 ~~TklV~lespsNPt----g~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 145 PNTKVLFLESPGSIT----MEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred cCceEEEEECCCCCC----CcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 467788888755432 334568999999999999999999996
No 203
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=93.12 E-value=0.2 Score=42.92 Aligned_cols=58 Identities=9% Similarity=-0.070 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.+++.+.++ ++ .+++.+.++-.....|-.+.|...+++++++|++||+.+|.|=-+.
T Consensus 164 d~Le~~I~~~--~~---~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra 221 (460)
T PRK13237 164 DKLQALIDEV--GA---ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC 221 (460)
T ss_pred HHHHHHhccc--cC---CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch
Confidence 3455555543 12 4555444444334444478888999999999999999999997665
No 204
>PRK06348 aspartate aminotransferase; Provisional
Probab=93.11 E-value=0.23 Score=39.96 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=34.4
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++. -+.+-.-...+.+-++++.++|+++|+++|.||+...|.
T Consensus 162 ~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 162 KTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 34445543 233322245578899999999999999999999999873
No 205
>PRK07681 aspartate aminotransferase; Provisional
Probab=93.08 E-value=0.3 Score=39.46 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=35.0
Q ss_pred ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++- | +.-.| ...+++-++++.++|++||+++|.||+...|-
T Consensus 166 ~~k~v~l~~P-~NPTG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 212 (399)
T PRK07681 166 KAKMMILNFP-GNPVP-AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFY 212 (399)
T ss_pred cceEEEEeCC-CCCcC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhe
Confidence 45566655 6 22234 45577888999999999999999999999773
No 206
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=92.92 E-value=0.25 Score=39.33 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++ .| +.--|. ..+.+.++++.++|+++++.+|.||+...|-
T Consensus 142 ~~k~v~l~~p-~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (356)
T PRK08056 142 DLDCLFLCTP-NNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFI 188 (356)
T ss_pred CCCEEEEeCC-cCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence 4445555 34 222454 6788999999999999999999999988774
No 207
>PRK08068 transaminase; Reviewed
Probab=92.89 E-value=0.71 Score=37.10 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=35.7
Q ss_pred ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
++.++++- |- .-.| ...+.+-++++.++|++|++++|.||+..-|...+
T Consensus 167 ~~~~v~l~~P~-NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~ 216 (389)
T PRK08068 167 KAKLMYLNYPN-NPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDG 216 (389)
T ss_pred cceEEEEECCC-CCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCC
Confidence 45555554 62 2234 57778888999999999999999999987664343
No 208
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=92.89 E-value=0.35 Score=38.97 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=35.3
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++- -+++---...+++-++++.++|++|++++|.||+..-|
T Consensus 166 ~~k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~ 211 (396)
T PRK09147 166 RTQLLFVC-SPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEI 211 (396)
T ss_pred ccEEEEEc-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccccc
Confidence 45566653 44543234667899999999999999999999999876
No 209
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=92.77 E-value=0.26 Score=40.62 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=32.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.++.++++|-...-.|...+ ++++.++|+++|+++|.|+.+..
T Consensus 148 ~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~ 190 (398)
T PRK08249 148 KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFAT 190 (398)
T ss_pred CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCc
Confidence 45678888754443454443 78899999999999999999873
No 210
>PRK07683 aminotransferase A; Validated
Probab=92.74 E-value=0.68 Score=37.33 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
...+.+-++++.++|+++|+++|.||+...+
T Consensus 176 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~ 206 (387)
T PRK07683 176 VTLSKEELQDIADVLKDKNIFVLSDEIYSEL 206 (387)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEecccccc
Confidence 4567788999999999999999999999877
No 211
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=92.62 E-value=0.59 Score=37.74 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=35.5
Q ss_pred eEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 42 PCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 42 iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
..++++. .+.+ .| ...+.+-++++.++|+++|+++|.||+...|-..+
T Consensus 169 ~~~v~~~-~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 217 (401)
T TIGR01264 169 TAALIVN-NPSNPCG-SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSG 217 (401)
T ss_pred ceEEEEc-CCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCC
Confidence 3445542 2233 34 35678889999999999999999999999885454
No 212
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=92.58 E-value=0.26 Score=40.47 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=32.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|-...-.|...+ ++++.++|+++|+++|+||.+.
T Consensus 143 ~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a 184 (391)
T TIGR01328 143 DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFA 184 (391)
T ss_pred cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence 46778888865443443332 7899999999999999999985
No 213
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=92.57 E-value=0.5 Score=39.70 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=37.1
Q ss_pred CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.++.++++- |- .--| ...+.+.++++.++|++|++.+|.||+...+-..+
T Consensus 190 ~~~k~v~l~nP~-NPTG-~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~ 240 (468)
T PLN02450 190 LKVKGVLITNPS-NPLG-TTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS 240 (468)
T ss_pred CCeeEEEEecCC-CCCC-cccCHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence 366666655 42 1123 46788899999999999999999999998763333
No 214
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=92.56 E-value=0.4 Score=39.25 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=32.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.++.++++|-...-.|. ..-++++.++|+++|+++|+||.+..
T Consensus 145 ~~tklV~ie~p~NPtg~----~~dl~~I~~la~~~gi~lIvD~a~a~ 187 (388)
T PRK07811 145 PRTKLIWVETPTNPLLS----ITDIAALAELAHDAGAKVVVDNTFAS 187 (388)
T ss_pred cCCeEEEEECCCCCcce----ecCHHHHHHHHHHcCCEEEEECCCCc
Confidence 46778888854332232 24588999999999999999999763
No 215
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=92.54 E-value=0.52 Score=38.91 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+.+++.++++ +..++++ ++.-| -..=++++.++|++||+++|+|+.++ +|-.+
T Consensus 158 ~~le~~l~~~--------~~klVi~~~~~~g-------~~~dl~~l~~la~~~g~~livD~Aha-~G~~~ 211 (416)
T PRK13034 158 DEVEELAKEH--------KPKLIIAGFSAYP-------RELDFARFREIADEVGALLMVDMAHI-AGLVA 211 (416)
T ss_pred HHHHHHHhhc--------CCeEEEECCCccc-------cccCHHHHHHHHHHcCCEEEEeCccc-ccCcc
Confidence 3456666542 3356677 44432 22246688889999999999999876 44443
No 216
>KOG1359|consensus
Probab=92.53 E-value=0.13 Score=42.67 Aligned_cols=68 Identities=25% Similarity=0.297 Sum_probs=46.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccc-cccCccchhhhhcCCCCCcCEE--Eeec
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGF-GRVGTHWWAFQLQGDDIIPDIV--TVVW 113 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGf-gRtG~~~~~~~~~g~~v~PDiv--t~gK 113 (114)
.+.--++.|.+-+-.|-+.| ++++.+|+++||.|+.+||.. ||| |.||. .--|.+|..-.+|++ |+||
T Consensus 192 ~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr--Gt~E~~~vm~~vdiinsTLgK 263 (417)
T KOG1359|consen 192 MRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR--GTAEEFGVMGDVDIINSTLGK 263 (417)
T ss_pred heEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC--ChHHHhCCCCcceehhhhhhh
Confidence 46666677766553333333 678999999999999999986 555 88886 445667722356665 3455
No 217
>PRK06460 hypothetical protein; Provisional
Probab=92.46 E-value=0.32 Score=39.68 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=32.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.++..+++|....-.|...+. +++.++|+++|+++|+||++..
T Consensus 129 ~~tklV~l~sp~NPtG~v~d~----~~I~~la~~~g~~vivDea~~~ 171 (376)
T PRK06460 129 KRYDVVFVENITNPLLRVVDI----TELSKVCKENGSILIVDATFST 171 (376)
T ss_pred CCceEEEEECCCCCCCcccCH----HHHHHHHHHcCCEEEEECCcCc
Confidence 466788887766555654443 4789999999999999999763
No 218
>PTZ00377 alanine aminotransferase; Provisional
Probab=92.43 E-value=0.53 Score=39.38 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=34.8
Q ss_pred ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.+ ++.-| +.-.| ...+.+-+++|.++|++|++++|.||+..-+.
T Consensus 218 ~~k~l~l~~P-~NPTG-~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~ 264 (481)
T PTZ00377 218 TPRALVVINP-GNPTG-QVLTRDVMEEIIKFCYEKGIVLMADEVYQENI 264 (481)
T ss_pred CeeEEEEECC-CCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence 5654 45555 22234 46688899999999999999999999998763
No 219
>PRK07503 methionine gamma-lyase; Provisional
Probab=92.41 E-value=0.26 Score=40.60 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=32.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.++.++++|....-.|... + ++++.++|+++|+++|.|+.+..
T Consensus 149 ~~tklV~le~p~NPtG~~~-d---i~~I~~la~~~gi~lIvD~a~a~ 191 (403)
T PRK07503 149 DKTRMVYFETPANPNMRLV-D---IAAVAEIAHGAGAKVVVDNTYCT 191 (403)
T ss_pred ccCcEEEEeCCCCCCCeee-C---HHHHHHHHHHcCCEEEEECCCcc
Confidence 4667888875444345433 2 78999999999999999999863
No 220
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=92.40 E-value=1.1 Score=35.72 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=35.1
Q ss_pred eEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 42 PCAF-FAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 42 iAAv-iiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+.++ +.-| +.-.| ...+.+-++++.++|++|++.+|.||+...|-..+
T Consensus 142 ~~~v~~~~P-~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~ 190 (354)
T PRK06358 142 IDLVFLCNP-NNPTG-QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN 190 (354)
T ss_pred CCEEEEeCC-CCCCC-CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCc
Confidence 4444 5556 22234 45678889999999999999999999998875433
No 221
>PRK07050 cystathionine beta-lyase; Provisional
Probab=92.36 E-value=0.58 Score=38.50 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=32.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|-... ...+..-++++.++|+++|+++|+||.++
T Consensus 149 ~~tklV~le~p~N----p~~~~~di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 149 PNTRLIWLEAPGS----VTMEVPDVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred CCCeEEEEECCCC----CCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence 4567788884432 22466779999999999999999999975
No 222
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=92.34 E-value=0.48 Score=38.02 Aligned_cols=47 Identities=15% Similarity=0.079 Sum_probs=35.5
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+..++++-+-+.-.|. ..+.+-++++.++|++||+++|.||+..-|-
T Consensus 165 ~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (388)
T PRK07366 165 QARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLV 211 (388)
T ss_pred cceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcc
Confidence 4455666553332454 5678889999999999999999999998774
No 223
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=92.27 E-value=0.37 Score=39.00 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCeEEEccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t 85 (114)
++++.++|++||+++|.|+.|.
T Consensus 168 ~~~i~~~a~~~gi~vivD~a~~ 189 (363)
T TIGR01437 168 VEDAAQVAQEHNLPLIVDAAAE 189 (363)
T ss_pred HHHHHHHHHHcCCeEEEECCCC
Confidence 4689999999999999999996
No 224
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=92.24 E-value=0.31 Score=38.93 Aligned_cols=47 Identities=11% Similarity=0.222 Sum_probs=36.1
Q ss_pred CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++- | +.-.| ...+.+-++++.++|++||+.+|.||+...+.
T Consensus 163 ~~~~~v~i~~P-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~ 210 (383)
T TIGR03540 163 KKAKLMFINYP-NNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT 210 (383)
T ss_pred ccceEEEEeCC-CCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence 355666666 5 22234 56688999999999999999999999998663
No 225
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=92.24 E-value=0.36 Score=38.62 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=35.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++..-+.-.|. ..+.+-++++.++|++||+.+|.||+...|-
T Consensus 165 ~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~ 212 (385)
T PRK09276 165 KKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIA 212 (385)
T ss_pred ccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhhee
Confidence 35556666622333454 5678888999999999999999999998773
No 226
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=92.04 E-value=0.61 Score=37.43 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=29.2
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+...++++-..+..|...+ ++++.++|+++|+++|+||.+.
T Consensus 146 ~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 146 PPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccc
Confidence 4556666533333454333 6688899999999999999987
No 227
>PLN02409 serine--glyoxylate aminotransaminase
Probab=92.03 E-value=0.34 Score=39.56 Aligned_cols=41 Identities=17% Similarity=0.034 Sum_probs=28.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHH--HHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKH--VRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~l--c~~~gillI~DEV~t 85 (114)
++.++++--.....|...+ ++++.++ |+++|+++|+|++++
T Consensus 137 ~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s 179 (401)
T PLN02409 137 KIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS 179 (401)
T ss_pred CccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc
Confidence 4556666444444566654 5556666 999999999999987
No 228
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=91.98 E-value=0.39 Score=38.19 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=37.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.++.++++...+.-.| ...+.+-++++.++|+++|+++|.||+...|.-.+
T Consensus 147 ~~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~ 197 (364)
T PRK07865 147 QRPALIWLNSPSNPTG-RVLGVDHLRKVVAWARERGAVVASDECYLELGWDA 197 (364)
T ss_pred ccceEEEEcCCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCC
Confidence 4567777774333234 44566888999999999999999999998774433
No 229
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=91.89 E-value=0.36 Score=39.20 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=34.9
Q ss_pred ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++ +-+.+ .| ...+.+-++++.++|++|++++|.||+...|-
T Consensus 176 ~~k~i~l-~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~ 222 (409)
T PRK07590 176 KVDIIYL-CFPNNPTG-TVLTKEQLKAWVDYAKENGSLILFDAAYEAFI 222 (409)
T ss_pred CceEEEE-eCCCCCcC-CcCCHHHHHHHHHHHHHcCeEEEEEccchhhc
Confidence 4555655 23344 34 46678889999999999999999999998773
No 230
>PRK09148 aminotransferase; Validated
Probab=91.87 E-value=0.57 Score=38.12 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=34.0
Q ss_pred ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+..++++. |- .-.| ...+.+-++++.++|++||+++|.||+...|.
T Consensus 165 ~~~~v~l~~P~-NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~ 211 (405)
T PRK09148 165 KPIALIVNYPS-NPTA-YVADLDFYKDVVAFAKKHDIIILSDLAYSEIY 211 (405)
T ss_pred cceEEEEeCCC-CCCC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence 44444444 42 2234 55678899999999999999999999998763
No 231
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=91.85 E-value=0.25 Score=39.72 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCeEEEccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t 85 (114)
++++.++|++||+++|.|+.|+
T Consensus 137 ~~~i~~l~~~~~~~lI~D~a~a 158 (380)
T TIGR03588 137 MQAIAALAKKHGLKIIEDASHA 158 (380)
T ss_pred HHHHHHHHHHcCCEEEEECCCc
Confidence 7999999999999999999998
No 232
>PRK06290 aspartate aminotransferase; Provisional
Probab=91.85 E-value=0.53 Score=38.69 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=35.8
Q ss_pred CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
.++.++++. | ++---...+.+-++.+.++|++||+++|.||+...+
T Consensus 178 ~~~k~i~l~nP--~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~ 224 (410)
T PRK06290 178 EKAKLLYLNYP--NNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAAL 224 (410)
T ss_pred ccceEEEEECC--CCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhc
Confidence 355666666 6 332225668889999999999999999999999876
No 233
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=91.83 E-value=0.68 Score=37.41 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=31.9
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
+...+++++. +-.|- ..+.+-++++.++|+++|+++|+||...-
T Consensus 136 ~~~lIiitg~-s~~G~-v~~~~~L~~i~~la~~~~~~livDEAy~~ 179 (346)
T TIGR03576 136 GTSLVVITGS-TMDLK-VVSEEDLKRVIKQAKSKEAIVLVDDASGA 179 (346)
T ss_pred CceEEEEECC-CCCCc-ccCHHHHHHHHHHHHHcCCEEEEECCccc
Confidence 3456777653 21222 34577899999999999999999999863
No 234
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=91.81 E-value=0.59 Score=37.14 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=29.7
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++.++++.-..+..|.. .-++++.++|+++|+++|+||.+.
T Consensus 139 ~~~lv~l~~p~n~tG~~----~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 139 PPALALLTHVDGNYGNL----HDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CceEEEEECCCCCCeee----ccHHHHHHHHHHcCCeEEEECCcc
Confidence 56666665433333432 236799999999999999999986
No 235
>PLN02509 cystathionine beta-lyase
Probab=91.75 E-value=0.59 Score=39.76 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=32.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|-...-.|. ..-++++.++|++||+++|+||.+.
T Consensus 216 ~~TklV~lesPsNPtG~----i~Dl~~I~~lAk~~g~~lIVD~A~a 257 (464)
T PLN02509 216 PQTKLVWLESPTNPRQQ----ISDIRKIAEMAHAQGALVLVDNSIM 257 (464)
T ss_pred cCCeEEEEECCCCCCCC----HHHHHHHHHHHHHcCCEEEEECCcc
Confidence 46678888876544343 3568999999999999999999974
No 236
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=91.74 E-value=1.1 Score=38.09 Aligned_cols=56 Identities=9% Similarity=-0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
-+.+++.+.+. .+ ..+.+++..|-.+ .+-..+=++++.++|++||+.+|.|+.+..
T Consensus 191 ~e~Le~aIt~~--~~---kai~~Vv~Tp~t~----~~g~~ddL~eIa~la~k~gI~lIvDaAyg~ 246 (444)
T TIGR03531 191 VEDIERAIEEI--GP---DNILCVLSTTSCF----APRSPDDIEEIAKICANYDIPHIVNNAYGL 246 (444)
T ss_pred HHHHHHHHHhc--cC---CCEEEEEEcCCcC----CCcchhCHHHHHHHHHHcCCEEEEECcCcC
Confidence 34566666643 12 4677777666422 123456789999999999999999999974
No 237
>PRK08912 hypothetical protein; Provisional
Probab=91.72 E-value=0.38 Score=38.58 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=32.6
Q ss_pred ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++. | +.-.| ...+.+-++++.++|++|++++|.||+...+
T Consensus 159 ~~~~v~l~~p-~NPtG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~ 204 (387)
T PRK08912 159 RTKAVLLNNP-LNPAG-KVFPREELALLAEFCQRHDAVAICDEVWEHV 204 (387)
T ss_pred cceEEEEeCC-CCCcC-cccCHHHHHHHHHHHHHCCeEEEEhhhhhhc
Confidence 44444444 4 22234 4556688899999999999999999998765
No 238
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=91.61 E-value=1.2 Score=35.47 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=42.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.++..+.+--+....|...| ++++.++|+++|+++++|=+|+ +|..- .-.+. ..+|+++.+
T Consensus 138 ~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~---id~~~----~~~D~~~~s 198 (371)
T PF00266_consen 138 PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP---IDLDE----LGADFLVFS 198 (371)
T ss_dssp TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS-----TTT----TTESEEEEE
T ss_pred cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-ccccc---ccccc----cccceeeec
Confidence 46777777777666777665 7799999999999999998887 43332 12232 446888765
No 239
>PRK06767 methionine gamma-lyase; Provisional
Probab=91.60 E-value=0.4 Score=39.12 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=32.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+..++++|-...-.|...+ ++++.++|+++|+++|+||.++
T Consensus 145 ~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a 186 (386)
T PRK06767 145 PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFC 186 (386)
T ss_pred cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCc
Confidence 45678888865444454443 6899999999999999999975
No 240
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=91.49 E-value=0.43 Score=39.10 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=31.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|-...-.|...+ ++++.++|+++|+++|+||.+.
T Consensus 135 ~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 135 QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCc
Confidence 45778888754443454433 5789999999999999999986
No 241
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=91.44 E-value=0.46 Score=39.03 Aligned_cols=44 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
.+..++++|....-.|...+ ++++.++|+++|+++|+||.+...
T Consensus 136 ~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~ 179 (386)
T PRK08045 136 EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP 179 (386)
T ss_pred cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc
Confidence 45677888754444454443 679999999999999999998643
No 242
>PRK08363 alanine aminotransferase; Validated
Probab=91.38 E-value=1.1 Score=36.13 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=32.3
Q ss_pred ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++ .| +.-.| ...+.+-++++.++|+++|+++|.||+...+
T Consensus 166 ~~~~v~l~~p-~NPtG-~~~~~~~~~~l~~~a~~~~~~li~Deay~~~ 211 (398)
T PRK08363 166 KTKAIAVINP-NNPTG-ALYEKKTLKEILDIAGEHDLPVISDEIYDLM 211 (398)
T ss_pred ceEEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhh
Confidence 3444444 44 22234 3456788999999999999999999998765
No 243
>PRK09082 methionine aminotransferase; Validated
Probab=91.36 E-value=0.43 Score=38.37 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=33.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++...+.--|. ..+++-++++.++|++|++++|.||+...+
T Consensus 163 ~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~li~De~y~~~ 208 (386)
T PRK09082 163 RTRLIILNTPHNPSGT-VWSAADMRALWQLIAGTDIYVLSDEVYEHI 208 (386)
T ss_pred cceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCEEEEEehhhhhh
Confidence 4556666433333343 346788999999999999999999998765
No 244
>PRK07582 cystathionine gamma-lyase; Validated
Probab=91.30 E-value=0.69 Score=37.51 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=29.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++..+++|-.....|.. . -++++.++|+++|+++|+||.+.
T Consensus 131 ~~t~lV~le~p~NPtg~v-~---di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 131 AGADLVLAETPSNPGLDV-C---DLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred cCceEEEEECCCCCCCCc-c---CHHHHHHHHHHcCCEEEEECCCC
Confidence 356667777443333322 2 27999999999999999999974
No 245
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=91.20 E-value=0.65 Score=37.60 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCeEEEccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t 85 (114)
++++.++|+++|+++|.||++.
T Consensus 182 ~~~I~~la~~~~~~livD~a~~ 203 (416)
T PRK00011 182 FKRFREIADEVGAYLMVDMAHI 203 (416)
T ss_pred HHHHHHHHHHcCCEEEEECcch
Confidence 6899999999999999999975
No 246
>PRK06107 aspartate aminotransferase; Provisional
Probab=91.17 E-value=1.2 Score=36.09 Aligned_cols=49 Identities=8% Similarity=-0.026 Sum_probs=35.1
Q ss_pred ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHh-CCeEEEccccccccccC
Q psy1628 41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAA-GGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfgRtG 91 (114)
++.++++. |. .-.| ...+.+-++++.++|+++ ++.+|.||+...+...+
T Consensus 166 ~~~~v~l~~p~-NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~ 216 (402)
T PRK06107 166 RTRWLILNAPS-NPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDD 216 (402)
T ss_pred CceEEEEECCC-CCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCC
Confidence 44445544 42 2223 677888999999999998 99999999998663333
No 247
>PRK05957 aspartate aminotransferase; Provisional
Probab=91.15 E-value=0.6 Score=37.69 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=33.7
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++-..+...| ...+.+-++++.++|+++|+++|.||+...|-
T Consensus 160 ~~klv~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~ 206 (389)
T PRK05957 160 KTRAIVTISPNNPTG-VVYPEALLRAVNQICAEHGIYHISDEAYEYFT 206 (389)
T ss_pred CceEEEEeCCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence 454554433233334 45567789999999999999999999988763
No 248
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=91.14 E-value=0.73 Score=37.70 Aligned_cols=48 Identities=6% Similarity=-0.130 Sum_probs=37.3
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh-CCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA-GGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfg 88 (114)
++.++++-|-+.+---...+.+.++++.++|+++ ++++|.||+..-|.
T Consensus 211 ~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~ 259 (431)
T PRK15481 211 GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLS 259 (431)
T ss_pred CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhc
Confidence 4556677776555323566789999999999999 99999999988763
No 249
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=91.11 E-value=0.82 Score=36.12 Aligned_cols=44 Identities=18% Similarity=0.075 Sum_probs=33.4
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
..++.-|- .--|. ..+.+-++++.++|+++|+++|.||+...+.
T Consensus 127 ~v~l~nP~-NPTG~-~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~ 170 (330)
T PRK05664 127 VLVVVNPN-NPTGR-RFDPARLLAWHARLAARGGWLVVDEAFMDNT 170 (330)
T ss_pred EEEEeCCc-CCCCC-ccCHHHHHHHHHHHHhcCCEEEEECCcccCC
Confidence 45777774 22344 5566678999999999999999999987763
No 250
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=91.05 E-value=1.2 Score=36.22 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=34.9
Q ss_pred ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
++.++++ -| +.-.| ...+.+-++++.++|+++|+++|.||+...|-..+
T Consensus 177 ~~~~i~~~~p-~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~ 226 (412)
T PTZ00433 177 RTKALIMTNP-SNPCG-SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG 226 (412)
T ss_pred CceEEEEeCC-CCCCC-cccCHHHHHHHHHHHHHcCCeEEEeccccccccCC
Confidence 4445554 33 22235 45567788999999999999999999998874333
No 251
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=90.99 E-value=0.73 Score=36.45 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=37.0
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE---Eeec
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV---TVVW 113 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv---t~gK 113 (114)
+..++++.-.+.-.|... +.+-+.++.+.|+ +|+++|.||+...+...+....+....+ ..++++ +++|
T Consensus 154 ~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK 225 (367)
T PRK02731 154 RTRLVFIANPNNPTGTYL-PAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVA--KFPNVVVTRTFSK 225 (367)
T ss_pred CCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHh--hcCCEEEEeeehH
Confidence 445555543333345444 4444555555553 5999999999887754332111223333 345666 4455
No 252
>PLN02368 alanine transaminase
Probab=90.92 E-value=0.56 Score=38.84 Aligned_cols=46 Identities=22% Similarity=0.043 Sum_probs=35.3
Q ss_pred ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.+ ++.-|- .-.| ...+.+-++++.++|++|++.+|.||+..-+-
T Consensus 210 ~~k~l~l~nP~-NPTG-~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 210 TVRAMVIINPG-NPTG-QCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CeEEEEEECCC-CCCC-ccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 4554 455672 2234 46688999999999999999999999998774
No 253
>KOG0257|consensus
Probab=90.84 E-value=0.36 Score=41.02 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=29.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
-..+.+-|+.|.++|++||.++|.|||..-+--.|
T Consensus 187 kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~ 221 (420)
T KOG0257|consen 187 KVFSREELERIAELCKKHGLLVISDEVYEWLVYDG 221 (420)
T ss_pred cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC
Confidence 56788999999999999999999999987654444
No 254
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=90.82 E-value=0.55 Score=37.02 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=29.2
Q ss_pred ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+..++++ .| ....|...+.. ++.++|+++|+++|.||++.+|.
T Consensus 158 ~~~~v~~~~p-~nptG~~~~~~----~l~~l~~~~~~~li~De~y~~~~ 201 (361)
T PRK00950 158 KTKVIFLCTP-NNPTGNLIPEE----DIRKILESTDALVFVDEAYVEFA 201 (361)
T ss_pred CCCEEEEeCC-CCCCCCCcCHH----HHHHHHHHCCcEEEEECchhhhC
Confidence 3444444 45 33345554443 57778899999999999999884
No 255
>PRK12414 putative aminotransferase; Provisional
Probab=90.70 E-value=0.62 Score=37.54 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=34.0
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++..-+.-.|. ..+++-++++.++|++||+++|.||+..-|
T Consensus 162 ~~~~v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~ 207 (384)
T PRK12414 162 RTRMIIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHV 207 (384)
T ss_pred ccEEEEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhc
Confidence 5556666432333454 446778999999999999999999998765
No 256
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=90.66 E-value=0.81 Score=36.72 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=32.4
Q ss_pred CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628 40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~ 92 (114)
+++.++++ +.+.+ .|. ..+.+-++++.++|++ ++++|.||+...|...|.
T Consensus 154 ~~~~~i~l-~~P~NPtG~-~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~ 204 (369)
T PRK08153 154 ENAPLVYL-ANPDNPMGS-WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA 204 (369)
T ss_pred cCCcEEEE-eCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc
Confidence 34555555 33333 354 4455666777777774 999999999998865553
No 257
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=90.48 E-value=0.64 Score=37.60 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=32.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.++.++++|....- ..+..-++++.++|+++|+++|.||+.
T Consensus 135 ~~tklv~le~P~NP----~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 135 PNTKAIFIETPTNP----LMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred cCceEEEEECCCCC----CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 46678888754321 345677999999999999999999997
No 258
>PRK07671 cystathionine beta-lyase; Provisional
Probab=90.40 E-value=0.65 Score=37.93 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=31.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++|--..-.|.. .-++++.++|+++|+++|+||.+.
T Consensus 133 ~~tklV~le~P~NPtg~~----~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 133 PNTKAIYVETPTNPLLKI----TDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CCCeEEEEECCCCCCCcc----cCHHHHHHHHHHcCCEEEEECCCC
Confidence 467788887543323322 238899999999999999999975
No 259
>PRK08637 hypothetical protein; Provisional
Probab=90.31 E-value=1 Score=36.36 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=36.0
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCeEEEccccccccccC
Q psy1628 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRA-----AGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~-----~gillI~DEV~tGfgRtG 91 (114)
...+++=|-+.+---...+++-++++.++|++ |++++|.||+...|-..+
T Consensus 146 ~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~ 200 (388)
T PRK08637 146 GKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYED 200 (388)
T ss_pred CCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCC
Confidence 34445555545433367788889999998875 999999999998884444
No 260
>PRK09265 aminotransferase AlaT; Validated
Probab=90.26 E-value=0.7 Score=37.40 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=33.7
Q ss_pred ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.+ ++.-| ..-.| ...+.+-++++.++|+++|+++|.||+...|-
T Consensus 168 ~~~~v~l~~P-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 214 (404)
T PRK09265 168 RTKAIVIINP-NNPTG-AVYSKELLEEIVEIARQHNLIIFADEIYDKIL 214 (404)
T ss_pred cceEEEEECC-CCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhhhcc
Confidence 4444 44445 32234 35567888999999999999999999998774
No 261
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=90.26 E-value=1.4 Score=34.72 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=28.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
...+.+-++++.++|+++++++|.||+-.-|.
T Consensus 137 ~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~ 168 (332)
T PRK06425 137 NLISRDSLLTISEICRKKGALLFIDEAFIDFV 168 (332)
T ss_pred CccCHHHHHHHHHHHHHcCCEEEEecchhccc
Confidence 35678889999999999999999999988774
No 262
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=90.25 E-value=0.67 Score=37.57 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=35.3
Q ss_pred ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++- -+.+ .| ...+.+-++++.++|++|++++|.||+..-|-
T Consensus 173 ~~~~i~l~-nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~ 219 (402)
T TIGR03542 173 KIDIIYLC-SPNNPTG-TVLTKEQLKELVDYANEHGSLILFDAAYSAFI 219 (402)
T ss_pred CceEEEEe-CCCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhc
Confidence 45566653 3333 34 46777889999999999999999999998874
No 263
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=90.20 E-value=1.4 Score=36.96 Aligned_cols=70 Identities=21% Similarity=0.251 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCCCCCCCce-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628 22 HLFFERIFLSASLYPFLFLYP-CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~i-AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~ 100 (114)
-+.+++.++++ .++ +..++....+ .|+..| ++++.++|++||.++|+|=|-+ +| |. .+-.+.|
T Consensus 119 p~~v~~~L~~~-------~~~~~V~~vH~ETS-TGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~G--g~-~~~vd~w 182 (383)
T COG0075 119 PEEVEEALDKD-------PDIKAVAVVHNETS-TGVLNP----LKEIAKAAKEHGALLIVDAVSS-LG--GE-PLKVDEW 182 (383)
T ss_pred HHHHHHHHhcC-------CCccEEEEEeccCc-ccccCc----HHHHHHHHHHcCCEEEEEeccc-CC--Cc-ccchhhc
Confidence 35677777754 355 3334443333 354443 5789999999999999998877 43 22 3445566
Q ss_pred CCCCCcCEEEe
Q psy1628 101 GDDIIPDIVTV 111 (114)
Q Consensus 101 g~~v~PDivt~ 111 (114)
| + |+++-
T Consensus 183 g--i--Dv~it 189 (383)
T COG0075 183 G--I--DVAIT 189 (383)
T ss_pred C--c--cEEEe
Confidence 6 3 55554
No 264
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=90.05 E-value=0.91 Score=37.00 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=30.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.+..++++|-...-.|... -++++.++|+++|+++|+||..
T Consensus 135 ~~TklV~lesP~NPtg~~~----di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 135 EDTDIVYIETPTNPLMVEF----DIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred cCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCC
Confidence 3566777776544333222 5889999999999999999984
No 265
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=89.94 E-value=0.72 Score=38.17 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=31.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.+...+++|-...-.|.. . =++++.++|+++|+++|+||++..
T Consensus 144 ~~tklV~l~~P~NPtG~v-~---dl~~I~~la~~~gi~vIvD~a~a~ 186 (405)
T PRK08776 144 QSPKLVLIETPSNPLLRI-T---DLRFVIEAAHKVGALTVVDNTFLS 186 (405)
T ss_pred cCCeEEEEECCCCCCCcc-C---CHHHHHHHHHHcCCEEEEECCCcc
Confidence 356677777544334443 2 278999999999999999999863
No 266
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=89.93 E-value=0.4 Score=38.89 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCeEEEccccc-cc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV-GF 87 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t-Gf 87 (114)
++++.++|+++|+++|.|+.++ |.
T Consensus 137 ~~~i~~~a~~~gi~vi~D~a~a~g~ 161 (379)
T PRK11658 137 LDAIRAIGERYGIPVIEDAAHAVGT 161 (379)
T ss_pred HHHHHHHHHHcCCeEEEECCCccCC
Confidence 5789999999999999999998 44
No 267
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=89.92 E-value=0.67 Score=37.33 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=34.8
Q ss_pred ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++- -+.+ .| ...+.+-++++.++|++|++++|.||+..-+.
T Consensus 165 ~~k~i~l~-~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~ 211 (393)
T TIGR03538 165 RCQLLFVC-SPGNPTG-AVLSLDTLKKLIELADQYGFIIASDECYSELY 211 (393)
T ss_pred cceEEEEe-CCCCCcC-cccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence 45565553 3344 34 46678899999999999999999999998763
No 268
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=89.85 E-value=1 Score=36.10 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCeEEEcccc-ccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQ-VGF 87 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~-tGf 87 (114)
++++.++|+++|+++|.||++ .|+
T Consensus 178 ~~~I~~l~~~~~~~li~D~a~~~g~ 202 (402)
T cd00378 178 FKRFREIADEVGAYLLVDMAHVAGL 202 (402)
T ss_pred HHHHHHHHHhcCCEEEEEccchhhh
Confidence 788999999999999999996 444
No 269
>PRK06234 methionine gamma-lyase; Provisional
Probab=89.76 E-value=0.71 Score=37.94 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=31.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~t 85 (114)
.+..++++|-...-.|...+ ++++.++|+++ |+++|+||...
T Consensus 148 ~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~ 191 (400)
T PRK06234 148 ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC 191 (400)
T ss_pred cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC
Confidence 35678888865443454333 89999999997 99999999976
No 270
>PRK05942 aspartate aminotransferase; Provisional
Probab=89.62 E-value=0.85 Score=36.78 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=35.2
Q ss_pred ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++- | +.-.| ...+.+-++++.++|+++|+.+|.||+..-|-
T Consensus 170 ~~k~i~l~~P-~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~ 216 (394)
T PRK05942 170 QAKILYFNYP-SNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELA 216 (394)
T ss_pred cceEEEEcCC-CCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence 55566665 5 33234 56778889999999999999999999987653
No 271
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=89.59 E-value=0.83 Score=38.86 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.-+|+++++. ++ ++|.-++..-.-.+.|-.|.+-.=+++++++|++|++.+++|-..
T Consensus 172 ~kLe~lidev--G~---~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 172 EKLERLIDEV--GA---DNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred HHHHHHHHHh--Cc---ccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 3577888875 45 677666655544556779999999999999999999999999654
No 272
>PRK03321 putative aminotransferase; Provisional
Probab=89.45 E-value=1.8 Score=34.02 Aligned_cols=65 Identities=20% Similarity=0.209 Sum_probs=35.0
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 111 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~ 111 (114)
+..++++...+.-.|...+ .+ .+.++|++ +++++|.||+...|...+....+.+... -.++++++
T Consensus 145 ~~~~v~l~~p~NPtG~~~~-~~---~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~ 211 (352)
T PRK03321 145 RTRLIFVCNPNNPTGTVVT-PA---ELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVL 211 (352)
T ss_pred CCCEEEEeCCCCCcCCCcC-HH---HHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh--hCCCEEEE
Confidence 4445555433333465554 33 44444444 6999999999988855442111222222 34677743
No 273
>PRK08064 cystathionine beta-lyase; Provisional
Probab=89.42 E-value=0.86 Score=37.33 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=32.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.+..++++|-...-.|... + ++++.++|+++|+++|+||.+..
T Consensus 137 ~~tklV~l~~p~NptG~~~-d---l~~I~~la~~~g~~vvvD~a~~~ 179 (390)
T PRK08064 137 PNTKLFYVETPSNPLLKVT-D---IRGVVKLAKAIGCLTFVDNTFLT 179 (390)
T ss_pred CCceEEEEECCCCCCcEec-c---HHHHHHHHHHcCCEEEEECCCCc
Confidence 4677888885544345443 2 67899999999999999999754
No 274
>PRK05839 hypothetical protein; Provisional
Probab=89.39 E-value=0.79 Score=36.85 Aligned_cols=45 Identities=13% Similarity=-0.074 Sum_probs=33.4
Q ss_pred eEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 42 PCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 42 iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+.++++ +-+.+ .| ...+.+.++++.++|+++|+.+|.||+..-|.
T Consensus 156 ~k~v~i-~nP~NPTG-~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~ 201 (374)
T PRK05839 156 VDLVIL-NSPNNPTG-RTLSLEELIEWVKLALKHDFILINDECYSEIY 201 (374)
T ss_pred ccEEEE-eCCCCCcC-cccCHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence 444444 23343 34 35578889999999999999999999988773
No 275
>PRK08354 putative aminotransferase; Provisional
Probab=89.25 E-value=0.89 Score=35.55 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=34.6
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
..++.-|- .--| ...+.+-++++.++|+++|+.+|.||+...|.
T Consensus 120 ~vi~~~P~-NPTG-~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~ 163 (311)
T PRK08354 120 VVFFCNPN-NPDG-KFYNFKELKPLLDAVEDRNALLILDEAFIDFV 163 (311)
T ss_pred EEEEecCC-CCCC-CccCHHHHHHHHHHhhhcCcEEEEeCcchhcc
Confidence 45666773 2234 46777889999999999999999999998884
No 276
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=89.24 E-value=0.7 Score=37.72 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCeEEEccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t 85 (114)
++++.++|++||+++|.|+.++
T Consensus 135 ~~~I~~la~~~~i~vIeDaa~~ 156 (376)
T TIGR02379 135 MDTIMALANKHQLFVIEDAAQG 156 (376)
T ss_pred HHHHHHHHHHCCCEEEEECccc
Confidence 5699999999999999999987
No 277
>PLN02672 methionine S-methyltransferase
Probab=88.79 E-value=1.3 Score=41.63 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=38.3
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.+.++.-|-+.-.| ...+.+-++++.++|++||+++|.||+..++-..+
T Consensus 830 ~~I~L~nPnhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~ 878 (1082)
T PLN02672 830 PWVYISGPTINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDT 878 (1082)
T ss_pred CEEEEECcCCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCC
Confidence 35677778533235 46688899999999999999999999998775444
No 278
>PRK08114 cystathionine beta-lyase; Provisional
Probab=88.58 E-value=2 Score=35.89 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=41.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG--GVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g--illI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.+...+.+|...+-.|.+.+ ++++.++|+++| +++|+|..++ +|. . ++-.. .-.|+++.+
T Consensus 146 ~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~-~--~~pl~--~GaDivv~S 207 (395)
T PRK08114 146 PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGV-L--FKALD--FGIDISIQA 207 (395)
T ss_pred CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----ccc-c--cCHHH--cCCcEEEEc
Confidence 46788999976654444443 789999999985 9999999986 343 2 33332 346887754
No 279
>PRK06836 aspartate aminotransferase; Provisional
Probab=88.13 E-value=1.3 Score=35.76 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=35.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCeEEEccccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA------AGGVCVADEVQVGFGR 89 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~------~gillI~DEV~tGfgR 89 (114)
+++.++++.. +.+---...+.+-++++.++|++ ||+++|.||+...|..
T Consensus 167 ~~~~~v~~~~-p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~ 221 (394)
T PRK06836 167 PKTKAVIINS-PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY 221 (394)
T ss_pred cCceEEEEeC-CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence 3455666544 23333356677888999999999 8999999999987743
No 280
>KOG0258|consensus
Probab=88.05 E-value=1.5 Score=37.57 Aligned_cols=72 Identities=17% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhh
Q psy1628 22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQ 98 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~ 98 (114)
.+.+++.+++...+- +--+.+|+-|.--.| ...+++=++.+...|.++|+++++|||.. -....+++|+++.
T Consensus 200 ~~el~~~~~eA~k~i---~~r~lvvINPGNPTG--qvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfK 272 (475)
T KOG0258|consen 200 VAELERSVDEARKGI---NPRALVVINPGNPTG--QVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFK 272 (475)
T ss_pred HHHHHHHHHHHhccC---CceEEEEECCCCccc--hhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHH
Confidence 356788887764111 233778888853222 67889999999999999999999999964 3345664477665
No 281
>KOG0256|consensus
Probab=87.60 E-value=2.7 Score=36.11 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=36.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
.+|.++|+---+.--| ...+++-+..+.+++.++++-+|.|||.+|-
T Consensus 225 ~kVkGvlitNPsNPLG-~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 225 LKVKGVLITNPSNPLG-TTLSPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred CceeEEEEeCCCCCCC-CccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 6887777654322223 4567788999999999999999999999874
No 282
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=86.97 E-value=1.1 Score=38.75 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 64 LREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+++++++|+++|+++++|+.++ +|-.|
T Consensus 237 l~~i~eia~~~gA~L~VD~AH~-~Glig 263 (493)
T PRK13580 237 FAKLREIADEVGAVLMVDMAHF-AGLVA 263 (493)
T ss_pred HHHHHHHHHHcCCEEEEECchh-hceec
Confidence 7899999999999999999997 54443
No 283
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=86.64 E-value=2.1 Score=36.29 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=27.0
Q ss_pred CceEEEEEcccCCC--CCc-ccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628 40 LYPCAFFAESLQSC--GGQ-IIPPANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 40 ~~iAAviiEPv~g~--gG~-~~~~~~fl~~lr~lc~~~gillI~DE 82 (114)
.+.++++++-.... .|. ...+ ++++.++|++||+++|+|-
T Consensus 210 ~~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 210 ENTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDL 252 (454)
T ss_pred cCCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEEC
Confidence 46677666654321 132 1222 7889999999999999994
No 284
>KOG1360|consensus
Probab=86.56 E-value=1.9 Score=37.22 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
..+|+++++.. + ...--+-+|.+.+-.|.+.| +++|.+++++||++..+|||..
T Consensus 290 ~hL~~lL~~~~--~---svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA 343 (570)
T KOG1360|consen 290 DHLEQLLQSSP--K---SVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA 343 (570)
T ss_pred HHHHHHHHhCC--C---CCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh
Confidence 36788887753 3 33344557888776666665 5688999999999999999987
No 285
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=86.36 E-value=2.4 Score=35.73 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=30.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.+++++++-- +...|.. ..-++++.++|+++|+++++|+.+.
T Consensus 207 ~~t~~V~v~~-Pn~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~ 248 (481)
T PRK04366 207 EDTAALMLTN-PNTLGLF---ERNILEIAEIVHEAGGLLYYDGANL 248 (481)
T ss_pred cCCeEEEEeC-CCCcccc---chHHHHHHHHHHHcCCEEEEEecCh
Confidence 4566666632 3344543 2247899999999999999999984
No 286
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=86.27 E-value=3.6 Score=38.44 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.+++.++.+. ++++++++.-....+|...+ ++++.++|+++|+++++|=.|+
T Consensus 654 e~L~~~i~~~~------~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~ 706 (993)
T PLN02414 654 EELRKAAEAHK------DNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM 706 (993)
T ss_pred HHHHHHHhccC------CCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH
Confidence 45666666542 58888888654444555433 7899999999999999999884
No 287
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=86.23 E-value=1.9 Score=34.18 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=31.2
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
..++++-.-+.-.|... +.+-++++.++|++ ++++|.||+...|...+
T Consensus 155 ~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~ 202 (357)
T PRK14809 155 ERIVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERP 202 (357)
T ss_pred CcEEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCc
Confidence 34455543333345444 55557777778865 78999999999885443
No 288
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=86.18 E-value=1.5 Score=35.47 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=32.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++++-.-+.--| ...+.+-++++.++|++|++++|.||+..
T Consensus 178 ~~~~~i~l~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~ 222 (416)
T PRK09440 178 EDTGAICVSRPTNPTG-NVLTDEELEKLDALARQHNIPLLIDNAYG 222 (416)
T ss_pred CCceEEEEecCCCCCC-ccCCHHHHHHHHHHHHHcCCcEEEeCCcc
Confidence 3454444432233345 44578889999999999999999999984
No 289
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=86.16 E-value=2.3 Score=36.16 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=34.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
++.-|+.+|.+..-++ ..++ ++++.++|+++|+++|+|...+.
T Consensus 146 ~nTkavf~EtigNP~~-~v~D---ie~ia~iAh~~gvpliVDNT~at 188 (426)
T COG2873 146 ENTKAVFAETIGNPGL-DVLD---IEAIAEIAHRHGVPLIVDNTFAT 188 (426)
T ss_pred cccceEEEEeccCCCc-cccC---HHHHHHHHHHcCCcEEEecCCCc
Confidence 6899999999855433 4444 57899999999999999988763
No 290
>PRK04311 selenocysteine synthase; Provisional
Probab=85.99 E-value=3.4 Score=35.16 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=27.7
Q ss_pred CceEEEEEcccCCC--CCc-ccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628 40 LYPCAFFAESLQSC--GGQ-IIPPANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 40 ~~iAAviiEPv~g~--gG~-~~~~~~fl~~lr~lc~~~gillI~DE 82 (114)
.+.++++++-.... -|. ..++ ++++.++|++||+++|.|.
T Consensus 215 ~~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~ 257 (464)
T PRK04311 215 ENTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDL 257 (464)
T ss_pred ccCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEEC
Confidence 45677776654321 132 2223 7899999999999999998
No 291
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=85.46 E-value=1.4 Score=35.62 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCeEEEccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t 85 (114)
++++.++|+++|+.+|.|+.++
T Consensus 135 ~~~i~~la~~~~i~vIeD~a~a 156 (375)
T PRK11706 135 MDTIMALAKKHNLFVVEDAAQG 156 (375)
T ss_pred HHHHHHHHHHcCCEEEEECccc
Confidence 5799999999999999999997
No 292
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=84.96 E-value=2.1 Score=37.11 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=35.6
Q ss_pred CceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEcccccccc
Q psy1628 40 LYPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~tGfg 88 (114)
.++.+++ .-|- +--....+++-++++.++|++| ++++|.||+..-|.
T Consensus 239 ~~~kai~l~nP~--NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~ 288 (521)
T TIGR03801 239 PSIKALFVVNPS--NPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFV 288 (521)
T ss_pred CCCcEEEEeCCC--CCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhc
Confidence 4565555 4663 3222577789999999999987 99999999998773
No 293
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=84.49 E-value=5.5 Score=31.98 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=26.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+..|+++--..|. +. =+++++++|+++|+.+|-|=.|+
T Consensus 113 ~t~ai~~~h~~G~----~~---d~~~i~~~~~~~~i~lIeD~a~a 150 (363)
T PF01041_consen 113 KTKAILVVHLFGN----PA---DMDAIRAIARKHGIPLIEDAAQA 150 (363)
T ss_dssp TEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT
T ss_pred CccEEEEecCCCC----cc---cHHHHHHHHHHcCCcEEEccccc
Confidence 5577777766652 22 48899999999999999998887
No 294
>KOG2862|consensus
Probab=83.77 E-value=2.8 Score=35.08 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628 19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
++.++.+++-|++| ++-++.+--.-++-|+.- +.++...++|++|+.+|++|-|.+ +| |. -|.++
T Consensus 128 ~~~le~i~~~lsqh--------~p~~vfv~hgdsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-lg--gt-~F~mD 192 (385)
T KOG2862|consen 128 AVPLEEITEKLSQH--------KPKAVFVTHGDSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-LG--GT-EFEMD 192 (385)
T ss_pred CccHHHHHHHHHhc--------CCceEEEEecCccccccc---hHHHHHHHHhhcCCeEEEEechhh-cC--Cc-cceeh
Confidence 56677888888876 444555544333444433 356677889999999999999987 43 33 45666
Q ss_pred hcC
Q psy1628 99 LQG 101 (114)
Q Consensus 99 ~~g 101 (114)
.||
T Consensus 193 ewg 195 (385)
T KOG2862|consen 193 EWG 195 (385)
T ss_pred hhc
Confidence 666
No 295
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=83.30 E-value=2.6 Score=33.26 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=29.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++...+.-.|...+.+ -+.++.+.|+ +|+++|.||+...|-
T Consensus 150 ~~~~~v~i~~p~NPtG~~~~~~-~l~~~~~~~~-~~~~ii~De~y~~~~ 196 (359)
T PRK03158 150 EQTKIVWICNPNNPTGTYVNHE-ELLSFLESVP-SHVLVVLDEAYYEYV 196 (359)
T ss_pred CCCCEEEEeCCCCCCCCCCCHH-HHHHHHHhCC-CCcEEEEECchHhhc
Confidence 3555666654455567666554 3333433342 699999999997763
No 296
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=83.28 E-value=5.5 Score=33.07 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=30.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG-GVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g-illI~DEV~t 85 (114)
.++.++++|+...- -+.. -=++++.++++++| +++|+|....
T Consensus 139 ~~t~~v~~EspsNP-~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 139 PNTKLVFLESPSNP-TLEV---PDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp TTEEEEEEESSBTT-TTB------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred ccceEEEEEcCCCc-cccc---ccHHHHHHHHHHhCCceEEeecccc
Confidence 58999999987542 1222 23789999999999 9999998875
No 297
>PRK05968 hypothetical protein; Provisional
Probab=83.19 E-value=2.4 Score=34.69 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=31.2
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
+...+++|-..+ ...+..-++++.++|+++|+++|+|+.+..
T Consensus 147 ~tklV~ie~pt~----~~~~~~dl~~i~~la~~~gi~vivD~a~a~ 188 (389)
T PRK05968 147 GAKLLYLESPTS----WVFELQDVAALAALAKRHGVVTMIDNSWAS 188 (389)
T ss_pred cCCEEEEECCCC----CCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 345677774332 344557899999999999999999998753
No 298
>PRK05367 glycine dehydrogenase; Provisional
Probab=82.92 E-value=6.1 Score=36.74 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.+++.++++. .+++++++-- +...|....+ ++++.++|+++|+++.+|..+.
T Consensus 628 ~~L~~~i~~~~------~~la~V~it~-pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~ 680 (954)
T PRK05367 628 DDLRAKAEEHA------DNLAAIMITY-PSTHGVFEET---IREICEIVHEHGGQVYLDGANM 680 (954)
T ss_pred HHHHHHHhccC------CCeEEEEEEc-CCCCeeecCC---HHHHHHHHHHcCCEEEEECcCh
Confidence 34555565532 5788886654 2333443322 6899999999999999999996
No 299
>KOG0053|consensus
Probab=82.85 E-value=5.4 Score=33.92 Aligned_cols=60 Identities=18% Similarity=0.041 Sum_probs=40.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.++-+|.+|....- =+..+ =+++++++|+++|+++|+|+...+. . -++-+. .-.||++-+
T Consensus 161 ~~t~~V~~ESPsNP-ll~v~---DI~~l~~la~~~g~~vvVDnTf~~p----~---~~~pL~--lGADIV~hS 220 (409)
T KOG0053|consen 161 ENTKAVFLESPSNP-LLKVP---DIEKLARLAHKYGFLVVVDNTFGSP----Y---NQDPLP--LGADIVVHS 220 (409)
T ss_pred cCceEEEEECCCCC-ccccc---cHHHHHHHHhhCCCEEEEeCCcCcc----c---ccChhh--cCCCEEEEe
Confidence 47999999975431 11222 2678999999999999999988754 1 123233 347888754
No 300
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=82.30 E-value=4.1 Score=32.31 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=28.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++...+.-.|...+. +++.+++++++.++|+||+...|
T Consensus 148 ~~k~v~l~~p~NPtG~~~~~----~~l~~l~~~~~~~~ivDe~y~~~ 190 (351)
T PRK14807 148 QPKLVFLCNPNNPTGSVIER----EDIIKIIEKSRGIVVVDEAYFEF 190 (351)
T ss_pred CCCEEEEeCCCCCCCCCCCH----HHHHHHHHhCCCEEEEeCcchhh
Confidence 55566655333334544442 45677788888899999999877
No 301
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=81.85 E-value=3.3 Score=33.98 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=30.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEE--ccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVA--DEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~--DEV~t 85 (114)
++++++++..- ...|.+. -++++.++|+++|+++|+ |.+..
T Consensus 203 ~~t~~v~l~~p-n~tG~v~----~l~~I~~~a~~~~~~~iv~~d~~~~ 245 (447)
T PRK00451 203 DDTAAVVVQYP-NFFGVIE----DLEEIAEIAHAGGALFIVGVDPVSL 245 (447)
T ss_pred CCeEEEEEECC-CCCCeeC----CHHHHHHHHHHCCCEEEEEcChHHh
Confidence 46777777653 4456653 389999999999999988 75543
No 302
>PRK10534 L-threonine aldolase; Provisional
Probab=81.71 E-value=3 Score=32.46 Aligned_cols=42 Identities=17% Similarity=0.312 Sum_probs=31.1
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+..+++++- +.+ |. ..+.+.++++.++|++|++++++||...
T Consensus 129 ~~~lv~l~n-p~~-G~-v~~~~~l~~i~~~~~~~~~~lvvDEA~~ 170 (333)
T PRK10534 129 RTRLLSLEN-THN-GK-VLPREYLKQAWEFTRERNLALHVDGARI 170 (333)
T ss_pred cceEEEEec-CCC-Ce-ecCHHHHHHHHHHHHHcCCeEEeeHHHH
Confidence 455666663 333 54 4456778899999999999999999755
No 303
>PRK09275 aspartate aminotransferase; Provisional
Probab=81.54 E-value=3.3 Score=35.91 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=34.8
Q ss_pred CceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEcccccccc
Q psy1628 40 LYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfg 88 (114)
.++.++++ -| ++---...+++.++++.++|++ +++.+|.||+..-|.
T Consensus 240 ~~tkai~l~nP--~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~ 289 (527)
T PRK09275 240 PSIKALFLVNP--SNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV 289 (527)
T ss_pred CCCCEEEEeCC--cCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhc
Confidence 45666665 55 3322256688999999999965 599999999998773
No 304
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=81.23 E-value=3.1 Score=34.57 Aligned_cols=41 Identities=17% Similarity=0.117 Sum_probs=33.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
.....+++|--+.++| ...|.+.++.+.++||+||+.|=+|
T Consensus 129 ~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmD 169 (342)
T COG2008 129 APTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMD 169 (342)
T ss_pred CCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeec
Confidence 3556666666665666 6778899999999999999999998
No 305
>KOG1357|consensus
Probab=80.52 E-value=3.6 Score=35.77 Aligned_cols=76 Identities=21% Similarity=0.131 Sum_probs=53.0
Q ss_pred HHHHHHHHhcC--CCC--CCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchh
Q psy1628 23 LFFERIFLSAS--LYP--FLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWA 96 (114)
Q Consensus 23 ~~~e~~~~~~~--~~~--~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~ 96 (114)
..+||+|.+.- +.| +.--+.--+++|-+-+..|.+...+ ++.++++++...|++||-.++- |+||. ..
T Consensus 254 ~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp----~vvalkkkykayl~lDEAHSiGA~g~tGr--gv 327 (519)
T KOG1357|consen 254 QGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLP----EVVALKKKYKAYLYLDEAHSIGAMGATGR--GV 327 (519)
T ss_pred HHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccH----HHHHhhccccEEEEeeccccccccCCCCc--ce
Confidence 46777777653 111 0014567888998887777776655 6778999999999999998754 67886 45
Q ss_pred hhhcCCCCCc
Q psy1628 97 FQLQGDDIIP 106 (114)
Q Consensus 97 ~~~~g~~v~P 106 (114)
.+.+| +.|
T Consensus 328 ce~~g--~d~ 335 (519)
T KOG1357|consen 328 CEYFG--VDP 335 (519)
T ss_pred eeccC--CCc
Confidence 66777 554
No 306
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=79.66 E-value=8.6 Score=33.26 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=33.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
..+.+++.-....+-|.+.| ++++.++|+++|+.+.+|=.+.|.
T Consensus 264 ~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~ 307 (522)
T TIGR03799 264 IKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGA 307 (522)
T ss_pred CCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhH
Confidence 45677776544444565555 789999999999999999888765
No 307
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=8.1 Score=32.26 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=33.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++.-.+.+.-+...-|...| ++++.++||++|+++++|=.|+
T Consensus 161 ~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~ 202 (405)
T COG0520 161 PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA 202 (405)
T ss_pred CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc
Confidence 45666667766666676665 7899999999999999998886
No 308
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=78.31 E-value=5.2 Score=28.61 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=24.0
Q ss_pred ceEEEEEcccCCCC-C-cccCC--HHHHHHHHHHHHHhCCeEEE
Q psy1628 41 YPCAFFAESLQSCG-G-QIIPP--ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 41 ~iAAviiEPv~g~g-G-~~~~~--~~fl~~lr~lc~~~gillI~ 80 (114)
++..+|+||.+.-. + ....+ ..+++.++++|+++|+.+|+
T Consensus 141 ~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 141 GPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp --SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred CCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 58899999986532 2 11111 46999999999999987653
No 309
>PRK07049 methionine gamma-lyase; Validated
Probab=77.49 E-value=9.6 Score=31.76 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=31.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH---hCCeEEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA---AGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~---~gillI~DEV~tGf 87 (114)
.++.++++|. +++--....+.+-+.++.+.|++ +++++|+||...++
T Consensus 173 ~~tklv~les-P~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~ 222 (427)
T PRK07049 173 GRVSLILIET-PANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGP 222 (427)
T ss_pred CCceEEEEEC-CCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccc
Confidence 4678999994 44433345666666666666543 79999999986543
No 310
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=76.49 E-value=14 Score=29.34 Aligned_cols=43 Identities=12% Similarity=0.117 Sum_probs=27.3
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
..++.-| +.--|.... .+++.++++++++ +|+||+...|...+
T Consensus 151 ~~~l~nP-~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~ 193 (360)
T PRK07392 151 GLLLNNP-HNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPD 193 (360)
T ss_pred EEEEeCC-CCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCc
Confidence 3344445 333455554 3467788889985 66699999885544
No 311
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=76.28 E-value=2.4 Score=36.06 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 64 LREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
+++++++|+++|+++++|+.|. +|-.+
T Consensus 200 ~a~i~~ia~~~ga~LlvD~AH~-~Gli~ 226 (475)
T PLN03226 200 YARMRKIADKVGALLMCDMAHI-SGLVA 226 (475)
T ss_pred HHHHHHHHHHcCCEEEEEchhh-hCccc
Confidence 4489999999999999999887 44433
No 312
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=74.78 E-value=11 Score=31.25 Aligned_cols=89 Identities=15% Similarity=0.055 Sum_probs=57.1
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 5 VLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.+++--.=.|-+-.-.|.+-+|+.-++.. +.++-.++.=.-|+.|..+-. +++.++|+++|+.+++.=-.
T Consensus 126 eVp~tg~Pey~i~~e~y~~viee~~~~~g------~~~~lallTh~Dg~YGNl~Da----kkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 126 EVPNTGYPEYKITPEGYAEVIEEVKDEGG------DPPALALLTHVDGEYGNLADA----KKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred ecCCCCCCceEecHHHHHHHHHHHHhccC------CCceEEEEeccCCCcCCchhh----HHHHHHHHHcCCceEeecce
Confidence 34444445566666777888888777641 456666666666666654433 57889999999999998666
Q ss_pred ccccccCccchhhhhcCCCCCcCEEEe
Q psy1628 85 VGFGRVGTHWWAFQLQGDDIIPDIVTV 111 (114)
Q Consensus 85 tGfgRtG~~~~~~~~~g~~v~PDivt~ 111 (114)
| .||.-- + ... +.+|.++=
T Consensus 196 t-~Grmpv----s-~ke--~g~DFiVg 214 (382)
T COG1103 196 T-VGRMPV----S-GKE--IGADFIVG 214 (382)
T ss_pred e-eccccc----c-ccc--cCCCEEEe
Confidence 5 344321 1 122 77888764
No 313
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=74.09 E-value=9.5 Score=30.33 Aligned_cols=44 Identities=18% Similarity=0.113 Sum_probs=32.0
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
..++.-|- .-.|. ..+.+-++++.+.|++++.++|.||...-|.
T Consensus 133 ~v~l~nPn-NPTG~-~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~ 176 (339)
T PRK06959 133 HLIVVNPN-NPTAE-RLPAARLLRWHAQLAARGGTLIVDEAFADTL 176 (339)
T ss_pred EEEEeCCC-CCCCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccCC
Confidence 45666673 22354 4566668888888999999999999988773
No 314
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=71.34 E-value=12 Score=31.66 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=41.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
++..-|-+--..++-|.+.| ++++-++|+++|++|-.|=||+ +||.-- -.+.+ .-|+++++
T Consensus 140 ~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkipi---~~~~~----~vD~ls~S 200 (386)
T COG1104 140 PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIPI---DLEEL----GVDLLSFS 200 (386)
T ss_pred CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCceec---ccccc----CcceEEee
Confidence 35555555555666676666 5688899999999999999998 665432 12222 35777775
No 315
>PRK02769 histidine decarboxylase; Provisional
Probab=70.86 E-value=16 Score=30.05 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC---CeEEEccccccc
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG---GVCVADEVQVGF 87 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g---illI~DEV~tGf 87 (114)
.+++.+++.. .++..+++--....-|.+.| ++++.++|+++| +.+.+|=.|.|+
T Consensus 149 ~L~~~i~~~~------~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~ 205 (380)
T PRK02769 149 DLISKIKENK------NQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGM 205 (380)
T ss_pred HHHHHHHhCC------CCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccce
Confidence 3555555431 45666666666556666666 678899999998 699999999875
No 316
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=69.57 E-value=19 Score=30.26 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~ 92 (114)
.+|+.+.+ .++-++.+-|...+---...+.+=-++|.++|++|++.+|=|+.-.=|.-.+.
T Consensus 217 ~le~~~~~--------~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~ 277 (459)
T COG1167 217 ALEEALAQ--------WKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGP 277 (459)
T ss_pred HHHHHHhh--------cCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCC
Confidence 45555554 36889999997554323556667788999999999999999999887754443
No 317
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=68.94 E-value=13 Score=27.10 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=42.7
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc-cccCccchhhhhcCCCCCcCEEE
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF-GRVGTHWWAFQLQGDDIIPDIVT 110 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf-gRtG~~~~~~~~~g~~v~PDivt 110 (114)
+-+|+|.+.|. |...+.++.++.+-+++.+++..+|+=++-||+ .-||. .. ..- +++|.++
T Consensus 100 ~dlIIDal~G~-G~~~~l~~~~~~~i~~iN~~~~~viAiDiPSGl~~dtG~-~~---~~~--v~Ad~Tv 161 (169)
T PF03853_consen 100 ADLIIDALFGT-GFSGPLRGPIAELIDWINASRAPVIAIDIPSGLDADTGE-VD---GPA--VRADYTV 161 (169)
T ss_dssp ESEEEEES-ST-TGGSCGSTCHHHHHHHHHHHCSEEEEESS-TTCBTTTB--BS---SSS-----SEEE
T ss_pred ccEEEEecccC-CCCCCcCHHHHHHHHHHhccCCcEEEecCCCCccCCCCC-cC---CCE--EEcceee
Confidence 88999999997 455666667888888999999999999999999 45776 22 222 7888764
No 318
>PLN02880 tyrosine decarboxylase
Probab=67.43 E-value=17 Score=30.95 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 12 GRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 12 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
+++-...+.+++.+++..++. ..+.+++..-.....|.+.| +++|.++|++||+.+-+|=...|+
T Consensus 217 ~~~~md~~~L~~~i~~~~~~g-------~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~ 281 (490)
T PLN02880 217 TNYALAPELLSEAISTDLSSG-------LIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGS 281 (490)
T ss_pred cCCcCCHHHHHHHHHHHHHCC-------CccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHH
Confidence 344556666666666555432 46788888876665555544 578999999999999999666655
No 319
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=67.42 E-value=13 Score=31.39 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.++++.+++ +..-+|+-+.. ++-+.+| +++|++|++.|+++++|=-++
T Consensus 159 d~l~~~a~~~--------kPklIi~G~S~-----y~~~~d~-~~~reIad~vga~l~~D~sH~ 207 (399)
T PF00464_consen 159 DELEKLAKEH--------KPKLIICGASS-----YPRPIDF-KRFREIADEVGAYLMADISHI 207 (399)
T ss_dssp HHHHHHHHHH----------SEEEEE-SS-----TSS---H-HHHHHHHHHTT-EEEEE-TTT
T ss_pred HHHHHHHhhc--------CCCEEEECchh-----ccCccCH-HHHHHHHHhcCcEEEeccccc
Confidence 4566777775 33445554322 4555666 899999999999999997665
No 320
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=67.08 E-value=31 Score=24.75 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCC----C-CcccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 17 LLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSC----G-GQIIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 17 ~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~----g-G~~~~~~~fl~~lr~lc~~~gillI 79 (114)
.+..+.+.++++++.-. . .....+++.|..-. . .....-+.|-+.++++|+++|+.++
T Consensus 88 ~~~~~~~nl~~ii~~~~--~---~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEAR--A---KGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHH--H---CCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEE
Confidence 35566777777776432 1 24556777775421 1 1233457889999999999999884
No 321
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=65.81 E-value=18 Score=28.49 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=28.4
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++-.-+.-.|.. .+.+-++++.++| ++++|.||+...|.
T Consensus 153 ~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~~---~~~ii~De~y~~~~ 196 (356)
T PRK04870 153 RPALVFLAYPNNPTGNL-FDDADVERIIEAA---PGLVVVDEAYQPFA 196 (356)
T ss_pred CCCEEEEcCCCCCCCCC-CCHHHHHHHHHHC---CCEEEEECCchhhc
Confidence 45556554223334544 4566677777777 78999999998774
No 322
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=65.57 E-value=20 Score=33.59 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
+.+++.++++. ++++++++.--.. .|.+.++ ++++.++|+++|..+.+|=.+..
T Consensus 616 e~L~~~i~~~~------~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~ 669 (939)
T TIGR00461 616 VDLKNKAEQHG------DELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMN 669 (939)
T ss_pred HHHHHHHhhcC------CceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChh
Confidence 35666666542 6888888754332 3555544 78999999999999999988854
No 323
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=64.12 E-value=12 Score=29.14 Aligned_cols=75 Identities=13% Similarity=-0.012 Sum_probs=54.6
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628 3 VPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DE 82 (114)
+|-+++|++==.+.++.-....+-++..+ ..+.|+|+-...++ ++..+.+++.|.++|+-++++|
T Consensus 46 Lp~i~~~Dl~I~y~lHPDl~~~l~~~~~e--------~g~kavIvp~~~~~-------~g~~~~lk~~~e~~gi~~~~P~ 110 (217)
T PF02593_consen 46 LPKIPEADLLIAYGLHPDLTYELPEIAKE--------AGVKAVIVPSESPK-------PGLRRQLKKQLEEFGIEVEFPK 110 (217)
T ss_pred ccCCCCCCEEEEeccCchhHHHHHHHHHH--------cCCCEEEEecCCCc-------cchHHHHHHHHHhcCceeecCc
Confidence 34567777665555555555566666655 36677777655543 6788999999999999999999
Q ss_pred ccccccccCc
Q psy1628 83 VQVGFGRVGT 92 (114)
Q Consensus 83 V~tGfgRtG~ 92 (114)
.+|.+-.+|.
T Consensus 111 ~~CsL~~~~~ 120 (217)
T PF02593_consen 111 PFCSLEENGN 120 (217)
T ss_pred cccccCCCCC
Confidence 9999866554
No 324
>KOG1358|consensus
Probab=63.57 E-value=12 Score=32.23 Aligned_cols=60 Identities=28% Similarity=0.287 Sum_probs=44.0
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc---cccCccchhhhhcCCCCC---cCEEEe
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF---GRVGTHWWAFQLQGDDII---PDIVTV 111 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf---gRtG~~~~~~~~~g~~v~---PDivt~ 111 (114)
-=+++|-+-.+.|-+.|.+ ++.++..+|..-+|+||-.+ | |+||+ .-.+|++ +. -|+++.
T Consensus 235 rfiv~EGl~~N~g~i~pl~----~iv~lk~Kyk~RvildEs~S-fG~lg~~Gr--GvteH~~--v~~~~iDiv~~ 300 (467)
T KOG1358|consen 235 RFIVVEGLYANTGDICPLP----EIVKLKNKYKFRVILDESLS-FGVLGKTGR--GVTEHFG--VPITDIDIVTA 300 (467)
T ss_pred EEEEEEeeccCCCcccccH----HHHHHHhhheEEEEEecccc-cccccccCc--cccccCC--CCccceeeeee
Confidence 3467787766666666644 67789999999999999887 5 57775 5677888 54 366654
No 325
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=63.55 E-value=16 Score=29.16 Aligned_cols=46 Identities=20% Similarity=0.068 Sum_probs=31.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++-+-+.--|... +.+-++.+.++| +++++|.||+..-|.
T Consensus 167 ~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~De~Y~~~~ 212 (374)
T PRK02610 167 PPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVIDEAYFEFS 212 (374)
T ss_pred CCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEEeccccccC
Confidence 3677777655344356554 455577787776 499999999998773
No 326
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=62.23 E-value=9.2 Score=29.51 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhCCeEEEcc
Q psy1628 61 ANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DE 82 (114)
....++++++|++|++.||+++
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecC
Confidence 5667899999999999887753
No 327
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=62.22 E-value=10 Score=30.26 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=24.8
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 54 GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 54 gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.|. ..+.+-++++.++|++ ++++|.||+..-|-
T Consensus 172 tG~-~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~ 204 (371)
T PRK05166 172 VGS-WLTADQLARVLDATPP-ETLIVVDEAYAEYA 204 (371)
T ss_pred CCC-CCCHHHHHHHHHhCCC-CcEEEEECcHHHhc
Confidence 454 4566677787788865 89999999987764
No 328
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=61.55 E-value=29 Score=25.58 Aligned_cols=58 Identities=12% Similarity=-0.001 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCC--CcccCC---------HHHHHHHHHHHHHhCCeE-EEccccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCG--GQIIPP---------ANYLREVYKHVRAAGGVC-VADEVQVGF 87 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~g--G~~~~~---------~~fl~~lr~lc~~~gill-I~DEV~tGf 87 (114)
..+++.+.++ .++.-+++|++..-. ...... ..++..++.+++++++.+ +..++.+..
T Consensus 104 ~~l~~~l~~~-------~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~~ 173 (235)
T cd01123 104 EELEAILIES-------SRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARP 173 (235)
T ss_pred HHHHHHHhhc-------CCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeecC
Confidence 4455555553 388999999986421 001110 256778899999999954 455555433
No 329
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=59.63 E-value=20 Score=30.15 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=32.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEV 83 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV 83 (114)
++++|+.+---..--| .+..++-+.++.+++++||+.+|+|.-
T Consensus 178 e~~g~ic~SRPtNPTG-NVlTdeE~~kldalA~~~giPliIDnA 220 (417)
T COG3977 178 ESTGAICVSRPTNPTG-NVLTDEELAKLDALARQHGIPLIIDNA 220 (417)
T ss_pred cccceEEecCCCCCCC-CcccHHHHHHHHHHhhhcCCcEEEecc
Confidence 6787777653222122 567888899999999999999999964
No 330
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=59.56 E-value=29 Score=27.74 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=30.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++...+.-.|... +.+-++++.++|+ +++++|.||...-|.
T Consensus 151 ~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~ 197 (364)
T PRK04781 151 SNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFS 197 (364)
T ss_pred cCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhc
Confidence 3555666643233345544 5666667767775 479999999998774
No 331
>PRK12566 glycine dehydrogenase; Provisional
Probab=59.29 E-value=25 Score=33.02 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.+++.++++. .+++|+++.--.. .|.. .+-++++.++++++|+++.+|=.+.
T Consensus 629 e~L~a~I~~~~------~~laaVmiT~Pnt-~Gv~---e~~V~eI~~iah~~Galv~vDgA~~ 681 (954)
T PRK12566 629 DDLKAKAAAAG------DRLSCLMITYPST-HGVY---EEGIREICEVVHQHGGQVYMDGANL 681 (954)
T ss_pred HHHHHHhhccC------CCEEEEEEEecCc-Ccee---cchHHHHHHHHHHcCCEEEEEeeCh
Confidence 45566665542 6898888764333 3333 3457899999999999999998886
No 332
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=59.18 E-value=43 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=24.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
...+.+-++++.+.|++ ++++|+||+..-|.
T Consensus 160 ~~~~~~~l~~l~~~~~~-~~~vivDEay~~f~ 190 (351)
T PRK01688 160 NLINPQDLRTLLELTRG-KAIVVADEAYIEFC 190 (351)
T ss_pred CCCCHHHHHHHHHhCCC-CcEEEEECchhhcC
Confidence 45677788888888876 68999999988774
No 333
>PRK05409 hypothetical protein; Provisional
Probab=58.82 E-value=21 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=32.6
Q ss_pred EEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 45 FFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 45 viiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
+++..+ ++=||..+++++|++++++++++++..++-|-+-
T Consensus 58 v~~HGv~LslGs~~~ld~~~L~~l~~l~~~~~~~~vSeHL~ 98 (281)
T PRK05409 58 LSLHGVSLSLGGAAPLDKDHLKRLKALADRYQPPLVSEHLA 98 (281)
T ss_pred EEEcccccccCCCCCCCHHHHHHHHHHHHHHCCCEEEeeee
Confidence 344554 3446778999999999999999999999999764
No 334
>PRK09105 putative aminotransferase; Provisional
Probab=58.76 E-value=21 Score=28.78 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=28.0
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++..| ..-.|.. .+.+.++.+.+.|+ +++++|.||+...|.
T Consensus 169 v~l~nP-~NPTG~~-~~~~~l~~l~~~~~-~~~~lIvDEaY~~f~ 210 (370)
T PRK09105 169 IYICNP-NNPTGTV-TPRADIEWLLANKP-AGSVLLVDEAYIHFS 210 (370)
T ss_pred EEEeCC-CCCCCcC-cCHHHHHHHHHhCC-CCcEEEEECchHHhc
Confidence 344555 2224544 56666777777654 599999999997774
No 335
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=58.71 E-value=27 Score=29.55 Aligned_cols=53 Identities=6% Similarity=-0.142 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.++|+.+++. ++ +++.|++-.+- +..+--++=+.++.++|++|||.+|+.--.
T Consensus 142 ~~ie~~i~~~--G~---~~iLcvlttts----cfapr~~D~i~~IakiC~~~~IPhlvNnAY 194 (389)
T PF05889_consen 142 EAIEAKIEEL--GA---DNILCVLTTTS----CFAPRLPDDIEEIAKICKEYDIPHLVNNAY 194 (389)
T ss_dssp HHHHHHHHHH--CG---GGEEEEEEESS----TTTTB----HHHHHHHHHHHT--EEEEGTT
T ss_pred HHHHHHHHHh--CC---CCeEEEEEecC----ccCCCCCccHHHHHHHHHHcCCceEEccch
Confidence 5677777765 34 56777776542 234455667899999999999999987543
No 336
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=58.44 E-value=31 Score=26.51 Aligned_cols=62 Identities=15% Similarity=0.136 Sum_probs=44.8
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc-cccCccchhhhhcCCCCCcCEEE
Q psy1628 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF-GRVGTHWWAFQLQGDDIIPDIVT 110 (114)
Q Consensus 42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf-gRtG~~~~~~~~~g~~v~PDivt 110 (114)
-+.+|+|.+.|.|.-.++...|-..+..+. +.+...++=+|=||+ ..||. .. ..- +++|+++
T Consensus 119 ~~dvIVDalfG~G~~g~lrep~a~~Ie~iN-~~~~pivAVDiPSGl~~dtG~-~~---~~a--v~Ad~TV 181 (203)
T COG0062 119 SADVIVDALFGTGLSGPLREPFASLIEAIN-ASGKPIVAVDIPSGLDADTGE-VL---GAA--VKADLTV 181 (203)
T ss_pred cCCEEEEeceecCCCCCCccHHHHHHHHHH-hcCCceEEEeCCCCcCCCCCc-cc---Ccc--eeccEEE
Confidence 468999999998665556666555555554 999999999999999 46886 22 122 7888864
No 337
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=58.05 E-value=50 Score=24.45 Aligned_cols=41 Identities=15% Similarity=-0.008 Sum_probs=27.9
Q ss_pred CceEEEEEcccCCC-CCcccCC-----HHHHHHHHHHHHHhCCeEEE
Q psy1628 40 LYPCAFFAESLQSC-GGQIIPP-----ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 40 ~~iAAviiEPv~g~-gG~~~~~-----~~fl~~lr~lc~~~gillI~ 80 (114)
.++.-+++|+++.- .+..... ..+++.|+++++++|+.+|+
T Consensus 122 ~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 122 HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 36778999998642 1110111 25789999999999997765
No 338
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.71 E-value=19 Score=28.42 Aligned_cols=72 Identities=15% Similarity=-0.012 Sum_probs=50.3
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccc
Q psy1628 4 PVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEV 83 (114)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV 83 (114)
|-+++|++-=.+.++.=+.-.+-+..+. ..+.|+|+.... +.++.+.|++.|.++|+-+...+.
T Consensus 51 p~~~e~Di~va~~lHPDl~~~L~e~~~~--------~~~~alIvp~~~--------~~g~rkqL~~~~~~~g~e~~~p~p 114 (224)
T COG1810 51 PKLPEADIVVAYGLHPDLLLALPEKAAE--------GGVKALIVPAEP--------PEGLRKQLKEFCEELGVEFEAPEP 114 (224)
T ss_pred CCCCCCCEEEEeccCccHHHHHHHHHHh--------CCccEEEEecCC--------ChhHHHHHHHHhhhcceeeecCCc
Confidence 3446666655554444333344443322 578888887543 348999999999999999999999
Q ss_pred cccccccC
Q psy1628 84 QVGFGRVG 91 (114)
Q Consensus 84 ~tGfgRtG 91 (114)
+|-+--.+
T Consensus 115 ~C~Le~~~ 122 (224)
T COG1810 115 FCSLEPNE 122 (224)
T ss_pred cccCCCCC
Confidence 99886666
No 339
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=57.63 E-value=28 Score=27.98 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=29.1
Q ss_pred eEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 42 PCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 42 iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
..++++ .| +.--|. ..+.+-++++.++|++++ ++|+||+...|-
T Consensus 152 ~~~v~i~~P-~NPTG~-~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~ 196 (366)
T PRK01533 152 TKIVWICNP-NNPTGT-YVNDRKLTQFIEGISENT-LIVIDEAYYEYV 196 (366)
T ss_pred CcEEEEeCC-CCCCCC-CcCHHHHHHHHHhCCCCC-EEEEEccHHHhh
Confidence 334444 44 223454 446677888889998876 577799998774
No 340
>PLN02271 serine hydroxymethyltransferase
Probab=56.98 E-value=46 Score=29.69 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCeEEEccccc
Q psy1628 64 LREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~t 85 (114)
+++++++|+++|+++++|-.|+
T Consensus 315 ~~~i~eIAdevGA~LmvD~AH~ 336 (586)
T PLN02271 315 YARFRQIADKCGAVLMCDMAHI 336 (586)
T ss_pred HHHHHHHHHHcCCEEEEECccc
Confidence 5688999999999999999887
No 341
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=56.15 E-value=26 Score=29.64 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEcccCCC----CCcccCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 21 VHLFFERIFLSASLYPFLFLYPCAFFAESLQSC----GGQIIPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 21 ~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~----gG~~~~~~~fl~~lr~lc~~~gillI~ 80 (114)
.++-|+..+.+ -+..++|+||+-.- .=....-..|.+..|++|+.++..+|.
T Consensus 182 l~rRfek~~~Q--------~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy 237 (402)
T COG3598 182 LYRRFEKILEQ--------KRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIY 237 (402)
T ss_pred HHHHHHHHHHH--------hCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 34445555554 36679999997442 223445578999999999999987765
No 342
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=55.55 E-value=58 Score=25.03 Aligned_cols=38 Identities=11% Similarity=0.039 Sum_probs=29.3
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~ 80 (114)
+-+++=|...-.|....+..+++.++++++++++.+|+
T Consensus 40 a~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~ 77 (270)
T cd07571 40 PDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLT 77 (270)
T ss_pred CCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEE
Confidence 46777776655555556678999999999999998775
No 343
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.14 E-value=20 Score=29.98 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=27.1
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++-|+|.==..| .+. =++.++++|++||+.+|-|=-|+
T Consensus 122 ~tKAIipVhl~G----~~~---dm~~i~~la~~~~l~vIEDaAqa 159 (374)
T COG0399 122 RTKAIIPVHLAG----QPC---DMDAIMALAKRHGLPVIEDAAQA 159 (374)
T ss_pred CCeEEEEehhcc----CCC---CHHHHHHHHHHcCCeEEEEcchh
Confidence 466665433333 222 36789999999999999998876
No 344
>KOG1368|consensus
Probab=54.83 E-value=17 Score=30.44 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=35.6
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DE 82 (114)
-..-+-+|--+.+.|-...|-+|+.++.+||++||+-|=+|-
T Consensus 154 ~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DG 195 (384)
T KOG1368|consen 154 PTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDG 195 (384)
T ss_pred CceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecch
Confidence 446677888887767788899999999999999999998873
No 345
>KOG1549|consensus
Probab=54.57 E-value=22 Score=30.55 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=35.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.++.++.+.-+...-|+..| ++++.++||+.|+.+..|=-|.
T Consensus 180 ~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa 221 (428)
T KOG1549|consen 180 SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA 221 (428)
T ss_pred CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh
Confidence 58889999999888787776 4577779999999999998775
No 346
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=54.50 E-value=21 Score=30.17 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=38.9
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
++-++.+|+-.. - ...--=++++.++++++|+++|+|.... |+. .++-+. .-.||++-+
T Consensus 149 ~tk~v~lEtPsN-P---~l~v~DI~~i~~~A~~~g~~vvVDNTfa----tP~---~q~PL~--~GaDIVvhS 207 (396)
T COG0626 149 NTKLVFLETPSN-P---LLEVPDIPAIARLAKAYGALVVVDNTFA----TPV---LQRPLE--LGADIVVHS 207 (396)
T ss_pred CceEEEEeCCCC-c---ccccccHHHHHHHHHhcCCEEEEECCcc----ccc---ccChhh--cCCCEEEEe
Confidence 788888887543 1 1222236789999999999999999876 332 233333 336877654
No 347
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=53.08 E-value=16 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHhCC-eEEEccccc
Q psy1628 59 PPANYLREVYKHVRAAGG-VCVADEVQV 85 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gi-llI~DEV~t 85 (114)
...+.++.+.+..++++. ++|+||.+-
T Consensus 71 ~~~~l~~~~~~~l~~~~~~~lviDe~~~ 98 (131)
T PF13401_consen 71 TSDELRSLLIDALDRRRVVLLVIDEADH 98 (131)
T ss_dssp -HHHHHHHHHHHHHHCTEEEEEEETTHH
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEeChHh
Confidence 346777888888888888 999999997
No 348
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=50.96 E-value=17 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHHhCCeEEE
Q psy1628 59 PPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI~ 80 (114)
-+.+|++.+++.++++|++=|.
T Consensus 14 Dp~~yi~~i~~~~~~yGi~KIv 35 (42)
T smart00545 14 DPLAYISKIRPQAEKYGICKVV 35 (42)
T ss_pred CHHHHHHHHHHHHhhCCEEEEE
Confidence 4578999999999999998664
No 349
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.44 E-value=25 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred CcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 55 GQIIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 55 G~~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
+..+..++|.+.||+.|+++|+.|.+=
T Consensus 201 ~ARp~~~~Wvr~irdqC~~~gvpFffK 227 (261)
T PF07505_consen 201 GARPMHPDWVRSIRDQCAAAGVPFFFK 227 (261)
T ss_pred CCCcCCHHHHHHHHHHHHHcCCcEEEE
Confidence 356778999999999999999999885
No 350
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=48.42 E-value=52 Score=24.75 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=44.4
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc-cccCccchhhhhcCCCCCcCEEE
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF-GRVGTHWWAFQLQGDDIIPDIVT 110 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf-gRtG~~~~~~~~~g~~v~PDivt 110 (114)
+-+|+|.+.|.| ...+..+.++.+.+...+.+...|+=+|=||+ .-||. ..+ .. +++|.++
T Consensus 115 ~dliIDalfGtG-l~~~l~~~~~~~i~~iN~~~~~vlAiDiPSGl~~dtG~-~~~---~a--v~Ad~Tv 176 (205)
T TIGR00197 115 CDVIIDAILGTG-FKGKLREPFKTIVESINELPAPIVSVDIPSGLDVDTGA-IEG---PA--VNADLTI 176 (205)
T ss_pred CCEEEEeeecCC-CCCccchHHHHHHHHHHhCCCCeEEEecCCcccCCCCC-CCC---cc--eeCCEEE
Confidence 469999999874 45556677777888888889989999999999 34665 211 12 7777754
No 351
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=47.34 E-value=12 Score=28.68 Aligned_cols=29 Identities=14% Similarity=0.069 Sum_probs=15.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
+.++.+-.+.+.++.+++++.+|+|=|+.
T Consensus 68 ~l~~~~~v~~i~~~l~~~~~~vV~DPVm~ 96 (246)
T PF08543_consen 68 YLGSAEQVEIIADFLKKPKIPVVLDPVMG 96 (246)
T ss_dssp S-SSHHHHHHHHHHHHHTTTEEEEE---E
T ss_pred ccCCchhhhhHHHHHhccCCCEEEecccc
Confidence 34555666666666666666666666664
No 352
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=46.02 E-value=32 Score=28.94 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhCCeEEEc
Q psy1628 63 YLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 63 fl~~lr~lc~~~gillI~D 81 (114)
=++.+.+++++|++++|.|
T Consensus 158 ~~~el~~la~~~~lp~i~D 176 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVD 176 (367)
T ss_dssp ---HHHHHHHHHT--EEEE
T ss_pred cHHHHHHHHhhcCCcEEEE
Confidence 3678899999999999999
No 353
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=45.64 E-value=12 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
.++.+++.+.-...+.++|++|-..|-||.|+ -|.+.
T Consensus 19 N~~ak~~~~~~~~~~~vviA~~QT~GRGR~gR-~W~Sp 55 (245)
T PTZ00276 19 MDVARTMLAAAGGKPFAVLAESQTAGRGTGGR-TWTSP 55 (245)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCCCCCCC-cccCC
Confidence 34555442221246689999999999999998 55444
No 354
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=45.13 E-value=88 Score=25.67 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 59 PPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI~D 81 (114)
.+++|+.++-++|+++|+-+|+|
T Consensus 143 ~~~d~y~~li~~~~~~g~~vilD 165 (310)
T COG1105 143 VPPDAYAELIRILRQQGAKVILD 165 (310)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEE
Confidence 56899999999999999999999
No 355
>KOG4476|consensus
Probab=44.94 E-value=13 Score=29.74 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=15.4
Q ss_pred HhCCeEEEccccccccc
Q psy1628 73 AAGGVCVADEVQVGFGR 89 (114)
Q Consensus 73 ~~gillI~DEV~tGfgR 89 (114)
+.|-+|++||.++|..|
T Consensus 45 rsGsIFVf~Ee~sGiKR 61 (248)
T KOG4476|consen 45 RSGSIFVFDEEESGIKR 61 (248)
T ss_pred ecCCEEEEeecccccee
Confidence 57999999999999976
No 356
>COG5037 TOS9 Gluconate transport-inducing protein [Signal transduction mechanisms / Carbohydrate transport and metabolism]
Probab=44.94 E-value=13 Score=29.74 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=15.4
Q ss_pred HhCCeEEEccccccccc
Q psy1628 73 AAGGVCVADEVQVGFGR 89 (114)
Q Consensus 73 ~~gillI~DEV~tGfgR 89 (114)
+.|-+|++||.++|..|
T Consensus 45 rsGsIFVf~Ee~sGiKR 61 (248)
T COG5037 45 RSGSIFVFDEEESGIKR 61 (248)
T ss_pred ecCCEEEEeecccccee
Confidence 57999999999999976
No 357
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=44.83 E-value=30 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhCCeEE
Q psy1628 61 ANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI 79 (114)
.++++.+.+.|+++|+.+|
T Consensus 74 ~~~~~Gi~~~~~~~g~~iv 92 (96)
T PF00586_consen 74 KEIVKGIAEACREFGIPIV 92 (96)
T ss_dssp HHHHHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHHHHHhCCcEe
Confidence 5778888999999999886
No 358
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=44.75 E-value=29 Score=29.44 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCCCCCceE---EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 22 HLFFERIFLSASLYPFLFLYPC---AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 22 ~~~~e~~~~~~~~~~~~~~~iA---AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
...+++.++++. +.-+ ++|.-|- -.|+.. =++.+.++|+++++.+++||-.-+.
T Consensus 153 ~~~i~~~l~~~p------~~k~~~~vvlt~PT--Y~Gv~~----di~~I~~~~h~~~~~llvDEAhGah 209 (417)
T PF01276_consen 153 EEDIEEALKEHP------DAKAPRLVVLTSPT--YYGVCY----DIKEIAEICHKHGIPLLVDEAHGAH 209 (417)
T ss_dssp HHHHHHHHHHCT------TCHCESEEEEESS---TTSEEE-----HHHHHHHHCCTECEEEEE-TT-TT
T ss_pred HHHHHHHHHhCc------cccCceEEEEeCCC--CCeEEE----CHHHHHHHhcccCCEEEEEcccccc
Confidence 367788888863 2223 5666663 123222 2678889999999999999987654
No 359
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=44.28 E-value=85 Score=23.32 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHhCCeEEEc
Q psy1628 60 PANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~gillI~D 81 (114)
+..+++.++++++++++.+|+=
T Consensus 60 ~~~~~~~l~~~a~~~~~~ii~G 81 (254)
T cd07576 60 DGPALQALRAIARRHGIAIVVG 81 (254)
T ss_pred CChHHHHHHHHHHHcCCEEEEe
Confidence 4578999999999999988763
No 360
>PRK07908 hypothetical protein; Provisional
Probab=44.14 E-value=37 Score=26.70 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=25.5
Q ss_pred ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
++.++++ |-+.+ -|...+.. .+.++|+ ++.++|.||++.-|
T Consensus 139 ~~~~i~l-~np~NPTG~~~~~~----~l~~l~~-~~~~iIvDe~y~~~ 180 (349)
T PRK07908 139 DADLVVI-GNPTNPTSVLHPAE----QLLALRR-PGRILVVDEAFADA 180 (349)
T ss_pred CCCEEEE-cCCCCCCCCCcCHH----HHHHHHh-cCCEEEEECcchhh
Confidence 4445555 43333 46555433 5667776 47888899998765
No 361
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=43.69 E-value=25 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
.+=++++.+.|+++|+-+|+|=|..=.+...
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~ 81 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVPNHTSDDH 81 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETSEEETTS
T ss_pred hhhhhhhhhccccccceEEEeeecccccccc
Confidence 4558888899999999999999986334444
No 362
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=43.64 E-value=31 Score=26.43 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCeEEEcc
Q psy1628 62 NYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DE 82 (114)
...++++++|+++|+.||++.
T Consensus 58 ~~a~~l~~l~~~~gv~liINd 78 (221)
T PRK06512 58 KQAEKLVPVIQEAGAAALIAG 78 (221)
T ss_pred HHHHHHHHHHHHhCCEEEEeC
Confidence 346778899999999998863
No 363
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=43.38 E-value=96 Score=24.96 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=26.3
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
.++.++++..-..--|... +.+-+++ +++.. +++|.||+...|.
T Consensus 174 ~~~~~v~l~~P~NPTG~~~-~~~~l~~---l~~~~-~~vi~DeaY~~~~ 217 (380)
T PLN03026 174 HKPKLLFLTSPNNPDGSII-SDDDLLK---ILELP-ILVVLDEAYIEFS 217 (380)
T ss_pred cCCcEEEEeCCCCCCCCCC-CHHHHHH---HHhcC-CEEEEECcchhhc
Confidence 3556666654343346544 4444444 44433 8999999998774
No 364
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=42.89 E-value=96 Score=23.49 Aligned_cols=52 Identities=21% Similarity=0.195 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC-eEEEccccc
Q psy1628 18 LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGG-VCVADEVQV 85 (114)
Q Consensus 18 ~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gi-llI~DEV~t 85 (114)
-....+.++.++++. ++.++-+ | +..+.+.++.+.+.+++++. .+++|=|..
T Consensus 52 ~~~~~~q~~~~~~d~--------~~~aiki-------G-~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~ 104 (254)
T TIGR00097 52 PDFVEAQLDAVFSDI--------PVDAAKT-------G-MLASAEIVEAVARKLREYPVRPLVVDPVMV 104 (254)
T ss_pred HHHHHHHHHHHHhCC--------CCCEEEE-------C-CcCCHHHHHHHHHHHHhcCCCcEEECCccc
Confidence 456677777777753 4455543 3 34677899999999999999 699998854
No 365
>KOG0352|consensus
Probab=42.52 E-value=49 Score=29.22 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=41.0
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC-eEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGG-VCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gi-llI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
.++--+.+.|.+. ++..|..-|..|..++-. -+++||-.| .. -|++ ++.||.+.+|
T Consensus 112 p~~K~LYITPE~A------At~~FQ~lLn~L~~r~~L~Y~vVDEAHC----VS--QWGH-----DFRPDYL~LG 168 (641)
T KOG0352|consen 112 PTIKMLYITPEGA------ATDGFQKLLNGLANRDVLRYIVVDEAHC----VS--QWGH-----DFRPDYLTLG 168 (641)
T ss_pred CceeEEEEchhhh------hhhhHHHHHHHHhhhceeeeEEechhhh----Hh--hhcc-----ccCcchhhhh
Confidence 4778888999875 566788888888776655 578999887 22 2444 2889998876
No 366
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=42.44 E-value=81 Score=23.67 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=28.1
Q ss_pred CceEEEEEcccCCCCCcccC----CHHHHHHHHHHHHHhCCe-EEEccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIP----PANYLREVYKHVRAAGGV-CVADEV 83 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~----~~~fl~~lr~lc~~~gil-lI~DEV 83 (114)
.++..+|+||...-.+.... -..+++.++++++++|+. +++-..
T Consensus 110 ~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~ 158 (239)
T cd01125 110 RRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHV 158 (239)
T ss_pred cCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 46789999998642111111 235788899999998864 444443
No 367
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=42.17 E-value=97 Score=22.69 Aligned_cols=40 Identities=8% Similarity=-0.102 Sum_probs=27.8
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
..+.++-+.|..+ +..+.++.+...+-++|.++|+.+.+-
T Consensus 97 ~g~~Gv~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~pv~~H 136 (273)
T PF04909_consen 97 LGFRGVKLHPDLG--GFDPDDPRLDDPIFEAAEELGLPVLIH 136 (273)
T ss_dssp TTESEEEEESSET--TCCTTSGHCHHHHHHHHHHHT-EEEEE
T ss_pred cceeeeEecCCCC--ccccccHHHHHHHHHHHHhhccceeee
Confidence 4566777777432 345566666679999999999988855
No 368
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=41.71 E-value=40 Score=27.01 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=23.1
Q ss_pred EEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccc
Q psy1628 45 FFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEV 83 (114)
Q Consensus 45 viiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV 83 (114)
+++..+ .+-||..+++.+|++++++++++++..++-|-+
T Consensus 56 v~~HGv~lslG~~~~~d~~~L~~l~~l~~~~~~~~vSeHL 95 (274)
T PF05114_consen 56 VSLHGVGLSLGSADPLDKDYLRRLKALADRLNPPWVSEHL 95 (274)
T ss_dssp EEEB-S---TT-SS---HHHHHHHHHHHHHTT----EE-S
T ss_pred EEEeccccccCCCCCCCHHHHHHHHHHHHHHCCCEEEeEE
Confidence 555555 344778899999999999999999999999975
No 369
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=41.60 E-value=49 Score=26.09 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCCeEEEcccccccc
Q psy1628 65 REVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 65 ~~lr~lc~~~gillI~DEV~tGfg 88 (114)
+++.+++ ++++++|.||+...|.
T Consensus 160 ~~l~~i~-~~~~~ii~De~y~~~~ 182 (337)
T PRK03967 160 EEILKVL-ETGKPVVLDEAYAEFS 182 (337)
T ss_pred HHHHHHH-hcCCEEEEECchhhhc
Confidence 4566667 4799999999998884
No 370
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=40.70 E-value=81 Score=26.53 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=31.6
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh------CCeEEEccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA------GGVCVADEVQVGF 87 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGf 87 (114)
++..|.+--...+-|.+.| ++++.++|+++ |+.+-+|=+|.|+
T Consensus 186 ~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~ 234 (431)
T TIGR01788 186 NTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGF 234 (431)
T ss_pred CCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHH
Confidence 3445555555555565555 46888999999 9999999999985
No 371
>PLN03032 serine decarboxylase; Provisional
Probab=40.57 E-value=88 Score=25.88 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC-----eEEEccccccc
Q psy1628 24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGG-----VCVADEVQVGF 87 (114)
Q Consensus 24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gi-----llI~DEV~tGf 87 (114)
.+++.+.+.. +++..+++--....-|.+.| ++++.++|+++|+ .+-+|=.+.|+
T Consensus 150 ~L~~~i~~~~------~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~ 208 (374)
T PLN03032 150 DLERALAKNR------DKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGL 208 (374)
T ss_pred HHHHHHHHcC------CCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhh
Confidence 4455555431 35556666544444555533 5689999999975 79999888765
No 372
>PRK06434 cystathionine gamma-lyase; Validated
Probab=40.07 E-value=41 Score=27.84 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=32.8
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV 112 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g 112 (114)
++..+++|-.....+. . -=++++.++|++++ +++|-.+. ++ +..+..+ .-.|++++|
T Consensus 148 ~tklv~~e~~snpt~~-v---~Di~~I~~la~~~~--lvVD~t~~----s~---~~~~pl~--~gaDivv~S 204 (384)
T PRK06434 148 NYDLIYAESITNPTLK-V---PDIKNVSSFCHEND--VIVDATFA----SP---YNQNPLD--LGADVVIHS 204 (384)
T ss_pred CeeEEEEEcCCCCCce-e---ecHHHHHHHHHHcC--eEEECCCC----Cc---ccCCchh--cCCCEEEee
Confidence 4566666654322221 2 23889999999998 45698863 11 1122223 446888775
No 373
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=39.74 E-value=71 Score=27.31 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=25.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~ 80 (114)
+++||++++- +..-|.+.. ++++.++++++|.++|+
T Consensus 196 ~~~a~v~vq~-Pn~~G~~ed----~~~i~~~~h~~gal~~~ 231 (429)
T PF02347_consen 196 DDTAAVMVQN-PNTFGVFED----IKEIADIAHAAGALVIV 231 (429)
T ss_dssp TTEEEEEEES-S-TTSB--T----HHHHHHHHHHTT-EEEE
T ss_pred cCeEEEEeec-CCCCceEee----HHHHHHHHHHcCCEEEE
Confidence 6889998874 333343332 88999999999999986
No 374
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=39.23 E-value=1.2e+02 Score=22.30 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh-CCeEEEccccc
Q psy1628 21 VHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA-GGVCVADEVQV 85 (114)
Q Consensus 21 ~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~t 85 (114)
..+.++.++++ .++.++.+ | +..+++..+.+.++.+++ +..+++|=+..
T Consensus 56 ~~~~l~~~~~~--------~~~~~i~~-------G-~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~ 105 (242)
T cd01169 56 VAAQLDAVLED--------IPVDAIKI-------G-MLGSAEIIEAVAEALKDYPDIPVVLDPVMV 105 (242)
T ss_pred HHHHHHHHHhC--------CCCCEEEE-------C-CCCCHHHHHHHHHHHHhCCCCcEEECCcee
Confidence 44555555543 35666666 3 345789999999999998 89999997763
No 375
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=38.63 E-value=1.3e+02 Score=20.59 Aligned_cols=36 Identities=6% Similarity=-0.161 Sum_probs=26.6
Q ss_pred CceEEEEEcccC-CCCCccc-CCHHHHHHHHHHHHHhCCeEEE
Q psy1628 40 LYPCAFFAESLQ-SCGGQII-PPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 40 ~~iAAviiEPv~-g~gG~~~-~~~~fl~~lr~lc~~~gillI~ 80 (114)
+++..+|.-|-+ +. .+ -+. -..+|+.|.++++.++-
T Consensus 69 g~i~~VInt~~~~~~---~~~~~d--g~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 69 GEIDAVIFFRDPLTA---QPHEPD--VKALLRLCDVYNIPLAT 106 (115)
T ss_pred CceeEEEEcCCCCCC---Cccccc--HHHHHHHHHHcCCCEEE
Confidence 689999999876 43 12 223 34899999999998763
No 376
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=37.34 E-value=31 Score=24.42 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=34.9
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCE
Q psy1628 52 SCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDI 108 (114)
Q Consensus 52 g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDi 108 (114)
+++|. -+.+-+....+++++|++.+ ||+..|==+.|...|..+... ++||.
T Consensus 56 ~n~~~--i~~~~~~~t~~wL~k~~ipY--d~l~~~kp~~~~~~~~~dD~~--ir~~~ 106 (126)
T TIGR01689 56 GNVGK--INIHTLPIIILWLNQHNVPY--DEIYVGKPWCGHDGFYVDDRA--IRPSE 106 (126)
T ss_pred ccccc--cchhhHHHHHHHHHHcCCCC--ceEEeCCCcCCCCCceecchh--hCHHH
Confidence 45565 46677889999999999998 999986544443123344444 77764
No 377
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=37.29 E-value=15 Score=20.57 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHhCCeEEE
Q psy1628 59 PPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI~ 80 (114)
-+..|++.++..+.++|+.=|+
T Consensus 12 dp~~yi~~i~~~g~~~Gi~KIv 33 (34)
T PF02375_consen 12 DPIKYISSIEPEGEKYGICKIV 33 (34)
T ss_dssp -HHHHHHHHHHTTGGGSEEEE-
T ss_pred CHHHHHHHHHHHHHHCCEEEec
Confidence 3468999999999999987653
No 378
>PRK05367 glycine dehydrogenase; Provisional
Probab=37.19 E-value=65 Score=30.19 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=30.6
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
++++++++ ..++..|.+.+ ++++.++|+++|+++++|=-+
T Consensus 205 ~~~~~vlv-q~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~ 244 (954)
T PRK05367 205 DDVFGVLL-QYPGTSGEVRD----YTALIAAAHARGALVAVAADL 244 (954)
T ss_pred ccEEEEEE-ecCCCCeeecc----HHHHHHHHHHcCCEEEEEehh
Confidence 46766644 45677777763 789999999999999999744
No 379
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=37.18 E-value=1.5e+02 Score=21.52 Aligned_cols=45 Identities=11% Similarity=-0.005 Sum_probs=28.9
Q ss_pred CceEEEEEcccCCCCCcccC-----------CHHHHHHHHHHHHHhCCeEEE-cccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIP-----------PANYLREVYKHVRAAGGVCVA-DEVQ 84 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~-----------~~~fl~~lr~lc~~~gillI~-DEV~ 84 (114)
.++..+++|++..--..... -..++..|+.+|+++++.+|+ .++.
T Consensus 113 ~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~ 169 (226)
T cd01393 113 GRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVR 169 (226)
T ss_pred CCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEe
Confidence 57889999998652110001 124567789999999996654 4443
No 380
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=37.01 E-value=1.4e+02 Score=24.22 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC--eEEEcccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGG--VCVADEVQ 84 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gi--llI~DEV~ 84 (114)
+.+.+++.+. .++-|++|| ..-+.+-+..|.+.+.++++ -+++||-.
T Consensus 137 E~vR~~I~~A-------~kVIAIVMD--------~FTD~dIf~DLleAa~kR~VpVYiLLD~~~ 185 (284)
T PF07894_consen 137 EVVRRMIQQA-------QKVIAIVMD--------VFTDVDIFCDLLEAANKRGVPVYILLDEQN 185 (284)
T ss_pred HHHHHHHHHh-------cceeEEEee--------ccccHHHHHHHHHHHHhcCCcEEEEechhc
Confidence 4455666654 799999999 45678999999999988887 46888754
No 381
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=36.83 E-value=54 Score=25.59 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=24.0
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 45 FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 45 viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.-| +.-.|.. .+.+-++++.++++ ++.+|.||+...|+
T Consensus 149 ~~~~P-~NPtG~~-~~~~~~~~l~~~~~--~~~livDe~y~~~~ 188 (353)
T PRK05387 149 IFPNP-NAPTGIA-LPLAEIERILAANP--DSVVVIDEAYVDFG 188 (353)
T ss_pred EEeCC-CCCCCCC-CCHHHHHHHHHhCC--CcEEEEeCcccccC
Confidence 44455 2223544 44455555554432 99999999987774
No 382
>KOG3242|consensus
Probab=36.59 E-value=67 Score=24.88 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=28.0
Q ss_pred ceEEEEEcccCC--CC---CcccCCHHHHHHHHHHHHHhC
Q psy1628 41 YPCAFFAESLQS--CG---GQIIPPANYLREVYKHVRAAG 75 (114)
Q Consensus 41 ~iAAviiEPv~g--~g---G~~~~~~~fl~~lr~lc~~~g 75 (114)
+|||+|.+.-.. +. -++..|++.+..+.+||.+|.
T Consensus 47 EiacIITD~dL~~~~egpd~vI~~~~evld~MneWc~ehh 86 (208)
T KOG3242|consen 47 EIACIITDGDLNPVAEGPDLVIHQPKEVLDKMNEWCIEHH 86 (208)
T ss_pred EEEEEEecCCccccccCccchhcCCHHHHHHHHHHHHHhc
Confidence 679999987533 22 377889999999999999874
No 383
>smart00642 Aamy Alpha-amylase domain.
Probab=36.19 E-value=48 Score=24.12 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
.+=++++.+.|+++|+-+|+|=|..-
T Consensus 69 ~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 69 MEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 35588889999999999999988764
No 384
>PRK05380 pyrG CTP synthetase; Validated
Probab=36.04 E-value=46 Score=29.33 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC---CeEE---------
Q psy1628 12 GRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG---GVCV--------- 79 (114)
Q Consensus 12 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g---illI--------- 79 (114)
|+|.=...-+.+.+++.+.+-+ .+.--+|+|-.-.-| -.-+.-|++++|++-.+.| +++|
T Consensus 109 G~tvQviPHit~eI~~~i~~~~------~~~dv~i~EiGGTvG--DiEs~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~ 180 (533)
T PRK05380 109 GKTVQVIPHITDEIKERILAAG------TDADVVIVEIGGTVG--DIESLPFLEAIRQLRLELGRENVLFIHLTLVPYIA 180 (533)
T ss_pred CceEEEccCccHHHHHHHHhcC------CCCCEEEEEeCCccc--cccccHHHHHHHHHHHhhCCCcEEEEEEeccceec
Confidence 3333333334445555555432 233445666432222 2455669999999999876 4443
Q ss_pred -EccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628 80 -ADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 111 (114)
Q Consensus 80 -~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~ 111 (114)
..|..|=--+.. .-.....| +.||++++
T Consensus 181 ~~~E~KtKPtQhs--v~~lr~~G--i~pd~i~~ 209 (533)
T PRK05380 181 AAGELKTKPTQHS--VKELRSIG--IQPDILVC 209 (533)
T ss_pred CCCcccCCchHHH--HHHHHhCC--CCCCEEEE
Confidence 356655221111 11122356 99999975
No 385
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=35.29 E-value=27 Score=28.24 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=25.6
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
++..+.+--.-...|+..|- .++++++|+++|+|=+|+
T Consensus 128 ~~~lV~~~h~et~tG~~~pi-------~~I~~~~g~~~iVDavqs 165 (361)
T TIGR01366 128 GVDVIAWAHNETSTGVAVPV-------RRPEGSDDALVVIDATSG 165 (361)
T ss_pred CCCEEEEcccCCccceeccc-------ccccccCCCeEEEEcCcc
Confidence 45555555544455655553 334689999999999987
No 386
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=35.09 E-value=1e+02 Score=23.46 Aligned_cols=67 Identities=18% Similarity=0.100 Sum_probs=40.9
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEc-cccccccccCccchhhh-hcCCCCCcCEEEee
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVAD-EVQVGFGRVGTHWWAFQ-LQGDDIIPDIVTVV 112 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~D-EV~tGfgRtG~~~~~~~-~~g~~v~PDivt~g 112 (114)
.+..+.+..|..| ..-|..+...+.+.++++|+-+..+ || +++-+.+.++...+ ..| .++.|.++++
T Consensus 120 ~~~~~g~~~~~~g----~v~p~~l~~~l~~~~~~~g~~~~~~~~v-~~i~~~~~~~~~v~~~~g-~~~a~~vV~a 188 (337)
T TIGR02352 120 GGIRGAVFYPDDA----HVDPRALLKALEKALEKLGVEIIEHTEV-QHIEIRGEKVTAIVTPSG-DVQADQVVLA 188 (337)
T ss_pred cccceEEEcCCCc----eEChHHHHHHHHHHHHHcCCEEEccceE-EEEEeeCCEEEEEEcCCC-EEECCEEEEc
Confidence 3444555555433 4568899999999999999988887 44 44544333122222 122 2567777653
No 387
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=35.08 E-value=48 Score=26.21 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=27.4
Q ss_pred ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628 41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG 88 (114)
Q Consensus 41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg 88 (114)
++.++++.--+.-.|... +.+.++++.+.|+ ++++|.||+..-|.
T Consensus 147 ~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~ 191 (354)
T PRK04635 147 GAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFC 191 (354)
T ss_pred CCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhc
Confidence 444555542233345444 5566666666665 49999999987774
No 388
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=35.01 E-value=1.2e+02 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCeEEE
Q psy1628 61 ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~ 80 (114)
..+++.++++++++++.+++
T Consensus 60 ~~~~~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 60 GPFVSALARLARELGITVVA 79 (255)
T ss_pred CHHHHHHHHHHHHcCeEEEE
Confidence 36899999999999998885
No 389
>PRK12412 pyridoxal kinase; Reviewed
Probab=34.75 E-value=1.5e+02 Score=22.69 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCe-EEEccccc
Q psy1628 18 LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGV-CVADEVQV 85 (114)
Q Consensus 18 ~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gil-lI~DEV~t 85 (114)
.....+.++.++++. ++.++.+ | +..+.+..+.+.+++++++.. +|+|=|+.
T Consensus 57 ~~~i~~q~~~l~~d~--------~~~~iki-------G-~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~ 109 (268)
T PRK12412 57 ASTLKPQLETTIEGV--------GVDALKT-------G-MLGSVEIIEMVAETIEKHNFKNVVVDPVMV 109 (268)
T ss_pred HHHHHHHHHHHHhCC--------CCCEEEE-------C-CCCCHHHHHHHHHHHHhcCCCCEEECcCee
Confidence 455666777777652 4455553 2 356778888999999999886 89998864
No 390
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.75 E-value=1.4e+02 Score=21.05 Aligned_cols=56 Identities=4% Similarity=-0.155 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCc----ccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 18 LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQ----IIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 18 ~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~----~~~~~~fl~~lr~lc~~~gillI 79 (114)
...+...+++++..-. .....+++.|.+-.... ...-..|-+.++++|+++++.+|
T Consensus 94 ~~~~~~~~~~ii~~~~------~~~~vi~~~~~p~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~v 153 (193)
T cd01835 94 ARAFLFGLNQLLEEAK------RLVPVLVVGPTPVDEAKMPYSNRRIARLETAFAEVCLRRDVPFL 153 (193)
T ss_pred HHHHHHHHHHHHHHHh------cCCcEEEEeCCCccccccchhhHHHHHHHHHHHHHHHHcCCCeE
Confidence 4556666777766532 23334555553322111 11234577888999999998776
No 391
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=34.22 E-value=56 Score=25.45 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=26.0
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
...-.++++.++++++..++.+|+| .-||||.
T Consensus 51 ~lt~~e~~~~~~~I~~~~~iPv~vD-~d~GyG~ 82 (238)
T PF13714_consen 51 LLTLTEMLAAVRRIARAVSIPVIVD-ADTGYGN 82 (238)
T ss_dssp -S-HHHHHHHHHHHHHHSSSEEEEE--TTTSSS
T ss_pred CCCHHHHHHHHHHHHhhhcCcEEEE-cccccCc
Confidence 4555789999999999999999999 7888876
No 392
>PRK15029 arginine decarboxylase; Provisional
Probab=33.87 E-value=37 Score=31.01 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 64 LREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
++.+.++|+++|+.+++||-.-+.-+-.
T Consensus 330 i~~I~~~~h~~~~~llvDEAhGah~~F~ 357 (755)
T PRK15029 330 AKEAQDLLEKTSDRLHFDEAWYGYARFN 357 (755)
T ss_pred HHHHHHHHHhcCCeEEEECccccccccC
Confidence 4788899999999999999886654333
No 393
>PRK08999 hypothetical protein; Provisional
Probab=33.22 E-value=55 Score=25.59 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhCCeEEEc
Q psy1628 61 ANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~D 81 (114)
....+.++++|+++|+.+|++
T Consensus 174 ~~~~~~l~~~~~~~~~~liin 194 (312)
T PRK08999 174 RALARAALGLCRRAGAQLLLN 194 (312)
T ss_pred HHHHHHHHHHHHHhCCEEEEE
Confidence 356778889999999999886
No 394
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=32.81 E-value=1.5e+02 Score=22.29 Aligned_cols=40 Identities=5% Similarity=-0.139 Sum_probs=25.4
Q ss_pred CceEEEEEcccCCCCCcc---cC----CHHHHHHHHHHHHHhCCeEE
Q psy1628 40 LYPCAFFAESLQSCGGQI---IP----PANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~---~~----~~~fl~~lr~lc~~~gillI 79 (114)
.++--+|+|+++.-.... .. -..++..|+++++++++.++
T Consensus 139 ~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvl 185 (271)
T cd01122 139 HGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHIT 185 (271)
T ss_pred CCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 356789999975521100 11 12566779999999998444
No 395
>KOG0634|consensus
Probab=32.76 E-value=47 Score=28.83 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=25.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
.-.+.+=-+++.+|+|+|++|+|-||+.-
T Consensus 219 ~tls~errk~iy~LArKyDfLIVeDdpYy 247 (472)
T KOG0634|consen 219 NTLSLERRKKIYQLARKYDFLIVEDDPYY 247 (472)
T ss_pred CccCHHHHHHHHHHHHHcCEEEEecCccc
Confidence 45677888999999999999999999864
No 396
>PRK10565 putative carbohydrate kinase; Provisional
Probab=32.54 E-value=1.1e+02 Score=26.42 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=44.0
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc-cccCccchhhhhcCCCCCcCEEE
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF-GRVGTHWWAFQLQGDDIIPDIVT 110 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf-gRtG~~~~~~~~~g~~v~PDivt 110 (114)
+-+|+|.+.|.| ...+.++.+..+.+...+.+...|+=+|=||+ .-||. .. ... +++|+++
T Consensus 130 ~dliVDalfGtG-~~~~l~~~~~~li~~iN~~~~~vvAiDiPSGl~~dtG~-~~---~~a--v~Ad~Tv 191 (508)
T PRK10565 130 VDLIVDALLGTG-LRQAPREPYAALIDQANAHPAPVVALDIPSGLLAETGA-TP---GAV--INADHTV 191 (508)
T ss_pred CcEEEEccccCC-CCCCCcHHHHHHHHHHhcCCCCEEEecCCCcccCCCCC-CC---Cce--ecCCEEE
Confidence 469999999975 45555667777777888888888999999999 34664 21 112 7777754
No 397
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.50 E-value=2.2e+02 Score=21.40 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=25.3
Q ss_pred EEEEEcccCCCCCccc------------CCHHHHHHHHHHHHHhCCeEEE
Q psy1628 43 CAFFAESLQSCGGQII------------PPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 43 AAviiEPv~g~gG~~~------------~~~~fl~~lr~lc~~~gillI~ 80 (114)
+-+|+=|...-.|... .+..+++.++++++++++.+|+
T Consensus 34 adlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~ 83 (258)
T cd07578 34 ARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVV 83 (258)
T ss_pred CCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEE
Confidence 4567767655444321 1225688999999999997775
No 398
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.28 E-value=1.8e+02 Score=20.32 Aligned_cols=19 Identities=5% Similarity=-0.108 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhCCeEE
Q psy1628 61 ANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI 79 (114)
..+-+.++++|+++|+.+|
T Consensus 134 ~~~~~~~~~~a~~~~~~~v 152 (188)
T cd01827 134 KEIQPMIDKIAKKLNLKLI 152 (188)
T ss_pred HHHHHHHHHHHHHcCCcEE
Confidence 4577789999999999886
No 399
>PRK05935 biotin--protein ligase; Provisional
Probab=32.21 E-value=28 Score=26.22 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.2
Q ss_pred hCCeEEEccccccccccCccchhhh
Q psy1628 74 AGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 74 ~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
++.++++|+-..|-||.|+ -|-+.
T Consensus 29 ~~~vv~A~~QTaGRGR~GR-~W~Sp 52 (190)
T PRK05935 29 ALTVISTREQTAGKGKFGK-SWHSS 52 (190)
T ss_pred CCEEEEECccCCCCCCCCC-eeeCC
Confidence 5679999999999999998 45443
No 400
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain.
Probab=32.13 E-value=28 Score=26.55 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.1
Q ss_pred hCCeEEEccccccccccCccchhhh
Q psy1628 74 AGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 74 ~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
++.++++|+=..|-||.|+ -|.+.
T Consensus 25 ~~~vv~A~~QTaGRGR~gr-~W~Sp 48 (237)
T TIGR00121 25 KGDLVVAEYQTAGRGRRGR-KWLSP 48 (237)
T ss_pred CCeEEEEcccCCCCCCCCC-cccCC
Confidence 6789999999999999998 55444
No 401
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=31.75 E-value=73 Score=19.91 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHhC-CeEEEccccccc
Q psy1628 60 PANYLREVYKHVRAAG-GVCVADEVQVGF 87 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~g-illI~DEV~tGf 87 (114)
....++.+.+.+++.. .++++||+..-.
T Consensus 63 ~~~~~~~~~~~~~~~~~~viiiDei~~~~ 91 (148)
T smart00382 63 GELRLRLALALARKLKPDVLILDEITSLL 91 (148)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 3445667777777777 999999998844
No 402
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=31.62 E-value=1.8e+02 Score=22.95 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=30.6
Q ss_pred CceEEEEEcccCCCCCcccC-----------CHHHHHHHHHHHHHhCCe-EEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIP-----------PANYLREVYKHVRAAGGV-CVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~-----------~~~fl~~lr~lc~~~gil-lI~DEV~tGf 87 (114)
.++.-+|+|++.+---.... -..++..|+.+++++|+. ++..++.+..
T Consensus 197 ~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~ 256 (317)
T PRK04301 197 ENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARP 256 (317)
T ss_pred CceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEecc
Confidence 47888999998652100000 013667899999999995 4566766643
No 403
>PF13173 AAA_14: AAA domain
Probab=31.62 E-value=34 Score=23.16 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=13.8
Q ss_pred HHHHHHHHHhCCeEEEccccc
Q psy1628 65 REVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 65 ~~lr~lc~~~gillI~DEV~t 85 (114)
+.+.+...+...++++||||-
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq~ 72 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQY 72 (128)
T ss_pred HHHHHhhccCCcEEEEehhhh
Confidence 333343223578999999996
No 404
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=31.01 E-value=1.2e+02 Score=24.45 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCC---eEEEcc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGG---VCVADE 82 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gi---llI~DE 82 (114)
+++.+.|.+.. +--++++.--+|..| +.++-..++++..|++|++.|. -+|.+.
T Consensus 142 ~~l~~~F~D~r-YikVdGKPv~~Iy~p-----~~~pd~~~~~~~wr~~a~~~G~~giyii~~~ 198 (345)
T PF14307_consen 142 RYLLPYFKDPR-YIKVDGKPVFLIYRP-----GDIPDIKEMIERWREEAKEAGLPGIYIIAVQ 198 (345)
T ss_pred HHHHHHhCCCC-ceeECCEEEEEEECc-----ccccCHHHHHHHHHHHHHHcCCCceEEEEEe
Confidence 35556666553 334567889999999 3357788999999999999995 466655
No 405
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=30.99 E-value=53 Score=26.38 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.8
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
...-.++++.++++++..++.+|+| .-||||.
T Consensus 55 ~lt~~e~~~~~~~I~~~~~iPviaD-~d~GyG~ 86 (285)
T TIGR02317 55 ITTLDEVAEDARRITRVTDLPLLVD-ADTGFGE 86 (285)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEE-CCCCCCC
Confidence 4566789999999999999999998 7888875
No 406
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.86 E-value=62 Score=25.32 Aligned_cols=23 Identities=9% Similarity=0.089 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 58 IPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 58 ~~~~~fl~~lr~lc~~~gillI~ 80 (114)
..+.++++.|.+.|++.|+.++.
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~s 74 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFS 74 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEE
Confidence 47889999999999999998875
No 407
>KOG3406|consensus
Probab=30.86 E-value=2.1e+02 Score=20.81 Aligned_cols=23 Identities=9% Similarity=-0.087 Sum_probs=20.1
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI 79 (114)
....|.|.+-+..||.+|.|.+|
T Consensus 59 ncdep~yvKLVeALcaeh~ipli 81 (134)
T KOG3406|consen 59 NCDEPMYVKLVEALCAEHQIPLI 81 (134)
T ss_pred cCCchHHHHHHHHHHhhcCCCeE
Confidence 35678999999999999999887
No 408
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.32 E-value=1.4e+02 Score=23.34 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=40.8
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC---CeEEEccccccc-cccCccchhhhhcCCCCCcCEEE
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAG---GVCVADEVQVGF-GRVGTHWWAFQLQGDDIIPDIVT 110 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g---illI~DEV~tGf-gRtG~~~~~~~~~g~~v~PDivt 110 (114)
+-+|+|.+.|.| ...+..+.++.+.+...+.. ...|+=+|=||+ .-||. ..+ -. +++|.++
T Consensus 135 ~dlIIDaLfGtG-l~~~l~~~~~~li~~iN~~~~~~~~viAIDIPSGl~adtG~-~~~---~a--v~Ad~Tv 199 (246)
T PLN03050 135 YDVIVDAIFGFS-FHGAPRAPFDTLLAQMVQQQKSPPPIVSVDVPSGWDVDEGD-VSG---TG--MRPDVLV 199 (246)
T ss_pred CCEEEEeccccC-CCCccchHHHHHHHHHHhhccCCCcEEEEeCCCcccCCCCC-cCC---ce--EeCCEEE
Confidence 579999999974 44455555666666666544 778888899999 34675 221 12 7778754
No 409
>KOG1270|consensus
Probab=30.23 E-value=33 Score=27.92 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=35.7
Q ss_pred cCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhh
Q psy1628 58 IPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQL 99 (114)
Q Consensus 58 ~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~ 99 (114)
--+++|++.+.++.+-.|.+||.++..|+..+.+. .|..|.
T Consensus 172 ~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~-i~~~E~ 212 (282)
T KOG1270|consen 172 KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGT-IFLAEI 212 (282)
T ss_pred hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcc-ccHHHH
Confidence 34899999999999999999999999999988887 666663
No 410
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=29.95 E-value=1.7e+02 Score=19.34 Aligned_cols=59 Identities=7% Similarity=-0.130 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcc--cCCCCC------cccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 15 IILLAVVHLFFERIFLSASLYPFLFLYPCAFFAES--LQSCGG------QIIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 15 ~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEP--v~g~gG------~~~~~~~fl~~lr~lc~~~gillI 79 (114)
......+...++++++.-. .. . ..+++.+ ...... ....-..|-+.++++|+++|+.+|
T Consensus 81 ~~~~~~~~~~l~~~i~~~~-~~---~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i 147 (179)
T PF13472_consen 81 DTSPEQYEQNLRRIIEQLR-PH---G--PVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFI 147 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT---S--EEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEE
T ss_pred cccHHHHHHHHHHHHHhhc-cc---C--cEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEE
Confidence 3445666677777776542 11 3 3444444 332221 233346778888899999988765
No 411
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.66 E-value=90 Score=23.67 Aligned_cols=75 Identities=11% Similarity=0.010 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccc
Q psy1628 15 IILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHW 94 (114)
Q Consensus 15 ~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~ 94 (114)
.-.+..+++.|.++|+++.. . -++|. | -+.+|.+.+.+...-....-=.|++++|.|+-..++
T Consensus 110 ~~Gv~mi~k~l~~vL~k~Gv-----~-----~I~~~-G----~~FDP~~HEAv~~~~~~~~~gtVi~V~qkGY~l~dR-- 172 (185)
T PRK14139 110 REGVELTLKQLTSAFEKGRV-----V-----EINPV-G----EKFDPHQHQAISMVPAEQEPNTVVAVLQKGYTIADR-- 172 (185)
T ss_pred HHHHHHHHHHHHHHHHHCCC-----c-----eeCCC-C----CCCChHHhheeeeecCCCCcCEEEEEeeCCcEeCCE--
Confidence 34567788889999998731 1 24552 3 366677777776544333334788999999844443
Q ss_pred hhhhhcCCCCCcCEEEeecC
Q psy1628 95 WAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 95 ~~~~~~g~~v~PDivt~gK~ 114 (114)
. +.|-.|+++|.
T Consensus 173 -----V---LRPA~V~Vak~ 184 (185)
T PRK14139 173 -----V---LRPALVTVAAP 184 (185)
T ss_pred -----e---ccCceEEeCCC
Confidence 1 78999998874
No 412
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=29.62 E-value=59 Score=26.32 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=27.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG 91 (114)
...-.+++..++++++..++.+|+| +-||||..-
T Consensus 59 ~l~~~e~~~~~~~I~~~~~lPv~aD-~dtGyG~~~ 92 (294)
T TIGR02319 59 FTSVSEQAINAKNIVLAVDVPVIMD-ADAGYGNAM 92 (294)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEE-CCCCCCCcH
Confidence 3444689999999999999999998 788887543
No 413
>PRK06955 biotin--protein ligase; Provisional
Probab=29.52 E-value=55 Score=26.06 Aligned_cols=25 Identities=44% Similarity=0.400 Sum_probs=20.5
Q ss_pred HhCCeEEEccccccccccCccchhhh
Q psy1628 73 AAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 73 ~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
..+.++++|+=..|-||.|+ -|.+.
T Consensus 63 ~~g~vvvA~~QTaGRGR~GR-~W~Sp 87 (300)
T PRK06955 63 PAPIVRVAYEQTAGRGRQGR-PWFAQ 87 (300)
T ss_pred CCCeEEEECccccCCCCCcC-cccCC
Confidence 46789999999999999998 55544
No 414
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.43 E-value=89 Score=23.66 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=24.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
..|++.-+.++.+.++++++-+|+-|.+..
T Consensus 181 ~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~ 210 (256)
T PF01297_consen 181 EEPSPKDLAELIKLIKENKVKCIFTEPQFS 210 (256)
T ss_dssp SSS-HHHHHHHHHHHHHTT-SEEEEETTS-
T ss_pred cCCCHHHHHHHHHHhhhcCCcEEEecCCCC
Confidence 468999999999999999999999887764
No 415
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=29.34 E-value=1.8e+02 Score=21.90 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCCeEEE
Q psy1628 62 NYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~ 80 (114)
.+++.++++++++++.+++
T Consensus 66 ~~~~~l~~~a~~~~i~i~~ 84 (279)
T TIGR03381 66 PAIKRFQALAKELGVVIPV 84 (279)
T ss_pred hHHHHHHHHHHHcCcEEEE
Confidence 5889999999999998875
No 416
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=29.31 E-value=1.8e+02 Score=22.56 Aligned_cols=38 Identities=11% Similarity=-0.079 Sum_probs=25.6
Q ss_pred EEEEEcccCCCCCccc-------CCHHHHHHHHHHHHHhCCeEEE
Q psy1628 43 CAFFAESLQSCGGQII-------PPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 43 AAviiEPv~g~gG~~~-------~~~~fl~~lr~lc~~~gillI~ 80 (114)
|-+|+=|.....|... .+..+++.++++++++++.+|+
T Consensus 32 adlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~ 76 (279)
T cd07579 32 AELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVA 76 (279)
T ss_pred CCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEE
Confidence 3456666554434321 2346899999999999998875
No 417
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=28.78 E-value=2e+02 Score=19.88 Aligned_cols=59 Identities=7% Similarity=-0.078 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCc---------------ccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 18 LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQ---------------IIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 18 ~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~---------------~~~~~~fl~~lr~lc~~~gillI 79 (114)
...+...++++++.-...- .....+++.|.+-.... ...-..|-+.++++|+++++.+|
T Consensus 87 ~~~~~~~~~~~i~~~~~~~---~~~~ii~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i 160 (199)
T cd01838 87 LDEYKENLRKIVSHLKSLS---PKTKVILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVI 160 (199)
T ss_pred HHHHHHHHHHHHHHHHhhC---CCCeEEEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEE
Confidence 3445555565555321000 25667777775432110 11123667788999999998777
No 418
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=28.77 E-value=70 Score=20.78 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHhCCeEEEccc
Q psy1628 59 PPANYLREVYKHVRAAGGVCVADEV 83 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI~DEV 83 (114)
.++...+.+..+|+++++.++.-+-
T Consensus 37 ~~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 37 ADPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC
Confidence 4557999999999999999876553
No 419
>PF12310 Elf-1_N: Transcription factor protein N terminal; InterPro: IPR022084 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with PF00178 from PFAM. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.
Probab=28.31 E-value=47 Score=23.34 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=22.2
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
...=|+|+||+++. + +-..|.. |..||+.|++
T Consensus 29 s~~PAVIVE~VP~a--------~-------l~~~Ysg-Lv~dde~t~~ 60 (108)
T PF12310_consen 29 SVFPAVIVEQVPSA--------D-------LLQGYSG-LVYDDEPTYM 60 (108)
T ss_pred CCCCeEEEeecCch--------H-------Hhccccc-eEEeecccce
Confidence 56679999999874 1 3334444 7788887766
No 420
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=28.21 E-value=54 Score=21.62 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
...-++++++++++|+.++-|.-.+
T Consensus 26 g~~A~~I~~~A~e~~VPi~~~~~LA 50 (82)
T TIGR00789 26 GEVAERIIEIAKKHGIPIVEDPDLV 50 (82)
T ss_pred CHHHHHHHHHHHHcCCCEEeCHHHH
Confidence 4667899999999999999997665
No 421
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.00 E-value=2e+02 Score=19.70 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCc---------ccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 18 LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQ---------IIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 18 ~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~---------~~~~~~fl~~lr~lc~~~gillI 79 (114)
...+...++++++.-.... ...--+++.|....... ...-..|-+.++++|+++++.+|
T Consensus 84 ~~~~~~~l~~~v~~~~~~~---~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~i 151 (191)
T cd01834 84 LEKFKTNLRRLIDRLKNKE---SAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHHHHHHHHHccc---CCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 4455556666665431001 23445566665432211 12234566778889999998777
No 422
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.87 E-value=67 Score=23.27 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCCeEEEcc
Q psy1628 62 NYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DE 82 (114)
+..+.+.++|+++++.+|+++
T Consensus 43 ~~a~~l~~~~~~~~~~liin~ 63 (180)
T PF02581_consen 43 ELARRLAELCQKYGVPLIIND 63 (180)
T ss_dssp HHHHHHHHHHHHTTGCEEEES
T ss_pred HHHHHHHHHhhcceEEEEecC
Confidence 456778889999998887754
No 423
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=27.85 E-value=65 Score=22.81 Aligned_cols=21 Identities=19% Similarity=0.099 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHhCCeEEE
Q psy1628 60 PANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~gillI~ 80 (114)
..+++.++.+.|++.|+-+++
T Consensus 42 ~~Dllge~v~a~h~~Girv~a 62 (132)
T PF14871_consen 42 KRDLLGEQVEACHERGIRVPA 62 (132)
T ss_pred CcCHHHHHHHHHHHCCCEEEE
Confidence 379999999999999998875
No 424
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=27.53 E-value=25 Score=26.02 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCeEEE
Q psy1628 61 ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~ 80 (114)
.++++.+++.|+++|+.++-
T Consensus 58 ~~~~~Gi~~~~~~~gi~ivg 77 (222)
T cd00396 58 EDVVDGVAEACNQLGVPIVG 77 (222)
T ss_pred HHHHHHHHHHHHHcCCeEec
Confidence 37888999999999998874
No 425
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=27.07 E-value=2.2e+02 Score=21.45 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=31.1
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHH---HHHHHHhCCeEEEcc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREV---YKHVRAAGGVCVADE 82 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~l---r~lc~~~gillI~DE 82 (114)
-++.++..-|- ++|..+|.+++ +++|++.|+-+|.++
T Consensus 23 ~~vt~~fyNPN------IhP~~Ey~~R~~~~~~~~~~~~i~~i~~~ 62 (176)
T PF02677_consen 23 FDVTGYFYNPN------IHPYEEYERRLEELKRFAEKLGIPLIEGD 62 (176)
T ss_pred CCeEEEEeCCC------CCcHHHHHHHHHHHHHHHHHcCCCEEecC
Confidence 58999999983 57889998765 478999999999987
No 426
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=27.05 E-value=3.1e+02 Score=21.75 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
.++|+...+ ..+-.+.+.|.... ..+.+..+..+.+.|.++|+++.+ .||.+-
T Consensus 116 ~E~er~v~~--------~gf~g~~l~p~~~~---~~~~~~~~~pi~~~a~~~gvpv~i---htG~~~ 168 (293)
T COG2159 116 EELERRVRE--------LGFVGVKLHPVAQG---FYPDDPRLYPIYEAAEELGVPVVI---HTGAGP 168 (293)
T ss_pred HHHHHHHHh--------cCceEEEecccccC---CCCCChHHHHHHHHHHHcCCCEEE---EeCCCC
Confidence 355555554 25666777775321 356666688999999999999999 676643
No 427
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=26.97 E-value=42 Score=24.58 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=12.0
Q ss_pred hCCeEEEccccccc
Q psy1628 74 AGGVCVADEVQVGF 87 (114)
Q Consensus 74 ~gillI~DEV~tGf 87 (114)
.|.++|+||++.-|
T Consensus 79 ~~~liviDEa~~~~ 92 (193)
T PF05707_consen 79 KGSLIVIDEAQNFF 92 (193)
T ss_dssp TT-EEEETTGGGTS
T ss_pred CCcEEEEECChhhc
Confidence 79999999999977
No 428
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.85 E-value=2.3e+02 Score=21.58 Aligned_cols=42 Identities=17% Similarity=-0.036 Sum_probs=27.4
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CeEEEc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG--GVCVAD 81 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g--illI~D 81 (114)
+.+--+-++|.-|....++...+-+++++++.+++| +.+.+|
T Consensus 130 D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd 173 (220)
T PRK08883 130 DLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID 173 (220)
T ss_pred CeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 566666677744433366667777888888877766 556566
No 429
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=26.84 E-value=92 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCeEEEcccc
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~ 84 (114)
.+.+.++.+.++++|+.+++|=..
T Consensus 70 ~~~~~~~~~~~~~~~~~v~~D~~~ 93 (196)
T cd00287 70 PEAVLDALEEARRRGVPVVLDPGP 93 (196)
T ss_pred HHHHHHHHHHHHHcCCeEEEeCCc
Confidence 467788888899999999999654
No 430
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=26.63 E-value=1.4e+02 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=27.2
Q ss_pred CceEEEEEcccCCCC--------CcccCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 40 LYPCAFFAESLQSCG--------GQIIPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 40 ~~iAAviiEPv~g~g--------G~~~~~~~fl~~lr~lc~~~gillI~ 80 (114)
.++.-+|+|++|.-. |....-.+++..+.++++++|+.+|+
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvil 205 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFI 205 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 366789999987521 11111235677899999999996544
No 431
>PRK08477 biotin--protein ligase; Provisional
Probab=26.27 E-value=60 Score=24.83 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=20.5
Q ss_pred HhCCeEEEccccccccccCccchhhh
Q psy1628 73 AAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 73 ~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
..+.++++|+-..|-||.|+ -|.+.
T Consensus 26 ~~~~vvvA~~QTaGRGR~gR-~W~Sp 50 (211)
T PRK08477 26 KAPFAIVAKEQTAGIGSRGN-SWEGK 50 (211)
T ss_pred CCCEEEEECccCCCCCCCCC-cccCC
Confidence 46789999999999999998 55554
No 432
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=26.23 E-value=2.6e+02 Score=20.74 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=25.6
Q ss_pred EEEEcccCCCCCcc---------cCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 44 AFFAESLQSCGGQI---------IPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 44 AviiEPv~g~gG~~---------~~~~~fl~~lr~lc~~~gillI~ 80 (114)
-+++=|...-.|.. ..+..+++.++++++++++.+++
T Consensus 34 dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 79 (253)
T cd07583 34 DLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVA 79 (253)
T ss_pred CEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEe
Confidence 45666765444432 23346899999999999998774
No 433
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=26.19 E-value=3e+02 Score=21.44 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccC-----------CHHHHHHHHHHHHHhCCe-EEEcccccc
Q psy1628 23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIP-----------PANYLREVYKHVRAAGGV-CVADEVQVG 86 (114)
Q Consensus 23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~-----------~~~fl~~lr~lc~~~gil-lI~DEV~tG 86 (114)
+.+.+++.+.. .++..+|+|++.+---.... -..++..|..+++++++. ++..+|.+.
T Consensus 180 d~l~~~i~~~~------~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~ 249 (310)
T TIGR02236 180 EKAEDLIKELN------NPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMAR 249 (310)
T ss_pred HHHHHHHHhcC------CCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeec
Confidence 34555665541 35788999887652100000 013446788899999994 556777664
No 434
>PLN02978 pyridoxal kinase
Probab=26.03 E-value=91 Score=24.76 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=23.0
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHH-HHHHhCCe
Q psy1628 43 CAFFAESLQSCGGQIIPPANYLREVYK-HVRAAGGV 77 (114)
Q Consensus 43 AAviiEPv~g~gG~~~~~~~fl~~lr~-lc~~~gil 77 (114)
.-+++||+++..|-...+++..+.+++ ++...+++
T Consensus 118 ~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adii 153 (308)
T PLN02978 118 LTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATML 153 (308)
T ss_pred CeEEECCcccCCCCccCChhHHHHHHHHHHhhCCee
Confidence 447889998876655566677777763 66555444
No 435
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=25.98 E-value=2.4e+02 Score=20.51 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHhCCeEEEc
Q psy1628 60 PANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~gillI~D 81 (114)
...+++.++++++++++.+|+=
T Consensus 61 ~~~~~~~l~~~a~~~~i~ii~G 82 (253)
T cd07197 61 DGPTLEALAELAKELGIYIVAG 82 (253)
T ss_pred CchHHHHHHHHHHHhCeEEEee
Confidence 3579999999999999988763
No 436
>KOG3974|consensus
Probab=25.97 E-value=96 Score=25.45 Aligned_cols=39 Identities=10% Similarity=-0.102 Sum_probs=31.5
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
+++-|+++=|..|. .+.--.-++++-+.+++.++.+++|
T Consensus 100 ~RlhavVIGPGLGR---dp~~~k~i~~iley~~~~dvP~VID 138 (306)
T KOG3974|consen 100 QRLHAVVIGPGLGR---DPAILKEIAKILEYLRGKDVPLVID 138 (306)
T ss_pred hheeEEEECCCCCC---CHHHHHHHHHHHHHHhcCCCcEEEc
Confidence 57889999998875 3444455677788999999999999
No 437
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=25.95 E-value=71 Score=23.91 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCeEEEcc
Q psy1628 62 NYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DE 82 (114)
..+++++++|+++|+.+|+|.
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 367778888999999999964
No 438
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=25.94 E-value=69 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy1628 16 ILLAVVHLFFERIFLSA 32 (114)
Q Consensus 16 ~~~~~~~~~~e~~~~~~ 32 (114)
+||++|++++|.++-..
T Consensus 10 vLLwIykkFlqP~i~~~ 26 (88)
T PF14975_consen 10 VLLWIYKKFLQPYIYPF 26 (88)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999998764
No 439
>PRK14158 heat shock protein GrpE; Provisional
Probab=25.67 E-value=1.3e+02 Score=22.94 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCeEEEccccccccccCcc
Q psy1628 15 IILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVR-AAGGVCVADEVQVGFGRVGTH 93 (114)
Q Consensus 15 ~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~-~~gillI~DEV~tGfgRtG~~ 93 (114)
.-.+..+.+.|.++|+++. |- -++|..| .+.+|.+.+.+...-. ...-=.|++++|.|+.-.++
T Consensus 119 ~~Gv~mi~k~l~~vLek~G--------v~--~I~~~~G----~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dR- 183 (194)
T PRK14158 119 IEGIRMTLSMLLSTLKKFG--------VT--PVEAEKG----TPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNER- 183 (194)
T ss_pred HHHHHHHHHHHHHHHHHCC--------CE--EecCCCC----CCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCE-
Confidence 3457778888999998862 11 2444334 3677888888876543 33445788999999843333
Q ss_pred chhhhhcCCCCCcCEEEeec
Q psy1628 94 WWAFQLQGDDIIPDIVTVVW 113 (114)
Q Consensus 94 ~~~~~~~g~~v~PDivt~gK 113 (114)
. +.|-.|+++|
T Consensus 184 ------V---LRpA~V~VsK 194 (194)
T PRK14158 184 ------L---LRPAMVSVAT 194 (194)
T ss_pred ------E---eecceeEeCC
Confidence 1 7888888887
No 440
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.26 E-value=1.2e+02 Score=23.48 Aligned_cols=76 Identities=12% Similarity=0.043 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCeEEEccccccccccCc
Q psy1628 14 YIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVR-AAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~-~~gillI~DEV~tGfgRtG~ 92 (114)
.+-.+..+++.|..+|+++. |- -++|. | .+.+|.+.+.+...-. ...-=.|++++|.|+--.++
T Consensus 116 l~eGv~mi~k~l~~vLek~G--------V~--~I~~~-G----e~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dR 180 (209)
T PRK14141 116 LIEGVEMTERAMLNALERHG--------VK--KLDPE-G----QKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGER 180 (209)
T ss_pred HHHHHHHHHHHHHHHHHHCC--------CE--EECCC-C----CCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCE
Confidence 33456777889999999863 11 24553 3 4677888888775543 33345788999999844443
Q ss_pred cchhhhhcCCCCCcCEEEeecC
Q psy1628 93 HWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 93 ~~~~~~~~g~~v~PDivt~gK~ 114 (114)
. +.|-+|+++|+
T Consensus 181 -------V---LRpA~V~Vsk~ 192 (209)
T PRK14141 181 -------V---LRPAMVGVAKG 192 (209)
T ss_pred -------e---ecccEEEECCC
Confidence 1 78888888873
No 441
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.01 E-value=69 Score=21.28 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 59 PPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
.++.....+..+|.++++.++.-+-+.=+|+
T Consensus 39 a~~~vv~~l~~lceek~Ip~v~V~s~~~LGk 69 (84)
T PRK13600 39 VEVYLMTRVLSQINQKNIPVSFFKSKHALGK 69 (84)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 4466889999999999999999888875554
No 442
>PLN02590 probable tyrosine decarboxylase
Probab=24.98 E-value=2e+02 Score=25.21 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 12 GRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 12 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
+++-...+.+++.+++-.++. ..+.+|+..-....-|.+-| +++|.++|++||+-|=+|=-.-|+
T Consensus 265 ~~~~md~~~L~~~I~~d~~~g-------~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~ 329 (539)
T PLN02590 265 TNYGMPPESLEEAISHDLAKG-------FIPFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGN 329 (539)
T ss_pred CCCcCCHHHHHHHHHHHHhcC-------CCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhh
Confidence 344555666666666555442 46677887776665555544 578999999999999999666655
No 443
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=24.88 E-value=2.1e+02 Score=24.03 Aligned_cols=51 Identities=24% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
....++++.++++. .+.++- .|+ ..+.+.+..+.+.++++|+.+++|=++.
T Consensus 57 ~~~~~q~~a~~~d~--------~~~~ik-------~G~-l~~~e~~~~i~~~~k~~g~~vv~DPv~~ 107 (448)
T PRK08573 57 EVVAAQIEAVWEDM--------GIDAAK-------TGM-LSNREIIEAVAKTVSKYGFPLVVDPVMI 107 (448)
T ss_pred HHHHHHHHHHHhcC--------CCCEEE-------ECC-cCCHHHHHHHHHHHHHcCCCEEEcCccc
Confidence 44566777777764 122222 244 4578999999999999999999997754
No 444
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=24.85 E-value=2.4e+02 Score=21.82 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhCCeEEEc
Q psy1628 61 ANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~D 81 (114)
..+++.++++|+++++.+|+-
T Consensus 75 ~~~~~~l~~~a~~~~i~iv~G 95 (297)
T cd07564 75 GPELERLAEAARENGIYVVLG 95 (297)
T ss_pred CHHHHHHHHHHHHcCcEEEEe
Confidence 357889999999999988863
No 445
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=24.84 E-value=2.4e+02 Score=20.15 Aligned_cols=38 Identities=0% Similarity=-0.190 Sum_probs=25.5
Q ss_pred CceEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 40 LYPCAFFAESLQ-SCGGQIIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 40 ~~iAAviiEPv~-g~gG~~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
+++..||.-|-+ +. .....+ -..+|+.|-+|++.++-.
T Consensus 74 g~i~lVInt~dp~~~---~~~~~D-~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 74 GKIDMLIFFRDPLTA---QPHDPD-VKALLRLADVWNIPVATN 112 (142)
T ss_pred CceeEEEEecCCCCC---Ccccch-HHHHHHHHHHcCCCEEcC
Confidence 688888886632 32 111222 338999999999998753
No 446
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.56 E-value=79 Score=24.52 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCeEEEccccccccccCccc
Q psy1628 16 ILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHV-RAAGGVCVADEVQVGFGRVGTHW 94 (114)
Q Consensus 16 ~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc-~~~gillI~DEV~tGfgRtG~~~ 94 (114)
-.+..+++.|..+|+++. ++++.. .| +.+|.+.+++...- ..+.-=.|++++|.|+...++
T Consensus 139 ~Gv~mi~kql~~vL~k~G-------------Ve~I~~-~G--~FDP~~HEAv~~~~~~e~~~gtVveV~qkGY~l~dR-- 200 (211)
T PRK14160 139 KGIEMTVKQFKTSLEKLG-------------VEEIST-EG--EFDPNLHNAVMHVEDENYGENEIVEVFQKGYKRGDK-- 200 (211)
T ss_pred HHHHHHHHHHHHHHHHCC-------------CEEeCC-CC--CCChHHhceeeeeCCCCCCcCeEEEEeeCCcEeCCE--
Confidence 357778889999999873 222222 24 57888888887663 445556788999999944443
Q ss_pred hhhhhcCCCCCcCEEEeec
Q psy1628 95 WAFQLQGDDIIPDIVTVVW 113 (114)
Q Consensus 95 ~~~~~~g~~v~PDivt~gK 113 (114)
. +.|-.|+++|
T Consensus 201 -----V---LRpA~V~Va~ 211 (211)
T PRK14160 201 -----V---IRYSMVKVAN 211 (211)
T ss_pred -----e---eecceEEeCC
Confidence 1 6788887765
No 447
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=24.55 E-value=2.4e+02 Score=19.37 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHhCCeEE
Q psy1628 59 PPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI 79 (114)
.-..|-+.++++|+++++.+|
T Consensus 114 ~~~~~n~~l~~~a~~~~~~~i 134 (174)
T cd01841 114 RIQRLNDAIKELAPELGVTFI 134 (174)
T ss_pred HHHHHHHHHHHHHHHCCCEEE
Confidence 346788899999999997665
No 448
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=24.52 E-value=2.7e+02 Score=20.00 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=28.4
Q ss_pred CceEEEEEcccCCCCC-cccCC--------HHHHHHHHHHHHHhCCeE-EEccccccc
Q psy1628 40 LYPCAFFAESLQSCGG-QIIPP--------ANYLREVYKHVRAAGGVC-VADEVQVGF 87 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG-~~~~~--------~~fl~~lr~lc~~~gill-I~DEV~tGf 87 (114)
.++.-+++|++.+-.- ..... ..++..++++++++|+.+ +..++.+..
T Consensus 96 ~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~ 153 (209)
T TIGR02237 96 DSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDV 153 (209)
T ss_pred cCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEec
Confidence 3677899999864110 00001 223456788899999955 456666544
No 449
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=24.38 E-value=1.4e+02 Score=23.08 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
..|++.-+.++.+..+++++-+|+-|-+..
T Consensus 202 ~eps~~~l~~l~~~ik~~~v~~if~e~~~~ 231 (282)
T cd01017 202 VEPSPKQLAELVEFVKKSDVKYIFFEENAS 231 (282)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 468889999999999999999999999874
No 450
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=24.30 E-value=91 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCCeEEEcccc
Q psy1628 62 NYLREVYKHVRAAGGVCVADEVQ 84 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV~ 84 (114)
..++++.+.|+++|+-+|+|=-.
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEecc
Confidence 44556668899999999998555
No 451
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.27 E-value=3.1e+02 Score=20.51 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=26.8
Q ss_pred EEEEEcccCCCCCccc-------------CCHHHHHHHHHHHHHhCCeEEE
Q psy1628 43 CAFFAESLQSCGGQII-------------PPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 43 AAviiEPv~g~gG~~~-------------~~~~fl~~lr~lc~~~gillI~ 80 (114)
|=+++=|...-.|... ++..+++.++++++++++.+++
T Consensus 30 adlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~ 80 (259)
T cd07577 30 ADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELARETGAYIVA 80 (259)
T ss_pred CCEEEcccccccCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCcEEEe
Confidence 5567777655445432 1346789999999999998875
No 452
>PRK14155 heat shock protein GrpE; Provisional
Probab=24.21 E-value=1.4e+02 Score=23.04 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCeEEEccccccccccCc
Q psy1628 14 YIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHV-RAAGGVCVADEVQVGFGRVGT 92 (114)
Q Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc-~~~gillI~DEV~tGfgRtG~ 92 (114)
..-.+..+++.|.++|+++.. . -++|..| ...+|.+.+.+...- .+..-=.|++++|.|+-..++
T Consensus 95 i~~Gvemi~k~~~~~L~k~GV-----~-----~I~~~~G----~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dR 160 (208)
T PRK14155 95 FIIGVEMTEKELLGAFERNGL-----K-----KIDPAKG----DKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGR 160 (208)
T ss_pred HHHHHHHHHHHHHHHHHHCCC-----c-----eecCCCC----CCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCE
Confidence 444577888899999998731 1 2455344 366777777776553 333455688999999843443
Q ss_pred cchhhhhcCCCCCcCEEEeecC
Q psy1628 93 HWWAFQLQGDDIIPDIVTVVWN 114 (114)
Q Consensus 93 ~~~~~~~~g~~v~PDivt~gK~ 114 (114)
. +.|-.|+++|.
T Consensus 161 -------V---LRPA~V~Vak~ 172 (208)
T PRK14155 161 -------L---VRPAMVAVAAK 172 (208)
T ss_pred -------e---eccceEEECCC
Confidence 1 78888888873
No 453
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=24.20 E-value=2.2e+02 Score=20.83 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=23.9
Q ss_pred ccCCHHHHHHHHHHHHHhCC--eEEEcccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGG--VCVADEVQVG 86 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gi--llI~DEV~tG 86 (114)
..-++++++++.+.++++|. ++|.|-...+
T Consensus 18 ~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~ 49 (206)
T PF04015_consen 18 ATTHPEVVRAVVEMLKEAGAKEIIIAESPGSG 49 (206)
T ss_pred ccCCHHHHHHHHHHHHHcCCCceEEEeCCCcc
Confidence 56778999999999999999 5666655554
No 454
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=24.11 E-value=1.1e+02 Score=22.13 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCeEEEcc
Q psy1628 62 NYLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DE 82 (114)
..+++++++|+++|+.+++++
T Consensus 44 ~~~~~l~~~~~~~~~~l~i~~ 64 (196)
T TIGR00693 44 ALAEKLQELCRRYGVPFIVND 64 (196)
T ss_pred HHHHHHHHHHHHhCCeEEEEC
Confidence 356778999999999888864
No 455
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.49 E-value=2.6e+02 Score=19.38 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhCCeEE
Q psy1628 61 ANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI 79 (114)
..|-+.++++|+++++.+|
T Consensus 124 ~~~n~~~~~~a~~~~v~~v 142 (183)
T cd04501 124 KSLNRWLKDYARENGLLFL 142 (183)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 5777889999999997766
No 456
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=23.40 E-value=39 Score=25.96 Aligned_cols=40 Identities=30% Similarity=0.296 Sum_probs=25.2
Q ss_pred ceEEEEEcccCCCC--CcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 41 YPCAFFAESLQSCG--GQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 41 ~iAAviiEPv~g~g--G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
....-+-|.-..+- =++++++++++. ..-++||=||+-||
T Consensus 93 ~~~~~F~E~HSHAt~h~ly~~~~~~l~~------~~~lVLVDDEiSTG 134 (191)
T PF15609_consen 93 PPLLEFEEEHSHATDHLLYPPDPDLLRN------ARTLVLVDDEISTG 134 (191)
T ss_pred ccceeeeccccccccceecCCChHHhcC------CCCEEEEecCccch
Confidence 44555666653332 244556666655 44889999999996
No 457
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=23.25 E-value=81 Score=24.74 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=28.5
Q ss_pred cccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628 56 QIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 56 ~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
..+-++.|..+++..|+.+|..|.|- |=| ||+-+ -++.+
T Consensus 197 aR~idp~WvdeI~~~C~~~~~aFFFK--QWG-GrnkK-A~GR~ 235 (250)
T COG4422 197 ARPIDPQWVDEIEDMCRDAGTAFFFK--QWG-GRNKK-AFGRE 235 (250)
T ss_pred CCCCCHHHHHHHHHHHHhcCccchhH--hhC-CCCcc-ccccc
Confidence 45678999999999999999999876 323 45443 44444
No 458
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=23.11 E-value=3.3e+02 Score=20.50 Aligned_cols=41 Identities=15% Similarity=0.005 Sum_probs=28.0
Q ss_pred CceEEEEEcccCC--CCCcccCC----HHHHHHHHHHHHHhCCeEEE
Q psy1628 40 LYPCAFFAESLQS--CGGQIIPP----ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 40 ~~iAAviiEPv~g--~gG~~~~~----~~fl~~lr~lc~~~gillI~ 80 (114)
.++..+++|-++- ...-.... ....++|+++++++++.+|+
T Consensus 129 ~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 129 KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 5788999999754 11111111 23466899999999999887
No 459
>PRK04148 hypothetical protein; Provisional
Probab=23.10 E-value=1.1e+02 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=21.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~ 80 (114)
+-||++.+..+.+++++.|+-+++
T Consensus 84 irpp~el~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 84 IRPPRDLQPFILELAKKINVPLII 107 (134)
T ss_pred eCCCHHHHHHHHHHHHHcCCCEEE
Confidence 578999999999999999998775
No 460
>PTZ00344 pyridoxal kinase; Provisional
Probab=22.64 E-value=1e+02 Score=24.11 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=19.9
Q ss_pred cCCHHHHHHHHHHHHH---hC--CeEEEcccc
Q psy1628 58 IPPANYLREVYKHVRA---AG--GVCVADEVQ 84 (114)
Q Consensus 58 ~~~~~fl~~lr~lc~~---~g--illI~DEV~ 84 (114)
.++++..+.+.+++++ .+ +.+++|=|+
T Consensus 86 l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~ 117 (296)
T PTZ00344 86 INSADILREVLATVKEIKELRPKLIFLCDPVM 117 (296)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEECCcc
Confidence 3468888888888853 43 578889887
No 461
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=22.62 E-value=2.6e+02 Score=20.81 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhCCeEEE
Q psy1628 62 NYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~ 80 (114)
.+++.++++++++++.+++
T Consensus 65 ~~~~~l~~~a~~~~i~i~~ 83 (258)
T cd07584 65 PTVRLFSELAKELGVYIVC 83 (258)
T ss_pred cHHHHHHHHHHHcCeEEEE
Confidence 5789999999999998876
No 462
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=22.59 E-value=1.2e+02 Score=21.80 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=22.2
Q ss_pred cCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 58 IPPANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 58 ~~~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
......++.+.++++++|+-+|++-|-+
T Consensus 186 ~~~~~~l~~l~~~~~~~~~~via~gVe~ 213 (236)
T PF00563_consen 186 EEAQSLLQSLINLAKSLGIKVIAEGVES 213 (236)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEECE-S
T ss_pred hhHHHHHHHHHHHhhccccccceeecCC
Confidence 3457788889999999999999998876
No 463
>KOG3040|consensus
Probab=22.42 E-value=61 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.378 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHH--HHhCCeEEEcccc--------cccc----ccCccchhhhhcCCCCCcCEEE
Q psy1628 58 IPPANYLREVYKHV--RAAGGVCVADEVQ--------VGFG----RVGTHWWAFQLQGDDIIPDIVT 110 (114)
Q Consensus 58 ~~~~~fl~~lr~lc--~~~gillI~DEV~--------tGfg----RtG~~~~~~~~~g~~v~PDivt 110 (114)
-|++.|++..-+-. +-+-+++|=|++. +|++ |||+ |-.++..-..++||+++
T Consensus 181 KP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK-~rpsDe~k~~~~p~~~~ 246 (262)
T KOG3040|consen 181 KPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGK-FRPSDEEKPPVPPDLTA 246 (262)
T ss_pred CCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccc-cCCcccccCCCCcchhh
Confidence 57788887766555 7788899999875 3442 7897 66644322237888764
No 464
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=22.28 E-value=86 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCCeEEEc
Q psy1628 64 LREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 64 l~~lr~lc~~~gillI~D 81 (114)
++.+-.+|++.||.+++|
T Consensus 192 ~~d~L~ic~~~giP~VfD 209 (275)
T PF03851_consen 192 VEDVLPICEKLGIPMVFD 209 (275)
T ss_dssp HHHHHHHHHHHT--EEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 345668999999999999
No 465
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=22.24 E-value=3e+02 Score=20.83 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHhCCeEEE
Q psy1628 60 PANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~gillI~ 80 (114)
+..+++.++++++++++.+++
T Consensus 64 ~~~~~~~l~~la~~~~i~iv~ 84 (284)
T cd07573 64 PGPTTARFQALAKELGVVIPV 84 (284)
T ss_pred CCHHHHHHHHHHHHCCEEEEe
Confidence 346789999999999998876
No 466
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]
Probab=22.14 E-value=60 Score=25.30 Aligned_cols=37 Identities=30% Similarity=0.361 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhh
Q psy1628 62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQL 99 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~ 99 (114)
.++++..+.-...+.+++++|-..|-||.|+ -|.+..
T Consensus 9 ~~a~~~~~~~~~~~~vvvA~~QTaGRGR~GR-~W~Sp~ 45 (238)
T COG0340 9 TEAKERAASGAPEGTVVVAEEQTAGRGRRGR-KWSSPK 45 (238)
T ss_pred HHHHHHHHhCCCCCcEEEEeeeccCcCCCCC-cccCCC
Confidence 3444433333445559999999999999998 555543
No 467
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=22.00 E-value=1.4e+02 Score=19.68 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=20.0
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 52 SCGGQIIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 52 g~gG~~~~~~~fl~~lr~lc~~~gillI 79 (114)
.+-|... +..++++|+++++++|.-+-
T Consensus 89 ~nk~ala-~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 89 ANKGALA-DEALYEELREAARKNGVRIY 115 (117)
T ss_dssp S-HHHHH-SHHHHHHHHHHHHHHT-EEE
T ss_pred ECHHHhh-hHHHHHHHHHHHHHcCCEEE
Confidence 3445455 88999999999999998664
No 468
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.83 E-value=1.1e+02 Score=25.38 Aligned_cols=20 Identities=5% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCeEEEcc
Q psy1628 63 YLREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 63 fl~~lr~lc~~~gillI~DE 82 (114)
..+.++++|+++|+.+|+++
T Consensus 189 ~a~~L~~l~~~~~~~lIIND 208 (347)
T PRK02615 189 EAKKLKELCHRYGALFIVND 208 (347)
T ss_pred HHHHHHHHHHHhCCeEEEeC
Confidence 44678899999999998876
No 469
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.78 E-value=3e+02 Score=20.54 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhCCeEEE
Q psy1628 61 ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~ 80 (114)
...++.++++++++++.+++
T Consensus 61 ~~~~~~l~~~a~~~~~~i~~ 80 (261)
T cd07585 61 GPSTQALSDLARRYGLTILA 80 (261)
T ss_pred ChHHHHHHHHHHHcCcEEEE
Confidence 45788999999999998885
No 470
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.57 E-value=1.2e+02 Score=19.83 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 59 PPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 59 ~~~~fl~~lr~lc~~~gillI~D 81 (114)
.+-+..+.+++.|+++|+.+++=
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEE
Confidence 34567889999999999999864
No 471
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.56 E-value=2.5e+02 Score=18.42 Aligned_cols=36 Identities=0% Similarity=-0.215 Sum_probs=25.7
Q ss_pred CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
+++..+|--|-.. ...+.+| .+|+.|-++|+.++-+
T Consensus 66 ~~id~vIn~~~~~----~~~~~~~--~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 66 GEIQLVINTPSGK----RAIRDGF--SIRRAALEYKVPYFTT 101 (110)
T ss_pred CCeEEEEECCCCC----ccCccHH--HHHHHHHHhCCCEEec
Confidence 5777777776422 1344566 8999999999999843
No 472
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=21.51 E-value=1.6e+02 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=22.5
Q ss_pred cccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628 48 ESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF 87 (114)
Q Consensus 48 EPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf 87 (114)
=|-+.+ .|... +.+-++++ + ++++++|.||+..-|
T Consensus 144 i~nP~NPTG~~~-s~~~l~~l---~-~~~~~ii~DE~Y~~f 179 (335)
T PRK14808 144 IPNPNNPTGHVF-EREEIERI---L-KTGAFVALDEAYYEF 179 (335)
T ss_pred EeCCCCCCCCCc-CHHHHHHH---H-hcCCEEEEECchhhh
Confidence 354444 34443 44444444 4 589999999999887
No 473
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.31 E-value=1.3e+02 Score=21.72 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628 60 PANYLREVYKHVRAAGGVCVADEVQV 85 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~gillI~DEV~t 85 (114)
...+++.+.++|++.|+.+|++-|-+
T Consensus 188 ~~~~l~~l~~~~~~~~~~via~gVe~ 213 (241)
T smart00052 188 DEAIVQSIIELAQKLGLQVVAEGVET 213 (241)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecCCC
Confidence 45789999999999999999998876
No 474
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=21.29 E-value=3.7e+02 Score=20.34 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=28.0
Q ss_pred EEEEcccCC-CCCcccCCHHHHHHHHH-HHHHhCCeEE-Ecccc
Q psy1628 44 AFFAESLQS-CGGQIIPPANYLREVYK-HVRAAGGVCV-ADEVQ 84 (114)
Q Consensus 44 AviiEPv~g-~gG~~~~~~~fl~~lr~-lc~~~gillI-~DEV~ 84 (114)
-+++||+++ .+|....+++..+.+++ |+...+++.- ..|..
T Consensus 88 ~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~ 131 (246)
T PF08543_consen 88 PVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAE 131 (246)
T ss_dssp EEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHH
T ss_pred CEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHH
Confidence 799999998 67777789999999998 8877776554 44544
No 475
>PRK08330 biotin--protein ligase; Provisional
Probab=21.20 E-value=70 Score=24.34 Aligned_cols=36 Identities=33% Similarity=0.567 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628 61 ANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~ 98 (114)
.+|+++..+- ...+.++++|+-..|-||.|+ -|.+.
T Consensus 15 n~~~~~~~~~-~~~~~vv~A~~QT~GrGR~gr-~W~Sp 50 (236)
T PRK08330 15 NEYAKRIAPD-EEEGTVIVADRQTAGHGRKGR-AWASP 50 (236)
T ss_pred HHHHHHHhcC-CCCCEEEEECccccCCCCCCC-eeeCC
Confidence 3455443221 256789999999999999998 55444
No 476
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=21.15 E-value=1.1e+02 Score=24.67 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=26.6
Q ss_pred ccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
..+-.+.+..++++++.-++.+|+| .-||||.
T Consensus 57 ~l~~~e~~~~~~~I~~~~~lPv~aD-~d~GyG~ 88 (290)
T TIGR02321 57 ILSMSTHLEMMRAIASTVSIPLIAD-IDTGFGN 88 (290)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEE-CCCCCCC
Confidence 3455679999999999999999998 7888874
No 477
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=21.08 E-value=3.4e+02 Score=20.16 Aligned_cols=38 Identities=8% Similarity=-0.170 Sum_probs=25.2
Q ss_pred EEEEEcccCCCCCcc-----------cCCHHHHHHHHHHHHHhCCeEEE
Q psy1628 43 CAFFAESLQSCGGQI-----------IPPANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 43 AAviiEPv~g~gG~~-----------~~~~~fl~~lr~lc~~~gillI~ 80 (114)
+-+|+=|...-.|.. ..+...++.++++++++++.+++
T Consensus 32 ~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~ 80 (265)
T cd07572 32 AKLVVLPECFNYPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVG 80 (265)
T ss_pred CCEEECCccccCcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEE
Confidence 446666765433322 22346789999999999997764
No 478
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=21.05 E-value=92 Score=24.59 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=26.7
Q ss_pred CCHHHHHH---HHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE
Q psy1628 59 PPANYLRE---VYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV 109 (114)
Q Consensus 59 ~~~~fl~~---lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv 109 (114)
++++.++. ..+.+.++|+.+|+|=|-.|....-+ -+..+... ...|+++
T Consensus 60 l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~-~~~~~LL~-~~~~~vI 111 (246)
T PF02110_consen 60 LTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRT-EFALELLN-NYKPTVI 111 (246)
T ss_dssp SSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHH-HHHHHHHC-HS--SEE
T ss_pred CCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHH-HHHHHHHH-hCCCcEE
Confidence 45544444 44667788999999999998743333 34555441 1566654
No 479
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=20.97 E-value=3.5e+02 Score=22.97 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCe-EEEcccccc
Q psy1628 18 LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGV-CVADEVQVG 86 (114)
Q Consensus 18 ~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gil-lI~DEV~tG 86 (114)
...+.++++.++++ .++.++.+ | +.++.+.++.+.+.+++++.. +|+|=|+..
T Consensus 63 ~~~~~~ql~~~~~d--------~~~~aik~-------G-~l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~ 116 (502)
T PLN02898 63 LDFVAEQLKSVLSD--------MPVDVVKT-------G-MLPSAEIVKVLCQALKEFPVKALVVDPVMVS 116 (502)
T ss_pred HHHHHHHHHHHHhC--------CCCCEEEE-------C-CcCCHHHHHHHHHHHHhCCCCCEEEcccccc
Confidence 45556788888865 35555554 3 245588999999999999885 999999753
No 480
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=20.64 E-value=3.7e+02 Score=20.07 Aligned_cols=54 Identities=9% Similarity=0.002 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccC--------CHHHHHHHHHHHHHhCCeEEE
Q psy1628 20 VVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIP--------PANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 20 ~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~--------~~~fl~~lr~lc~~~gillI~ 80 (114)
...+.+++.+++.. . =+-+++=|...-.|.... +..+++.++++++++++.++.
T Consensus 17 ~N~~~~~~~i~~a~------~-gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~ 78 (252)
T cd07575 17 ANLAHFEEKIEQLK------E-KTDLIVLPEMFTTGFSMNAEALAEPMNGPTLQWMKAQAKKKGAAITG 78 (252)
T ss_pred HHHHHHHHHHHHhh------c-CCCEEEeCCcCcCCCCccHHHhhcccCChHHHHHHHHHHHCCeEEEE
Confidence 34444555555432 2 244566666543343211 345788999999999986654
No 481
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=20.60 E-value=3.4e+02 Score=20.64 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhCCeEEE
Q psy1628 61 ANYLREVYKHVRAAGGVCVA 80 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~ 80 (114)
..+++.++++++++++.+|+
T Consensus 76 ~~~~~~l~~~a~~~~i~ii~ 95 (287)
T cd07568 76 GPTTKRFAALAKEYNMVLIL 95 (287)
T ss_pred ChHHHHHHHHHHHCCEEEEE
Confidence 35788999999999999886
No 482
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=20.48 E-value=3.8e+02 Score=21.88 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628 17 LLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG 86 (114)
Q Consensus 17 ~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG 86 (114)
..+.+.+.+++..++. ..+.+++.--.....|.+ +-++++.++|+++++-+=+|=-.-|
T Consensus 177 d~~~L~~~l~~~~~~g-------~~p~~vvat~Gtt~~Ga~----D~l~~i~~i~~~~~~wlHVDaA~gg 235 (373)
T PF00282_consen 177 DIEALEKALEKDIANG-------KTPFAVVATAGTTNTGAI----DPLEEIADICEKYNIWLHVDAAYGG 235 (373)
T ss_dssp -HHHHHHHHHHHHHTT-------EEEEEEEEEBS-TTTSBB-----SHHHHHHHHHHCT-EEEEEETTGG
T ss_pred hHHHhhhhhccccccc-------ccceeeeccCCCcccccc----cCHHHHhhhccccceeeeecccccc
Confidence 3444555555555431 345566666555444544 5578999999999999999976666
No 483
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=20.43 E-value=1e+02 Score=23.69 Aligned_cols=22 Identities=14% Similarity=-0.114 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCeEEEccc
Q psy1628 62 NYLREVYKHVRAAGGVCVADEV 83 (114)
Q Consensus 62 ~fl~~lr~lc~~~gillI~DEV 83 (114)
+.++.++++|+++|+.+|++..
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEe
Confidence 3566777889999999998544
No 484
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=20.40 E-value=3.1e+02 Score=19.06 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=27.9
Q ss_pred EEEcccCCCCCc-----------------ccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628 45 FFAESLQSCGGQ-----------------IIPPANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 45 viiEPv~g~gG~-----------------~~~~~~fl~~lr~lc~~~gillI~D 81 (114)
+|+=|.....|. ...+..+++.++++++++++.+++-
T Consensus 37 lvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G 90 (186)
T PF00795_consen 37 LVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAG 90 (186)
T ss_dssp EEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccc
Confidence 777777665555 1122689999999999999998876
No 485
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=20.33 E-value=1e+02 Score=23.04 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHH-----HhCCeEEEcccccccc
Q psy1628 61 ANYLREVYKHVR-----AAGGVCVADEVQVGFG 88 (114)
Q Consensus 61 ~~fl~~lr~lc~-----~~gillI~DEV~tGfg 88 (114)
..|..+++++.. ....++++||..+|.-
T Consensus 90 S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd 122 (213)
T cd03281 90 SAFMIDLYQVSKALRLATRRSLVLIDEFGKGTD 122 (213)
T ss_pred chHHHHHHHHHHHHHhCCCCcEEEeccccCCCC
Confidence 467777776654 3468999999999874
No 486
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.25 E-value=1.2e+02 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628 60 PANYLREVYKHVRAAGGVCVADEVQVGFGR 89 (114)
Q Consensus 60 ~~~fl~~lr~lc~~~gillI~DEV~tGfgR 89 (114)
-.+++..+|++++..++.+++| +-||||.
T Consensus 63 ~~e~~~~vrrI~~a~~lPv~vD-~dtGfG~ 91 (289)
T COG2513 63 LDEVLADARRITDAVDLPVLVD-IDTGFGE 91 (289)
T ss_pred HHHHHHHHHHHHhhcCCceEEe-ccCCCCc
Confidence 5789999999999999999998 7888875
No 487
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=20.23 E-value=1.4e+02 Score=22.61 Aligned_cols=19 Identities=5% Similarity=-0.073 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCeEEEcc
Q psy1628 64 LREVYKHVRAAGGVCVADE 82 (114)
Q Consensus 64 l~~lr~lc~~~gillI~DE 82 (114)
.+++.++|+++|+.+|+++
T Consensus 52 a~~l~~~~~~~~~~liInd 70 (211)
T PRK03512 52 VVAAIALGRRYQARLFIND 70 (211)
T ss_pred HHHHHHHHHHhCCeEEEeC
Confidence 4566788999999888853
No 488
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=20.23 E-value=1.1e+02 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhCCeEEEc
Q psy1628 61 ANYLREVYKHVRAAGGVCVAD 81 (114)
Q Consensus 61 ~~fl~~lr~lc~~~gillI~D 81 (114)
.+.+++++++|+++|+.+++.
T Consensus 125 ~~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 125 LEDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred HHHHHHHHHHHHHcCCcEEEE
Confidence 446677788999999998873
No 489
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=20.11 E-value=1.2e+02 Score=21.14 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCC-eEEEcccccccc
Q psy1628 62 NYLREVYKHVRAAGG-VCVADEVQVGFG 88 (114)
Q Consensus 62 ~fl~~lr~lc~~~gi-llI~DEV~tGfg 88 (114)
++++.+++.+.+++. ++|+||+.+.+.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 567888888777666 799999998764
No 490
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=20.06 E-value=2.4e+02 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=25.4
Q ss_pred ceEEEEEcccCCCC--------CcccCCHHHHHHHHHHHHHhCCeEE
Q psy1628 41 YPCAFFAESLQSCG--------GQIIPPANYLREVYKHVRAAGGVCV 79 (114)
Q Consensus 41 ~iAAviiEPv~g~g--------G~~~~~~~fl~~lr~lc~~~gillI 79 (114)
+...+++|++|.-. |....-.+++..+.++++++|+.++
T Consensus 170 ~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvl 216 (454)
T TIGR00416 170 NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIF 216 (454)
T ss_pred CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 56679999987621 1111123566778999999998443
Done!