RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1628
(114 letters)
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 89.5 bits (223), Expect = 1e-22
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
AF AE + S GG I P Y+ + + A G + + DE Q G GR G +A Q D
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFAC--QRD 261
Query: 103 DIIPDIVTV 111
+ PDI+T+
Sbjct: 262 GVTPDILTL 270
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 87.2 bits (217), Expect = 9e-22
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A F E +QS GG I+PP +LR+ RA G + V DEV+VG R G F+ +G
Sbjct: 204 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 260
Query: 104 IIPDIVTV 111
+PDI+ +
Sbjct: 261 FVPDILVL 268
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 71.1 bits (175), Expect = 6e-16
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E +Q GG I+P +L + G V +ADEVQ GF R G W+A + +G
Sbjct: 226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEG 284
Query: 102 DDIIPDIVTV 111
I+PDIVT+
Sbjct: 285 --IVPDIVTM 292
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 69.9 bits (172), Expect = 1e-15
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E +Q GG I+P +L + R V +ADEVQ GF R G +A + +G
Sbjct: 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEG 286
Query: 102 DDIIPDIVTV 111
I PD++
Sbjct: 287 --IDPDLIVT 294
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 68.4 bits (168), Expect = 5e-15
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG +++ + G + +ADEVQ G GR GT +A + G
Sbjct: 201 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG- 258
Query: 103 DIIPDIVTV 111
+ PD+ T
Sbjct: 259 -VAPDLTTF 266
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 67.3 bits (165), Expect = 1e-14
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
E +QS GG ++ R++ R G + DEVQ G G G +WA + G
Sbjct: 260 AGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWGL 318
Query: 103 DIIPDIVTV 111
D D++T
Sbjct: 319 DDPADVMTF 327
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 67.2 bits (165), Expect = 1e-14
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
F E +Q GG +IPP N+ E+ K + G + V DEVQ+G GR G +A +
Sbjct: 214 AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFN- 271
Query: 103 DIIPDIVTV 111
+PD++T+
Sbjct: 272 -TVPDVITL 279
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 66.4 bits (163), Expect = 2e-14
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
A E +Q GG +LR + + G + + DE+Q G GR G +AF +
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAF--EHF 243
Query: 103 DIIPDIVTV 111
I+PDI+T+
Sbjct: 244 GIVPDILTL 252
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 65.7 bits (161), Expect = 5e-14
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHWW 95
AF E + + GG ++ P +Y++ V C ++DEV GFGR G +
Sbjct: 217 AAFIMEPIITGGGILMAPQDYMKA----VHE---TCQKHGALLISDEVICGFGRTG-KAF 268
Query: 96 AFQLQGDDIIPDIVTV 111
F D+ PDI+T+
Sbjct: 269 GFMN--YDVKPDIITM 282
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 65.3 bits (160), Expect = 5e-14
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
FFAE + GG I P Y + + +R ++DEV GFGR G + W D
Sbjct: 233 GFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVT--YD 289
Query: 104 IIPDIVTV 111
PD +
Sbjct: 290 FTPDAIIS 297
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 64.9 bits (159), Expect = 7e-14
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF E + GG + PPA Y ++ ++ + VADEV GFGR+G +
Sbjct: 224 AFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDH--YG 280
Query: 104 IIPDIVTV 111
I PD++T+
Sbjct: 281 IKPDLITI 288
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 64.2 bits (157), Expect = 1e-13
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
AF E +Q G ++P YL V + + +ADE+Q G R G W A +
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAV--DYE 281
Query: 103 DIIPDIVT 110
++ PDIV
Sbjct: 282 NVRPDIVL 289
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 63.8 bits (156), Expect = 2e-13
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF E +Q GG I+PPA Y E+ + R + VADEV GFGR G W+ Q
Sbjct: 222 AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQH--FG 278
Query: 104 IIPDIVTV 111
PD+ T
Sbjct: 279 FQPDLFTA 286
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 63.8 bits (156), Expect = 2e-13
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF AE +Q GG I+ P +Y E+ + + +ADEV GFGR G +W+ Q
Sbjct: 226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQT--MG 282
Query: 104 IIPDIVTV 111
I P I+T+
Sbjct: 283 IRPHIMTI 290
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 63.4 bits (155), Expect = 3e-13
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CAF E +Q G I+P NYL+ VY + + VADEVQ G GR G
Sbjct: 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCV--HHY 270
Query: 103 DIIPDIVTV 111
++ PD++ +
Sbjct: 271 NVKPDVILL 279
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 62.9 bits (154), Expect = 3e-13
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
AF E +Q G IPPA +L+E + + + VADE+Q G GR G +A
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDN- 241
Query: 103 DIIPDIVTV 111
+ PD+ +
Sbjct: 242 -VTPDMYIL 249
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 63.0 bits (154), Expect = 4e-13
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
AF AE + + GG IIPPA Y + ++DEV GFGR G W+A + +
Sbjct: 224 AFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASE-KVFG 281
Query: 104 IIPDIVTV 111
++PDI+T
Sbjct: 282 VVPDIITF 289
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 62.2 bits (152), Expect = 8e-13
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
A F E L G ++PP YL+ + + V DEV GFGR G + G
Sbjct: 222 AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFG-- 278
Query: 104 IIPDIVTV 111
+ PD++ +
Sbjct: 279 VTPDLMCI 286
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 60.6 bits (148), Expect = 2e-12
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
E +Q GG ++L ++ + + + + DEVQ G GR G ++A+Q
Sbjct: 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFN- 231
Query: 103 DIIPDIVTV 111
+ PD++ +
Sbjct: 232 -LKPDVIAL 239
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 60.3 bits (147), Expect = 3e-12
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 43 CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A ES+ Q G I+ P YL V + + + DEV GFGR G +A + +
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACEHEN 270
Query: 102 DDIIPDIVTV 111
+ PD++
Sbjct: 271 --VQPDLMAA 278
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 60.3 bits (147), Expect = 4e-12
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
F AE +Q GG + + + + + DEVQ G G GT WA+Q
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLD- 290
Query: 103 DIIPDIVTV 111
+ PDIV
Sbjct: 291 -VAPDIVAF 298
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 59.9 bits (146), Expect = 5e-12
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 43 CAFFAESLQ-SCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHW 94
AF AE + + + P Y V R +C +ADEV G GR G+
Sbjct: 192 AAFMAEPVVGASDAALAPAPGYYERV----RD---ICDEAGIIFIADEVMSGMGRCGS-P 243
Query: 95 WAFQLQGDDIIPDIVTV 111
A + + PDI +
Sbjct: 244 LALS-RWSGVTPDIAVL 259
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 59.1 bits (144), Expect = 9e-12
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CA F E +Q G + +L E K + V DEVQ G GR G +A+Q G
Sbjct: 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYG- 242
Query: 103 DIIPDIVTV 111
++PD++T
Sbjct: 243 -VVPDVLTT 250
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 58.7 bits (143), Expect = 1e-11
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CA ES+Q GG ++ + + K + +ADE+Q G GR G ++A++
Sbjct: 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQ- 238
Query: 103 DIIPDIVTV 111
I+PDI+T
Sbjct: 239 -ILPDIMTS 246
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 58.7 bits (143), Expect = 1e-11
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
CA E +Q GG +L+ + + V DEVQ G GR G +A+ G
Sbjct: 203 CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYG- 260
Query: 103 DIIPDIVTV 111
+ PDI+T
Sbjct: 261 -VTPDILTS 268
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 57.1 bits (139), Expect = 4e-11
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 43 CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E + Q GG + +L+ + K G + +ADE+ GFGR G +A +
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE 264
Query: 102 DDIIPDIVTV 111
I PDI+ +
Sbjct: 265 --IAPDILCL 272
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 55.3 bits (134), Expect = 2e-10
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 43 CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E + Q GG YL ++ R + + DE+ GFGR G +A G
Sbjct: 235 AAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG 293
Query: 102 DDIIPDIVTV 111
+ PDI+ V
Sbjct: 294 --VSPDIMCV 301
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 54.2 bits (130), Expect = 6e-10
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 43 CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
A E + GG + + R + R + DEV GF R+G +L G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLG 654
Query: 102 DDIIPDIVTV 111
PDI
Sbjct: 655 --CKPDIACF 662
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 31.4 bits (72), Expect = 0.041
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 55 GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG-DDIIPDIVT 110
G ++LRE + R G + + DEV GF RVG H Q D+ PD+
Sbjct: 215 GVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGM----QALLDVQPDLTC 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.081
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 68/158 (43%)
Query: 11 IGRYIILLAVVHLFFERIFLS--------ASL-----------------Y---------P 36
+G++ +L + FE +L A L Y P
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRP 136
Query: 37 FLFLYPCAFFAESLQS--------CGGQIIPPANY---LREVYKH--------VRAAGGV 77
F A F ++ GGQ +Y LR++Y+ ++ +
Sbjct: 137 FDKKSNSALF-RAVGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 78 CV-----ADEVQVGFGRVG---THWWAFQLQGDDIIPD 107
+ + F + G W L+ PD
Sbjct: 195 LSELIRTTLDAEKVFTQ-GLNILEW----LENPSNTPD 227
Score = 27.3 bits (60), Expect = 1.4
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 19/83 (22%)
Query: 29 FLSA--SLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA----GGVCVADE 82
LS S P + + A + + + G P E+ +++ A G+ A
Sbjct: 231 LLSIPISC-PLIGVIQLAHYVVTAKLLG---FTPG----ELRSYLKGATGHSQGLVTA-- 280
Query: 83 VQVGFGRVGTHWWAFQLQGDDII 105
V + W +F + I
Sbjct: 281 --VAIAETDS-WESFFVSVRKAI 300
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 29.4 bits (67), Expect = 0.22
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 55 GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG-DDIIPDIVT 110
G I P +L + + R +G + + DEV GF R+G QG +I DI+
Sbjct: 217 GVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGA----QGYFNIEGDIIV 268
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 29.0 bits (66), Expect = 0.31
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 55 GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG-DDIIPDIVT 110
G + P +L + + G + + DEV GF RV + QG + PD+
Sbjct: 214 GVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCG----QGYYGVTPDLTC 265
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 28.6 bits (65), Expect = 0.36
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 55 GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG-DDIIPDIVT 110
G I+P A +L + + + V DEV GF R+ Q + PD+ T
Sbjct: 213 GFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGV----QEKFGVTPDLTT 264
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 28.6 bits (65), Expect = 0.37
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 55 GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG-DDIIPDIVT 110
I P +L + G + + DEV GF RV Q +IPD+
Sbjct: 214 NCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGA----QDYYHVIPDLTC 265
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 28.6 bits (65), Expect = 0.38
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 55 GQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG-DDIIPDIVT 110
G + P +L +V + V AG + + DEV F R Q + PD+
Sbjct: 216 GIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGA----QDLLGVTPDLTA 267
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical
dehydratase, lyase; 1.82A {Clostridium difficile} PDB:
3o3n_A* 3o3o_A
Length = 408
Score = 28.1 bits (62), Expect = 0.68
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 58 IPPANYLREVYKHVRAAGGVCVADEVQVGFG 88
IP Y+ K + G +
Sbjct: 265 IPCWPYIGYKMKTLAKFGVNMTGSVYPHAWA 295
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 26.9 bits (59), Expect = 1.8
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 52 SCGGQIIPPANYLREVYKHVRAAG 75
S GGQ + A L+ +Y +
Sbjct: 195 SAGGQPVSLA-NLKAMYSIAKKYD 217
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 25.9 bits (57), Expect = 3.8
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 54 GGQIIPPANYLREVYKHVRAA 74
G++ P +RE+ +
Sbjct: 521 VGRVYPQLKEIREISIQIAVE 541
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 25.8 bits (57), Expect = 3.9
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 54 GGQIIPPANYLREVYKHVRAA 74
G++ PP ++EV ++
Sbjct: 489 QGRLYPPLANIQEVSINIAIK 509
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 25.4 bits (56), Expect = 5.9
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 54 GGQIIPPANYLREVYKHVRAA 74
G++ PP +++V +
Sbjct: 484 EGRLYPPLVTIQQVSLKIAVR 504
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.332 0.147 0.495
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,921,390
Number of extensions: 102977
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 46
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.3 bits)