RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1628
(114 letters)
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 135 bits (341), Expect = 4e-38
Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
P F AES+ S GQI P YLREVY VRAAGGVC+ADEVQVGFGRVG+HWWAF+ QG
Sbjct: 785 PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQG 844
Query: 102 DDIIPDIVT 110
++PDIVT
Sbjct: 845 --VVPDIVT 851
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 96.9 bits (242), Expect = 5e-25
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E +Q GG I+PP +L+ + K R G + +ADEVQ GFGR G +AF+ G
Sbjct: 223 VAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFG 281
Query: 102 DDIIPDIVTV 111
+ PDIVT+
Sbjct: 282 --VEPDIVTL 289
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 97.0 bits (242), Expect = 9e-25
Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
F E + G I P YL++VY VRA GGVC+ADEVQVG+GR+G ++W F+ QG
Sbjct: 745 LAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG 804
Query: 102 DDIIPDIVTV 111
++PDI+T+
Sbjct: 805 --VVPDIITM 812
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 91.9 bits (229), Expect = 3e-23
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E +Q GG I+PP YL+ + + R G + +ADEVQ GFGR G +
Sbjct: 192 VAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEH--- 248
Query: 102 DDIIPDIVTV 111
+ PDIVT+
Sbjct: 249 FGVEPDIVTL 258
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 66.0 bits (162), Expect = 6e-14
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG I P +L+ + + G + + DEVQ G GR G +A++ G
Sbjct: 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLFAYEHYG- 243
Query: 103 DIIPDIVTV 111
+ PDI+T+
Sbjct: 244 -VEPDILTL 251
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 62.8 bits (154), Expect = 6e-13
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG YL+ + + G + + DEVQ G GR G +A+Q G
Sbjct: 184 AAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYG- 241
Query: 103 DIIPDIVTV 111
I PDI+T+
Sbjct: 242 -IEPDIMTL 249
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 62.6 bits (153), Expect = 8e-13
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF E +Q GG IIPPA Y E+ + R + VADEV GFGR G W+ Q G
Sbjct: 222 AFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-EWFGSQHFG-- 278
Query: 104 IIPDIVTV 111
I PD++T+
Sbjct: 279 IKPDLMTI 286
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 62.1 bits (151), Expect = 1e-12
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A FAE +Q G I+PP +Y +++ K + G + V DEVQ G GR G W F ++
Sbjct: 207 ALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-W--FAIEHFG 263
Query: 104 IIPDIVTV 111
+ PDI+T+
Sbjct: 264 VEPDIITL 271
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 61.8 bits (151), Expect = 1e-12
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A F E +Q G + PPA YL + G + V DEVQ G GR G W+A Q G
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDG-- 242
Query: 104 IIPDIVT 110
+ PD+VT
Sbjct: 243 VTPDVVT 249
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 61.5 bits (150), Expect = 2e-12
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG ++PP N+ +E+ K G + + DEVQ G GR G +A + G
Sbjct: 224 AIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFG-- 280
Query: 104 IIPDIVTV 111
+ PDI+T+
Sbjct: 281 VEPDIITL 288
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 60.5 bits (147), Expect = 5e-12
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ-LQGD 102
AF AE + GG I+PP Y + + R + ++DEV GFGR+G H++A + + G
Sbjct: 223 AFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG-HFFASEAVFG- 280
Query: 103 DIIPDIVTV 111
I PDI+T
Sbjct: 281 -IQPDIITF 288
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 59.9 bits (146), Expect = 7e-12
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 43 CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
AF E + GG ++PP YL+ V + G + +ADEV GFGR G F +
Sbjct: 216 AAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK---MFACEH 272
Query: 102 DDIIPDIVTV 111
I+PDI+ +
Sbjct: 273 AGIVPDILCL 282
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 59.6 bits (145), Expect = 1e-11
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG + PP +L + + + G + +ADEVQ GFGR G +A +
Sbjct: 179 AAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFAC--EHY 235
Query: 103 DIIPDIVTV 111
+ PDI+T+
Sbjct: 236 GVTPDIMTL 244
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 58.1 bits (141), Expect = 3e-11
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AFF E +Q GG I+PP +L+ + + R G + VADEV GFGR G F + +
Sbjct: 218 AFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP---LFACEAEG 274
Query: 104 IIPDIVTV 111
++PD++TV
Sbjct: 275 VVPDLMTV 282
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 55.8 bits (135), Expect = 2e-10
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF E + GG I+PP Y ++ +R + VADEV GFGR G + + G
Sbjct: 221 AFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG-- 277
Query: 104 IIPDIVTV 111
I PDI+ +
Sbjct: 278 IKPDILVM 285
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 54.4 bits (131), Expect = 6e-10
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG I+PP YL V K G + + DEVQ G GR G F + ++
Sbjct: 234 AVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK---MFACEHEN 290
Query: 104 IIPDIVT 110
+ PDI+
Sbjct: 291 VQPDILC 297
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 54.4 bits (131), Expect = 7e-10
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 48 ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
E +Q GG I+P +++EV G + VADE+Q GF R G + F ++ D++PD
Sbjct: 226 EPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY---FAIEHFDVVPD 282
Query: 108 IVTV 111
++TV
Sbjct: 283 LITV 286
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 52.3 bits (126), Expect = 4e-09
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG----THWWAFQ 98
CAF E +Q G ++P YL++V + + +ADE+Q G GR G
Sbjct: 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDH---- 243
Query: 99 LQGDDIIPDIVT 110
+++ PDIV
Sbjct: 244 ---ENVKPDIVL 252
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 52.3 bits (126), Expect = 4e-09
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E + + GG ++PP +Y++ V + + G + ++DEV GFGR G AF
Sbjct: 216 AVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK---AFGFMNYG 272
Query: 104 IIPDIVT 110
+ PDI+T
Sbjct: 273 VKPDIIT 279
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 52.0 bits (125), Expect = 4e-09
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
P A E +Q GG I P +LR + + AG + DE+Q GFGR G +AF+ G
Sbjct: 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAG 290
Query: 102 DDIIPDIVT 110
IIPD+V
Sbjct: 291 --IIPDVVV 297
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 51.6 bits (124), Expect = 6e-09
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
AF E +Q G I+P YL++VY+ + + + DE+Q G GR G +
Sbjct: 180 AAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAH---DHE 236
Query: 103 DIIPDIVT 110
+ PDIV
Sbjct: 237 GVKPDIVL 244
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 51.6 bits (124), Expect = 6e-09
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 48 ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
E++Q GG + P Y +YK R G + D++Q G GR G W + I PD
Sbjct: 214 ETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFN--ITPD 270
Query: 108 IVTV 111
+++
Sbjct: 271 LMSF 274
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 50.7 bits (121), Expect = 1e-08
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
P A E++Q GG + P+ +L+++ + R + DEVQ GFGR GT +AF+ G
Sbjct: 207 PAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAG 265
Query: 102 DDIIPDIV 109
I PD V
Sbjct: 266 --IEPDFV 271
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 50.4 bits (121), Expect = 1e-08
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG I+P +L + + R G V +ADEVQ GF R G W+A + +G
Sbjct: 222 AVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG-AWFACEHEG-- 278
Query: 104 IIPDIVT 110
I+PD++T
Sbjct: 279 IVPDLIT 285
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 50.5 bits (121), Expect = 1e-08
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF E +Q G IPP +L+ + + + +ADE+Q G GR G F D+
Sbjct: 189 AFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK---LFACDWDN 245
Query: 104 IIPDI 108
+ PD+
Sbjct: 246 VTPDM 250
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 49.3 bits (118), Expect = 4e-08
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 48 ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
E + GG I+PP ++L+++ + G + + DEVQ GFGR G W F Q ++PD
Sbjct: 214 EPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG-EW--FAAQTFGVVPD 270
Query: 108 IVTV 111
I+T+
Sbjct: 271 IMTI 274
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 49.2 bits (117), Expect = 4e-08
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 35 YPFLFLYP----CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90
Y F + P A FAE +Q G ++PP N+ +E+ K + G + V DEVQ G GR
Sbjct: 212 YVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRT 271
Query: 91 GTHWWA---FQLQGDDII 105
G W+A F+++ D II
Sbjct: 272 GK-WFASEWFEVKPDLII 288
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 49.0 bits (117), Expect = 5e-08
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF AE + GG I PPA Y ++ ++ + +ADEV FGR+GT F +
Sbjct: 263 AFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT---MFGCDKYN 319
Query: 104 IIPDIVTV 111
I PD+V++
Sbjct: 320 IKPDLVSL 327
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 49.0 bits (117), Expect = 5e-08
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG----THWWAFQ 98
AF E +Q G +IPP YL+ V + + +ADE+Q G R G W
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDW---- 281
Query: 99 LQGDDIIPDIV 109
+++ PD+V
Sbjct: 282 ---EEVRPDVV 289
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 48.6 bits (117), Expect = 6e-08
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 43 CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
AF E L Q GG P YLR++ + G + +ADE+ GFGR G +A +
Sbjct: 197 AAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGK-LFACEH-- 253
Query: 102 DDIIPDIVTV 111
+ PDI+ +
Sbjct: 254 AGVTPDILCL 263
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 48.7 bits (116), Expect = 7e-08
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG I+P ++ + R G V +ADEVQ GF R G F + +
Sbjct: 200 ALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM---FACEHEG 256
Query: 104 IIPDIVTV 111
PD++T
Sbjct: 257 PEPDLITT 264
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 48.5 bits (116), Expect = 8e-08
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A ES+ G ++PP YL V + G V +ADEV GFGR G W+A +
Sbjct: 217 AILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEH--FG 273
Query: 104 IIPDIVT 110
++PD++T
Sbjct: 274 VVPDLIT 280
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 48.3 bits (116), Expect = 9e-08
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 42 PCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100
AF E L Q GG + YL E+ + G + + DE+ GFGR GT F +
Sbjct: 200 IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT---LFACE 256
Query: 101 GDDIIPDIVTV 111
+ PDI+ +
Sbjct: 257 QAGVSPDIMCL 267
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 48.0 bits (115), Expect = 1e-07
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 48 ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
E +Q GG I +L+EV + G + + DEVQ G GR GT F + + PD
Sbjct: 174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT---LFAYEQFGLDPD 230
Query: 108 IVTV 111
IVTV
Sbjct: 231 IVTV 234
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 48.1 bits (115), Expect = 1e-07
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG A +L+ + + + + + DEVQ G GR G ++A++ G
Sbjct: 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG-KFFAYEHYG- 229
Query: 103 DIIPDIVTV 111
I PDI+T+
Sbjct: 230 -IEPDIITL 237
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 48.1 bits (115), Expect = 1e-07
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 11/72 (15%)
Query: 44 AFFAESLQSCGGQIIPPANY---LREVY-KHVRAAGGVCVADEVQVGFGRVGTHWWAFQL 99
AF AE +Q GG I+PPAN+ +REV +H G + +ADEV GFGR G+ W+ +
Sbjct: 216 AFIAEPVQGAGGVIVPPANFWPLVREVCDRH----GILLIADEVVTGFGRTGS-WFGSRG 270
Query: 100 QGDDIIPDIVTV 111
G + PDI+ +
Sbjct: 271 WG--VKPDIMCL 280
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 48.0 bits (114), Expect = 1e-07
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
F AE Q GG I PP +Y E+ + R + ADEV GFGR G W+A + G +
Sbjct: 225 GFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG-EWFAHEHFGFE 283
Query: 104 IIPDIVTV 111
PD +++
Sbjct: 284 --PDTLSI 289
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 48.1 bits (114), Expect = 1e-07
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG I+PP YL V G + + DEVQ G GR G F + +
Sbjct: 227 AIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK---MFACEHEG 283
Query: 104 IIPDIV 109
+ PDI+
Sbjct: 284 VQPDIL 289
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 47.3 bits (113), Expect = 2e-07
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A F E +Q+ GG PP Y V + + V+DEV FGR+G + + G
Sbjct: 223 AAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG-EMFGCERFG- 280
Query: 103 DIIPDIVT 110
+PDI+T
Sbjct: 281 -YVPDIIT 287
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 47.0 bits (112), Expect = 3e-07
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 43 CAFFAESLQSCGGQIIPPAN--YLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100
A F E +Q GG I PA +L+ + AG + V DEVQ G GR G + WA +
Sbjct: 169 AAVFVEPVQGEGG--IYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWAHEAY 225
Query: 101 GDDIIPDIVTV 111
G + PDI+T+
Sbjct: 226 G--VEPDIMTL 234
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 47.1 bits (112), Expect = 3e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
P A E++Q GG P +L+++ + + G + + DEVQ GF R G +AF+ G
Sbjct: 226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAG 284
Query: 102 DDIIPDIV 109
I PDI+
Sbjct: 285 --IEPDII 290
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 46.7 bits (111), Expect = 3e-07
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 44 AFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E L Q GG I P YL+ + + + DEV GFGR G F + +
Sbjct: 226 AIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK---MFACEHE 282
Query: 103 DIIPDIVTV 111
++ PDI+T
Sbjct: 283 NVTPDIMTA 291
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 46.3 bits (110), Expect = 4e-07
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91
AF E +Q G IIPPA Y V + A + DE+Q G GR G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG 237
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 44.0 bits (104), Expect = 3e-06
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E + G +IPP YL+ + + G + + DEV GFGR+G F Q
Sbjct: 218 AVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA---PFAAQYFG 274
Query: 104 IIPDIVTV 111
+ PD++T
Sbjct: 275 VTPDLLTC 282
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 43.8 bits (104), Expect = 4e-06
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF AE + GG + PPA Y + ++ + +ADEV GFGR+G+ F
Sbjct: 223 AFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS---MFGSDHYG 279
Query: 104 IIPDIVTV 111
I PD++TV
Sbjct: 280 IEPDLITV 287
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 42.8 bits (101), Expect = 7e-06
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CA E +Q GG + +L+ + + + + DEVQ G GR G +A+ G
Sbjct: 181 CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYG- 238
Query: 103 DIIPDIVT 110
+ PDI+T
Sbjct: 239 -VTPDILT 245
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 42.0 bits (99), Expect = 1e-05
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
AF AE++++ Q+ P Y + V + + + DE+ G GR G W+ Q
Sbjct: 231 GAFIAEAVRNTDVQV-PSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG-EWFTH--QAY 286
Query: 103 DIIPDIV 109
I PDI+
Sbjct: 287 GIEPDIL 293
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 41.9 bits (99), Expect = 2e-05
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHWW 95
F AE +Q GG N+ R + A +C + DEVQ G G GT W
Sbjct: 227 ACFIAEPIQGEGGD-----NHFRPEF--FAAMRELCDEHDALLIFDEVQTGVGLTGT-AW 278
Query: 96 AFQLQGDDIIPDIV 109
A+Q G + PDIV
Sbjct: 279 AYQQLG--VRPDIV 290
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 42.0 bits (99), Expect = 2e-05
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 14/73 (19%)
Query: 44 AFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT-----HWWAF 97
AF AE + + G ++PP Y + + + + +ADEV G GR G HW
Sbjct: 202 AFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHW--- 258
Query: 98 QLQGDDIIPDIVT 110
+ PDI+T
Sbjct: 259 -----GVEPDIMT 266
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 42.0 bits (99), Expect = 2e-05
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG PA +++ + + G + +ADEVQ GF R G F ++ +
Sbjct: 201 AIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAMEHHE 257
Query: 104 IIPDIVT 110
+ D+ T
Sbjct: 258 VAADLTT 264
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 41.1 bits (96), Expect = 3e-05
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT---HWWAFQLQ 100
A E +Q GG + +L V + V DE+Q G GR GT HW
Sbjct: 190 AVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHW------ 243
Query: 101 GDDIIPDIVTV 111
+ + PDIVT+
Sbjct: 244 QEQVTPDIVTL 254
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 40.3 bits (95), Expect = 6e-05
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CA E +Q GG I +L+ + + + + DEVQ G GR G +A+
Sbjct: 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAY--MHY 242
Query: 103 DIIPDIVT 110
+ PDI+T
Sbjct: 243 GVTPDILT 250
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 40.2 bits (95), Expect = 7e-05
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
P A E++Q GG + A +L+ + K R + + D++Q G GR GT F +
Sbjct: 199 PAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTF---FSFER 255
Query: 102 DDIIPDIVTV 111
I PDIVT+
Sbjct: 256 AGITPDIVTL 265
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 40.0 bits (93), Expect = 8e-05
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 43 CAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
CA E LQ GG + YLR + A G +ADE+ GFGR GT F +
Sbjct: 238 CALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT---LFACEQ 294
Query: 102 DDIIPDIV 109
++PD++
Sbjct: 295 AGVMPDLL 302
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 39.2 bits (92), Expect = 1e-04
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
P A E++Q GG + +L+ + K R + + D++Q G GR GT +++F+ G
Sbjct: 195 PAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG 253
Query: 102 DDIIPDIVTV 111
I PDIV +
Sbjct: 254 --IEPDIVCL 261
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 38.1 bits (89), Expect = 3e-04
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 48 ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
E +Q GG I +++++ + G + + DEVQ G GR GT +A++L G I PD
Sbjct: 186 EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSG--IEPD 242
Query: 108 IVT 110
I+T
Sbjct: 243 IMT 245
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 37.9 bits (89), Expect = 4e-04
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 44 AFFAESLQSCGGQIIPPANYL---REVY-KHVRAAGGVCVADEVQVGFGRVGTHWWAFQL 99
A E + G ++PP YL RE+ KH G + + DEV GFGR+G AF
Sbjct: 221 AVIVEPMAGSAGVLVPPKGYLQRLREICDKH----GILLIFDEVITGFGRLGA---AFAA 273
Query: 100 QGDDIIPDIVTV 111
+ + PDI+T
Sbjct: 274 ERFGVTPDIITF 285
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 37.9 bits (89), Expect = 4e-04
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT---HWWAFQLQ 100
A E +Q GG P +L+ + + G + + DEVQ G GR G H WA
Sbjct: 178 AILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWA---- 233
Query: 101 GDDIIPDIVTV 111
+ PDI+ V
Sbjct: 234 --GVTPDIMAV 242
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 37.9 bits (88), Expect = 4e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG + P ++ + G + +ADEVQ GF R G F ++ D
Sbjct: 201 AILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK---LFAMEYYD 257
Query: 104 IIPDIVTV 111
+ PD++T+
Sbjct: 258 VKPDLITM 265
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 35.7 bits (83), Expect = 0.002
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHWWA 96
AF AE++ +PP +K +R VC + DEV G GR GT
Sbjct: 202 AFVAETVVGATAGAVPPV---PGYFKRIRE---VCDRYGVLLILDEVMCGMGRTGT---L 252
Query: 97 FQLQGDDIIPDIVTV 111
F + D + PD+VT+
Sbjct: 253 FACEEDGVAPDLVTI 267
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 35.5 bits (82), Expect = 0.002
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
F AE +Q GG +LR + + + DEVQ G G GT WA+Q G
Sbjct: 221 CFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG-- 277
Query: 104 IIPDIV 109
+ PDIV
Sbjct: 278 VQPDIV 283
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 34.7 bits (80), Expect = 0.005
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CA E +Q GG I +L+ + + + + DEVQ G GR G +A+ G
Sbjct: 185 CAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYG- 242
Query: 103 DIIPDIVT 110
+ PD++T
Sbjct: 243 -VTPDVLT 249
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 34.7 bits (80), Expect = 0.005
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 51 QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVT 110
Q GG I +L+ V K G + +ADE+ GFGR G F + I PDI+
Sbjct: 215 QGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK---LFACEHAGIAPDILC 271
Query: 111 V 111
+
Sbjct: 272 L 272
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 33.3 bits (76), Expect = 0.014
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q G + ++++ + + + G + + DEVQ G GR G +AF+ G
Sbjct: 168 AVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTG-KLYAFEHYG-- 224
Query: 104 IIPDIVTV 111
I PDI T+
Sbjct: 225 IEPDIFTL 232
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 33.3 bits (76), Expect = 0.015
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +QS GG ++ R++ + + DEVQ G G G +WA + D
Sbjct: 254 AIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWNLD 312
Query: 104 IIPDIVT 110
PD+VT
Sbjct: 313 DPPDMVT 319
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 32.7 bits (74), Expect = 0.030
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91
A E +Q GG + P + + + G V +ADEVQ GF R G
Sbjct: 201 AIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG 248
>gnl|CDD|241211 cd12767, RRM2_SRSF1, RNA recognition motif 2 in
serine/arginine-rich splicing factor 1 (SRSF1) and
similar proteins. This subgroup corresponds to the
RRM2 of SRSF1, also termed alternative-splicing factor
1 (ASF-1), or pre-mRNA-splicing factor SF2, P33
subunit, a splicing regulatory serine/arginine (SR)
protein involved in constitutive and alternative
splicing, nonsense-mediated mRNA decay (NMD), mRNA
export and translation. It also functions as a
splicing-factor oncoprotein that regulates apoptosis
and proliferation to promote mammary epithelial cell
transformation. SRSF1 is a shuttling SR protein and
contains two N-terminal RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), separated by a long
glycine-rich spacer, and a C-terminal SR domains rich
in serine-arginine dipeptides. .
Length = 76
Score = 30.8 bits (69), Expect = 0.042
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 58 IPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90
+PP+ +++ H+R AG VC AD + G G V
Sbjct: 8 LPPSGSWQDLKDHMREAGDVCYADVFRDGTGVV 40
>gnl|CDD|241212 cd12768, RRM2_SRSF9, RNA recognition motif 2 in vertebrate
serine/arginine-rich splicing factor 9 (SRSF9). This
subgroup corresponds to the RRM2 of SRSF9, also termed
pre-mRNA-splicing factor SRp30C, an essential splicing
regulatory serine/arginine (SR) protein that has been
implicated in the activity of many elements that
control splice site selection, the alternative splicing
of the glucocorticoid receptor beta in neutrophils and
in the gonadotropin-releasing hormone pre-mRNA. SRSF9
can also interact with other proteins implicated in
alternative splicing, including YB-1, rSLM-1, rSLM-2,
E4-ORF4, Nop30, and p32. SRSF9 contains two N-terminal
RNA recognition motifs (RRMs), also termed RBDs (RNA
binding domains) or RNPs (ribonucleoprotein domains),
followed by an unusually short C-terminal RS domains
rich in serine-arginine dipeptides. .
Length = 76
Score = 30.7 bits (69), Expect = 0.044
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 58 IPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90
+PP+ +++ H+R AG VC AD + G G V
Sbjct: 8 LPPSGSWQDLKDHMREAGDVCYADVQKDGMGVV 40
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 31.7 bits (72), Expect = 0.052
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG +++ + G + +ADEVQ G GR GT F ++
Sbjct: 202 AIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTL---FAMEQMG 258
Query: 104 IIPDIVT 110
+ D+ T
Sbjct: 259 VAADLTT 265
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 30.5 bits (69), Expect = 0.13
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 79 VADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
+ DE+ VGFGR GT F + I PD
Sbjct: 253 IHDEIAVGFGRTGT---MFACEQAGIRPD 278
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 30.2 bits (68), Expect = 0.17
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 79 VADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV 111
+ADE+ GFGR G F + PDI+ V
Sbjct: 239 IADEIATGFGRTGE---LFATLAAGVTPDIMCV 268
>gnl|CDD|241045 cd12601, RRM2_SRSF1_like, RNA recognition motif 2 in
serine/arginine-rich splicing factor SRSF1, SRSF9 and
similar proteins. This subfamily corresponds to the
RRM2 of serine/arginine-rich splicing factor SRSF1,
SRSF9 and similar proteins. SRSF1, also termed ASF-1,
is a shuttling SR protein involved in constitutive and
alternative splicing, nonsense-mediated mRNA decay
(NMD), mRNA export and translation. It also functions
as a splicing-factor oncoprotein that regulates
apoptosis and proliferation to promote mammary
epithelial cell transformation. SRSF9, also termed
SRp30C, has been implicated in the activity of many
elements that control splice site selection, the
alternative splicing of the glucocorticoid receptor
beta in neutrophils and in the gonadotropin-releasing
hormone pre-mRNA. SRSF9 can also interact with other
proteins implicated in alternative splicing, including
YB-1, rSLM-1, rSLM-2, E4-ORF4, Nop30, and p32. Both,
SRSF1 and SRSF9, contain two N-terminal RNA recognition
motifs (RRMs), also termed RBDs (RNA binding domains)
or RNPs (ribonucleoprotein domains), and a C-terminal
RS domains rich in serine-arginine dipeptides. .
Length = 74
Score = 27.8 bits (62), Expect = 0.39
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 58 IPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90
+PP +++ H+R AG VC AD + G G V
Sbjct: 8 LPPTGSWQDLKDHMREAGDVCYADVYRDGTGVV 40
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 29.0 bits (65), Expect = 0.46
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 50 LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV 109
+Q GG YL + + G + + DE+ GFGR G F L+ ++PDI+
Sbjct: 216 VQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK---LFALEHAGVVPDIM 272
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 27.2 bits (61), Expect = 2.2
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH-WWAFQLQGD 102
A E + G + P +L + + G + + DEV GF RV +
Sbjct: 203 AVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVALGGAQGY----Y 257
Query: 103 DIIPDIVT 110
+ PD+ T
Sbjct: 258 GVEPDLTT 265
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in
mitochondrial fusion and in mitochondrial distribution
and morphology. Mutations in its Drosophila homolog
(misato) lead to irregular chromosome segregation
during mitosis. Deletion of the budding yeast homolog
DML1 is lethal and unregulate expression of DML1 leads
to mitochondrial dispersion and abnormalities in cell
morphology. The Misato/DML1 protein family is conserved
from yeast to human, but its exact function is still
unknown.
Length = 493
Score = 26.9 bits (60), Expect = 2.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 90 VGTHWWAFQ 98
VGTHWW Q
Sbjct: 15 VGTHWWNLQ 23
>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton].
Length = 3164
Score = 26.9 bits (59), Expect = 2.7
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 64 LREVYKHVRAAGGVCVADEVQVG--FGRVGTHWWAFQ--LQGDDIIPDIV 109
LRE+ +R G +C+ E V G W+ Q L+ DD I I
Sbjct: 2200 LREIRSFIRPPGDLCIEMED-VCDLLGFEAKIWFGEQQSLRRDDFIRIIG 2248
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 26.4 bits (58), Expect = 3.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A E +Q GG + +++ + G + +ADEVQ G R G ++
Sbjct: 165 AVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKF---LAIEHYK 220
Query: 104 IIPDIVTV 111
+ PDIVT+
Sbjct: 221 VEPDIVTM 228
>gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional.
Length = 336
Score = 26.2 bits (58), Expect = 3.7
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 3 VPVLTECIIGRYIILLAVVHLFFERIFLSASLY 35
P T + +I + V F++I LS + Y
Sbjct: 69 FPTATLIMSLVAVISILVTFQNFDKIMLSGTEY 101
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 26.3 bits (58), Expect = 4.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 44 AFFAESLQSCG-GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT 92
A E L C G + +YLR + G +ADE+ VG GR GT
Sbjct: 224 ALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT 273
>gnl|CDD|168293 PRK05910, PRK05910, type III secretion system protein; Validated.
Length = 584
Score = 25.9 bits (57), Expect = 5.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 17 LLAVVHLFFERIFLSASLYPFLFLYPCAF 45
L V +F R SA L+P LFLY C
Sbjct: 44 LSIVFWVFSLRSSASARLFPSLFLYLCLL 72
>gnl|CDD|232834 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase]
ligase region. This model represents the
biotin--acetyl-CoA-carboxylase ligase region of
biotin--acetyl-CoA-carboxylase ligase. In Escherichia
coli and some other species, this enzyme is part of a
bifunction protein BirA that includes a small,
N-terminal biotin operon repressor domain. Proteins
identified by this model should not be called
bifunctional unless they are also identified by
birA_repr_reg (TIGR00122). The protein name suggests
that this enzyme transfers biotin only to
acetyl-CoA-carboxylase but it also transfers the biotin
moiety to other proteins. The apparent orthologs among
the eukaryotes are larger proteins that contain a
single copy of this domain [Protein fate, Protein
modification and repair].
Length = 237
Score = 25.4 bits (56), Expect = 6.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHW 94
Y E+ K + G + VA+ G GR G W
Sbjct: 13 QYALELAKEGKLKGDLVVAEYQTAGRGRRGRKW 45
>gnl|CDD|192232 pfam09220, LA-virus_coat, L-A virus, major coat protein. Members
of this family form the major coat protein of the
Saccharomyces cerevisiae L-A virus.
Length = 436
Score = 25.7 bits (56), Expect = 7.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 38 LFLYPCAFFAESLQSCGGQIIPPANYLREVY 68
FL P FFA +L G P N + +VY
Sbjct: 398 AFLQPETFFAAALACATGL-DAPLNGMGDVY 427
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.332 0.147 0.495
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,167,448
Number of extensions: 544104
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 104
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)